Your job contains 1 sequence.
>028717
MMENVNDQEMAVTKGSSDGEPYLGMEFESEEAAKVFYDAYATHMGFIMRVDAFRRSMRDG
KVVWRRLVCNKEGFRKLRPRRSENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNH
PLVAIPANGRRSVLLSQTPDEKDVKIRELTAELQRERKRSAAYQEQLEMVLRDMENHSHH
LSRNIDDIVQSVKQIEAKRIAASHC
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 028717
(205 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2079651 - symbol:AT3G07500 "AT3G07500" species... 708 7.0e-70 1
TAIR|locus:2097543 - symbol:AT3G59470 species:3702 "Arabi... 462 8.1e-44 1
TAIR|locus:2041041 - symbol:AT2G43280 species:3702 "Arabi... 449 1.9e-42 1
TAIR|locus:2135738 - symbol:AT4G12850 "AT4G12850" species... 364 2.0e-33 1
TAIR|locus:2121060 - symbol:FRS5 "FAR1-related sequence 5... 321 7.5e-28 1
TAIR|locus:2082420 - symbol:FRS7 "FAR1-related sequence 7... 218 8.2e-17 1
TAIR|locus:2144930 - symbol:FRS12 "FAR1-related sequence ... 218 8.6e-17 1
TAIR|locus:2062606 - symbol:FRS2 "FAR1-related sequence 2... 203 3.6e-15 1
TAIR|locus:2129665 - symbol:FAR1 "FAR-RED IMPAIRED RESPON... 196 2.1e-14 1
TAIR|locus:2014639 - symbol:FRS4 "FAR1-related sequence 4... 178 1.5e-12 1
TAIR|locus:2059304 - symbol:FRS3 "FAR1-related sequence 3... 176 3.0e-12 1
TAIR|locus:2090394 - symbol:FHY3 "far-red elongated hypoc... 171 1.0e-11 1
TAIR|locus:2035144 - symbol:FRS6 "FAR1-related sequence 6... 156 3.2e-10 1
TAIR|locus:2016259 - symbol:FRS8 "FAR1-related sequence 8... 148 9.6e-09 1
TAIR|locus:2182778 - symbol:FRS10 "FAR1-related sequence ... 130 5.3e-06 1
TAIR|locus:2012828 - symbol:FRS11 "FAR1-related sequence ... 128 9.5e-06 1
>TAIR|locus:2079651 [details] [associations]
symbol:AT3G07500 "AT3G07500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009639 "response to red or far red
light" evidence=ISS] INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002686
GenomeReviews:BA000014_GR HOGENOM:HOG000090425 EMBL:BT004031
EMBL:BT005083 IPI:IPI00525865 RefSeq:NP_187406.2 UniGene:At.48631
UniGene:At.71201 IntAct:Q84JA7 PRIDE:Q84JA7
EnsemblPlants:AT3G07500.1 GeneID:819938 KEGG:ath:AT3G07500
TAIR:At3g07500 eggNOG:NOG320386 InParanoid:Q84JA7 OMA:ERRRCTA
PhylomeDB:Q84JA7 ProtClustDB:CLSN2690766 Genevestigator:Q84JA7
Uniprot:Q84JA7
Length = 217
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 133/197 (67%), Positives = 163/197 (82%)
Query: 1 MMENVNDQEMAVTKGSSDGEPYLGMEFESEEAAKVFYDAYATHMGFIMRVDAFRRSMRDG 60
MMEN + + + S EP++GMEFESEEAAK FYD YAT MGF+MRVDAFRRSMRDG
Sbjct: 13 MMENSDVMKTVTDEASPMVEPFIGMEFESEEAAKSFYDNYATCMGFVMRVDAFRRSMRDG 72
Query: 61 KVVWRRLVCNKEGFRKLRPRRSENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNH 120
VVWRRLVCNKEGFR+ RPRRSE+RKPRA+TREGCKA+IVVK+EK+G W+VT+F KEHNH
Sbjct: 73 TVVWRRLVCNKEGFRRSRPRRSESRKPRAITREGCKALIVVKREKSGTWLVTKFEKEHNH 132
Query: 121 PLVAIPANGRRSVLLSQTPDEKDVKIRELTAELQRERKRSAAYQEQLEMVLRDMENHSHH 180
PL+ + N RR+ L QTPDEKD KIREL+AEL RER+R A Q+QL+MVL++ME HS+H
Sbjct: 133 PLLPLSPNVRRNFQLPQTPDEKDAKIRELSAELSRERRRCTALQQQLDMVLKEMEEHSNH 192
Query: 181 LSRNIDDIVQSVKQIEA 197
L+ NI+ ++QSV+ IE+
Sbjct: 193 LTININSVIQSVRDIES 209
>TAIR|locus:2097543 [details] [associations]
symbol:AT3G59470 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0009639 "response to red or
