BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028717
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 3 ENVNDQEMAVTKGSSDGEPYLGMEFESEEAAKVFYDAY 40
ENV MA KG + G + + F +E+ K FYD Y
Sbjct: 269 ENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDY 306
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 3 ENVNDQEMAVTKGSSDGEPYLGMEFESEEAAKVFYDAY 40
ENV MA KG + G + + F +E+ K FYD Y
Sbjct: 269 ENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDY 306
>pdb|1Q3K|A Chain A, Crystal Structure Of Creatinine Amidohydrolase
(Creatininase)
pdb|1Q3K|B Chain B, Crystal Structure Of Creatinine Amidohydrolase
(Creatininase)
pdb|1Q3K|C Chain C, Crystal Structure Of Creatinine Amidohydrolase
(Creatininase)
pdb|1Q3K|D Chain D, Crystal Structure Of Creatinine Amidohydrolase
(Creatininase)
pdb|1Q3K|E Chain E, Crystal Structure Of Creatinine Amidohydrolase
(Creatininase)
pdb|1Q3K|F Chain F, Crystal Structure Of Creatinine Amidohydrolase
(Creatininase)
Length = 259
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 142 KDVKIRELTAELQRERKRSAAYQEQLEMVLRDMENHSHHLSRNIDDIVQS-VKQIEAKRI 200
K V + ELT + R AA L + + +E H HH+ N+D ++ + V Q A+RI
Sbjct: 2 KSVFVGELT--WKEYEARVAAGDCVLMLPVGALEQHGHHMCMNVDVLLPTAVCQRVAERI 59
Query: 201 AA 202
A
Sbjct: 60 GA 61
>pdb|2Y0C|A Chain A, Bcec Mutation Y10s
pdb|2Y0C|B Chain B, Bcec Mutation Y10s
pdb|2Y0C|C Chain C, Bcec Mutation Y10s
pdb|2Y0C|D Chain D, Bcec Mutation Y10s
Length = 478
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 137 QTPDEKDVKIRELTAELQRERKRSAAY-----QEQLEMVLRDMENHSHHLSR--NIDDIV 189
T D ++ REL AEL R AAY +E ++ D+ +H L R +DD
Sbjct: 341 NTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEA 400
Query: 190 QSVKQIEAKRI 200
Q+ + +A I
Sbjct: 401 QAARDADALVI 411
>pdb|2Y0D|A Chain A, Bcec Mutation Y10k
pdb|2Y0D|B Chain B, Bcec Mutation Y10k
pdb|2Y0D|C Chain C, Bcec Mutation Y10k
pdb|2Y0D|D Chain D, Bcec Mutation Y10k
Length = 478
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 137 QTPDEKDVKIRELTAELQRERKRSAAY-----QEQLEMVLRDMENHSHHLSR--NIDDIV 189
T D ++ REL AEL R AAY +E ++ D+ +H L R +DD
Sbjct: 341 NTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEA 400
Query: 190 QSVKQIEAKRI 200
Q+ + +A I
Sbjct: 401 QAARDADALVI 411
>pdb|2Y0E|A Chain A, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|B Chain B, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|C Chain C, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|D Chain D, Bcec And The Final Step Of Ugds Reaction
Length = 478
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 137 QTPDEKDVKIRELTAELQRERKRSAAY-----QEQLEMVLRDMENHSHHLSR--NIDDIV 189
T D ++ REL AEL R AAY +E ++ D+ +H L R +DD
Sbjct: 341 NTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEA 400
Query: 190 QSVKQIEAKRI 200
Q+ + +A I
Sbjct: 401 QAARDADALVI 411
>pdb|1FY2|A Chain A, Aspartyl Dipeptidase
pdb|1FYE|A Chain A, Aspartyl Dipeptidase (Anisotropic B-Factor Refinement)
Length = 229
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 117 EHNHPLVAIPANGRRSVLL------SQTPDEKDVKIRELTAEL 153
EH PL+A NGRRS + +QT DE K E+ A L
Sbjct: 18 EHALPLIANQLNGRRSAVFIPFAGVTQTWDEYTDKTAEVLAPL 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,679,697
Number of Sequences: 62578
Number of extensions: 207831
Number of successful extensions: 883
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 875
Number of HSP's gapped (non-prelim): 23
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)