Query 028714
Match_columns 205
No_of_seqs 265 out of 895
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 15:51:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3260 Calcyclin-binding prot 100.0 1E-50 2.3E-55 331.0 12.5 184 1-184 1-198 (224)
2 PLN03088 SGT1, suppressor of 99.9 1.1E-22 2.4E-27 183.3 18.8 121 62-183 154-309 (356)
3 cd06468 p23_CacyBP p23_like do 99.9 4.8E-22 1E-26 146.3 11.1 89 64-152 1-92 (92)
4 cd06488 p23_melusin_like p23_l 99.9 1.8E-21 4E-26 142.9 10.6 87 65-152 1-87 (87)
5 cd06489 p23_CS_hSgt1_like p23_ 99.9 3.7E-21 8E-26 139.8 9.4 84 68-152 1-84 (84)
6 cd06465 p23_hB-ind1_like p23_l 99.8 1.6E-20 3.5E-25 142.6 11.7 96 66-164 2-102 (108)
7 KOG1309 Suppressor of G2 allel 99.8 3.6E-20 7.9E-25 151.7 9.3 118 65-183 4-151 (196)
8 cd00237 p23 p23 binds heat sho 99.8 1.2E-19 2.6E-24 138.4 11.6 100 65-167 2-105 (106)
9 cd06466 p23_CS_SGT1_like p23_l 99.8 3E-19 6.5E-24 128.6 9.7 84 68-152 1-84 (84)
10 PF04969 CS: CS domain; Inter 99.7 3E-17 6.6E-22 115.6 10.5 77 65-142 1-79 (79)
11 cd06493 p23_NUDCD1_like p23_NU 99.7 2.1E-17 4.7E-22 120.6 9.6 82 67-152 1-85 (85)
12 cd06463 p23_like Proteins cont 99.7 3.2E-17 6.9E-22 116.2 10.1 83 69-152 1-84 (84)
13 cd06469 p23_DYX1C1_like p23_li 99.7 4.6E-17 9.9E-22 115.9 9.3 78 69-152 1-78 (78)
14 cd06467 p23_NUDC_like p23_like 99.7 1.2E-16 2.5E-21 115.6 9.9 82 67-152 1-85 (85)
15 cd06490 p23_NCB5OR p23_like do 99.6 1.4E-15 3E-20 111.9 9.9 83 67-152 1-87 (87)
16 cd06494 p23_NUDCD2_like p23-li 99.6 6.1E-15 1.3E-19 110.1 10.8 84 64-152 5-93 (93)
17 cd06495 p23_NUDCD3_like p23-li 99.6 7E-15 1.5E-19 111.5 11.2 92 64-156 4-98 (102)
18 cd06492 p23_mNUDC_like p23-lik 99.6 2E-14 4.3E-19 105.9 9.4 82 67-152 1-87 (87)
19 PF09032 Siah-Interact_N: Siah 99.5 8.1E-15 1.7E-19 106.1 4.0 40 2-41 5-44 (79)
20 KOG3158 HSP90 co-chaperone p23 99.5 1.8E-14 4E-19 117.5 6.2 97 64-163 7-108 (180)
21 KOG2265 Nuclear distribution p 99.5 6.4E-14 1.4E-18 114.5 7.5 127 63-193 17-156 (179)
22 KOG1667 Zn2+-binding protein M 99.3 1.4E-11 3.1E-16 106.1 8.1 92 63-155 213-305 (320)
23 cd00298 ACD_sHsps_p23-like Thi 99.2 7.3E-11 1.6E-15 81.3 7.7 73 69-142 1-80 (80)
24 COG5091 SGT1 Suppressor of G2 98.7 2E-08 4.3E-13 88.1 4.2 146 8-153 94-265 (368)
25 COG0071 IbpA Molecular chapero 98.2 1.5E-05 3.2E-10 63.6 10.0 83 62-145 38-135 (146)
26 cd06472 ACD_ScHsp26_like Alpha 98.1 2.9E-05 6.3E-10 57.0 8.6 76 66-142 1-92 (92)
27 KOG4379 Uncharacterized conser 98.0 1E-05 2.3E-10 75.1 6.3 88 63-155 288-378 (596)
28 cd06464 ACD_sHsps-like Alpha-c 97.8 0.00011 2.3E-09 52.2 7.7 73 69-142 2-88 (88)
29 PF00011 HSP20: Hsp20/alpha cr 97.8 0.00018 3.9E-09 53.2 9.2 77 68-145 1-90 (102)
30 PF05002 SGS: SGS domain ; In 97.8 7.1E-06 1.5E-10 59.9 1.3 37 146-184 2-38 (82)
31 cd06471 ACD_LpsHSP_like Group 97.8 0.00019 4.2E-09 52.5 8.3 75 66-142 2-93 (93)
32 cd06526 metazoan_ACD Alpha-cry 97.2 0.0019 4.2E-08 46.4 7.0 68 74-142 7-83 (83)
33 cd06475 ACD_HspB1_like Alpha c 97.0 0.0053 1.1E-07 44.9 8.2 72 68-140 4-84 (86)
34 cd06497 ACD_alphaA-crystallin_ 97.0 0.0041 9E-08 45.4 7.6 72 70-142 6-86 (86)
35 cd06479 ACD_HspB7_like Alpha c 97.0 0.0043 9.2E-08 45.1 7.5 72 70-142 4-81 (81)
36 cd06498 ACD_alphaB-crystallin_ 97.0 0.0044 9.4E-08 45.1 7.4 72 71-143 4-84 (84)
37 PRK10743 heat shock protein Ib 96.8 0.013 2.9E-07 46.5 9.6 76 65-143 35-124 (137)
38 cd06478 ACD_HspB4-5-6 Alpha-cr 96.8 0.0067 1.4E-07 43.9 7.1 71 71-142 4-83 (83)
39 cd06470 ACD_IbpA-B_like Alpha- 96.7 0.019 4.1E-07 42.0 9.0 73 67-142 3-90 (90)
40 PRK11597 heat shock chaperone 96.5 0.022 4.8E-07 45.6 8.8 76 66-144 34-123 (142)
41 cd06476 ACD_HspB2_like Alpha c 96.3 0.029 6.4E-07 40.7 7.8 70 72-142 5-83 (83)
42 cd06481 ACD_HspB9_like Alpha c 96.1 0.03 6.5E-07 40.9 7.0 68 72-140 5-85 (87)
43 PF08190 PIH1: pre-RNA process 95.4 0.2 4.3E-06 44.2 10.7 66 72-141 259-327 (328)
44 cd06482 ACD_HspB10 Alpha cryst 95.0 0.13 2.8E-06 37.8 7.0 67 71-138 5-83 (87)
45 cd06477 ACD_HspB3_Like Alpha c 94.7 0.25 5.4E-06 35.9 7.8 68 71-139 4-80 (83)
46 PF05455 GvpH: GvpH; InterPro 91.6 1.7 3.7E-05 36.2 8.9 71 72-146 99-171 (177)
47 cd06480 ACD_HspB8_like Alpha-c 87.7 4.5 9.8E-05 29.9 7.7 68 72-140 13-89 (91)
48 PF08898 DUF1843: Domain of un 70.4 6.8 0.00015 26.3 3.3 31 7-37 14-52 (53)
49 PF09278 MerR-DNA-bind: MerR, 57.6 18 0.0004 24.0 3.7 38 4-41 12-54 (65)
50 PF12690 BsuPI: Intracellular 50.0 30 0.00065 24.9 3.9 56 76-134 2-59 (82)
51 cd04782 HTH_BltR Helix-Turn-He 48.1 32 0.0007 25.1 4.0 34 8-41 59-92 (97)
52 cd04777 HTH_MerR-like_sg1 Heli 38.2 58 0.0013 24.0 4.1 35 7-41 56-99 (107)
53 COG3354 FlaG Putative archaeal 33.2 70 0.0015 26.0 3.9 50 77-136 71-122 (154)
54 PF10759 DUF2587: Protein of u 32.5 36 0.00078 27.8 2.2 32 9-40 43-75 (169)
55 PF09087 Cyc-maltodext_N: Cycl 32.4 1.5E+02 0.0032 21.8 5.3 19 67-85 42-60 (88)
56 PF12510 Smoothelin: Smootheli 31.8 1.1E+02 0.0024 20.6 4.1 30 7-36 22-51 (54)
57 COG4856 Uncharacterized protei 30.3 1.4E+02 0.003 28.0 5.8 66 77-146 71-138 (403)
58 PRK06746 peptide chain release 26.5 1.3E+02 0.0027 27.5 4.9 38 4-41 35-72 (326)
59 cd04770 HTH_HMRTR Helix-Turn-H 26.4 1.2E+02 0.0027 22.7 4.2 35 7-41 58-97 (123)
60 PTZ00204 hypothetical protein; 26.3 65 0.0014 24.4 2.5 61 65-132 55-118 (120)
61 cd04788 HTH_NolA-AlbR Helix-Tu 26.3 1.1E+02 0.0024 22.2 3.8 34 7-41 58-91 (96)
62 PRK09400 secE preprotein trans 26.0 1.1E+02 0.0024 20.9 3.5 30 2-31 7-36 (61)
63 cd01107 HTH_BmrR Helix-Turn-He 25.8 1.2E+02 0.0025 22.6 3.9 34 8-41 60-93 (108)
64 cd04787 HTH_HMRTR_unk Helix-Tu 25.7 1.2E+02 0.0027 23.3 4.2 34 8-41 59-97 (133)
65 KOG3247 Uncharacterized conser 25.4 38 0.00083 32.0 1.4 82 65-152 4-89 (466)
66 KOG0710 Molecular chaperone (s 25.3 1.3E+02 0.0029 24.9 4.6 80 65-145 83-182 (196)
67 cd04786 HTH_MerR-like_sg7 Heli 24.7 1.2E+02 0.0026 23.5 3.9 34 8-41 59-96 (131)
68 COG0216 PrfA Protein chain rel 23.8 1.5E+02 0.0033 27.4 4.8 39 3-41 56-94 (363)
69 smart00340 HALZ homeobox assoc 23.8 54 0.0012 21.1 1.4 13 4-16 23-35 (44)
70 TIGR00327 secE_euk_arch protei 23.7 1.6E+02 0.0035 20.2 3.9 30 2-31 3-32 (61)
71 PF00159 Hormone_3: Pancreatic 23.3 1E+02 0.0023 19.0 2.6 22 2-23 14-35 (36)
72 PF13670 PepSY_2: Peptidase pr 22.3 1.8E+02 0.0039 20.3 4.2 18 98-115 55-72 (83)
73 cd04784 HTH_CadR-PbrR Helix-Tu 21.9 1.6E+02 0.0035 22.3 4.1 35 7-41 58-97 (127)
74 TIGR02047 CadR-PbrR Cd(II)/Pb( 21.9 1.4E+02 0.0031 22.8 3.9 34 8-41 59-97 (127)
75 COG5509 Uncharacterized small 21.9 1.2E+02 0.0027 20.9 3.0 28 14-41 23-50 (65)
76 TIGR02044 CueR Cu(I)-responsiv 21.7 1.5E+02 0.0032 22.6 3.9 34 8-41 59-97 (127)
77 cd01108 HTH_CueR Helix-Turn-He 21.5 1.7E+02 0.0037 22.3 4.2 35 7-41 58-97 (127)
78 cd04768 HTH_BmrR-like Helix-Tu 21.4 1.6E+02 0.0034 21.4 3.8 34 7-41 58-91 (96)
79 cd04785 HTH_CadR-PbrR-like Hel 20.4 1.8E+02 0.004 22.1 4.2 34 8-41 59-97 (126)
80 cd04769 HTH_MerR2 Helix-Turn-H 20.3 1.7E+02 0.0036 21.9 3.9 34 8-41 58-97 (116)
81 PRK09458 pspB phage shock prot 20.2 1.7E+02 0.0036 21.1 3.5 30 6-41 38-67 (75)
No 1
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=100.00 E-value=1e-50 Score=331.04 Aligned_cols=184 Identities=43% Similarity=0.596 Sum_probs=163.2
Q ss_pred ChhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhh--cCC---C-CC--CCC--CCcCCCCcceeeeecceEEE
Q 028714 1 MAEDLVLDLEELRQLRSIAKRPRIVSLINSEIHTLEKLSKE--EGP---A-PV--PTP--AKVSSTPALNYITLGSFSWD 70 (205)
Q Consensus 1 ~~~~l~~Dl~El~~Ll~~a~R~~v~~~L~~ei~~le~~~~~--~~~---~-~~--~~~--~~~~~~~~~~~~~i~~y~W~ 70 (205)
|++||++||+||++||.+|+||||+++|+.|++++|++|.+ ++. + +. ++| ++..|.+..+.+.++.|+|+
T Consensus 1 ~~Eel~~DleEl~~ll~~Akr~RV~d~ltseks~~E~ei~n~~~~kak~kae~~~~~~~s~s~~pvs~~yl~~vt~ygWD 80 (224)
T KOG3260|consen 1 MAEELGLDLEELRQLLNIAKRPRVLDLLTSEKSNLEKEIDNAVSSKAKPKAEVTVPAPVSSSGKPVSSSYLNYVTLYGWD 80 (224)
T ss_pred ChhHhhccHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhccccCcccccCCCccccCCcchhhhHHHhhhcCcc
Confidence 78999999999999999999999999999999999999988 222 1 11 222 22234455566788999999
Q ss_pred ecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeCCEEEEEEEeCCCCcccc
Q 028714 71 QDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGNWLD 150 (205)
Q Consensus 71 Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~~W~~ 150 (205)
|++++|++||+|.||..++|+|+|+++||++.+++++|++|.+.+++|+++|.|++|+.+|++++|.|.|+|.+..+|+.