far red light" evidence=ISS] INTERPRO:IPR004330 Pfam:PF03101
EMBL:CP002686 EMBL:AY058089 EMBL:AY143081 IPI:IPI00519802
RefSeq:NP_001190136.1 RefSeq:NP_567085.1 UniGene:At.26657
IntAct:Q93Z68 PaxDb:Q93Z68 PRIDE:Q93Z68 EnsemblPlants:AT3G59470.1
EnsemblPlants:AT3G59470.2 GeneID:825116 KEGG:ath:AT3G59470
TAIR:At3g59470 eggNOG:NOG330011 InParanoid:Q93Z68 OMA:VENHNEM
PhylomeDB:Q93Z68 ProtClustDB:CLSN2689239 Genevestigator:Q93Z68
Uniprot:Q93Z68
Length = 251
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 93/193 (48%), Positives = 129/193 (66%)
Query: 12 VTKGSSDGEPYLGMEFESEEAAKVFYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNK 71
+T+ D EPY+G EFESE AA FY+AYAT +GF++RV RS DG + R+LVCNK
Sbjct: 62 MTEAQGD-EPYVGQEFESEAAAHGFYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNK 120
Query: 72 EGFRKLRPRRSENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPLVAIPANGRR 131
EG+R L +R + + RA TR GCKAMI+++KE +GKWV+T+FVKEHNH L+ P RR
Sbjct: 121 EGYR-LPSKRDKVIRQRAETRVGCKAMILIRKENSGKWVITKFVKEHNHSLM--PGRVRR 177
Query: 132 SVLLSQTPDEKDVKIRELTAELQRERKRSAAYQEQLEMVLRDMENHSHHLSRNIDDIVQS 191
+ Q P+E D KI+EL +L E+KR+A Y+ LEM+ +E H+ LS+ I IV +
Sbjct: 178 GCIYDQYPNEHD-KIQELMQQLAAEKKRAATYKRHLEMLFEQIEQHNESLSKRIQHIVDN 236
Query: 192 VKQIEAKRIAASH 204
V+ +E + +H
Sbjct: 237 VRNLEQRDHQQNH 249
>TAIR|locus:2041041 [details] [associations]
symbol:AT2G43280 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0009639 "response to red or
far red light" evidence=ISS] [GO:0006301 "postreplication repair"
evidence=RCA] INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002685
EMBL:BT002891 EMBL:BT004409 IPI:IPI00532233 RefSeq:NP_181857.2
UniGene:At.36909 EnsemblPlants:AT2G43280.1 GeneID:818930
KEGG:ath:AT2G43280 TAIR:At2g43280 HOGENOM:HOG000090425
InParanoid:Q84J94 OMA:PREARHT PhylomeDB:Q84J94
ProtClustDB:CLSN2680222 Genevestigator:Q84J94 Uniprot:Q84J94
Length = 206
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 90/198 (45%), Positives = 136/198 (68%)
Query: 5 VNDQEMAVTKGSSDG-----EPYLGMEFESEEAAKVFYDAYATHMGFIMRVDAFRRSMRD 59
+ D++ TK S++ EP G+ FESE+AAK+FYD Y+ +GF+MRV + RRS +D
Sbjct: 1 MEDEDDPTTKNSNNTDDFAIEPREGIIFESEDAAKMFYDDYSRRLGFVMRVMSCRRSEKD 60
Query: 60 GKVVWRRLVCNKEGFR-KLRPRRSENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEH 118
G+++ RR CNKEG +R + RKPR TREGCKAMI VK +++GKWV+T+FVKEH
Sbjct: 61 GRILARRFGCNKEGHCVSIRGKFGSVRKPRPSTREGCKAMIHVKYDRSGKWVITKFVKEH 120
Query: 119 NHPLVAIPANGRRSVLLSQTPDEKDVKIRELTAELQRERKRSAAYQEQLEMVLRDMENHS 178
NHPLV P R ++ DEKD +I+ELT EL+ +++ AAY+EQL+ + +E HS
Sbjct: 121 NHPLVVSPREARHTL------DEKDKRIQELTIELRNKKRLCAAYKEQLDAFAKIVEEHS 174
Query: 179 HHLSRNIDDIVQSVKQIE 196
+ +++ ++++V ++K+ E
Sbjct: 175 NQIAKKVENVVNNLKEFE 192
>TAIR|locus:2135738 [details] [associations]
symbol:AT4G12850 "AT4G12850" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009639 "response to red or far red
light" evidence=ISS] INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002687
EMBL:AL049640 EMBL:AL161535 HOGENOM:HOG000090425 IPI:IPI00545761
PIR:T06643 RefSeq:NP_193021.1 UniGene:At.33440 DNASU:826897
EnsemblPlants:AT4G12850.1 GeneID:826897 KEGG:ath:AT4G12850
