Query 028713
Match_columns 205
No_of_seqs 136 out of 789
Neff 8.0
Searched_HMMs 29240
Date Tue Mar 26 02:41:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.0 7.1E-05 2.4E-09 57.9 10.7 99 42-154 43-145 (174)
2 3but_A Uncharacterized protein 97.7 0.00043 1.5E-08 51.3 11.1 71 68-139 17-89 (136)
3 1xo8_A AT1G01470; structural g 97.6 3.7E-05 1.3E-09 58.1 3.8 100 42-155 20-123 (151)
4 1n6j_G Calcineurin-binding pro 37.4 5.2 0.00018 21.4 -0.5 18 178-195 3-20 (35)
5 1nrp_R Receptor based peptide 22.1 14 0.00047 18.3 -0.5 15 75-89 6-20 (26)
6 1nro_R Receptor based peptide 21.4 21 0.00071 17.8 0.1 14 75-88 6-19 (27)
7 3me0_B PAPG protein; immunoglo 20.1 1.2E+02 0.004 21.7 3.8 89 39-127 9-109 (128)
8 2v3s_A Serine/threonine-protei 17.8 1.5E+02 0.0051 20.0 3.7 14 71-84 3-16 (96)
9 2kj1_A BM2 protein; cytoplasmi 17.7 28 0.00094 22.3 0.1 12 71-82 10-21 (89)
10 2knc_B Integrin beta-3; transm 17.5 39 0.0013 22.0 0.8 18 19-36 15-32 (79)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=97.98 E-value=7.1e-05 Score=57.85 Aligned_cols=99 Identities=10% Similarity=-0.032 Sum_probs=74.7
Q ss_pred CCcEEEEEEeEeceeecCCCCCCeeeeeEEEEEEEEeCCCCeEEEEEecEEEEEEECCEEEecccCC-ceeecccCeEE-
Q 028713 42 ISPVYMITNAYVPALNQHNSTEPIRNNSVVNLNFELSNPNERIGIYYNDIIITLYYKDTVIGTNSLA-GFYQGYKKATS- 119 (205)
Q Consensus 42 ~~P~~~v~~~~v~~~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~~~~- 119 (205)
+.|++++.++++.+++.. .+.+.+.++++|||. +.+.+..++.++.-.|..++++..+ ++..++.+++.
T Consensus 43 ~~PeV~v~~v~~~~~~l~--------~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v 113 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD--------GVDYHAKVSVKNPYS-QSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVL 113 (174)
T ss_dssp CCCEEEEEEEEEEEECSS--------SEEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEE
T ss_pred CCCEEEEEEeEEeccccc--------eEEEEEEEEEECCCC-CCccccceEEEEEECCEEEEEEecCCCceECCCCcEEE
Confidence 679999999999877532 578999999999998 9999999999999999999999985 57888887777
Q ss_pred EEEEEeecccCChhhHHhhhcccc--ceEEEEEEEEE
Q 028713 120 YGVLVNATDDHQLLRRGVLTGNTT--TVEMIRVCLKT 154 (205)
Q Consensus 120 ~~~l~~~~~~l~~~~~~~l~~d~~--g~v~l~v~v~~ 154 (205)
.+.+..... . ...+..+.. +.++.++++..
T Consensus 114 ~Vpv~v~~~----~-l~~~~~~l~~~~~i~Y~L~g~L 145 (174)
T 1yyc_A 114 DVPVKVAYS----I-AVSLMKDMCTDWDIDYQLDIGL 145 (174)
T ss_dssp EEEEEESHH----H-HHHTCCCCCSSEEECEEEEEEE
T ss_pred EEEEEEEHH----H-HHHHHHhcCCCCccceEEEEEE
Confidence 666665421 1 223334443 45666655433
No 2
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=97.74 E-value=0.00043 Score=51.32 Aligned_cols=71 Identities=8% Similarity=-0.089 Sum_probs=56.4
Q ss_pred eeEEEEEEEEeCCCCeEEEEEecEEEEEEECCEEEecccC-CceeecccCeEE-EEEEEeecccCChhhHHhhh
Q 028713 68 NSVVNLNFELSNPNERIGIYYNDIIITLYYKDTVIGTNSL-AGFYQGYKKATS-YGVLVNATDDHQLLRRGVLT 139 (205)
Q Consensus 68 ~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~v-p~f~q~~~~~~~-~~~l~~~~~~l~~~~~~~l~ 139 (205)
...+.+.+++.|||. +.+.++.+..+++..|..+|++.. ..+..++.+.+. .+.+..+...+.....+-+.