T Consensus 81 Qs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkVe~~rwd~ 160 (224)
T KOG3260|consen 81 QSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKVENTRWDY 160 (224)
T ss_pred ccCCeeEEEEEeecccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehhhhcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred cccccc----ccCCCCCCCCCCcHHHHHHHHHHHhhcc
Q 028714 151 LQYKED----KLKPNLDKERDPMAGIMDLMKVSCLLFM 184 (205)
Q Consensus 151 L~~~e~----k~kp~~d~~~dp~a~lm~mmK~my~~~~ 184 (205)
|+..++ +.+|+++++.||++|||||||+||+++=
T Consensus 161 Lt~~~Ke~Kek~kpsl~ke~DP~~glmnvmKk~YeDGD 198 (224)
T KOG3260|consen 161 LTQVEKECKEKEKPSLDKETDPSEGLMNVMKKIYEDGD 198 (224)
T ss_pred HHHHHHHHhhccCccccccCChHHHHHHHHHHHHhccc
Confidence 996553 3589999999999999999999999873
No 2
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.90 E-value=1.1e-22 Score=183.28 Aligned_cols=121 Identities=22% Similarity=0.292 Sum_probs=105.1
Q ss_pred eeecceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeCCEEEEEEE
Q 028714 62 ITLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLF 141 (205)
Q Consensus 62 ~~i~~y~W~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~ 141 (205)
....||+|||++++|+|+|+++|++++++.|+|++++|+|.+...+|.+|.|.+ +||++|+|+.|+++|.+++|+|+|+
T Consensus 154 ~~~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~-~L~~~I~p~~s~~~v~~~Kiei~l~ 232 (356)
T PLN03088 154 KPKYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQP-RLFGKIIPDKCKYEVLSTKIEIRLA 232 (356)
T ss_pred CCccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeecc-cccccccccccEEEEecceEEEEEe
Confidence 346899999999999999999999999999999999999999877888999986 9999999999999999999999999
Q ss_pred eCCCCcccccccccccc-----------------------CCCCC------------CCCCCcHHHHHHHHHHHhhc
Q 028714 142 KASKGNWLDLQYKEDKL-----------------------KPNLD------------KERDPMAGIMDLMKVSCLLF 183 (205)
Q Consensus 142 K~~~~~W~~L~~~e~k~-----------------------kp~~d------------~~~dp~a~lm~mmK~my~~~ 183 (205)
|+++.+|++|+..+... +.++| +..|+.++||+|||+||.+|
T Consensus 233 K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~dWdk~~~~~~~e~~~e~~~g~~~~~~~f~~iY~~~ 309 (356)
T PLN03088 233 KAEPITWASLEYGKGPAVLPKPNVSSEVSQRPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAALNKFFREIYQNA 309 (356)
T ss_pred cCCCCCccccccCCccccccCCCCCcCcccCCCCCCCCCCCCChhhhhhhhhhhhhccccccchHHHHHHHHHHhcC
Confidence 99988999998654210 01122 12478999999999999987
No 3
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.88 E-value=4.8e-22 Score=146.33 Aligned_cols=89 Identities=47% Similarity=0.818 Sum_probs=83.3
Q ss_pred ecceEEEecCCEEEEEEEeCCCCC---CCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeCCEEEEEE
Q 028714 64 LGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIML 140 (205)
Q Consensus 64 i~~y~W~Qs~~~V~I~I~lk~v~~---e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L 140 (205)
+++|+|+|+.+.|+|+|+++++.. +++.|.|++++|.|.+.+.+|.+|.+.+++||++|+|++|+|++.+++|+|+|
T Consensus 1 ~~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L 80 (92)
T cd06468 1 ITKYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITL 80 (92)
T ss_pred CceeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEE
Confidence 578999999999999999998854 99999999999999998878899999887799999999999999999999999
Q ss_pred EeCCCCcccccc
Q 028714 141 FKASKGNWLDLQ 152 (205)
Q Consensus 141 ~K~~~~~W~~L~ 152 (205)
.|+++++|++|+
T Consensus 81 ~K~~~~~W~~L~ 92 (92)
T cd06468 81 AKKKEKKWESLT 92 (92)
T ss_pred EeCCCCccCccC
Confidence 999989999985
No 4
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.86 E-value=1.8e-21 Score=142.90 Aligned_cols=87 Identities=24% Similarity=0.298 Sum_probs=81.3
Q ss_pred cceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeCCEEEEEEEeCC
Q 028714 65 GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKAS 144 (205)
Q Consensus 65 ~~y~W~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~ 144 (205)
.||+|+|+++.|+|+|++++++++++.+.|+++++.|.+...+|+.|.+.+ +||++|+|+.|++++.+++|+|+|+|++
T Consensus 1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l-~L~~~I~~~~s~~~v~~~kvei~L~K~~ 79 (87)
T cd06488 1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDI-ELWGVIDVEKSSVNMLPTKVEIKLRKAE 79 (87)
T ss_pred CCccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEe-eccceEChhHcEEEecCcEEEEEEEeCC
Confidence 489999999999999999999999999999999988877655688899998 9999999999999999999999999999
Q ss_pred CCcccccc
Q 028714 145 KGNWLDLQ 152 (205)
Q Consensus 145 ~~~W~~L~ 152 (205)
+++|++|+
T Consensus 80 ~~~W~~Le 87 (87)
T cd06488 80 PGSWAKLE 87 (87)
T ss_pred CCcCccCC
Confidence 88999985
No 5
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.85 E-value=3.7e-21 Score=139.77 Aligned_cols=84 Identities=26% Similarity=0.442 Sum_probs=80.0
Q ss_pred EEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeCCEEEEEEEeCCCCc
Q 028714 68 SWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGN 147 (205)
Q Consensus 68 ~W~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~~ 147 (205)
+|+|+++.|+|+|+++|++++++.|+|++++|+|.+.+.+|.+|.|.+ +||++|+|++|++++.+++|+|+|+|+++++
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~-~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~ 79 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKL-HLLHPIVPEQSSYKILSTKIEIKLKKTEAIR 79 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEee-ecCceecchhcEEEEeCcEEEEEEEcCCCCC
Confidence 699999999999999999999999999999999999877788899998 9999999999999999999999999998889
Q ss_pred ccccc
Q 028714 148 WLDLQ 152 (205)
Q Consensus 148 W~~L~ 152 (205)
|++|+
T Consensus 80 W~~Le 84 (84)
T cd06489 80 WSKLE 84 (84)
T ss_pred CccCC
Confidence 99985
No 6
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.84 E-value=1.6e-20 Score=142.63 Aligned_cols=96 Identities=28% Similarity=0.412 Sum_probs=86.3
Q ss_pred ceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcC-CCceeEeeccCCCCCCCCCCcEEEEeCCEEEEEEEeCC
Q 028714 66 SFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV-QGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKAS 144 (205)
Q Consensus 66 ~y~W~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~-~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~ 144 (205)
.|+|+||.+.|+|+|+++++ +++.|.|++++|+|.+.+. +|++|.+.+ +||++|+|++|+|++.+++|+|+|+|++
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~-~L~~~I~pe~s~~~v~~~kveI~L~K~~ 78 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDL-EFYKEIDPEESKYKVTGRQIEFVLRKKE 78 (108)
T ss_pred ceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEe-EhhhhccccccEEEecCCeEEEEEEECC
Confidence 59999999999999999997 8999999999999999764 578899986 9999999999999999999999999999
Q ss_pred -CCcccccccccccc---CCCCCC
Q 028714 145 -KGNWLDLQYKEDKL---KPNLDK 164 (205)
Q Consensus 145 -~~~W~~L~~~e~k~---kp~~d~ 164 (205)
+++|++|++.+.|. +++++.
T Consensus 79 ~~~~W~~L~~~~~k~~~~~~d~~~ 102 (108)
T cd06465 79 AGEYWPRLTKEKGKLPWLKVDFDK 102 (108)
T ss_pred CCCCCcccccCCCCCCceECCchh
Confidence 78999999877664 556644
No 7
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=99.82 E-value=3.6e-20 Score=151.67 Aligned_cols=118 Identities=27% Similarity=0.354 Sum_probs=101.4
Q ss_pred cceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeCCEEEEEEEeCC
Q 028714 65 GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKAS 144 (205)
Q Consensus 65 ~~y~W~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~ 144 (205)
.+|+|||+...|.|+|+.++|+.++|.|.|+++.|++.+...+|..|.|.. .||++|+|+.|++++.+.+|+|+|.|.+
T Consensus 4 ~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~-~L~~~I~pe~~s~k~~stKVEI~L~K~~ 82 (196)
T KOG1309|consen 4 IRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQL-KLYHEIIPEKSSFKVFSTKVEITLAKAE 82 (196)
T ss_pred ccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhH-HhcccccccceeeEeeeeeEEEEecccc
Confidence 479999999999999999999999999999999999999888889999975 8999999999999999999999999987
Q ss_pred CCccccccccccc-----c------------CC--CCC--------CCCCC---cHHHHHHHHHHHhhc
Q 028714 145 KGNWLDLQYKEDK-----L------------KP--NLD--------KERDP---MAGIMDLMKVSCLLF 183 (205)
Q Consensus 145 ~~~W~~L~~~e~k-----~------------kp--~~d--------~~~dp---~a~lm~mmK~my~~~ 183 (205)
...|..|.++... . +| +.| ++.|| .|+||+||++||+.|
T Consensus 83 ~irW~~Le~g~~~~~~~~~~vs~~~s~~Pssk~~kdWdkl~~e~~~eEe~e~l~dAAl~~lF~kiY~~a 151 (196)
T KOG1309|consen 83 IIRWESLEKGKGSAVAPKPNVSSTASSYPSSKPAKDWDKLEKEEKKEEEDEKLEDAALNKLFQKIYSDA 151 (196)
T ss_pred chhhhhhhcccCcccccccccccccccCCCCCcccCHHHHHHHhhhhhhccchhHHHHHHHHHHHHhcC
Confidence 7799999953311 0 11 111 13466 789999999999987
No 8
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=99.82 E-value=1.2e-19 Score=138.44 Aligned_cols=100 Identities=18% Similarity=0.262 Sum_probs=87.8
Q ss_pred cceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeCCEEEEEEEeCC
Q 028714 65 GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKAS 144 (205)
Q Consensus 65 ~~y~W~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~ 144 (205)
+.+.|+|+.+.|+|+|.+++ .+++.|+|++++|+|++.+.+|.+|.|.+ +||++|+|++|++++++++|+|.|+|++
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~~g~~y~~~l-~l~~~I~pe~Sk~~v~~r~ve~~L~K~~ 78 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNGDNVKIYNEI-ELYDRVDPNDSKHKRTDRSILCCLRKGK 78 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECCCCcEEEEEE-EeecccCcccCeEEeCCceEEEEEEeCC
Confidence 35899999999999999998 48999999999999998665788899987 9999999999999999999999999998
Q ss_pred CC-cccccccccccc---CCCCCCCCC
Q 028714 145 KG-NWLDLQYKEDKL---KPNLDKERD 167 (205)
Q Consensus 145 ~~-~W~~L~~~e~k~---kp~~d~~~d 167 (205)
++ +|++|++...|. +++||+..|
T Consensus 79 ~~~~WprL~k~~~k~~~lk~DfdkW~D 105 (106)
T cd00237 79 EGVAWPRLTKEKAKPNWLSVDFDNWRD 105 (106)
T ss_pred CCCCCchhhcCCCCCCcEECcchhccC
Confidence 66 999999866553 677776543
No 9
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.80 E-value=3e-19 Score=128.59 Aligned_cols=84 Identities=35% Similarity=0.515 Sum_probs=78.8
Q ss_pred EEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeCCEEEEEEEeCCCCc
Q 028714 68 SWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGN 147 (205)
Q Consensus 68 ~W~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~~ 147 (205)
+|+|+++.|+|+|+++|+.++++.|.|++++|.|.+...++++|.+.+ +||++|+|++|+|++.+++|+|+|+|+.+++
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~-~L~~~I~~~~s~~~~~~~~vei~L~K~~~~~ 79 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLEL-DLFGPIDPEQSKVSVLPTKVEITLKKAEPGS 79 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEec-ccccccCchhcEEEEeCeEEEEEEEcCCCCC
Confidence 599999999999999999999999999999999998765567899987 8999999999999999999999999999899
Q ss_pred ccccc
Q 028714 148 WLDLQ 152 (205)
Q Consensus 148 W~~L~ 152 (205)
|++|+
T Consensus 80 W~~L~ 84 (84)
T cd06466 80 WPSLE 84 (84)
T ss_pred CccCC
Confidence 99985
No 10
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.73 E-value=3e-17 Score=115.63 Aligned_cols=77 Identities=27% Similarity=0.477 Sum_probs=69.3
Q ss_pred cceEEEecCCEEEEEEEeCCC--CCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeCCEEEEEEEe
Q 028714 65 GSFSWDQDNEKVKIYISLEGV--VQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFK 142 (205)
Q Consensus 65 ~~y~W~Qs~~~V~I~I~lk~v--~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K 142 (205)
++|.|+|+.+.|+|+|++++. +++++.|+|++++|.|.+...+|..|.+.+ +||++|+|++|+|++.+++|+|+|+|
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~-~L~~~I~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEG-ELFGEIDPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEE-EBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEE-EEeeeEcchhcEEEEECCEEEEEEEC
Confidence 589999999999999999765 489999999999999999876678899986 89999999999999999999999998
No 11
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.73 E-value=2.1e-17 Score=120.59 Aligned_cols=82 Identities=21% Similarity=0.426 Sum_probs=71.4
Q ss_pred eEEEecCCEEEEEEEeC-CCCCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeCC-EEEEEEEeCC
Q 028714 67 FSWDQDNEKVKIYISLE-GVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPT-RVVIMLFKAS 144 (205)
Q Consensus 67 y~W~Qs~~~V~I~I~lk-~v~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~-kIeI~L~K~~ 144 (205)
|.|+||.+.|.|+|+++ +++++++.|+|++++|.|.+.+ +.. .+ .++||+.|+|++|+|++.++ +|+|.|.|++
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~--~~~-~~-~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~ 76 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKD--QAP-LL-EGKLYSSIDHESSTWIIKENKSLEVSLIKKD 76 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCC--CCe-EE-eCcccCcccccCcEEEEeCCCEEEEEEEECC
Confidence 89999999999999995 8899999999999999998742 222 24 46999999999999999766 6999999999
Q ss_pred CC-cccccc
Q 028714 145 KG-NWLDLQ 152 (205)
Q Consensus 145 ~~-~W~~L~ 152 (205)
++ +|++|.