TAIR:At4g12850 InParanoid:Q9SU01 OMA:EEIECQD PhylomeDB:Q9SU01
ProtClustDB:CLSN2916026 ArrayExpress:Q9SU01 Genevestigator:Q9SU01
Uniprot:Q9SU01
Length = 183
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 76/179 (42%), Positives = 117/179 (65%)
Query: 20 EPYLGMEFESEEAAKVFYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRP 79
EPY+G++FESEE AK FY Y+ +GF++R+ RRS DG+ + RRL CNK+GF P
Sbjct: 9 EPYVGLKFESEEEAKDFYVEYSKRLGFVVRMMQRRRSGIDGRTLARRLGCNKQGFG---P 65
Query: 80 RRSENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPLVAIPANGRRSVLLSQTP 139
+ + +REGCKA I+VK EK+GKWVVTRF+KEHNH L I ++ S
Sbjct: 66 NNQRSSSSSSSSREGCKATILVKMEKSGKWVVTRFIKEHNHSLQFIGSSSYDSFA----- 120
Query: 140 DEKDVKIRELTAELQRERKRSAAYQEQLEMVLRDMENHSHHLSRNIDDIVQSVKQIEAK 198
+K+ KI+ELT E++ + + Y+++L + ++E+++ LS + DIV++VK++E +
Sbjct: 121 -DKERKIKELTEEIECQDRLCDVYRDRLVSFIDNVEHYTEELSLKVRDIVENVKKLECQ 178
>TAIR|locus:2121060 [details] [associations]
symbol:FRS5 "FAR1-related sequence 5" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0008270 EMBL:AL035538
EMBL:AL161593 InterPro:IPR018289 Pfam:PF10551 HOGENOM:HOG000241939
EMBL:AY136457 IPI:IPI00529649 PIR:T05645 RefSeq:NP_195531.1
UniGene:At.31195 UniGene:At.48951 PRIDE:Q9SZL8
EnsemblPlants:AT4G38180.1 GeneID:829974 KEGG:ath:AT4G38180
TAIR:At4g38180 eggNOG:NOG236180 InParanoid:Q9SZL8 OMA:RNNRQKS
PhylomeDB:Q9SZL8 ProtClustDB:CLSN2685396 Genevestigator:Q9SZL8
Uniprot:Q9SZL8
Length = 788
Score = 321 (118.1 bits), Expect = 7.5e-28, P = 7.5e-28
Identities = 60/109 (55%), Positives = 81/109 (74%)
Query: 18 DGEPYLGMEFESEEAAKVFYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKL 77
D EPY G+EFESEEAAK FY++YA +GF RV + RRS RDG ++ R+ VC KEGFR +
Sbjct: 70 DLEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNM 129
Query: 78 RPRRSENR---KPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPLV 123
+R+++R +PR +TR GCKA + VK + +GKW+V+ FVK+HNH LV
Sbjct: 130 NEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELV 178
>TAIR|locus:2082420 [details] [associations]
symbol:FRS7 "FAR1-related sequence 7" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0008270 EMBL:AC018907
InterPro:IPR018289 Pfam:PF10551 eggNOG:NOG292373
HOGENOM:HOG000112649 ProtClustDB:CLSN2686747 EMBL:AF360270
EMBL:AY150446 IPI:IPI00534625 RefSeq:NP_566278.1 UniGene:At.19021
UniGene:At.74222 PRIDE:Q9M8J3 EnsemblPlants:AT3G06250.1
GeneID:819799 KEGG:ath:AT3G06250 TAIR:At3g06250 InParanoid:Q9M8J3
OMA:RCGNEIE PhylomeDB:Q9M8J3 Genevestigator:Q9M8J3 Uniprot:Q9M8J3
Length = 764
Score = 218 (81.8 bits), Expect = 8.2e-17, P = 8.2e-17
Identities = 49/113 (43%), Positives = 67/113 (59%)
Query: 10 MAVTKGSSDGEPYLGMEFESEEAAKVFYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVC 69
+A +G S EPY+G+EF++ E A+ +Y++YAT GF +R RS DG V RR VC
Sbjct: 17 IAENEGDSGLEPYVGLEFDTAEEARDYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVC 76
Query: 70 NKEGFRKLRPRRSENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPL 122
+KEGF+ N +R GC A I V++ TGKWV+ + KEHNH L
Sbjct: 77 SKEGFQL-------N------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNHDL 116
