Query 028719
Match_columns 205
No_of_seqs 121 out of 240
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 15:55:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1688 Golgi proteins involve 100.0 5.6E-89 1.2E-93 572.2 15.0 176 20-195 9-187 (188)
2 PF03248 Rer1: Rer1 family; I 100.0 6.6E-87 1.4E-91 559.7 17.6 166 28-193 2-176 (176)
3 COG5249 RER1 Golgi protein inv 100.0 1E-75 2.3E-80 484.5 12.2 175 13-192 1-179 (180)
4 PF09973 DUF2208: Predicted me 85.4 1.7 3.7E-05 38.8 5.1 43 130-176 7-49 (233)
5 PF13260 DUF4051: Protein of u 78.0 2.9 6.3E-05 29.7 3.1 22 157-178 4-25 (54)
6 CHL00161 secY preprotein trans 59.0 12 0.00026 35.4 3.9 110 71-184 294-416 (417)
7 PF12273 RCR: Chitin synthesis 39.2 12 0.00027 29.5 0.5 13 53-65 1-13 (130)
8 PF06703 SPC25: Microsomal sig 37.9 60 0.0013 26.4 4.4 41 131-171 33-78 (162)
9 TIGR03097 PEP_O_lig_1 probable 32.0 82 0.0018 29.1 4.7 59 119-177 69-130 (402)
10 PF12273 RCR: Chitin synthesis 30.1 71 0.0015 25.2 3.5 18 152-169 4-21 (130)
11 PRK06531 yajC preprotein trans 28.4 42 0.0009 27.0 1.9 30 148-179 2-31 (113)
12 PRK15432 autoinducer 2 ABC tra 27.4 2.8E+02 0.006 25.7 7.4 55 127-181 262-321 (344)
13 PRK05886 yajC preprotein trans 26.6 58 0.0013 26.0 2.4 28 151-179 6-33 (109)
14 PRK14475 F0F1 ATP synthase sub 24.6 99 0.0021 25.3 3.5 13 142-155 3-15 (167)
15 PF14800 DUF4481: Domain of un 22.7 85 0.0018 29.5 3.1 43 92-137 15-69 (308)
16 TIGR02920 acc_sec_Y2 accessory 22.0 1.3E+02 0.0028 28.4 4.2 108 71-183 273-394 (395)
17 PRK12417 secY preprotein trans 21.9 48 0.001 31.5 1.4 108 71-183 280-401 (404)
18 COG1988 Predicted membrane-bou 21.2 5E+02 0.011 21.9 9.2 103 64-179 83-189 (190)
19 COG0817 RuvC Holliday junction 20.8 55 0.0012 28.0 1.3 42 137-178 84-125 (160)
No 1
>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-89 Score=572.18 Aligned_cols=176 Identities=61% Similarity=1.168 Sum_probs=171.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeccEEEeehhHHHHHHHHHHhhcCCCCCC
Q 028719 20 SSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDP 99 (205)
Q Consensus 20 ~~~~~~~~~~~~~~k~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~lRv~~~~g~YiVtY~LgIylLnlfi~FLtPk~Dp 99 (205)
++++.++++.++.++++++||+||||+|||+..||+++++++++|++||+..|||||||||||||+||+||+|||||+||
T Consensus 9 ~~~~~a~~v~~~~~~~~~~yQ~yLDr~tPh~~~RW~~tl~l~~iy~iRi~~~~G~YII~Y~LgIYlLNlfiaFLtPk~Dp 88 (188)
T KOG1688|consen 9 DSGGVASPVKRFFHELSQLYQHYLDRSTPHTAVRWVVTLVLLLIYCIRIYLVQGFYIITYALGIYLLNLFIAFLTPKVDP 88 (188)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC---CCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 028719 100 EY---SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMI 176 (205)
Q Consensus 100 ~l---~eg~~LP~~~~dEFRPFiRRLPEFkFW~~~trat~ia~~~Tff~~fDiPVFWPILl~YFi~Lf~lTm~rqI~HMi 176 (205)
|+ +||+.||++++||||||||||||||||+++|||+++|+.||||++||+|||||||++||++||++||||||+|||
T Consensus 89 ~~~~~~dg~~Lpt~~~dEFrPFIRRLPEFKFW~s~~ka~~ia~~~tfF~~fdVPVFwPILl~Y~i~lf~ltmrRqI~HMi 168 (188)