T Consensus 77 ~~~~W~~L~ 85 (85)
T cd06493 77 EGPTWPELV 85 (85)
T ss_pred CCccccccC
Confidence 77 999984
No 12
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.73 E-value=3.2e-17 Score=116.24 Aligned_cols=83 Identities=31% Similarity=0.446 Sum_probs=77.8
Q ss_pred EEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeCCEEEEEEEeCCC-Cc
Q 028714 69 WDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASK-GN 147 (205)
Q Consensus 69 W~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~-~~ 147 (205)
|+|+++.|+|+|+++++.++++.|.|++++|.|.+.+.++..|.+.+ .|+++|+|++|+|++.+++|+|+|.|+.+ ++
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~-~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~ 79 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEG-ELFGPIDPEESKWTVEDRKIEITLKKKEPGEW 79 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEee-EccCccchhhcEEEEeCCEEEEEEEECCCCCC
Confidence 99999999999999999899999999999999999876567899987 89999999999999999999999999998 69
Q ss_pred ccccc
Q 028714 148 WLDLQ 152 (205)
Q Consensus 148 W~~L~ 152 (205)
|++|+
T Consensus 80 W~~l~ 84 (84)
T cd06463 80 WPRLE 84 (84)
T ss_pred CcccC
Confidence 99984
No 13
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.72 E-value=4.6e-17 Score=115.90 Aligned_cols=78 Identities=32% Similarity=0.470 Sum_probs=72.7
Q ss_pred EEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeCCEEEEEEEeCCCCcc
Q 028714 69 WDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGNW 148 (205)
Q Consensus 69 W~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~~W 148 (205)
|+|+++.|+|+|.++|+.++++.|++++++|.+.+ .+|.+.+ +||++|+|++|++++.+++|+|+|.|+++++|
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-----~~~~~~~-~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~W 74 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-----PPYLFEL-DLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIW 74 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC-----CCEEEEE-eCcccccccccEEEEeCCEEEEEEEeCCCCcc
Confidence 99999999999999999999999999999888755 4688886 99999999999999999999999999998999
Q ss_pred cccc
Q 028714 149 LDLQ 152 (205)
Q Consensus 149 ~~L~ 152 (205)
++|.
T Consensus 75 ~~L~ 78 (78)
T cd06469 75 EALC 78 (78)
T ss_pred cccC
Confidence 9984
No 14
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.70 E-value=1.2e-16 Score=115.56 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=73.1
Q ss_pred eEEEecCCEEEEEEEeC-CCCCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeC-CEEEEEEEeCC
Q 028714 67 FSWDQDNEKVKIYISLE-GVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKP-TRVVIMLFKAS 144 (205)
Q Consensus 67 y~W~Qs~~~V~I~I~lk-~v~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~-~kIeI~L~K~~ 144 (205)
|.|+|+.+.|+|+|.++ ++.++++.|+|++++|.|.+.+ ..+.+. +.||++|+|++|+|++.+ ++|+|+|.|++
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~---~~~~l~-~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~ 76 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG---GEPLLD-GELYAKVKVDESTWTLEDGKLLEITLEKRN 76 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC---CCceEc-CcccCceeEcCCEEEEeCCCEEEEEEEECC
Confidence 79999999999999996 5689999999999999999864 234554 699999999999999999 99999999999
Q ss_pred C-Ccccccc
Q 028714 145 K-GNWLDLQ 152 (205)
Q Consensus 145 ~-~~W~~L~ 152 (205)
+ .+|++|.
T Consensus 77 ~~~~W~~L~ 85 (85)
T cd06467 77 EGEWWPSLV 85 (85)
T ss_pred CCccccccC
Confidence 8 5999984
No 15
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.64 E-value=1.4e-15 Score=111.92 Aligned_cols=83 Identities=20% Similarity=0.306 Sum_probs=71.9
Q ss_pred eEEEecCCEEEEEEEeC--CCCCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEe--CCEEEEEEEe
Q 028714 67 FSWDQDNEKVKIYISLE--GVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVK--PTRVVIMLFK 142 (205)
Q Consensus 67 y~W~Qs~~~V~I~I~lk--~v~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~--~~kIeI~L~K 142 (205)
|+|+|+++.|+|+|+.+ +.+..++.+.+.++++++.+.-. +..|.+.+ +|+++|+|+. ++++. ++||||+|+|
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~-~~~~~~~~-~L~~~I~~~~-~~~~~~~~~KVEI~L~K 77 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG-DKSYLLHL-DLSNEVQWPC-EVRISTETGKIELVLKK 77 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC-CceEEEee-eccccCCCCc-EEEEcccCceEEEEEEc
Confidence 79999999999999987 45778888888998999988643 77799987 9999998764 88888 5699999999
Q ss_pred CCCCcccccc
Q 028714 143 ASKGNWLDLQ 152 (205)
Q Consensus 143 ~~~~~W~~L~ 152 (205)
+++..|++|.
T Consensus 78 ~e~~~W~~Lg 87 (87)
T cd06490 78 KEPEKWTSLG 87 (87)
T ss_pred CCCCccccCc
Confidence 9999999984
No 16
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.61 E-value=6.1e-15 Score=110.07 Aligned_cols=84 Identities=14% Similarity=0.282 Sum_probs=73.2
Q ss_pred ecceEEEecCCEEEEEEEeC-CCCCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeCCE-EEEEEE
Q 028714 64 LGSFSWDQDNEKVKIYISLE-GVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTR-VVIMLF 141 (205)
Q Consensus 64 i~~y~W~Qs~~~V~I~I~lk-~v~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~k-IeI~L~ 141 (205)
...|.|+||.+.|.|+|+++ |+.++++.|.|++++|.|.+.+ .. +.-++||+.|+|++|+|++.+++ |+|.|.
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g---~~--~l~G~L~~~I~~destWtled~k~l~I~L~ 79 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKG---QE--VLKGKLFDSVVADECTWTLEDRKLIRIVLT 79 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECC---EE--EEcCcccCccCcccCEEEEECCcEEEEEEE
Confidence 35799999999999999986 7899999999999999999843 33 33479999999999999999998 699999
Q ss_pred eCCCC---cccccc
Q 028714 142 KASKG---NWLDLQ 152 (205)
Q Consensus 142 K~~~~---~W~~L~ 152 (205)
|.+.+ +|++|.
T Consensus 80 K~~~~~~~~W~sl~ 93 (93)
T cd06494 80 KSNRDAGNCWKSLL 93 (93)
T ss_pred eCCCCCCccccccC
Confidence 98654 999873
No 17
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.61 E-value=7e-15 Score=111.53 Aligned_cols=92 Identities=21% Similarity=0.342 Sum_probs=77.7
Q ss_pred ecceEEEecCCEEEEEEEeC-CC-CCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeCC-EEEEEE
Q 028714 64 LGSFSWDQDNEKVKIYISLE-GV-VQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPT-RVVIML 140 (205)
Q Consensus 64 i~~y~W~Qs~~~V~I~I~lk-~v-~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~-kIeI~L 140 (205)
..+|.|.||.+.|.|+|+++ ++ .+.++.|+|++++|.|.+.+.+|.. .+.-++||+.|++++|+|.+.++ .|+|+|
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~-~~i~G~L~~~V~~des~Wtled~~~l~I~L 82 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEK-VLMEGEFTHKINTENSLWSLEPGKCVLLSL 82 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCc-eEEeCcccCcccCccceEEEeCCCEEEEEE
Confidence 35799999999999999998 43 6889999999999999997533322 23458999999999999999986 589999
Q ss_pred EeCCCCcccccccccc
Q 028714 141 FKASKGNWLDLQYKED 156 (205)
Q Consensus 141 ~K~~~~~W~~L~~~e~ 156 (205)
.|..+.||++|...+.
T Consensus 83 ~K~~~~wW~~v~~g~~ 98 (102)
T cd06495 83 SKCSEVWWNAVLKGEE 98 (102)
T ss_pred EECCCcccchhhCCCC
Confidence 9998779999987664
No 18
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.57 E-value=2e-14 Score=105.92 Aligned_cols=82 Identities=18% Similarity=0.277 Sum_probs=71.4
Q ss_pred eEEEecCCEEEEEEEeCC---CCCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeCC-EEEEEEEe
Q 028714 67 FSWDQDNEKVKIYISLEG---VVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPT-RVVIMLFK 142 (205)
Q Consensus 67 y~W~Qs~~~V~I~I~lk~---v~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~-kIeI~L~K 142 (205)
|.|.||.+.|.|+|+++. +.+.++.|++++++|.|.+.+ ..+.+. ++||++|++++|+|.+.++ .|+|+|.|
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g---~~~~i~-G~L~~~V~~des~Wtled~~~l~i~L~K 76 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKG---QPPIID-GELYNEVKVEESSWLIEDGKVVTVNLEK 76 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECC---CceEEe-CcccCcccccccEEEEeCCCEEEEEEEE
Confidence 889999999999999963 678999999999999998854 344554 7999999999999999885 69999999
Q ss_pred CCCC-cccccc
Q 028714 143 ASKG-NWLDLQ 152 (205)
Q Consensus 143 ~~~~-~W~~L~ 152 (205)
..++ +|++|.
T Consensus 77 ~~~~~wW~~l~ 87 (87)
T cd06492 77 INKMEWWSRLV 87 (87)
T ss_pred CCCCccccccC
Confidence 9765 999984
No 19
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=99.52 E-value=8.1e-15 Score=106.12 Aligned_cols=40 Identities=48% Similarity=0.627 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhh
Q 028714 2 AEDLVLDLEELRQLRSIAKRPRIVSLINSEIHTLEKLSKE 41 (205)
Q Consensus 2 ~~~l~~Dl~El~~Ll~~a~R~~v~~~L~~ei~~le~~~~~ 41 (205)
++||++||+||++||++|+|+||+++|+.||++||++|+.