Score = 194 (73.4 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 50/145 (34%), Positives = 75/145 (51%)
Query: 20 EPYLGMEFESEEAAKVFYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRP 79
EPY G+EF S A FY AYA +GF +R+ RS DG + RR VC+KEGF+ P
Sbjct: 189 EPYAGLEFNSANEACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQ--HP 246
Query: 80 RRSENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPLVAIPAN-GRRSVLLSQT 138
+R GC A + +K++ +G W+V R K+HNH L N G + + T
Sbjct: 247 -----------SRMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLEPGKKNAGMKKITDDVT 295
Query: 139 P--DEKD-VKIRELTAELQRERKRS 160
D D +++ +L+ + R+ +
Sbjct: 296 GGLDSVDLIELNDLSNHISSTRENT 320
>TAIR|locus:2144930 [details] [associations]
symbol:FRS12 "FAR1-related sequence 12" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270 EMBL:AC068655
InterPro:IPR018289 Pfam:PF10551 IPI:IPI00546450 RefSeq:NP_197397.1
UniGene:At.22319 UniGene:At.72702 PaxDb:Q3E7I5 PRIDE:Q3E7I5
EnsemblPlants:AT5G18960.1 GeneID:832014 KEGG:ath:AT5G18960
TAIR:At5g18960 eggNOG:NOG292373 HOGENOM:HOG000112649
InParanoid:Q3E7I5 OMA:GSANEAC PhylomeDB:Q3E7I5
ProtClustDB:CLSN2686747 Genevestigator:Q3E7I5 Uniprot:Q3E7I5
Length = 788
Score = 218 (81.8 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 49/109 (44%), Positives = 64/109 (58%)
Query: 14 KGSSDGEPYLGMEFESEEAAKVFYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEG 73
+G S EPY+G+EF++ E A+ FY+AYA GF +R RS DG V RR VC+KEG
Sbjct: 36 EGGSGVEPYVGLEFDTAEEAREFYNAYAARTGFKVRTGQLYRSRTDGTVSSRRFVCSKEG 95
Query: 74 FRKLRPRRSENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPL 122
F+ N +R GC A I V++ TGKWV+ + KEHNH L
Sbjct: 96 FQL-------N------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 131
Score = 188 (71.2 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 43/109 (39%), Positives = 60/109 (55%)
Query: 14 KGSSDGEPYLGMEFESEEAAKVFYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEG 73
K + EPY G+EF S A FY AYA +GF +R+ RS DG + RR VC++EG
Sbjct: 204 KAVTGTEPYAGLEFGSANEACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSREG 263
Query: 74 FRKLRPRRSENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPL 122
F+ P +R GC A + +K++ +G W+V R K+HNH L
Sbjct: 264 FQ--HP-----------SRMGCGAYMRIKRQDSGGWIVDRLNKDHNHDL 299
>TAIR|locus:2062606 [details] [associations]
symbol:FRS2 "FAR1-related sequence 2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270 EMBL:AC005700
HOGENOM:HOG000090708 InterPro:IPR018289 Pfam:PF10551 EMBL:AK228730
EMBL:AK221503 IPI:IPI00520357 IPI:IPI00530517 PIR:G84730
RefSeq:NP_001077991.1 RefSeq:NP_001118431.1 RefSeq:NP_180784.2
RefSeq:NP_973580.1 UniGene:At.13189 UniGene:At.67147
EnsemblPlants:AT2G32250.1 EnsemblPlants:AT2G32250.3 GeneID:817785
KEGG:ath:AT2G32250 TAIR:At2g32250 eggNOG:NOG304016
InParanoid:Q3EBQ3 OMA:CKHAILV PhylomeDB:Q3EBQ3
ProtClustDB:CLSN2681190 Genevestigator:Q3EBQ3 Uniprot:Q3EBQ3
Length = 807
Score = 203 (76.5 bits), Expect = 3.6e-15, P = 3.6e-15
Identities = 40/99 (40%), Positives = 63/99 (63%)
Query: 24 GMEFESEEAAKVFYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRRSE 83
GM+FES+EAA FY YA +GF + + A RRS R GK + ++ C++ G ++ ++