T KOG1688|consen 89 ELQDADDGPSLPTRKSDEFRPFIRRLPEFKFWYSSTKATLIALLCTFFSIFDVPVFWPILLMYFIVLFFLTMRRQIAHMI 168 (188)
T ss_pred hhhcccCCCCCCCCCccccchHHHcCchhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCccccCCCCC
Q 028719 177 KYRYVPFSLGKQRYDGKRP 195 (205)
Q Consensus 177 KyrYvPf~~gK~~y~~~~~ 195 (205)
||||+||++||++|+++++
T Consensus 169 KyrY~Pf~~gK~~~~~~~~ 187 (188)
T KOG1688|consen 169 KYRYIPFDIGKKKYGSHSD 187 (188)
T ss_pred hhcccccccCchhhhcccc
Confidence 9999999999999987754
No 2
>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=6.6e-87 Score=559.69 Aligned_cols=166 Identities=57% Similarity=1.145 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeccEEEeehhHHHHHHHHHHhhcCCCCCCCC------
Q 028719 28 ISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQIDPEY------ 101 (205)
Q Consensus 28 ~~~~~~k~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~lRv~~~~g~YiVtY~LgIylLnlfi~FLtPk~Dp~l------ 101 (205)
++++.++++++||+||||||||++.||+++++|+++|++||++.|||||||||||||+||+||+|||||+||++
T Consensus 2 ~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~~Rv~~~~g~YiVtY~LgIylLnlfi~FltP~~Dp~l~~~~~~ 81 (176)
T PF03248_consen 2 VSRFFQKLKRTYQSYLDKSTPYTKYRWIAFLVLLFLFLLRVYYLQGWYIVTYALGIYLLNLFIAFLTPKFDPELEQDEED 81 (176)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhcceeeehHHHHHHHHHHHHHHhCCcCcccccccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -CCCCCCCC--CCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028719 102 -SDGPTLPT--RGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKY 178 (205)
Q Consensus 102 -~eg~~LP~--~~~dEFRPFiRRLPEFkFW~~~trat~ia~~~Tff~~fDiPVFWPILl~YFi~Lf~lTm~rqI~HMiKy 178 (205)
|||+.||+ +++||||||+|||||||||++||||+++|++||||++||||||||||++|||+||++||||||+|||||
T Consensus 82 ~~~g~~Lp~~~~~~~EFrPFiRRlPEFkFW~~~tka~~i~~~~tff~~fdiPVFWPiLl~Yfi~lf~~tm~~qI~hMiKy 161 (176)
T PF03248_consen 82 EEEGPELPTTNENDDEFRPFIRRLPEFKFWYSCTKATVISLFCTFFPFFDIPVFWPILLVYFIVLFVLTMKRQIKHMIKY 161 (176)
T ss_pred ccccccCCCCcccccccCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35779999 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccccCCC
Q 028719 179 RYVPFSLGKQRYDGK 193 (205)
Q Consensus 179 rYvPf~~gK~~y~~~ 193 (205)
||+|||+||++|++|
T Consensus 162 ~Y~Pf~~gK~~y~~~ 176 (176)
T PF03248_consen 162 RYVPFDFGKKKYGRK 176 (176)
T ss_pred CCCCccccchhccCC
Confidence 999999999999986
No 3
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=100.00 E-value=1e-75 Score=484.50 Aligned_cols=175 Identities=42% Similarity=0.868 Sum_probs=161.9
Q ss_pred hhccCCCCCCCchhHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeccEEEeehhHHHHHHHHHHhh
Q 028719 13 EDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGF 92 (205)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~k~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~lRv~~~~g~YiVtY~LgIylLnlfi~F 92 (205)
||+|+++.. .+.+..+.++++||+||||.+||+..||..+++|+++||.||...+|||+|||+|||||||+|++|
T Consensus 1 md~~~~~~~-----n~~~k~n~~k~LyqhylDr~~P~~~~RW~i~ggL~~lf~iRI~~~~gwY~icY~LgiyLLn~flaF 75 (180)