T Consensus 5 i~eL~~Dl~El~~Ll~~a~R~rVk~~L~~ei~klE~eI~~ 44 (79)
T PF09032_consen 5 IEELQLDLEELKSLLEQAKRKRVKDLLTNEIRKLETEIKK 44 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999987
No 20
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.8e-14 Score=117.51 Aligned_cols=97 Identities=21% Similarity=0.320 Sum_probs=82.8
Q ss_pred ecceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEc-CCCceeEeeccCCCCCCCCCCcEEEEeCCEEEEEEEe
Q 028714 64 LGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHD-VQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFK 142 (205)
Q Consensus 64 i~~y~W~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~-~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K 142 (205)
.+...|+|+.+.|+++|.+.+ ..++.|++++..|+|+..+ .++..|...| +||++|+|++|++++.++.|...|+|
T Consensus 7 ~p~v~Waqr~~~vyltv~Ved--~~d~~v~~e~~~l~fs~k~~~d~~~~~~~i-ef~~eIdpe~sk~k~~~r~if~i~~K 83 (180)
T KOG3158|consen 7 PPEVKWAQRRDLVYLTVCVED--AKDVHVNLEPSKLTFSCKSGADNHKYENEI-EFFDEIDPEKSKHKRTSRSIFCILRK 83 (180)
T ss_pred CCcchhhhhcCeEEEEEEecc--CccceeeccccEEEEEeccCCCceeeEEee-ehhhhcCHhhccccccceEEEEEEEc
Confidence 345789999999999999986 4788999999999999876 6777788877 99999999999999999999999999
Q ss_pred CCC-Ccccccccccccc---CCCCC
Q 028714 143 ASK-GNWLDLQYKEDKL---KPNLD 163 (205)
Q Consensus 143 ~~~-~~W~~L~~~e~k~---kp~~d 163 (205)
++. .+||+||+...|+ +.+||
T Consensus 84 ~e~~~~WprLtkeK~K~hwLkvDFd 108 (180)
T KOG3158|consen 84 KELGEYWPRLTKEKAKLHWLKVDFD 108 (180)
T ss_pred cccccccchhhhcccccceEEcchh
Confidence 998 5999999755443 55663
No 21
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=99.49 E-value=6.4e-14 Score=114.52 Aligned_cols=127 Identities=19% Similarity=0.301 Sum_probs=99.7
Q ss_pred eecceEEEecCCEEEEEEEeC-CC-CCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeCCEEEE-E
Q 028714 63 TLGSFSWDQDNEKVKIYISLE-GV-VQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVI-M 139 (205)
Q Consensus 63 ~i~~y~W~Qs~~~V~I~I~lk-~v-~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI-~ 139 (205)
...+|.|+|+-..|.|+|+++ |+ .+.+|.|.+..+++.|.+++. +-.+ -++|+++|+++.|+|+|.++++.+ .
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~---~~il-dG~L~~~vk~des~WtiEd~k~i~i~ 92 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQ---PPIL-DGELSHSVKVDESTWTIEDGKMIVIL 92 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCC---Ccee-cCccccccccccceEEecCCEEEEEE
Confidence 456899999999999999985 66 789999999999999988653 3334 489999999999999999996555 4
Q ss_pred EEeCCC-Ccccccccccccc-----CC---CCCC-CCCCcHHHHHHHHHHHhhcccChhhhhhh
Q 028714 140 LFKASK-GNWLDLQYKEDKL-----KP---NLDK-ERDPMAGIMDLMKVSCLLFMLHPHVKALA 193 (205)
Q Consensus 140 L~K~~~-~~W~~L~~~e~k~-----kp---~~d~-~~dp~a~lm~mmK~my~~~~~~~~~~~~~ 193 (205)
|.|.+. .||.+|..++..+ .| +++. +...+|.+-.||....+..++.|++++..
T Consensus 93 l~K~~~~eWW~~ll~gep~ID~~ki~~e~skl~dldeEtra~vekmmfdq~qk~~~~p~sde~~ 156 (179)
T KOG2265|consen 93 LKKSNKMEWWDSLLEGEPEIDTKKIEPEESKLSDLDEETRATVEKMMFDQRQKSMGLPTSDELK 156 (179)
T ss_pred eeccchHHHHHHHHcCCCCCCccccChhhhhhhhccHHHHHhhhccchhHHHhhcCCCCCchhh
Confidence 555443 4999999877543 23 1111 23557889999999999999999888754
No 22
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=99.27 E-value=1.4e-11 Score=106.15 Aligned_cols=92 Identities=23% Similarity=0.332 Sum_probs=81.7
Q ss_pred eecceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEc-CCCceeEeeccCCCCCCCCCCcEEEEeCCEEEEEEE
Q 028714 63 TLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHD-VQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLF 141 (205)
Q Consensus 63 ~i~~y~W~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~-~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~ 141 (205)
.-.||+|.||+.+|+|.|+.++..++.-.|+.....|+|.+.- .+++.|.+.+ +|++.|++++|++.+..++|+|+|+
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~-kLwgvvnve~s~v~m~~tkVEIsl~ 291 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDY-KLWGVVNVEESSVVMGETKVEISLK 291 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccc-eeeeeechhhceEEeecceEEEEEe
Confidence 4469999999999999999998877777788888888888754 6677888886 9999999999999999999999999
Q ss_pred eCCCCccccccccc
Q 028714 142 KASKGNWLDLQYKE 155 (205)
Q Consensus 142 K~~~~~W~~L~~~e 155 (205)
|++++.|++|....
T Consensus 292 k~ep~sWa~Le~p~ 305 (320)
T KOG1667|consen 292 KAEPGSWARLEFPP 305 (320)
T ss_pred ccCCCCcccccCCH
Confidence 99999999999753
No 23
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.20 E-value=7.3e-11 Score=81.27 Aligned_cols=73 Identities=22% Similarity=0.345 Sum_probs=67.3
Q ss_pred EEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcC-------CCceeEeeccCCCCCCCCCCcEEEEeCCEEEEEEE
Q 028714 69 WDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV-------QGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLF 141 (205)
Q Consensus 69 W~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~-------~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~ 141 (205)
|+|+++.|.|+|.++|+.++++.|.|+++.|.|++... .+.+|.+.+ .|+++|+|+.+++++.++.|+|.|.
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~-~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSF-ELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEE-ECCCCcCHHHCEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999998653 246888887 7999999999999999999999998
Q ss_pred e
Q 028714 142 K 142 (205)
Q Consensus 142 K 142 (205)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 7
No 24
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=98.66 E-value=2e-08 Score=88.07 Aligned_cols=146 Identities=14% Similarity=0.125 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhh--cCC-----CCCCCC-CC----------cCCCCc--------cee
Q 028714 8 DLEELRQLRSIAKRPRIVSLINSEIHTLEKLSKE--EGP-----APVPTP-AK----------VSSTPA--------LNY 61 (205)
Q Consensus 8 Dl~El~~Ll~~a~R~~v~~~L~~ei~~le~~~~~--~~~-----~~~~~~-~~----------~~~~~~--------~~~ 61 (205)
|-+--+.-...|+.--|.+-|..=.-.||+.+.. ++| .+..+| .+ -++.+. -.-
T Consensus 94 ~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~~~kkQ~~~Tnk~~I~~vEs~e~~GD~~~~~S~~sP~~~~~~~qE~~ 173 (368)
T COG5091 94 DYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNKKNKKQKDSTNKHTIKPVESIENRGDNNSSHSPISPLKIETAPQESP 173 (368)
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhHhhHhhccccCCCCCCchhhhhccCccccccCCCCccccccCcccCc
Confidence 3344455566777777888887777788876654 222 111111 00 001110 011
Q ss_pred eeecceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeCCEEEEEEE
Q 028714 62 ITLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLF 141 (205)
Q Consensus 62 ~~i~~y~W~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~ 141 (205)
.---+|+|.||...+.|.|+-+.|..++|..-+.++.|++.+.-..+.-+......||++|+|+.+++++.+.++++.|+
T Consensus 174 ~~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l~ 253 (368)
T COG5091 174 KMEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLR 253 (368)
T ss_pred cceeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehhh
Confidence 11235788888888888888888888999999999999999876655544332349999999999999999999999999
Q ss_pred eCCCCccccccc
Q 028714 142 KASKGNWLDLQY 153 (205)
Q Consensus 142 K~~~~~W~~L~~ 153 (205)
|.+...|..|..
T Consensus 254 KV~~v~W~~l~~ 265 (368)
T COG5091 254 KVEMVRWGGLNG 265 (368)
T ss_pred hhhhhhhccccc
Confidence 998889999974
No 25
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.5e-05 Score=63.58 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=72.3
Q ss_pred eeecceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcCC---------------CceeEeeccCCCCCCCCCC
Q 028714 62 ITLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ---------------GKNYRFTSPRLNQEIVPEK 126 (205)
Q Consensus 62 ~~i~~y~W~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~~---------------gk~y~l~i~~L~~~I~pe~ 126 (205)
...+.|+++++++.+.|++.|+|+.+++|.|.+.++.|.|++...+ ...|.-.+ .|...|+++.
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~-~Lp~~v~~~~ 116 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTF-RLPEKVDPEV 116 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEE-ECcccccccc
Confidence 3456799999999999999999999999999999999999986533 23566666 9999999998
Q ss_pred cEEEEeCCEEEEEEEeCCC
Q 028714 127 SKVLVKPTRVVIMLFKASK 145 (205)
Q Consensus 127 S~~kv~~~kIeI~L~K~~~ 145 (205)
.+.+..+|-+.|+|.|..+
T Consensus 117 ~~A~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 117 IKAKYKNGLLTVTLPKAEP 135 (146)
T ss_pred eeeEeeCcEEEEEEecccc
Confidence 8999999999999999765
No 26
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=98.08 E-value=2.9e-05 Score=57.04 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=63.3
Q ss_pred ceEEEecCCEEEEEEEeCCCCCCCcEEEEEee-EEEEEEEcC-----CC----------ceeEeeccCCCCCCCCCCcEE
Q 028714 66 SFSWDQDNEKVKIYISLEGVVQDKMEAEFKQW-SFDVKFHDV-----QG----------KNYRFTSPRLNQEIVPEKSKV 129 (205)
Q Consensus 66 ~y~W~Qs~~~V~I~I~lk~v~~e~V~V~f~~~-sl~v~v~~~-----~g----------k~y~l~i~~L~~~I~pe~S~~ 129 (205)
+++|.++++.+.|++.|||+.++++.|.+..+ .|.|+.... .+ ..|.-.+ .|...|+++.-+.
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i-~LP~~v~~~~i~A 79 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRF-RLPENADADEVKA 79 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEE-ECCCCCCHHHCEE
Confidence 46899999999999999999999999999875 788887421 11 1455555 8899999999999
Q ss_pred EEeCCEEEEEEEe
Q 028714 130 LVKPTRVVIMLFK 142 (205)
Q Consensus 130 kv~~~kIeI~L~K 142 (205)
+..+|-+.|+|.|
T Consensus 80 ~~~nGvL~I~lPK 92 (92)
T cd06472 80 FLENGVLTVTVPK 92 (92)
T ss_pred EEECCEEEEEecC
Confidence 9999999999876
No 27
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=98.01 E-value=1e-05 Score=75.06 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=75.5
Q ss_pred eecceEEEecCCEEEEEEEeCCC-CCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeC-CEEEEEE
Q 028714 63 TLGSFSWDQDNEKVKIYISLEGV-VQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKP-TRVVIML 140 (205)
Q Consensus 63 ~i~~y~W~Qs~~~V~I~I~lk~v-~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~-~kIeI~L 140 (205)
.-+.|.|.|+++.+.|++.++.. ....+.|.+-.+.+.+...+ +++.-+.||..|..+.|.|.|.. +++++.|
T Consensus 288 ~~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~d-----h~~~~g~lyasv~he~s~~ii~ean~Le~sl 362 (596)
T KOG4379|consen 288 GPPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHLD-----HVIFDGELYASVGHELSAFIIAEANGLELSL 362 (596)
T ss_pred CCccceeeeccCcceEEEecccccccceEEEEecCceEEEEeee-----eEEeccchhhhccccchhhhhhhhccceEEE
Confidence 34789999999999999999854 78889999999988887753 45555899999999999999986 8999999
Q ss_pred EeCCCC-ccccccccc
Q 028714 141 FKASKG-NWLDLQYKE 155 (205)
Q Consensus 141 ~K~~~~-~W~~L~~~e 155 (205)
.|++++ .|++|..+.