Sbjct: 41 GMDFESKEAAYYFYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTKR---EKAT 97
Query: 84 NRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPL 122
PR+ + GCKA + +K+++ KWV+ FVKEHNH +
Sbjct: 98 AINPRSCPKTGCKAGLHMKRKEDEKWVIYNFVKEHNHEI 136
>TAIR|locus:2129665 [details] [associations]
symbol:FAR1 "FAR-RED IMPAIRED RESPONSE 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=IMP] [GO:0010017 "red or far-red
light signaling pathway" evidence=IMP] [GO:0010018 "far-red light
signaling pathway" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0010218 "response
to far red light" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA;IDA] [GO:0042753
"positive regulation of circadian rhythm" evidence=IMP] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=RCA] [GO:0006396 "RNA
processing" evidence=RCA] [GO:0009410 "response to xenobiotic
stimulus" evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0010212
"response to ionizing radiation" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0016571 "histone methylation" evidence=RCA]
[GO:0016579 "protein deubiquitination" evidence=RCA] [GO:0048522
"positive regulation of cellular process" evidence=RCA]
InterPro:IPR006564 InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966
SMART:SM00575 INTERPRO:IPR004330 Pfam:PF03101 GO:GO:0005634
GO:GO:0045893 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003700 EMBL:AL161540 EMBL:Z97337 GO:GO:0010018
GO:GO:0042753 PIR:F71414 PIR:T02124 EMBL:AF159587 IPI:IPI00546816
RefSeq:NP_567455.4 UniGene:At.11570 IntAct:Q9SWG3 STRING:Q9SWG3
PaxDb:Q9SWG3 PRIDE:Q9SWG3 EnsemblPlants:AT4G15090.1 GeneID:827173
KEGG:ath:AT4G15090 TAIR:At4g15090 eggNOG:NOG306101
HOGENOM:HOG000090708 InParanoid:Q9SWG3 OMA:LNLMEPP PhylomeDB:Q9SWG3
ProtClustDB:CLSN2716659 Genevestigator:Q9SWG3 InterPro:IPR018289
Pfam:PF10551 Uniprot:Q9SWG3
Length = 827
Score = 196 (74.1 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 50/168 (29%), Positives = 85/168 (50%)
Query: 15 GSSDGEPYLGMEFESEEAAKVFYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGF 74
G D EP G++F++ EAA +FY YA MGF + RRS + + + C++ G
Sbjct: 45 GDLDLEPRNGIDFDTHEAAYIFYQEYAKSMGFTTSIKNSRRSKKTKDFIDAKFACSRYGV 104
Query: 75 RKLRPRRSENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPLV-AIPANGR--R 131
+ + V + CKA + VK+ GKW++ FVK+HNH L+ A+ + R R
Sbjct: 105 TPESESSGSSSRRSTVKKTDCKASMHVKRRPDGKWIIHEFVKDHNHELLPALAYHFRIQR 164
Query: 132 SVLLSQTPDEKDV--KIRELTAELQRERKR-SAAYQEQLEMVLRDMEN 176
+V L++ + D+ + E T ++ E R S Y+ ++ D+ +
Sbjct: 165 NVKLAEK-NNIDILHAVSERTKKMYVEMSRQSGGYKNIGSLLQTDVSS 211
>TAIR|locus:2014639 [details] [associations]
symbol:FRS4 "FAR1-related sequence 4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
EMBL:AC009978 EMBL:AC012394 HOGENOM:HOG000090708 InterPro:IPR018289
Pfam:PF10551 EMBL:BT010456 EMBL:AK221406 IPI:IPI00535818
IPI:IPI00657192 PIR:G96790 RefSeq:NP_001031286.1 RefSeq:NP_177759.1
UniGene:At.34672 PaxDb:Q6NQJ7 PRIDE:Q6NQJ7 GeneID:843965
KEGG:ath:AT1G76320 TAIR:At1g76320 eggNOG:NOG261993
InParanoid:Q9SGQ3 OMA:KIGCKAS ProtClustDB:CLSN2682748
Genevestigator:Q6NQJ7 Uniprot:Q6NQJ7
Length = 732
Score = 178 (67.7 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 51/161 (31%), Positives = 78/161 (48%)