T COG5249 1 MDYDSSDTM-----NLITKMNDLKTLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAF 75 (180)
T ss_pred CCchhHHHH-----HHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 456554422 356678899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC----CCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHH
Q 028719 93 LSPQIDPEY----SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTM 168 (205)
Q Consensus 93 LtPk~Dp~l----~eg~~LP~~~~dEFRPFiRRLPEFkFW~~~trat~ia~~~Tff~~fDiPVFWPILl~YFi~Lf~lTm 168 (205)
||||+||+. ||+....+++|+|||||||||||||||+++||||++|++.|+|.+||||||||||++|||+|+..||
T Consensus 76 LTPKfdms~eq~e~d~eieeg~kd~EFrPFIRrLPEFkFWy~s~rat~~aLi~s~F~IfDvPVfwPILvvYfi~l~f~t~ 155 (180)
T COG5249 76 LTPKFDMSFEQIEDDDEIEEGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIFLVFYTA 155 (180)
T ss_pred hCCCCcccHhhhccccccccccccchhhHHHHcCchhHHHHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHH
Confidence 999999998 3344555679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccCCCCccccCC
Q 028719 169 RRQIMHMIKYRYVPFSLGKQRYDG 192 (205)
Q Consensus 169 ~rqI~HMiKyrYvPf~~gK~~y~~ 192 (205)
|||||||+||||+||+.||++|++
T Consensus 156 rRqIqHM~KYrY~PfdigKkky~s 179 (180)
T COG5249 156 RRQIQHMKKYRYNPFDIGKKKYKS 179 (180)
T ss_pred HHHHHHHHHhcCCchhhhhhhhcc
Confidence 999999999999999999999975
No 4
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=85.44 E-value=1.7 Score=38.79 Aligned_cols=43 Identities=16% Similarity=0.504 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 028719 130 CVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMI 176 (205)
Q Consensus 130 ~~trat~ia~~~Tff~~fDiPVFWPILl~YFi~Lf~lTm~rqI~HMi 176 (205)
+..-.+++|+++++++.. ||++.++||++.++++|.-.++++-
T Consensus 7 sq~~il~fa~Vla~~p~y----~~~~filYfiv~~~i~~~~~~Rs~r 49 (233)
T PF09973_consen 7 SQVSILLFAAVLAFFPQY----YFEVFILYFIVFFGIMIVMGIRSYR 49 (233)
T ss_pred HHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 445567888999988543 6899999999999999999888876
No 5
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=77.95 E-value=2.9 Score=29.66 Aligned_cols=22 Identities=32% Similarity=0.810 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 028719 157 LFYWLMLFTLTMRRQIMHMIKY 178 (205)
Q Consensus 157 l~YFi~Lf~lTm~rqI~HMiKy 178 (205)
.-|||+|.++..-..+-||.+|
T Consensus 4 awywivli~lv~~gy~~hmkry 25 (54)
T PF13260_consen 4 AWYWIVLIVLVVVGYFCHMKRY 25 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999987
No 6
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=59.01 E-value=12 Score=35.44 Aligned_cols=110 Identities=15% Similarity=0.261 Sum_probs=58.7
Q ss_pred eccEEEeehhHHHHHHHHHHhhcCCCCCCCC------CCCCCCCCCCCC-CCCCcccC-CchhHHHHHHHHHHHHHHHHH
Q 028719 71 VQGFYIITYGLGIYLLNLLMGFLSPQIDPEY------SDGPTLPTRGSD-EFRPFVRR-LPEFKFWYCVTRSFCIGFVLT 142 (205)
Q Consensus 71 ~~g~YiVtY~LgIylLnlfi~FLtPk~Dp~l------~eg~~LP~~~~d-EFRPFiRR-LPEFkFW~~~trat~ia~~~T 142 (205)
.+.+|+++|.+-+.+++-|..+++ +||+. +.|...|+-++. +=.-+++| +|-..+|= +.-..++|.++.