T Consensus 363 ~K~de~~twprL~~~d 378 (596)
T KOG4379|consen 363 TKADEIQTWPRLFAQD 378 (596)
T ss_pred eecccccccchheeec
Confidence 999766 899998654
No 28
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.84 E-value=0.00011 Score=52.20 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=63.1
Q ss_pred EEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcCC--------------CceeEeeccCCCCCCCCCCcEEEEeCC
Q 028714 69 WDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ--------------GKNYRFTSPRLNQEIVPEKSKVLVKPT 134 (205)
Q Consensus 69 W~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~~--------------gk~y~l~i~~L~~~I~pe~S~~kv~~~ 134 (205)
|.++++.+.|.+.++|++++++.|.+.++.|.|...... ...|.-.+ .|-..|+++..+..+.++
T Consensus 2 i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~-~LP~~vd~~~i~a~~~~G 80 (88)
T cd06464 2 VYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSF-RLPEDVDPDKIKASLENG 80 (88)
T ss_pred cEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEE-ECCCCcCHHHcEEEEeCC
Confidence 678889999999999999999999999999999874321 34577776 799999999999999999
Q ss_pred EEEEEEEe
Q 028714 135 RVVIMLFK 142 (205)
Q Consensus 135 kIeI~L~K 142 (205)
.+.|++.|
T Consensus 81 ~L~I~~pk 88 (88)
T cd06464 81 VLTITLPK 88 (88)
T ss_pred EEEEEEcC
Confidence 99999875
No 29
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.84 E-value=0.00018 Score=53.20 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=61.0
Q ss_pred EEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcC----CC---------ceeEeeccCCCCCCCCCCcEEEEeCC
Q 028714 68 SWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV----QG---------KNYRFTSPRLNQEIVPEKSKVLVKPT 134 (205)
Q Consensus 68 ~W~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~----~g---------k~y~l~i~~L~~~I~pe~S~~kv~~~ 134 (205)
+|.++++.+.|.+.++|+.++++.|.+.++.|.|+.... ++ ..|.-.+ .|-..++++.-+.++.+|
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~-~lP~~vd~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSI-RLPEDVDPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEE-E-STTB-GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEE-cCCCcCCcceEEEEecCC
Confidence 689999999999999999999999999999999887432 11 2455555 888899999999999999
Q ss_pred EEEEEEEeCCC
Q 028714 135 RVVIMLFKASK 145 (205)
Q Consensus 135 kIeI~L~K~~~ 145 (205)
.+.|++.|...
T Consensus 80 vL~I~~pk~~~ 90 (102)
T PF00011_consen 80 VLTITIPKKEE 90 (102)
T ss_dssp EEEEEEEBSSS
T ss_pred EEEEEEEcccc
Confidence 99999999764
No 30
>PF05002 SGS: SGS domain ; InterPro: IPR007699 This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins. Sgt1p is a highly conserved eukaryotic protein that is required for both SCF (Skp1p/Cdc53p-Cullin-F-box)-mediated ubiquitination and kinetochore function in yeast and also plays a role in the cAMP pathway. Calcyclin (S100A6) is a member of the S100A family of calcium binding proteins and appears to play a role in cell proliferation [].; PDB: 1X5M_A 2JTT_D.
Probab=97.82 E-value=7.1e-06 Score=59.95 Aligned_cols=37 Identities=38% Similarity=0.370 Sum_probs=17.6
Q ss_pred CccccccccccccCCCCCCCCCCcHHHHHHHHHHHhhcc
Q 028714 146 GNWLDLQYKEDKLKPNLDKERDPMAGIMDLMKVSCLLFM 184 (205)
Q Consensus 146 ~~W~~L~~~e~k~kp~~d~~~dp~a~lm~mmK~my~~~~ 184 (205)
..|..|+.. +..+..+++.||+++||+|||+||++|=
T Consensus 2 ~~W~~l~~~--~~~~~~~d~~d~~a~lm~lfkkiY~~gD 38 (82)
T PF05002_consen 2 KNWDKLTKK--KEKEEEDDEEDPEASLMNLFKKIYDNGD 38 (82)
T ss_dssp ---SSSBHH----------------SHHHHHHHHHTTS-
T ss_pred CChHHcccc--ccccccccccCchHHHHHHHHHHHccCC
Confidence 379999965 2233334568999999999999999873
No 31
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.77 E-value=0.00019 Score=52.52 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=60.8
Q ss_pred ceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcCC--------C---------ceeEeeccCCCCCCCCCCcE
Q 028714 66 SFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ--------G---------KNYRFTSPRLNQEIVPEKSK 128 (205)
Q Consensus 66 ~y~W~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~~--------g---------k~y~l~i~~L~~~I~pe~S~ 128 (205)
+.+|.++++.+.|.+.|||+.++++.|.+..+.|.|+..... + ..|.-.+ .|- .|+++..+
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~-~lp-~v~~~~i~ 79 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSF-YLP-NVDEEEIK 79 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEE-ECC-CCCHHHCE
Confidence 578999999999999999999999999999999999774321 1 1233334 454 79999999
Q ss_pred EEEeCCEEEEEEEe
Q 028714 129 VLVKPTRVVIMLFK 142 (205)
Q Consensus 129 ~kv~~~kIeI~L~K 142 (205)
.+..++.+.|+|.|
T Consensus 80 A~~~dGvL~I~lPK 93 (93)
T cd06471 80 AKYENGVLKITLPK 93 (93)
T ss_pred EEEECCEEEEEEcC
Confidence 99999999999976
No 32
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.17 E-value=0.0019 Score=46.41 Aligned_cols=68 Identities=12% Similarity=0.209 Sum_probs=57.1
Q ss_pred CEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcCCC--------ceeEeeccCCCCCCCCCCcEEEEeC-CEEEEEEEe
Q 028714 74 EKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQG--------KNYRFTSPRLNQEIVPEKSKVLVKP-TRVVIMLFK 142 (205)
Q Consensus 74 ~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~~g--------k~y~l~i~~L~~~I~pe~S~~kv~~-~kIeI~L~K 142 (205)
+.+.|.+.++|+.+++|.|.+.++.|.|+...... ..|.-.+ .|-..|+++..+.++.+ +.+.|++.|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~-~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRY-QLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEE-ECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 57899999999999999999999999999843211 2466566 89999999999999998 999998875
No 33
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=97.03 E-value=0.0053 Score=44.86 Aligned_cols=72 Identities=8% Similarity=0.136 Sum_probs=60.0
Q ss_pred EEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcCC-----C---ceeEeeccCCCCCCCCCCcEEEEe-CCEEEE
Q 028714 68 SWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ-----G---KNYRFTSPRLNQEIVPEKSKVLVK-PTRVVI 138 (205)
Q Consensus 68 ~W~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~~-----g---k~y~l~i~~L~~~I~pe~S~~kv~-~~kIeI 138 (205)
++..+++.+.|.+.++|+.++++.|++.++.|.|+..... | ..|.=.+ .|-..|++++-+.... ++.+.|
T Consensus 4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f-~LP~~vd~~~v~A~~~~dGvL~I 82 (86)
T cd06475 4 EIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKY-TLPPGVDPTAVTSSLSPDGILTV 82 (86)
T ss_pred eEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEE-ECCCCCCHHHcEEEECCCCeEEE
Confidence 5788999999999999999999999999999999885321 1 2355455 8899999999999997 888888
Q ss_pred EE
Q 028714 139 ML 140 (205)
Q Consensus 139 ~L 140 (205)
.|
T Consensus 83 ~l 84 (86)
T cd06475 83 EA 84 (86)
T ss_pred Ee
Confidence 76
No 34
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=97.03 E-value=0.0041 Score=45.42 Aligned_cols=72 Identities=10% Similarity=0.136 Sum_probs=59.0
Q ss_pred EecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcC---CCc-----eeEeeccCCCCCCCCCCcEEEE-eCCEEEEEE
Q 028714 70 DQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QGK-----NYRFTSPRLNQEIVPEKSKVLV-KPTRVVIML 140 (205)
Q Consensus 70 ~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~---~gk-----~y~l~i~~L~~~I~pe~S~~kv-~~~kIeI~L 140 (205)
..+++.+.|.+.++|+.++++.|++.++.|.|+.... ++. .|.=.+ .|-..|++++-+.++ .+|.+.|++
T Consensus 6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~-~LP~~Vd~~~i~A~~~~dGvL~I~~ 84 (86)
T cd06497 6 RSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRY-RLPSNVDQSAITCSLSADGMLTFSG 84 (86)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEE-ECCCCCChHHeEEEeCCCCEEEEEe
Confidence 4578899999999999999999999999999987431 121 243344 888999999999999 789999998
Q ss_pred Ee
Q 028714 141 FK 142 (205)
Q Consensus 141 ~K 142 (205)
.|
T Consensus 85 PK 86 (86)
T cd06497 85 PK 86 (86)
T ss_pred cC
Confidence 76
No 35
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=97.02 E-value=0.0043 Score=45.06 Aligned_cols=72 Identities=7% Similarity=0.171 Sum_probs=59.2
Q ss_pred EecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEc--CCCc---eeEeeccCCCCCCCCCCcEEEE-eCCEEEEEEEe
Q 028714 70 DQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHD--VQGK---NYRFTSPRLNQEIVPEKSKVLV-KPTRVVIMLFK 142 (205)
Q Consensus 70 ~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~--~~gk---~y~l~i~~L~~~I~pe~S~~kv-~~~kIeI~L~K 142 (205)
..+++.+.|.+.++|+.++++.|++..+.|.|+... ..|. .|.=.+ .|-..|+++.-+.++ .++.+.|++.+
T Consensus 4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~-~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKC-QLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEE-ECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 357788999999999999999999999999998742 2222 455555 899999999999998 88999998864
No 36
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=96.98 E-value=0.0044 Score=45.14 Aligned_cols=72 Identities=4% Similarity=0.103 Sum_probs=58.7
Q ss_pred ecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcC---CCc-----eeEeeccCCCCCCCCCCcEEEEe-CCEEEEEEE
Q 028714 71 QDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QGK-----NYRFTSPRLNQEIVPEKSKVLVK-PTRVVIMLF 141 (205)
Q Consensus 71 Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~---~gk-----~y~l~i~~L~~~I~pe~S~~kv~-~~kIeI~L~ 141 (205)
-+++...|.+.++|+.++++.|.+..+.|.|+.... ++. .|.=.+ .|-..|++++-+.+.. +|.+.|+|.
T Consensus 4 ~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~-~LP~~vd~~~i~A~~~~dGvL~I~lP 82 (84)
T cd06498 4 LEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKY-RIPADVDPLTITSSLSPDGVLTVCGP 82 (84)
T ss_pred eCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEE-ECCCCCChHHcEEEeCCCCEEEEEEe
Confidence 357788999999999999999999999999988431 111 244344 8889999999999996 999999998
Q ss_pred eC
Q 028714 142 KA 143 (205)
Q Consensus 142 K~ 143 (205)
|+
T Consensus 83 k~ 84 (84)
T cd06498 83 RK 84 (84)
T ss_pred CC
Confidence 74
No 37
>PRK10743 heat shock protein IbpA; Provisional
Probab=96.83 E-value=0.013 Score=46.53 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=61.8
Q ss_pred cceEEEe-cCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcC---CCc----------eeEeeccCCCCCCCCCCcEEE
Q 028714 65 GSFSWDQ-DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QGK----------NYRFTSPRLNQEIVPEKSKVL 130 (205)
Q Consensus 65 ~~y~W~Q-s~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~---~gk----------~y~l~i~~L~~~I~pe~S~~k 130 (205)
+.++.++ +++.+.|.+.|||+.+++|.|.+..+.|.|+.... .+. .|.=.+ .|-..|++++ .+
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~-~LP~~Vd~~~--A~ 111 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKF-QLAENIHVRG--AN 111 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEE-ECCCCcccCc--CE
Confidence 5588884 89999999999999999999999999999987421 111 233355 7888999983 88
Q ss_pred EeCCEEEEEEEeC
Q 028714 131 VKPTRVVIMLFKA 143 (205)
Q Consensus 131 v~~~kIeI~L~K~ 143 (205)
.++|.+.|+|.|.
T Consensus 112 ~~dGVL~I~lPK~ 124 (137)
T PRK10743 112 LVNGLLYIDLERV 124 (137)
T ss_pred EeCCEEEEEEeCC
Confidence 9999999999996
No 38
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=96.80 E-value=0.0067 Score=43.94 Aligned_cols=71 Identities=7% Similarity=0.108 Sum_probs=57.5
Q ss_pred ecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcC---CC-----ceeEeeccCCCCCCCCCCcEEEE-eCCEEEEEEE
Q 028714 71 QDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QG-----KNYRFTSPRLNQEIVPEKSKVLV-KPTRVVIMLF 141 (205)
Q Consensus 71 Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~---~g-----k~y~l~i~~L~~~I~pe~S~~kv-~~~kIeI~L~ 141 (205)
.+++.+.|.+.++|+.++++.|.+..+.|.|+.... ++ ..|.=.+ .|-..|+++.-+.++ .+|.+.|++.