Query: 25 MEFESEEAAKVFYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRRSEN 84
MEFE+ E A +FY YA +GF + RRS + + + C + G ++ + +
Sbjct: 1 MEFETHEDAYLFYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQ---QSDDA 57
Query: 85 RKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPLVAIPANGRRSVLLSQTPDEKDV 144
PRA + GCKA + VK+ GKW V FVKEHNH L+ A+ RS ++ D
Sbjct: 58 INPRASPKIGCKASMHVKRRPDGKWYVYSFVKEHNHDLLPEQAHYFRSHRNTELVKSNDS 117
Query: 145 KIRELTAELQRERKRSAAYQEQLEMVLRDMENHSHHLSRNI 185
++R + K +AY + L+ + M N H R +
Sbjct: 118 RLRRKKNTPLTDCKHLSAYHD-LDFIDGYMRNQ-HDKGRRL 156
>TAIR|locus:2059304 [details] [associations]
symbol:FRS3 "FAR1-related sequence 3" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR006564 InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966
SMART:SM00575 INTERPRO:IPR004330 Pfam:PF03101 GO:GO:0009506
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872
GO:GO:0008270 EMBL:AC005623 InterPro:IPR018289 Pfam:PF10551
EMBL:AY057491 EMBL:BT002690 IPI:IPI00526037 IPI:IPI00657216
PIR:H84668 RefSeq:NP_001031428.1 RefSeq:NP_565636.1
RefSeq:NP_850098.1 UniGene:At.22269 IntAct:Q9ZVC9 PaxDb:Q9ZVC9
PRIDE:Q9ZVC9 EnsemblPlants:AT2G27110.1 EnsemblPlants:AT2G27110.2
GeneID:817253 KEGG:ath:AT2G27110 TAIR:At2g27110 eggNOG:NOG302035
HOGENOM:HOG000241939 InParanoid:Q9ZVC9 OMA:LWPRQDE PhylomeDB:Q9ZVC9
ProtClustDB:CLSN2688464 Genevestigator:Q9ZVC9 Uniprot:Q9ZVC9
Length = 851
Score = 176 (67.0 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 45/122 (36%), Positives = 63/122 (51%)
Query: 3 ENVNDQEMAVTKGSSDGEPYLGMEFESEEAAKVFYDAYATHMGFIMRVDAFRRSMRDGKV 62
+N D + V EP +GMEF SE+ AK FYD Y+ +GF ++ R+ DG V
Sbjct: 31 QNNMDNSLGVQDEIGIAEPCVGMEFNSEKEAKSFYDEYSRQLGFTSKL--LPRT--DGSV 86
Query: 63 VWRRLVCNKEGFRKLRPRRSENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPL 122
R VC+ +RS+ R E C AM+ ++ + KWVVT+FVKEH H L
Sbjct: 87 SVREFVCSSSS------KRSKRR-----LSESCDAMVRIELQGHEKWVVTKFVKEHTHGL 135
Query: 123 VA 124
+
Sbjct: 136 AS 137
>TAIR|locus:2090394 [details] [associations]
symbol:FHY3 "far-red elongated hypocotyls 3" species:3702
"Arabidopsis thaliana" [GO:0004553 "hydrolase activity, hydrolyzing
O-glycosyl compounds" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0005975 "carbohydrate metabolic process"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009585 "red, far-red light phototransduction" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IMP] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010017 "red or far-red light signaling pathway"
evidence=IMP] [GO:0010218 "response to far red light" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0042753 "positive regulation of circadian rhythm"
evidence=IMP] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0009630 "gravitropism"
evidence=RCA] [GO:0009639 "response to red or far red light"
evidence=RCA] InterPro:IPR001000 InterPro:IPR006564
InterPro:IPR007527 PROSITE:PS50966 SMART:SM00575 INTERPRO:IPR004330
Pfam:PF03101 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0045893 GO:GO:0046872 GO:GO:0005975 GO:GO:0007623