T Consensus 294 ~~~~y~~~y~~lii~Fs~f~~~i~--~~p~~iA~~Lkk~g~~IpGvRpG~~T~~yL~~~i~~~t~~G-a~~l~~la~~p~ 370 (417)
T CHL00161 294 FKILYLVLYFVLILFFSYFYSTIV--LNPKDISENLQKMAVSIPGIRPGKATTKYLKKTLNRLTLLG-ALFLAFIALLPN 370 (417)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHh-HHHHHHHHHHHH
Confidence 355688999888888888888887 88876 346666654433 11122222 22223322 223333444455
Q ss_pred hhc-cCCCcchhH---HHHHHHHHHHHHHHHHHH-HHHhhhccccCC
Q 028719 143 FFS-AFDVPVFWP---ILLFYWLMLFTLTMRRQI-MHMIKYRYVPFS 184 (205)
Q Consensus 143 ff~-~fDiPVFWP---ILl~YFi~Lf~lTm~rqI-~HMiKyrYvPf~ 184 (205)
++. .++++++.- .=++ -++=..+...||| .|+.+.+|-+|.
T Consensus 371 l~~~~~~~~~~~~~ggtslL-I~Vgv~~~~~~qi~a~~~~~~Y~~~~ 416 (417)
T CHL00161 371 LIESVLNLSVFKGLGTTSLL-ILVGVAIDTSRQIQTYLISNNYENMY 416 (417)
T ss_pred HHHHhcCcccccccchhhhh-hhHHHHHHHHHHHHHHHHHHhhcccc
Confidence 553 345564442 1122 2222333334555 577888887763
No 7
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=39.20 E-value=12 Score=29.53 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHH
Q 028719 53 RWVVCLAVVSIYA 65 (205)
Q Consensus 53 RW~~~~~L~~lf~ 65 (205)
||+++++++++++
T Consensus 1 RW~l~~iii~~i~ 13 (130)
T PF12273_consen 1 RWVLFAIIIVAIL 13 (130)
T ss_pred CeeeHHHHHHHHH
Confidence 7888877776554
No 8
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=37.94 E-value=60 Score=26.38 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhhcc-----CCCcchhHHHHHHHHHHHHHHHHHH
Q 028719 131 VTRSFCIGFVLTFFSA-----FDVPVFWPILLFYWLMLFTLTMRRQ 171 (205)
Q Consensus 131 ~trat~ia~~~Tff~~-----fDiPVFWPILl~YFi~Lf~lTm~rq 171 (205)
+.-++++|.++.+++. -.-|+-+...+.||++..+++.-.-
T Consensus 33 g~~a~~iA~~a~~~d~~~~f~~s~~~~~~~v~~YfiLs~il~~~~~ 78 (162)
T PF06703_consen 33 GYLAVIIAGFAFFYDYKYPFPESKPYLIICVILYFILSGILTLYSY 78 (162)
T ss_pred HHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777755 5667888888899999988887443
No 9
>TIGR03097 PEP_O_lig_1 probable O-glycosylation ligase, exosortase system type 1-associated. These proteins are members of the O-antigen polymerase (wzy) family described by Pfam model pfam04932. This group is associated with genomes and ususally genomic contexts containing elements of the exosortase/PEP-CTERM protein export system, specificially the type 1 variety of this system described by the Genome Property, GenProp0652.
Probab=31.97 E-value=82 Score=29.08 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=39.7
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhccCCCc---chhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028719 119 VRRLPEFKFWYCVTRSFCIGFVLTFFSAFDVP---VFWPILLFYWLMLFTLTMRRQIMHMIK 177 (205)
Q Consensus 119 iRRLPEFkFW~~~trat~ia~~~Tff~~fDiP---VFWPILl~YFi~Lf~lTm~rqI~HMiK 177 (205)
++.-|+.+++.-..-.++++.+.+..+....+ .+|++++++++....++-|++++.+..