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~-~LP~~vd~~~i~A~~~~dGvL~I~~P 82 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRY-RLPPGVDPAAITSSLSADGVLTISGP 82 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEE-ECCCCcChHHeEEEECCCCEEEEEec
Confidence 467889999999999999999999999999988431 12 1244455 888999999999999 5899999987
Q ss_pred e
Q 028714 142 K 142 (205)
Q Consensus 142 K 142 (205)
|
T Consensus 83 K 83 (83)
T cd06478 83 R 83 (83)
T ss_pred C
Confidence 6
No 39
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=96.72 E-value=0.019 Score=42.01 Aligned_cols=73 Identities=12% Similarity=0.241 Sum_probs=55.4
Q ss_pred eEEEec-CCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcCC----C----------ceeEeeccCCCCCCCCCCcEEEE
Q 028714 67 FSWDQD-NEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ----G----------KNYRFTSPRLNQEIVPEKSKVLV 131 (205)
Q Consensus 67 y~W~Qs-~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~~----g----------k~y~l~i~~L~~~I~pe~S~~kv 131 (205)
++=.++ ++...|.+.|||+.++++.|.+..+.|.|+..... + ..|.-.+ .|-..|+.+ +...
T Consensus 3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~-~LP~~vd~~--~A~~ 79 (90)
T cd06470 3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSF-NLADHVKVK--GAEL 79 (90)
T ss_pred eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEE-ECCCCceEC--eeEE
Confidence 344455 48999999999999999999999999999863211 1 2355444 777788875 7888
Q ss_pred eCCEEEEEEEe
Q 028714 132 KPTRVVIMLFK 142 (205)
Q Consensus 132 ~~~kIeI~L~K 142 (205)
.++.+.|+|.+
T Consensus 80 ~~GvL~I~l~~ 90 (90)
T cd06470 80 ENGLLTIDLER 90 (90)
T ss_pred eCCEEEEEEEC
Confidence 99999998863
No 40
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=96.51 E-value=0.022 Score=45.64 Aligned_cols=76 Identities=13% Similarity=0.238 Sum_probs=59.7
Q ss_pred ceEEEe-cCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcC---CCc----------eeEeeccCCCCCCCCCCcEEEE
Q 028714 66 SFSWDQ-DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QGK----------NYRFTSPRLNQEIVPEKSKVLV 131 (205)
Q Consensus 66 ~y~W~Q-s~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~---~gk----------~y~l~i~~L~~~I~pe~S~~kv 131 (205)
.++=.+ +++.+.|.+.|+|+++++|.|.+..+.|.|+.... .+. .|.-.+ .|-..|+++ ..+.
T Consensus 34 ~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f-~LP~~vd~~--~A~~ 110 (142)
T PRK11597 34 PYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSF-TLAENMEVS--GATF 110 (142)
T ss_pred cEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEE-ECCCCcccC--cCEE
Confidence 355565 57789999999999999999999999999988521 122 244444 688889987 5889
Q ss_pred eCCEEEEEEEeCC
Q 028714 132 KPTRVVIMLFKAS 144 (205)
Q Consensus 132 ~~~kIeI~L~K~~ 144 (205)
.+|-+.|+|.|..
T Consensus 111 ~nGVL~I~lPK~~ 123 (142)
T PRK11597 111 VNGLLHIDLIRNE 123 (142)
T ss_pred cCCEEEEEEeccC
Confidence 9999999999963
No 41
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=96.32 E-value=0.029 Score=40.73 Aligned_cols=70 Identities=10% Similarity=0.164 Sum_probs=56.1
Q ss_pred cCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcC---CCc-----eeEeeccCCCCCCCCCCcEEEEe-CCEEEEEEEe
Q 028714 72 DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QGK-----NYRFTSPRLNQEIVPEKSKVLVK-PTRVVIMLFK 142 (205)
Q Consensus 72 s~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~---~gk-----~y~l~i~~L~~~I~pe~S~~kv~-~~kIeI~L~K 142 (205)
.++...|.+.++|+.++++.|++.++.|.|+.... .+. .|.=.+ .|-..|+++.-+-+.. +|.+.|.+.|
T Consensus 5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~-~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTY-ILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEE-ECCCCCChhhEEEEecCCCEEEEEecC
Confidence 46678899999999999999999999999987431 122 233344 7889999999999996 8999998864
No 42
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=96.11 E-value=0.03 Score=40.91 Aligned_cols=68 Identities=12% Similarity=0.219 Sum_probs=54.3
Q ss_pred cCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcC-----C-C------ceeEeeccCCCCCCCCCCcEEEE-eCCEEEE
Q 028714 72 DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV-----Q-G------KNYRFTSPRLNQEIVPEKSKVLV-KPTRVVI 138 (205)
Q Consensus 72 s~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~-----~-g------k~y~l~i~~L~~~I~pe~S~~kv-~~~kIeI 138 (205)
..+.+.|.+.++|+.+++|.|.+..+.|.|+.... + + ..|.=.+ .|-..|+++.-+..+ .++.+.|
T Consensus 5 ~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~-~LP~~Vd~~~i~A~~~~dGvL~I 83 (87)
T cd06481 5 GKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREA-QLPEHVDPEAVTCSLSPSGHLHI 83 (87)
T ss_pred ccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEE-ECCCCcChHHeEEEeCCCceEEE
Confidence 46788999999999999999999999999987421 1 1 2244455 788999999999999 7888888
Q ss_pred EE
Q 028714 139 ML 140 (205)
Q Consensus 139 ~L 140 (205)
.+
T Consensus 84 ~~ 85 (87)
T cd06481 84 RA 85 (87)
T ss_pred Ec
Confidence 76
No 43
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=95.38 E-value=0.2 Score=44.20 Aligned_cols=66 Identities=15% Similarity=0.240 Sum_probs=56.8
Q ss_pred cCCEEEEEEEeCCC-CCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeC--CEEEEEEE
Q 028714 72 DNEKVKIYISLEGV-VQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKP--TRVVIMLF 141 (205)
Q Consensus 72 s~~~V~I~I~lk~v-~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~--~kIeI~L~ 141 (205)
..+.+.|.|.|+++ +..++.+++.++.|.|.+.+. .|.|.+ .|-.+|+++.++.+... ..+.|+|.
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~---~y~L~l-~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP---KYRLDL-PLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC---ceEEEc-cCCCcccCCCceEEEccCCCEEEEEEE
Confidence 47899999999999 889999999999999998643 699987 99999999998877654 57888873
No 44
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=95.03 E-value=0.13 Score=37.80 Aligned_cols=67 Identities=18% Similarity=0.134 Sum_probs=52.4
Q ss_pred ecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcC-----CC-cee-----EeeccCCCCCCCCCCcEEEEeCC-EEEE
Q 028714 71 QDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV-----QG-KNY-----RFTSPRLNQEIVPEKSKVLVKPT-RVVI 138 (205)
Q Consensus 71 Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~-----~g-k~y-----~l~i~~L~~~I~pe~S~~kv~~~-kIeI 138 (205)
..++.+.|++.|||+.+++|.|.+..+.|.|+.... .+ +.| .=.+ .|-..|++++-+.+.+++ .+.|
T Consensus 5 ~~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f-~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 5 CDSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEF-SLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred ccCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEE-ECCCCcChHHcEEEEcCCCEEEE
Confidence 356789999999999999999999999999998431 12 122 2244 788899999999999887 6665
No 45
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=94.71 E-value=0.25 Score=35.93 Aligned_cols=68 Identities=6% Similarity=0.062 Sum_probs=52.6
Q ss_pred ecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcC---CCc-----eeEeeccCCCCCCCCCCcEEEE-eCCEEEEE
Q 028714 71 QDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QGK-----NYRFTSPRLNQEIVPEKSKVLV-KPTRVVIM 139 (205)
Q Consensus 71 Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~---~gk-----~y~l~i~~L~~~I~pe~S~~kv-~~~kIeI~ 139 (205)
.+++...|.+.++|+.++++.|.+..+.|.|+.... +.. .|.=.+ .|-..|++++-+.+. .+|.+.|.
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~-~LP~~Vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQY-QLPDGVEHKDLSAMLCHDGILVVE 80 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEE-ECCCCcchheEEEEEcCCCEEEEE
Confidence 356788999999999999999999999999998421 111 233344 788999999988887 57777665
No 46
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=91.61 E-value=1.7 Score=36.15 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=50.8
Q ss_pred cCC-EEEEEEEeCCCCCCC-cEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCcEEEEeCCEEEEEEEeCCCC
Q 028714 72 DNE-KVKIYISLEGVVQDK-MEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKG 146 (205)
Q Consensus 72 s~~-~V~I~I~lk~v~~e~-V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~ 146 (205)
.++ .+.|...||||..++ +.|.+......|.+.. ++ +|.=.+ .|-.+ .++.-.+.++++.++|.|.+.++.
T Consensus 99 ~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~-~~-~~~krv-~L~~~-~~e~~~~t~nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 99 RDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRV-GE-KYLKRV-ALPWP-DPEITSATFNNGILEIRIRRTEES 171 (177)
T ss_pred cCCCcEEEEEeCCCCCcccceeeEeecCCceEEEec-CC-ceEeeE-ecCCC-ccceeeEEEeCceEEEEEeecCCC
Confidence 444 688999999997777 8888886665565543 22 243334 66666 466668899999999999997753
No 47
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=87.67 E-value=4.5 Score=29.92 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=51.9
Q ss_pred cCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcC-----CC---ceeEeeccCCCCCCCCCCcEEEEe-CCEEEEEE
Q 028714 72 DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV-----QG---KNYRFTSPRLNQEIVPEKSKVLVK-PTRVVIML 140 (205)
Q Consensus 72 s~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~-----~g---k~y~l~i~~L~~~I~pe~S~~kv~-~~kIeI~L 140 (205)
+++.-.|.+.+.|..++++.|+..++.|.|+.... .| +.|.=.+ .|-..|+++.-+-.+. ++.+.|..
T Consensus 13 ~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~-~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 13 SSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKI-QLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEE-ECCCCCCchhEEEEeCCCCeEEEEc
Confidence 45566788999999999999999999999988421 11 2344444 7889999999888888 67777754
No 48
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=70.41 E-value=6.8 Score=26.32 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhc-----chhHH---HHHHHHHHHHhh
Q 028714 7 LDLEELRQLRSIAK-----RPRIV---SLINSEIHTLEK 37 (205)
Q Consensus 7 ~Dl~El~~Ll~~a~-----R~~v~---~~L~~ei~~le~ 37 (205)
-||..++.|+.+|. ++.+. +.|..||.++|.
T Consensus 14 GDLa~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 14 GDLAQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred CcHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 48999999998854 45554 456778888874
No 49
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=57.60 E-value=18 Score=23.99 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHH-----HHhcchhHHHHHHHHHHHHhhhhhh
Q 028714 4 DLVLDLEELRQLR-----SIAKRPRIVSLINSEIHTLEKLSKE 41 (205)
Q Consensus 4 ~l~~Dl~El~~Ll-----~~a~R~~v~~~L~~ei~~le~~~~~ 41 (205)
++---|+|++.++ +....+.+.++|...+..|+..|..
T Consensus 12 ~lGfsL~eI~~~l~l~~~~~~~~~~~~~~l~~~~~~i~~~i~~ 54 (65)
T PF09278_consen 12 ELGFSLEEIRELLELYDQGDPPCADRRALLEEKLEEIEEQIAE 54 (65)
T ss_dssp HTT--HHHHHHHHHHCCSHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445689999999 5577888899999999999988764
No 50
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=50.05 E-value=30 Score=24.86 Aligned_cols=56 Identities=14% Similarity=0.389 Sum_probs=30.1
Q ss_pred EEEEEEeCCCCCCCcEEEEEe-eEEEEEEEcCCCce-eEeeccCCCCCCCCCCcEEEEeCC
Q 028714 76 VKIYISLEGVVQDKMEAEFKQ-WSFDVKFHDVQGKN-YRFTSPRLNQEIVPEKSKVLVKPT 134 (205)
Q Consensus 76 V~I~I~lk~v~~e~V~V~f~~-~sl~v~v~~~~gk~-y~l~i~~L~~~I~pe~S~~kv~~~ 134 (205)
|.+.+.+.+...+.+.+.|.. ..++|.+.+.+|+. |+++-+..|-.+.- ...+.++
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~---~~~l~pG 59 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQ---EETLEPG 59 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------E---EEEE-TT
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheee---EEEECCC
Confidence 677788887778899999976 58999998777654 77776666665542 4444444
No 51
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=48.13 E-value=32 Score=25.13 Aligned_cols=34 Identities=12% Similarity=0.285 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhh
Q 028714 8 DLEELRQLRSIAKRPRIVSLINSEIHTLEKLSKE 41 (205)
Q Consensus 8 Dl~El~~Ll~~a~R~~v~~~L~~ei~~le~~~~~ 41 (205)
-|+|++.++....-+.+..+|...+..|+.+|..