T Consensus 17 ~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~~~~hi~ 89 (136)
T 3but_A 17 QTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREWWVTHIA 89 (136)
T ss_dssp EEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTHHHHHHH
T ss_pred EEEEEEEEEEeCCCC-cceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHHHHHHhh
Confidence 678999999999998 999999999999999999999985 678888887666 77766665545443333333
No 3
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=97.63 E-value=3.7e-05 Score=58.14 Aligned_cols=100 Identities=14% Similarity=0.008 Sum_probs=71.4
Q ss_pred CCcEEEEEEeEeceeecCCCCCCeeeeeEEEEEEEEeCCCCeEEEEEecEEEEEEECCEEEecccCC-ceeecccCeEE-
Q 028713 42 ISPVYMITNAYVPALNQHNSTEPIRNNSVVNLNFELSNPNERIGIYYNDIIITLYYKDTVIGTNSLA-GFYQGYKKATS- 119 (205)
Q Consensus 42 ~~P~~~v~~~~v~~~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~~~~- 119 (205)
+.|++++.++++.+++. ....+.+.++++|||. +.+.+..++.++.-.|..++++..+ ++..++.+++.
T Consensus 20 ~~P~v~v~~v~~~~~~~--------~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v 90 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR--------DSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTAL 90 (151)
T ss_dssp CSCCCBCSEEEECCCTT--------TEECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEE
T ss_pred CCCEEEEEEeEEeccCc--------ceeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEE
Confidence 56888888888875532 2568999999999998 9999999999999999999999985 57778887776
Q ss_pred EEEEEeecccCChhhHHhhhccc-c-ceEEEEEEEEEE
Q 028713 120 YGVLVNATDDHQLLRRGVLTGNT-T-TVEMIRVCLKTA 155 (205)
Q Consensus 120 ~~~l~~~~~~l~~~~~~~l~~d~-~-g~v~l~v~v~~~ 155 (205)
.+.+......+ ..+..+. . +.++.++++...
T Consensus 91 ~vpv~v~~~~l-----~~~~~~l~~~~~i~Y~l~g~l~ 123 (151)
T 1xo8_A 91 DIPVVVPYSIL-----FNLARDVGVDWDIDYELQIGLT 123 (151)
T ss_dssp EECCCEEHHHH-----HHHHHHHHHHSEEEEEEEEEEE
T ss_pred EEEEEEEHHHH-----HHHHHhcccCCcccEEEEEEEE
Confidence 65554432211 2222232 2 566666554443
No 4
>1n6j_G Calcineurin-binding protein cabin 1; MADS-BOX, protein-DNA complex, histone deacetylases, transcription/DNA complex; 2.20A {Homo sapiens}
Probab=37.43 E-value=5.2 Score=21.36 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=14.4
Q ss_pred ECCCCcccCCCcchhhhh
Q 028713 178 IGSDGRISGQREIKLQQM 195 (205)
Q Consensus 178 v~~~G~~~~~~~~~~~~~ 195 (205)
+.|.|.++.+.++|+|..
T Consensus 3 lsp~gsiseetkqklk~~ 20 (35)
T 1n6j_G 3 LSPKGSISEETKQKLKSA 20 (35)
T ss_dssp -CCSSCCCHHHHHHHHHH
T ss_pred cCCCCcccHHHHHHHHHH
Confidence 468899999999998764
No 5
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=22.08 E-value=14 Score=18.27 Aligned_cols=15 Identities=33% Similarity=0.769 Sum_probs=9.6
Q ss_pred EEEeCCCCeEEEEEe
Q 028713 75 FELSNPNERIGIYYN 89 (205)
Q Consensus 75 l~~~NPN~~~~i~Y~ 89 (205)
+..+|||.+..-.++
T Consensus 6 fllrnpndkyepfwe 20 (26)
T 1nrp_R 6 FLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhcCCCcccCcccc
Confidence 346899987544443
No 6
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=21.43 E-value=21 Score=17.75 Aligned_cols=14 Identities=36% Similarity=0.802 Sum_probs=9.0
Q ss_pred EEEeCCCCeEEEEE
Q 028713 75 FELSNPNERIGIYY 88 (205)
Q Consensus 75 l~~~NPN~~~~i~Y 88 (205)
+..+|||.+..-.+
T Consensus 6 fllrnpndkyepfw 19 (27)
T 1nro_R 6 FLLRNPNDKYEPFW 19 (27)
T ss_pred ccccCCCcccCccc
Confidence 34689998754433
No 7
>3me0_B PAPG protein; immunoglobulin pilin chaperone, chaperone, fimbrium, immunog domain; HET: MSE; 2.03A {Escherichia coli} PDB: 2wmp_B
Probab=20.05 E-value=1.2e+02 Score=21.66 Aligned_cols=89 Identities=13% Similarity=0.182 Sum_probs=44.8
Q ss_pred EecCCcEEEEEEeEeceeecCCCC--CCeeeee--EEEEEEEE-eC--C--C--CeEEEEEec-EEEEEEECCEEEeccc
Q 028713 39 LKPISPVYMITNAYVPALNQHNST--EPIRNNS--VVNLNFEL-SN--P--N--ERIGIYYND-IIITLYYKDTVIGTNS 106 (205)
Q Consensus 39 lrP~~P~~~v~~~~v~~~~~~~~~--~~~~l~~--~l~~~l~~-~N--P--N--~~~~i~Y~~-~~~~v~Y~g~~lg~~~ 106 (205)
.||..|.+.++.-+++.=.+..+. .++.++. ..++.+.+ .| | | .++.+..++ ....++-.|...++..