T Consensus 69 ~~~~~~~~~lllf~~~~~ls~l~s~~~~~s~~~~~~~~~~~l~~~~~~~l~~~~~~l~~l~~ 130 (402)
T TIGR03097 69 IPWTPEVIFLLLLTIWMTVTTFFAFDPDVAFVQWDKVMKIFLMVLVTLMLISDRQRLHWLLW 130 (402)
T ss_pred CCCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 45677877776555555555444333322233 668899999999888899999988765
No 10
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.09 E-value=71 Score=25.17 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 028719 152 FWPILLFYWLMLFTLTMR 169 (205)
Q Consensus 152 FWPILl~YFi~Lf~lTm~ 169 (205)
+|=|+++-++++++++++
T Consensus 4 l~~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYC 21 (130)
T ss_pred eHHHHHHHHHHHHHHHHH
Confidence 444555444444444443
No 11
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=28.41 E-value=42 Score=26.96 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=16.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028719 148 DVPVFWPILLFYWLMLFTLTMRRQIMHMIKYR 179 (205)
Q Consensus 148 DiPVFWPILl~YFi~Lf~lTm~rqI~HMiKyr 179 (205)
|++.++|+.+++-++. +..|.|-|-+.+|+
T Consensus 2 ~~~~il~~vv~~~i~y--f~iRPQkKr~Ke~~ 31 (113)
T PRK06531 2 GIPTIIMFVVMLGLIF--FMQRQQKKQAQERQ 31 (113)
T ss_pred chHHHHHHHHHHHHHH--heechHHHHHHHHH
Confidence 4566666555443332 23666666665554
No 12
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=27.41 E-value=2.8e+02 Score=25.69 Aligned_cols=55 Identities=11% Similarity=0.285 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHH-H----Hhhhccc
Q 028719 127 FWYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIM-H----MIKYRYV 181 (205)
Q Consensus 127 FW~~~trat~ia~~~Tff~~fDiPVFWPILl~YFi~Lf~lTm~rqI~-H----MiKyrYv 181 (205)
.|-...-+.++.++-+....+.+|-.|-.++.+.+++.++....+++ + |+|-+|.
T Consensus 262 ~~G~viGalll~~l~~~l~~~~~~~~~~~ii~g~lll~vl~~~~~~~~~~~~~~~~~~~~ 321 (344)
T PRK15432 262 IIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFDGRLRCALERNLRRQKYA 321 (344)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhhhHHHHHHHhhhhhhhhhccc
Confidence 46666777777777777776788988988887777776666533322 2 3665564
No 13
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=26.63 E-value=58 Score=26.01 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=15.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028719 151 VFWPILLFYWLMLFTLTMRRQIMHMIKYR 179 (205)
Q Consensus 151 VFWPILl~YFi~Lf~lTm~rqI~HMiKyr 179 (205)
.+.|++++..++.| +.+|.|-|-+.+++
T Consensus 6 ~ll~lv~i~~i~yF-~~iRPQkKr~K~~~ 33 (109)
T PRK05886 6 LFLPFLLIMGGFMY-FASRRQRKAMQATI 33 (109)
T ss_pred HHHHHHHHHHHHHH-HHccHHHHHHHHHH
Confidence 45566665444444 44677766555543
No 14
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=24.59 E-value=99 Score=25.35 Aligned_cols=13 Identities=38% Similarity=0.955 Sum_probs=8.2
Q ss_pred HhhccCCCcchhHH
Q 028719 142 TFFSAFDVPVFWPI 155 (205)
Q Consensus 142 Tff~~fDiPVFWPI 155 (205)
||++ ++.|.||-+
T Consensus 3 ~~~~-~~~~~~w~~ 15 (167)