T Consensus 59 ~l~eI~~~l~~~~~~~~~~~l~~~~~~l~~~i~~ 92 (97)
T cd04782 59 SLKEIKDYLDNRNPDELIELLKKQEKEIKEEIEE 92 (97)
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999998877788999999999999988875
No 52
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=38.22 E-value=58 Score=24.04 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhc---------chhHHHHHHHHHHHHhhhhhh
Q 028714 7 LDLEELRQLRSIAK---------RPRIVSLINSEIHTLEKLSKE 41 (205)
Q Consensus 7 ~Dl~El~~Ll~~a~---------R~~v~~~L~~ei~~le~~~~~ 41 (205)
--|+|++.+++... ++.++.+|...+..|+.++..
T Consensus 56 ~sL~eI~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 99 (107)
T cd04777 56 FSLIEIQKIFSYKRLTKSRTHEDQDYYKSFLKNKKDELEKEIED 99 (107)
T ss_pred CCHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899887632 356889999999999988765
No 53
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=33.25 E-value=70 Score=25.95 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=31.6
Q ss_pred EEEEEeCCCCCCCcEEEEEeeEEEEEEEc--CCCceeEeeccCCCCCCCCCCcEEEEeCCEE
Q 028714 77 KIYISLEGVVQDKMEAEFKQWSFDVKFHD--VQGKNYRFTSPRLNQEIVPEKSKVLVKPTRV 136 (205)
Q Consensus 77 ~I~I~lk~v~~e~V~V~f~~~sl~v~v~~--~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kI 136 (205)
++++++|+. .+..+-|+++++.|-+.+ ..+..-.| +.++.++|++.++.|
T Consensus 71 t~t~yiKNt--G~~~~~fd~~sitVliDG~iv~~a~~~~--------~~~~gs~i~l~PG~V 122 (154)
T COG3354 71 TYTFYIKNT--GSDSIAFDNTSITVLIDGNIVTPAYVTF--------TSVNGSSIRLSPGQV 122 (154)
T ss_pred EEEEEEecC--CCcccccCCCeEEEEEcCcEeccceEEE--------EecCCCeeEecCCce
Confidence 345566765 345567999999999866 12222222 456788888777644
No 54
>PF10759 DUF2587: Protein of unknown function (DUF2587); InterPro: IPR019695 This entry represents proteins found Actinobacteria sp. The function is not known.
Probab=32.55 E-value=36 Score=27.81 Aligned_cols=32 Identities=31% Similarity=0.314 Sum_probs=26.2
Q ss_pred HHHHHH-HHHHhcchhHHHHHHHHHHHHhhhhh
Q 028714 9 LEELRQ-LRSIAKRPRIVSLINSEIHTLEKLSK 40 (205)
Q Consensus 9 l~El~~-Ll~~a~R~~v~~~L~~ei~~le~~~~ 40 (205)
|+|+++ =|.-|.|.|++++=..-|+.||.-+.
T Consensus 43 LEEVraApLDeAsR~RL~eIH~~SI~ELedgLa 75 (169)
T PF10759_consen 43 LEEVRAAPLDEASRNRLREIHERSIKELEDGLA 75 (169)
T ss_pred HHHHHcCcCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777775 36679999999999999999996544
No 55
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=32.45 E-value=1.5e+02 Score=21.84 Aligned_cols=19 Identities=5% Similarity=0.221 Sum_probs=7.5
Q ss_pred eEEEecCCEEEEEEEeCCC
Q 028714 67 FSWDQDNEKVKIYISLEGV 85 (205)
Q Consensus 67 y~W~Qs~~~V~I~I~lk~v 85 (205)
..=.++++++.|++.+.+.
T Consensus 42 v~~~~npNYLFv~L~i~~a 60 (88)
T PF09087_consen 42 VVKTDNPNYLFVYLDISDA 60 (88)
T ss_dssp EEE-SSTTEEEEEEEE-T-
T ss_pred EEecCCCCEEEEEEecCCC
Confidence 3334445555555544433
No 56
>PF12510 Smoothelin: Smoothelin cytoskeleton protein; InterPro: IPR022189 This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00307 from PFAM. Smoothelin is a cytoskeletal protein specifically expressed in differentiated smooth muscle cells and has been shown to co-localize with smooth muscle alpha actin.
Probab=31.82 E-value=1.1e+02 Score=20.63 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHh
Q 028714 7 LDLEELRQLRSIAKRPRIVSLINSEIHTLE 36 (205)
Q Consensus 7 ~Dl~El~~Ll~~a~R~~v~~~L~~ei~~le 36 (205)
.|++.|..||+.++==--+.++-+.|+.|-
T Consensus 22 ~De~~L~kmLe~~~dyeeRr~IRaaiR~lr 51 (54)
T PF12510_consen 22 EDEEVLEKMLEATTDYEERRRIRAAIRELR 51 (54)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 489999999998764444444445555554
No 57
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.28 E-value=1.4e+02 Score=28.00 Aligned_cols=66 Identities=18% Similarity=0.196 Sum_probs=40.5
Q ss_pred EEEEEeCCCCCCCcEEEEEeeEEEEEEEc--CCCceeEeeccCCCCCCCCCCcEEEEeCCEEEEEEEeCCCC
Q 028714 77 KIYISLEGVVQDKMEAEFKQWSFDVKFHD--VQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKG 146 (205)
Q Consensus 77 ~I~I~lk~v~~e~V~V~f~~~sl~v~v~~--~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~ 146 (205)
++.|+|+|-..-.+...+.+. |.+.+.- +.-..|.- +|-.+..|+.-++.+.+.++.+++.|+...
T Consensus 71 tV~Vtl~G~ns~~~~~~~~~d-FkV~ADLt~a~~Gt~ev---kl~ve~l~~~ltvsV~P~~~~Vti~kk~tk 138 (403)
T COG4856 71 TVTVTLKGPNSIVLKSEKPED-FKVVADLTHAGVGTHEV---KLQVEGLPDGLTVSVNPEKATVTIEKKVTK 138 (403)
T ss_pred EEEEEEeCCcceeeeeecCcC-eEEEEEhhhcCCCceEe---eeEeecCCCCceEEEccceeEEEEeeeeEE
Confidence 455556653223333333333 6666532 22122332 777888899999999999999999987754
No 58
>PRK06746 peptide chain release factor 2; Provisional
Probab=26.52 E-value=1.3e+02 Score=27.51 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhh
Q 028714 4 DLVLDLEELRQLRSIAKRPRIVSLINSEIHTLEKLSKE 41 (205)
Q Consensus 4 ~l~~Dl~El~~Ll~~a~R~~v~~~L~~ei~~le~~~~~ 41 (205)
+...|++++..|+..+.-+.+++.+..|+..|+.++..
T Consensus 35 ~~~~d~~~~~el~~~~~d~e~~~~a~~e~~~l~~~l~~ 72 (326)
T PRK06746 35 ETFENLEITHELLKEEYDEDLHEELESEVKGLIQEMNE 72 (326)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 45577788888876667788999999999999877665
No 59
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=26.38 E-value=1.2e+02 Score=22.72 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhc-----chhHHHHHHHHHHHHhhhhhh
Q 028714 7 LDLEELRQLRSIAK-----RPRIVSLINSEIHTLEKLSKE 41 (205)
Q Consensus 7 ~Dl~El~~Ll~~a~-----R~~v~~~L~~ei~~le~~~~~ 41 (205)
--|+|++.++.... -..+..+|...+..|+.++..
T Consensus 58 ~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 97 (123)
T cd04770 58 FSLAEIRELLSLRDDGAAPCAEVRALLEEKLAEVEAKIAE 97 (123)
T ss_pred CCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888887643 256788899999888887765
No 60
>PTZ00204 hypothetical protein; Provisional
Probab=26.32 E-value=65 Score=24.41 Aligned_cols=61 Identities=28% Similarity=0.395 Sum_probs=36.7
Q ss_pred cceEEEecCCEEEEE-EEeCCCCCCCcEEEEEeeEEEEEEEcCC--CceeEeeccCCCCCCCCCCcEEEEe
Q 028714 65 GSFSWDQDNEKVKIY-ISLEGVVQDKMEAEFKQWSFDVKFHDVQ--GKNYRFTSPRLNQEIVPEKSKVLVK 132 (205)
Q Consensus 65 ~~y~W~Qs~~~V~I~-I~lk~v~~e~V~V~f~~~sl~v~v~~~~--gk~y~l~i~~L~~~I~pe~S~~kv~ 132 (205)
.+-+|+-++.+|.+. |.|. ||..+=.+..-++.++... -++|.+ --|-+.+...+-+|+.+
T Consensus 55 ~sedwdysn~fvvvc~v~le-----nia~nereg~chltfhaats~h~dyml--valrgkvvkakvsfrfk 118 (120)
T PTZ00204 55 ESEDWDYSNSFVVVCAVLLE-----NIAANEREGKCHLTFHAATSMHKNYML--VALRGKVVKAKVSFRFK 118 (120)
T ss_pred CcccccccCceEEEEeehhh-----hhccccccceEEEEEeehhcccccEEE--EEEeCeEEEEEEEEEee
Confidence 467999999999875 3344 4444444444445544332 245655 26777777666666554
No 61
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=26.31 E-value=1.1e+02 Score=22.18 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhh
Q 028714 7 LDLEELRQLRSIAKRPRIVSLINSEIHTLEKLSKE 41 (205)
Q Consensus 7 ~Dl~El~~Ll~~a~R~~v~~~L~~ei~~le~~~~~ 41 (205)
--|+|++.++.... ..+..+|...+..|+.++..
T Consensus 58 ~~l~eI~~~l~~~~-~~~~~~l~~~~~~l~~~i~~ 91 (96)
T cd04788 58 FSLREIGRALDGPD-FDPLELLRRQLARLEEQLEL 91 (96)
T ss_pred CCHHHHHHHHhCCC-hhHHHHHHHHHHHHHHHHHH
Confidence 35789999998654 37889999999999988765
No 62
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=25.96 E-value=1.1e+02 Score=20.92 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 028714 2 AEDLVLDLEELRQLRSIAKRPRIVSLINSE 31 (205)
Q Consensus 2 ~~~l~~Dl~El~~Ll~~a~R~~v~~~L~~e 31 (205)
.+.++..+.+.++++..|++|.=++....-
T Consensus 7 ~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia 36 (61)
T PRK09400 7 QENVKNFLEDYKRVLKVARKPTREEFLLVA 36 (61)
T ss_pred HHhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 467888999999999999999988876543
No 63
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=25.82 E-value=1.2e+02 Score=22.57 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhh
Q 028714 8 DLEELRQLRSIAKRPRIVSLINSEIHTLEKLSKE 41 (205)
Q Consensus 8 Dl~El~~Ll~~a~R~~v~~~L~~ei~~le~~~~~ 41 (205)
-|+|++.|+....-+.+..+|...++.|+.++..
T Consensus 60 sl~~i~~l~~~~~~~~~~~~l~~~~~~l~~~i~~ 93 (108)
T cd01107 60 PLEEIKEILDADNDDELRKLLREKLAELEAEIEE 93 (108)
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888765578999999999999988765
No 64
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=25.69 E-value=1.2e+02 Score=23.31 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcc-----hhHHHHHHHHHHHHhhhhhh
Q 028714 8 DLEELRQLRSIAKR-----PRIVSLINSEIHTLEKLSKE 41 (205)
Q Consensus 8 Dl~El~~Ll~~a~R-----~~v~~~L~~ei~~le~~~~~ 41 (205)
=|+|++.+++.... +.++.+|...+..|+.+|..
T Consensus 59 sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 97 (133)
T cd04787 59 SLKDIKEILSHADQGESPCPMVRRLIEQRLAETERRIKE 97 (133)
T ss_pred CHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888876432 35788888888888877765
No 65
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.40 E-value=38 Score=31.97 Aligned_cols=82 Identities=16% Similarity=0.069 Sum_probs=56.9
Q ss_pred cceEEEecCCEEEEEEEeCCCCCCCcEEEEEeeEEEEEEEcCCCceeEeeccCCCCCCCCCCc---EEEEeCCEEEEEEE
Q 028714 65 GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKS---KVLVKPTRVVIMLF 141 (205)
Q Consensus 65 ~~y~W~Qs~~~V~I~I~lk~v~~e~V~V~f~~~sl~v~v~~~~gk~y~l~i~~L~~~I~pe~S---~~kv~~~kIeI~L~ 141 (205)
++|.-.|.+++++|.|+.+-....++.+...++.+.+++. +|-+.+ .+.+.+..+.. ++-.+++.+.|++.