GO:GO:0004553 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0010218 GO:GO:0009585 GO:GO:0042753 HOGENOM:HOG000090708
InterPro:IPR018289 Pfam:PF10551 EMBL:AP001306 IPI:IPI00519965
RefSeq:NP_001118673.1 RefSeq:NP_188856.2 UniGene:At.27725
STRING:Q9LIE5 PaxDb:Q9LIE5 PRIDE:Q9LIE5 EnsemblPlants:AT3G22170.1
EnsemblPlants:AT3G22170.2 GeneID:821781 KEGG:ath:AT3G22170
TAIR:At3g22170 eggNOG:NOG45392 InParanoid:Q9LIE5 OMA:ITHAERV
PhylomeDB:Q9LIE5 ProtClustDB:PLN03097 Genevestigator:Q9LIE5
Uniprot:Q9LIE5
Length = 839
Score = 171 (65.3 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 53/183 (28%), Positives = 84/183 (45%)
Query: 20 EPYLGMEFESEEAAKVFYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKL-- 77
EP GMEFES A FY Y+ MGF + RRS + + + C++ G ++
Sbjct: 69 EPLNGMEFESHGEAYSFYQEYSRAMGFNTAIQNSRRSKTTREFIDAKFACSRYGTKREYD 128
Query: 78 ----RPR-RSENRKP------RAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPLV--- 123
RPR R + P R + CKA + VK+ GKWV+ FV+EHNH L+
Sbjct: 129 KSFNRPRARQSKQDPENMAGRRTCAKTDCKASMHVKRRPDGKWVIHSFVREHNHELLPAQ 188
Query: 124 AIPANGRR--SVLLSQTPDEKDVKIRELTAELQRERKRSAAYQEQLEMVLRDMENHSHHL 181
A+ R+ + + Q + K V + ++ E+ R+ + + +L D + L
Sbjct: 189 AVSEQTRKIYAAMAKQFAEYKTVISLKSDSKSSFEKGRTLSVETGDFKILLDFLSRMQSL 248
Query: 182 SRN 184
+ N
Sbjct: 249 NSN 251
>TAIR|locus:2035144 [details] [associations]
symbol:FRS6 "FAR1-related sequence 6" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
EMBL:AC008016 InterPro:IPR018289 Pfam:PF10551 EMBL:AY080775
EMBL:AY133776 IPI:IPI00532825 PIR:G96565 RefSeq:NP_175661.1
UniGene:At.37583 PRIDE:Q9SSQ4 EnsemblPlants:AT1G52520.1
GeneID:841683 KEGG:ath:AT1G52520 TAIR:At1g52520 eggNOG:NOG287780
HOGENOM:HOG000112651 InParanoid:Q9SSQ4 OMA:LELMCCK PhylomeDB:Q9SSQ4
ProtClustDB:CLSN2679731 Genevestigator:Q9SSQ4 Uniprot:Q9SSQ4
Length = 703
Score = 156 (60.0 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 44/133 (33%), Positives = 70/133 (52%)
Query: 21 PYLGMEFESEEAAKVFYDAYATHMGFIMRVDA--FRRSMRD--GKVVWRRLVCNKEGFRK 76
P +GMEFES + A +Y+ YA+ +GF +RV F+R ++ G V L C+ +GF++
Sbjct: 85 PAVGMEFESYDDAYNYYNCYASEVGFRVRVKNSWFKRRSKEKYGAV----LCCSSQGFKR 140
Query: 77 LRPRRSENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPL---VAIPANGRRSV 133
+ NR R TR GC AMI +++ + +W V +HNH L + +R
Sbjct: 141 IN---DVNRV-RKETRTGCPAMIRMRQVDSKRWRVVEVTLDHNHLLGCKLYKSVKRKRKC 196
Query: 134 LLSQTPDEKDVKI 146
+ S D K +K+
Sbjct: 197 VSSPVSDAKTIKL 209
>TAIR|locus:2016259 [details] [associations]
symbol:FRS8 "FAR1-related sequence 8" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0050665
"hydrogen peroxide biosynthetic process" evidence=RCA]
InterPro:IPR006564 InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966
SMART:SM00575 INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
EMBL:AC009322 EMBL:AC011717 InterPro:IPR018289 Pfam:PF10551
HOGENOM:HOG000112651 IPI:IPI00534750 PIR:E96831 RefSeq:NP_178118.2
UniGene:At.52575 PRIDE:Q9S793 EnsemblPlants:AT1G80010.1
GeneID:844341 KEGG:ath:AT1G80010 TAIR:At1g80010 eggNOG:NOG311954
InParanoid:Q9S793 OMA:FAIRVKS Genevestigator:Q9S793 Uniprot:Q9S793
Length = 725
Score = 148 (57.2 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 35/100 (35%), Positives = 53/100 (53%)
