BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028724
         (205 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8JU62|VP1_AQRVC Outer capsid protein VP1 OS=Aquareovirus C (isolate Golden
           shiner/USA/GSRV/1977) GN=S1 PE=3 SV=1
          Length = 1299

 Score = 32.0 bits (71), Expect = 3.3,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 10/102 (9%)

Query: 63  PITNSFHTPYP-TTNFNQEDMRVQTPYSSIPSSSFSYSSSS-SPPTSYGYHPSITMGLGD 120
           PIT+    PY  T +FN     V+TP      + + Y  S  S P +YG H         
Sbjct: 147 PITSITKFPYQWTIDFNVTADSVRTPAGCKYITLYGYDPSRPSTPATYGKHRPTY----- 201

Query: 121 YERSTIIYGDSQPTTTATSWNPVTGISETQHFTQPNMNRHVL 162
              +T+ Y  + P  +    N   G +  +HF  P    H+L
Sbjct: 202 ---ATVFYYSTLPARSRLLANLAAGPTVLEHFDSPTYGPHLL 240


>sp|Q9NQ32|CK016_HUMAN Uncharacterized protein C11orf16 OS=Homo sapiens GN=C11orf16 PE=2
           SV=3
          Length = 467

 Score = 30.0 bits (66), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 32/66 (48%)

Query: 136 TATSWNPVTGISETQHFTQPNMNRHVLNLPVEDPQLKRSKKHRSHSMGSSSQNSESSDTQ 195
             T+W P+T  SE      P +      LP+E P+ ++   H   ++ SSS +S   D  
Sbjct: 288 CGTTWWPLTRTSEVMARELPELEPTAQLLPLEGPKEEKVAMHAPLAVSSSSSSSCEQDGV 347

Query: 196 EVDLEL 201
           E DLE+
Sbjct: 348 ENDLEM 353


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.306    0.122    0.349 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,177,856
Number of Sequences: 539616
Number of extensions: 3381226
Number of successful extensions: 14250
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 151
Number of HSP's that attempted gapping in prelim test: 12691
Number of HSP's gapped (non-prelim): 892
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.9 bits)