T Consensus 9 ~~~~~~~l~IdHG~ls~~~a~Gnt~~~~isV~Ct~p~~Vki~lt~~~~p~~~~~~~f~V~L~ngl~S~l~lNG~~~~e~~ 88 (128)
T 3me0_B 9 CRPSAQSLEIKHGDLSINSANNHYAAQTLSVSCDVPANIRFMLLRNTTPTYSHGKKFSVGLGHGWDSIVSVNGVDTGETT 88 (128)
T ss_dssp EEECCSCCEEECCCSSSSCCSSCEEEEEEEEEESSCEEEEEEEEECSCCSSCCTTSCEEEEETTEEEEEEETTBCSSEEE
T ss_pred cCCCCCceecccceechhhcCCCEEeeEEEEEeCCCceEEEEEecCCcccccccCceEEecCCCeEEEEEECCeecccee
Confidence 489999999998877643332221 0111111 11222222 22 1 1 234555544 5666666777777777
Q ss_pred CCceeecccCeEEEEEEEeec
Q 028713 107 LAGFYQGYKKATSYGVLVNAT 127 (205)
Q Consensus 107 vp~f~q~~~~~~~~~~l~~~~ 127 (205)
+.-..++.++.++...|.+..
T Consensus 89 ~~~~~~~s~tvtV~S~L~g~~ 109 (128)
T 3me0_B 89 MRWYKAGTQNLTIGSRLYGES 109 (128)
T ss_dssp EEESSSEEEEEEEEEEEEECS
T ss_pred EEEEecCCcEEEEEEEEecCc
Confidence 633344444434355564443
No 8
>2v3s_A Serine/threonine-protein kinase OSR1; ATP-binding, magnesium, metal-binding, nucleotide-binding, phosphorylation, polymorphism, transferase; 1.70A {Homo sapiens}
Probab=17.80 E-value=1.5e+02 Score=19.99 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=11.1
Q ss_pred EEEEEEEeCCCCeE
Q 028713 71 VNLNFELSNPNERI 84 (205)
Q Consensus 71 l~~~l~~~NPN~~~ 84 (205)
+++.++.+|+++.+
T Consensus 3 v~LvLRlRn~~rEL 16 (96)
T 2v3s_A 3 ISLVLRLRNSKKEL 16 (96)
T ss_dssp EEEEEEEECTTSCE
T ss_pred eeEEEEeccccchh
Confidence 47789999999743
No 9
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=17.73 E-value=28 Score=22.33 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=0.0
Q ss_pred EEEEEEEeCCCC
Q 028713 71 VNLNFELSNPNE 82 (205)
Q Consensus 71 l~~~l~~~NPN~ 82 (205)
.++.++++|||+
T Consensus 10 v~lki~ir~pnk 21 (89)
T 2kj1_A 10 VNMKIRIKGPNK 21 (89)
T ss_dssp --------CCCH
T ss_pred CceEEEecCCCH
No 10
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=17.49 E-value=39 Score=21.98 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHheeee
Q 028713 19 LWLCQVVIVWVLISVLIW 36 (205)
Q Consensus 19 ~~~~~~lvll~i~~li~~ 36 (205)
..+++.++++|++++++|
T Consensus 15 ~gvi~gilliGllllliw 32 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIW 32 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Done!