T Consensus 4 p~f~itqdee~~~L~I~~p~~~a~~le~~a~~nm~~f~~~-----pyflrl-~~p~~~~~d~~~n~s~d~kd~~~~vK~~ 77 (466)
T KOG3247|consen 4 PQFAITQDEEFCTLIIPRPLNQASKLEIDAAANMASFSAG-----PYFLRL-AGPGMVEDDARPNASYDAKDGYAHVKVP 77 (466)
T ss_pred ceeeeeecCceEEEEeeccccchhccchhhHhhhhhhccc-----hhHHhh-cCcchhhhhccccCccccccceeEEeec
Confidence 5688889999999999988556667766667777766653 343332 44444443332 45677899999999
Q ss_pred eCCCC-cccccc
Q 028714 142 KASKG-NWLDLQ 152 (205)
Q Consensus 142 K~~~~-~W~~L~ 152 (205)
|..++ ..+.|.
T Consensus 78 K~~~~e~F~~Ld 89 (466)
T KOG3247|consen 78 KFHPGEHFSDLD 89 (466)
T ss_pred CCCccccccchh
Confidence 98876 677654
No 66
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=25.26 E-value=1.3e+02 Score=24.95 Aligned_cols=80 Identities=11% Similarity=0.268 Sum_probs=55.6
Q ss_pred cceEE--EecCCEEEEEEEeCCCCCCCcEEEEEeeE-EEEEEEcC-------CCc----------eeEeeccCCCCCCCC
Q 028714 65 GSFSW--DQDNEKVKIYISLEGVVQDKMEAEFKQWS-FDVKFHDV-------QGK----------NYRFTSPRLNQEIVP 124 (205)
Q Consensus 65 ~~y~W--~Qs~~~V~I~I~lk~v~~e~V~V~f~~~s-l~v~v~~~-------~gk----------~y~l~i~~L~~~I~p 124 (205)
-+..| ..+.+...+.+.++|+..++++|.+.+.. +.++.... .|+ .|.-.+ .|-..++.
T Consensus 83 ~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~-~lPenv~~ 161 (196)
T KOG0710|consen 83 ARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRF-ELPENVDV 161 (196)
T ss_pred ccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeee-cCCccccH
Confidence 45678 58888999999999999999999999985 66655321 111 122233 56666666
Q ss_pred CCcEEEEeCCEEEEEEEeCCC
Q 028714 125 EKSKVLVKPTRVVIMLFKASK 145 (205)
Q Consensus 125 e~S~~kv~~~kIeI~L~K~~~ 145 (205)
+.-+..+.++-+.|++.|...
T Consensus 162 d~ikA~~~nGVL~VvvpK~~~ 182 (196)
T KOG0710|consen 162 DEIKAEMENGVLTVVVPKLEP 182 (196)
T ss_pred HHHHHHhhCCeEEEEEecccc
Confidence 666666777777777777654
No 67
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=24.74 E-value=1.2e+02 Score=23.54 Aligned_cols=34 Identities=21% Similarity=0.448 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHh----cchhHHHHHHHHHHHHhhhhhh
Q 028714 8 DLEELRQLRSIA----KRPRIVSLINSEIHTLEKLSKE 41 (205)
Q Consensus 8 Dl~El~~Ll~~a----~R~~v~~~L~~ei~~le~~~~~ 41 (205)
-|+|++.++... ....+.++|...+..|+.++..
T Consensus 59 sL~eI~~ll~~~~~~~~~~~~~~~l~~k~~~i~~~i~~ 96 (131)
T cd04786 59 SLDEIRQLLPADASNWQHDELLAALERKVADIEALEAR 96 (131)
T ss_pred CHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 578899998743 3467888899998888877664
No 68
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=23.85 E-value=1.5e+02 Score=27.37 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhh
Q 028714 3 EDLVLDLEELRQLRSIAKRPRIVSLINSEIHTLEKLSKE 41 (205)
Q Consensus 3 ~~l~~Dl~El~~Ll~~a~R~~v~~~L~~ei~~le~~~~~ 41 (205)
..++.||++.+.+|...+=|..+++...||..++..+..
T Consensus 56 ~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~~~~~~~ 94 (363)
T COG0216 56 KKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEE 94 (363)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999988876654
No 69
>smart00340 HALZ homeobox associated leucin zipper.
Probab=23.77 E-value=54 Score=21.09 Aligned_cols=13 Identities=38% Similarity=0.644 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH
Q 028714 4 DLVLDLEELRQLR 16 (205)
Q Consensus 4 ~l~~Dl~El~~Ll 16 (205)
-|+.+|+||++|-
T Consensus 23 RL~ke~~eLralk 35 (44)
T smart00340 23 RLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHhcc
Confidence 4788899988874
No 70
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=23.68 E-value=1.6e+02 Score=20.20 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 028714 2 AEDLVLDLEELRQLRSIAKRPRIVSLINSE 31 (205)
Q Consensus 2 ~~~l~~Dl~El~~Ll~~a~R~~v~~~L~~e 31 (205)
++.++..+.|.++++..|+.|.=++..+.-
T Consensus 3 ~e~~~~f~k~~~r~lk~~~KPd~~Ef~~ia 32 (61)
T TIGR00327 3 IEAPVEFIKEGTRVLAVCKKPDLEEYLKVA 32 (61)
T ss_pred cchHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 577899999999999999999998887654
No 71
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=23.33 E-value=1e+02 Score=18.96 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHhcchh
Q 028714 2 AEDLVLDLEELRQLRSIAKRPR 23 (205)
Q Consensus 2 ~~~l~~Dl~El~~Ll~~a~R~~ 23 (205)
.|||+.=+.+|+.-+...+|||
T Consensus 14 peel~~Y~~~L~~Y~~lvtRpR 35 (36)
T PF00159_consen 14 PEELAQYYAALRHYINLVTRPR 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHccCC
Confidence 4788999999999999999997
No 72
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=22.31 E-value=1.8e+02 Score=20.29 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=9.8
Q ss_pred EEEEEEEcCCCceeEeec
Q 028714 98 SFDVKFHDVQGKNYRFTS 115 (205)
Q Consensus 98 sl~v~v~~~~gk~y~l~i 115 (205)
..+|.+.+.+|+.|.+.+
T Consensus 55 ~yev~~~~~dG~~~ev~v 72 (83)
T PF13670_consen 55 CYEVEARDKDGKKVEVYV 72 (83)
T ss_pred EEEEEEEECCCCEEEEEE
Confidence 455555555565555544
No 73
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.93 E-value=1.6e+02 Score=22.33 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhc-----chhHHHHHHHHHHHHhhhhhh
Q 028714 7 LDLEELRQLRSIAK-----RPRIVSLINSEIHTLEKLSKE 41 (205)
Q Consensus 7 ~Dl~El~~Ll~~a~-----R~~v~~~L~~ei~~le~~~~~ 41 (205)
--|+|++.++.... .+.+..+|...+..|+.+|..
T Consensus 58 ~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 97 (127)
T cd04784 58 MSLDEIRTLLQLQDDPEASCAEVNALIDEHLAHVRARIAE 97 (127)
T ss_pred CCHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888887543 357888898888888877765
No 74
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=21.92 E-value=1.4e+02 Score=22.78 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHh-----cchhHHHHHHHHHHHHhhhhhh
Q 028714 8 DLEELRQLRSIA-----KRPRIVSLINSEIHTLEKLSKE 41 (205)
Q Consensus 8 Dl~El~~Ll~~a-----~R~~v~~~L~~ei~~le~~~~~ 41 (205)
=|+|++.+++.. +.+.+..+|...+..|+.+|..
T Consensus 59 sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 97 (127)
T TIGR02047 59 SLAEIRQLLRYQDKPEKSCSDVNALLDEHISHVRARIIK 97 (127)
T ss_pred CHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888742 2356888999999999887765
No 75
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=21.92 E-value=1.2e+02 Score=20.93 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=20.6
Q ss_pred HHHHHhcchhHHHHHHHHHHHHhhhhhh
Q 028714 14 QLRSIAKRPRIVSLINSEIHTLEKLSKE 41 (205)
Q Consensus 14 ~Ll~~a~R~~v~~~L~~ei~~le~~~~~ 41 (205)
+||+-+.=..=..+|+.||.+++.+++.
T Consensus 23 sllsV~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 23 SLLSVAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555455578899999999998876
No 76
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=21.69 E-value=1.5e+02 Score=22.59 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=24.8
Q ss_pred HHHHHHHHHHH-----hcchhHHHHHHHHHHHHhhhhhh
Q 028714 8 DLEELRQLRSI-----AKRPRIVSLINSEIHTLEKLSKE 41 (205)
Q Consensus 8 Dl~El~~Ll~~-----a~R~~v~~~L~~ei~~le~~~~~ 41 (205)
-|+|++.++.. ...+.+..+|...+..|+.+|..
T Consensus 59 sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 97 (127)
T TIGR02044 59 SLEECKELLNLWNDPNRTSADVKARTLEKVAEIERKISE 97 (127)
T ss_pred CHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888874 23466778888888888877665
No 77
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=21.53 E-value=1.7e+02 Score=22.31 Aligned_cols=35 Identities=29% Similarity=0.386 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHh-----cchhHHHHHHHHHHHHhhhhhh
Q 028714 7 LDLEELRQLRSIA-----KRPRIVSLINSEIHTLEKLSKE 41 (205)
Q Consensus 7 ~Dl~El~~Ll~~a-----~R~~v~~~L~~ei~~le~~~~~ 41 (205)
--|+|++.++... +.+.+..+|...+..|+.+|..
T Consensus 58 ~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 97 (127)
T cd01108 58 FSLEEIRELLALWRDPSRASADVKALALEHIAELERKIAE 97 (127)
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888752 3456788888888888877765
No 78
>cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.39 E-value=1.6e+02 Score=21.38 Aligned_cols=34 Identities=9% Similarity=0.277 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhh
Q 028714 7 LDLEELRQLRSIAKRPRIVSLINSEIHTLEKLSKE 41 (205)
Q Consensus 7 ~Dl~El~~Ll~~a~R~~v~~~L~~ei~~le~~~~~ 41 (205)
--|+|++.++.... ..+..+|...+..|+.++..
T Consensus 58 ~~l~~I~~~l~~~~-~~~~~~l~~~~~~l~~~i~~ 91 (96)
T cd04768 58 FSLAEIKELLDTEM-EELTAMLLEKKQAIQQKIDR 91 (96)
T ss_pred CCHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHH
Confidence 35788889988654 48999999999999988765
No 79
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=20.38 E-value=1.8e+02 Score=22.09 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHh-----cchhHHHHHHHHHHHHhhhhhh
Q 028714 8 DLEELRQLRSIA-----KRPRIVSLINSEIHTLEKLSKE 41 (205)
Q Consensus 8 Dl~El~~Ll~~a-----~R~~v~~~L~~ei~~le~~~~~ 41 (205)
-|+|++.++... +.+.+..+|...+..|+.+|..
T Consensus 59 sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 97 (126)
T cd04785 59 SLEEIRALLALSDRPDRSCAEADAIARAHLADVRARIAD 97 (126)
T ss_pred CHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888753 3356788899988888877765
No 80
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.34 E-value=1.7e+02 Score=21.92 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhc------chhHHHHHHHHHHHHhhhhhh
Q 028714 8 DLEELRQLRSIAK------RPRIVSLINSEIHTLEKLSKE 41 (205)
Q Consensus 8 Dl~El~~Ll~~a~------R~~v~~~L~~ei~~le~~~~~ 41 (205)
-|+|++.++.... .+.++.+|...+..++.++..
T Consensus 58 sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~ 97 (116)
T cd04769 58 TLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITE 97 (116)
T ss_pred CHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888887643 357888999999999987765
No 81
>PRK09458 pspB phage shock protein B; Provisional
Probab=20.15 E-value=1.7e+02 Score=21.06 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhhhhh
Q 028714 6 VLDLEELRQLRSIAKRPRIVSLINSEIHTLEKLSKE 41 (205)
Q Consensus 6 ~~Dl~El~~Ll~~a~R~~v~~~L~~ei~~le~~~~~ 41 (205)
+.|.+.|..|.+.|.| +..+|..||.-+..
T Consensus 38 ~~d~~~L~~L~~~A~r------m~~RI~tLE~ILDa 67 (75)
T PRK09458 38 QEEQQRLAQLTEKAER------MRERIQALEAILDA 67 (75)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHcc
Confidence 4588888999988876 56788888876654
Done!