T PRK14475 3 SFFN-LSNPEFWVG 15 (167)
T ss_pred CCCC-CCchHHHHH
Confidence 3443 667888844
No 15
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=22.75 E-value=85 Score=29.49 Aligned_cols=43 Identities=19% Similarity=0.521 Sum_probs=25.1
Q ss_pred hcCCCCCCCC------CCCCCCCCCCCCCCCCcc-cCCch-----hHHHHHHHHHHHH
Q 028719 92 FLSPQIDPEY------SDGPTLPTRGSDEFRPFV-RRLPE-----FKFWYCVTRSFCI 137 (205)
Q Consensus 92 FLtPk~Dp~l------~eg~~LP~~~~dEFRPFi-RRLPE-----FkFW~~~trat~i 137 (205)
.+||+|||++ ..|-.+|. |||+--+ .-+.+ |.+|.+|-+-+++
T Consensus 15 ~~tp~F~~e~~~E~L~a~Glqlp~---e~y~~~~E~al~~p~VRRy~~yNs~~fr~~~ 69 (308)
T PF14800_consen 15 WCTPSFDPELCPEELMAQGLQLPV---EDYVHLMESALLDPQVRRYTLYNSRYFRLLV 69 (308)
T ss_pred eecCccChhhCHHHHHhhCccccH---HHHHHHHHHhccchhheeeeeecchHHHHHH
Confidence 6799999998 34666775 4444222 12222 6777776554433
No 16
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=21.95 E-value=1.3e+02 Score=28.39 Aligned_cols=108 Identities=19% Similarity=0.291 Sum_probs=57.9
Q ss_pred eccEEEeehhHHHHHHHHHHhhcCCCCCCCC------CCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHh-
Q 028719 71 VQGFYIITYGLGIYLLNLLMGFLSPQIDPEY------SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTF- 143 (205)
Q Consensus 71 ~~g~YiVtY~LgIylLnlfi~FLtPk~Dp~l------~eg~~LP~~~~dEFRPFiRRLPEFkFW~~~trat~ia~~~Tf- 143 (205)
.+-+|.+.|.+-|..++-|.+++ .+||+. +.|...|+-+.+ ++=.|-|-.--.=.++..+..+++++.+
T Consensus 273 ~~~~~~i~y~~lii~fs~fys~i--~~nP~diA~~Lkk~g~~IpGiRpG--~~T~~yL~~~i~~~t~~Gai~l~~ia~lP 348 (395)
T TIGR02920 273 SSPVGILIYLILQMLLSYFFTFV--NINPKEISKSFRKSGNYIPGIAPG--KDTQRYLNRLARRFCWFGGVFNAFQLGIP 348 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHh--eECHHHHHHHHHHCCCCccCcCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999998887 678876 346667765543 3333333333333344445444444433
Q ss_pred --hc-cCC-Ccch--hHHHHHHHHHHHHHHHHHHHH-HHhhhccccC
Q 028719 144 --FS-AFD-VPVF--WPILLFYWLMLFTLTMRRQIM-HMIKYRYVPF 183 (205)
Q Consensus 144 --f~-~fD-iPVF--WPILl~YFi~Lf~lTm~rqI~-HMiKyrYvPf 183 (205)
.+ .++ ..-+ =|.= +.-++=.++--.|||+ |+.+.+|-.|
T Consensus 349 ~~~~~~~~~~~~~~~ggts-llI~vgv~ldt~~qi~~~~~~~~Y~~~ 394 (395)
T TIGR02920 349 LYFALFVPHLLTEAYIPGQ-FMMITGMSFNIADEIRTILYFDRYKPL 394 (395)
T ss_pred HHHHHHhccccceeehhhh-hhhhhhhHHhHHHHHHHHHHHHhhCCC
Confidence 32 222 2111 1111 2223334444456665 6677777543
No 17
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=21.89 E-value=48 Score=31.48 Aligned_cols=108 Identities=15% Similarity=0.289 Sum_probs=57.2
Q ss_pred eccEEEeehhHHHHHHHHHHhhcCCCCCCCC------CCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHH---H
Q 028719 71 VQGFYIITYGLGIYLLNLLMGFLSPQIDPEY------SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFV---L 141 (205)
Q Consensus 71 ~~g~YiVtY~LgIylLnlfi~FLtPk~Dp~l------~eg~~LP~~~~dEFRPFiRRLPEFkFW~~~trat~ia~~---~ 141 (205)
.+.+|++.|.+-|..++-|..++ .+||+. +.|...|+-++. +|=.|-+..--.=.++..|+.++++ .