Query: 21 PYLGMEFESEEAAKVFYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPR 80
P GMEFES + A FY++YA +GF +RV + + L CN +GF+ L+
Sbjct: 95 PTPGMEFESYDDAYSFYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCQGFKLLKDA 154
Query: 81 RSENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNH 120
S ++ TR GC+AMI ++ +W V + +HNH
Sbjct: 155 HSRRKE----TRTGCQAMIRLRLIHFDRWKVDQVKLDHNH 190
>TAIR|locus:2182778 [details] [associations]
symbol:FRS10 "FAR1-related sequence 10" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270 EMBL:AF262043
InterPro:IPR018289 Pfam:PF10551 IPI:IPI00525509 RefSeq:NP_198205.2
UniGene:At.55070 PaxDb:Q9LKR4 EnsemblPlants:AT5G28530.1
GeneID:832948 KEGG:ath:AT5G28530 TAIR:At5g28530 eggNOG:NOG320567
HOGENOM:HOG000006468 OMA:DECAQAF PhylomeDB:Q9LKR4
ProtClustDB:CLSN2687754 Genevestigator:Q9LKR4 Uniprot:Q9LKR4
Length = 685
Score = 130 (50.8 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 34/108 (31%), Positives = 53/108 (49%)
Query: 21 PYLGMEFESEEAAKVFYDAYATHMGFIMRVDAFRRSMRDGKVVWRR-LVCNKEGFRKLRP 79
PY+G F +++ A +Y +A GF +R S G V+RR VC + GF + R
Sbjct: 55 PYVGQIFTTDDEAFEYYSTFARKSGFSIRKARSTESQNLG--VYRRDFVCYRSGFNQPRK 112
Query: 80 RRS-ENRKPRAVTREGCKAMIVVKKEKT---GKWVVTRFVKEHNHPLV 123
+ + E+ + R R GC + + KE W V++F HNH L+
Sbjct: 113 KANVEHPRERKSVRCGCDGKLYLTKEVVDGVSHWYVSQFSNVHNHELL 160
>TAIR|locus:2012828 [details] [associations]
symbol:FRS11 "FAR1-related sequence 11" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009639 "response
to red or far red light" evidence=ISS] InterPro:IPR006564
InterPro:IPR007527 Pfam:PF04434 PROSITE:PS50966 SMART:SM00575
INTERPRO:IPR004330 Pfam:PF03101 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
EMBL:AC005489 InterPro:IPR018289 Pfam:PF10551 HOGENOM:HOG000006468
ProtClustDB:CLSN2687754 EMBL:AF424595 EMBL:BT000486 IPI:IPI00517858
RefSeq:NP_563865.1 UniGene:At.26302 IntAct:Q9SY66 PaxDb:Q9SY66
PRIDE:Q9SY66 EnsemblPlants:AT1G10240.1 GeneID:837563
KEGG:ath:AT1G10240 TAIR:At1g10240 eggNOG:NOG258635
InParanoid:Q9SY66 OMA:IRRHRTE PhylomeDB:Q9SY66
Genevestigator:Q9SY66 Uniprot:Q9SY66
Length = 680
Score = 128 (50.1 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 38/128 (29%), Positives = 65/128 (50%)
Query: 3 ENVNDQEMAVTKGSSDGEPYLGMEFESEEAAKVFYDAYATHMGFIMRVDAFRRSMRDG-- 60
E+ +D +++ + + PYLG F + + A FY +A GF +R R +DG
Sbjct: 31 ESPDDNNLSL-EAVHNAIPYLGQIFLTHDTAYEFYSTFAKRCGFSIR--RHRTEGKDGVG 87
Query: 61 KVVWRR-LVCNKEGFRKLRP-RRSENRKPRAVTREGCKAMIVVKK-EKTG--KWVVTRFV 115
K + RR VC++ G ++ + ++ R +R GC+A + + K + G +W VT F
Sbjct: 88 KGLTRRYFVCHRAGNTPIKTLSEGKPQRNRRSSRCGCQAYLRISKLTELGSTEWRVTGFA 147
Query: 116 KEHNHPLV 123
HNH L+
Sbjct: 148 NHHNHELL 155
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.131 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 205 205 0.00096 111 3 11 22 0.47 32
31 0.47 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 604 (64 KB)
Total size of DFA: 165 KB (2097 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.84u 0.15s 24.99t Elapsed: 00:00:01
Total cpu time: 24.84u 0.15s 24.99t Elapsed: 00:00:01
Start: Sat May 11 08:14:55 2013 End: Sat May 11 08:14:56 2013