T Consensus 280 ~~~~~~~~y~~lii~fs~fys~i--~~nP~diAe~lkk~g~~IpGiRPG--~~T~~yL~~vi~r~t~~Gai~l~~ia~lP 355 (404)
T PRK12417 280 GSPLGVTVYLILQFLLSYFFSFV--NINTKQIAKDMLKSGNYIPGVYPG--KDTERYLNYIARRFSWFGALFVTVIAGIP 355 (404)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHCCCcccCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999888887 457865 345556654433 1211122222222334444444444 4
Q ss_pred HhhccCCCcc----hhHHHHHHHHHHHHHHHHHHH-HHHhhhccccC
Q 028719 142 TFFSAFDVPV----FWPILLFYWLMLFTLTMRRQI-MHMIKYRYVPF 183 (205)
Q Consensus 142 Tff~~fDiPV----FWPILl~YFi~Lf~lTm~rqI-~HMiKyrYvPf 183 (205)
.+...++++. +=+.= +.-++-.++-..||| .|+..++|-.|
T Consensus 356 ~~~~~~~~~~~~~~~ggts-llI~Vgv~ldt~~qi~s~l~~~~Y~~~ 401 (404)
T PRK12417 356 LYFTLFDPHLSTEIYFSGQ-FMMFVGMSFNIADEIRALLYFDKYKPL 401 (404)
T ss_pred HHHHhcCCccccceeccch-heehhhhHHHHHHHHHHHHHHHHHhHH
Confidence 4454455541 11111 112233344445555 57888888766
No 18
>COG1988 Predicted membrane-bound metal-dependent hydrolases [General function prediction only]
Probab=21.23 E-value=5e+02 Score=21.87 Aligned_cols=103 Identities=16% Similarity=0.141 Sum_probs=55.0
Q ss_pred HHHhheeeccEEEe--ehhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCcccCCchh--HHHHHHHHHHHHHH
Q 028719 64 YAVRVYLVQGFYII--TYGLGIYLLNLLMGFLSPQIDPEYSDGPTLPTRGSDEFRPFVRRLPEF--KFWYCVTRSFCIGF 139 (205)
Q Consensus 64 f~lRv~~~~g~YiV--tY~LgIylLnlfi~FLtPk~Dp~l~eg~~LP~~~~dEFRPFiRRLPEF--kFW~~~trat~ia~ 139 (205)
+.++.....+-+.- .-.+....++.+..++|+..-|-+ -|-.. +..++.......- -|+-..+.......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~Hil~D~~t~~g~~~l-----~p~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 156 (190)
T COG1988 83 LLLFLFFLPLIFKDLLLGLFLGVFSHILLDALTTAGVPLL-----WPFSD-TRWSALLLIITFDPVAFLSHLIAILFTVL 156 (190)
T ss_pred HHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhCCCceE-----eeccC-CceeeeeeccccCchHHHHHHHHHHHHHH
Confidence 33343444444443 235566778889999998775543 11111 1111111111111 44444444333333
Q ss_pred HHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028719 140 VLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYR 179 (205)
Q Consensus 140 ~~Tff~~fDiPVFWPILl~YFi~Lf~lTm~rqI~HMiKyr 179 (205)
...+.. ++=|. .|.......+.+.+.++++|.+
T Consensus 157 ~~~~~~-----~~~~~--~~~~~~~~~~l~~i~~~~~~~~ 189 (190)
T COG1988 157 GVLFGA-----VFLPK--GYLLLLMLWTLRIIVDRSIKLK 189 (190)
T ss_pred hhhhhH-----HHhhh--hHHHHHHHHHHHHHHHHHHHhc
Confidence 333332 55444 8899999999999999999875
No 19
>COG0817 RuvC Holliday junction resolvasome, endonuclease subunit [DNA replication, recombination, and repair]
Probab=20.78 E-value=55 Score=27.99 Aligned_cols=42 Identities=14% Similarity=0.091 Sum_probs=22.9
Q ss_pred HHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028719 137 IGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKY 178 (205)
Q Consensus 137 ia~~~Tff~~fDiPVFWPILl~YFi~Lf~lTm~rqI~HMiKy 178 (205)
+.++.---.-.++..|-|-.+==-++=..=.=|+||+||+|.
T Consensus 84 v~~la~~~~~l~v~eY~p~~VKkavvG~G~A~K~QVq~MV~~ 125 (160)
T COG0817 84 VALLAAARRGLPVFEYTPNQVKKAVVGNGKADKEQVQHMVKR 125 (160)
T ss_pred HHHHHHHHcCCChhhccHHHHHHHhhcCCcccHHHHHHHHHH
Confidence 333444444455555666554332322333348999999984
Done!