Query 028724
Match_columns 205
No_of_seqs 44 out of 46
Neff 2.5
Searched_HMMs 29240
Date Tue Mar 26 03:00:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qwm_A Iqsec1, IQ motif and SE 23.2 20 0.0007 28.4 0.4 15 44-58 124-138 (140)
2 2co9_A Thymus high mobility gr 22.0 58 0.002 23.1 2.6 9 31-39 14-22 (102)
3 1fmh_A General control protein 14.2 52 0.0018 20.8 0.7 13 43-55 2-14 (33)
4 1ng0_A Coat protein; sobemovir 13.0 42 0.0015 28.7 0.0 12 114-125 101-112 (253)
5 2e6o_A HMG box-containing prot 12.5 1.3E+02 0.0046 20.4 2.5 8 33-40 16-23 (87)
6 1wii_A Hypothetical UPF0222 pr 9.4 1.6E+02 0.0056 21.4 2.1 7 23-29 2-8 (85)
7 3jsy_A Acidic ribosomal protei 8.7 1.2E+02 0.004 24.8 1.2 14 40-53 28-41 (213)
8 3sgf_H 50S ribosomal protein L 7.6 1.3E+02 0.0043 23.5 0.9 17 39-55 30-46 (165)
9 2j01_J 50S ribosomal protein L 6.9 1.5E+02 0.0053 23.0 1.1 15 39-53 29-43 (173)
10 1wh5_A ZF-HD homeobox family p 6.7 5.3E+02 0.018 17.5 3.7 32 19-50 1-32 (80)
No 1
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=23.25 E-value=20 Score=28.37 Aligned_cols=15 Identities=27% Similarity=0.497 Sum_probs=12.6
Q ss_pred hhhhhhhhhcccccc
Q 028724 44 VAQLEKIRLHGQMAC 58 (205)
Q Consensus 44 VAqLEkiRl~~~~~~ 58 (205)
|+++|++||+.||..
T Consensus 124 ~~eme~~rie~ele~ 138 (140)
T 3qwm_A 124 VQEMEKHRIESELEK 138 (140)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 678999999988754
No 2
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.97 E-value=58 Score=23.10 Aligned_cols=9 Identities=22% Similarity=0.840 Sum_probs=4.1
Q ss_pred CCCCCCCCC
Q 028724 31 NSDKPKQPQ 39 (205)
Q Consensus 31 ~~~k~kqpq 39 (205)
...++|.|-
T Consensus 14 dp~~pKrP~ 22 (102)
T 2co9_A 14 DPNEPQKPV 22 (102)
T ss_dssp CCCSCCCCC
T ss_pred CCCCCCCCC
Confidence 334455553
No 3
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=14.19 E-value=52 Score=20.84 Aligned_cols=13 Identities=46% Similarity=0.411 Sum_probs=9.2
Q ss_pred chhhhhhhhhccc
Q 028724 43 GVAQLEKIRLHGQ 55 (205)
Q Consensus 43 GVAqLEkiRl~~~ 55 (205)
-||||||--.|.+
T Consensus 2 evaqlekevaqae 14 (33)
T 1fmh_A 2 EVAQLEKEVAQAE 14 (33)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4899998665544
No 4
>1ng0_A Coat protein; sobemovirus, virus assembly, icosahedral virus; 2.70A {Cocksfoot mottle virus} SCOP: b.121.4.7
Probab=12.96 E-value=42 Score=28.71 Aligned_cols=12 Identities=8% Similarity=0.102 Sum_probs=6.1
Q ss_pred ccccCCcccccc
Q 028724 114 ITMGLGDYERST 125 (205)
Q Consensus 114 ~~mg~~~Y~rtn 125 (205)
++..+..|.=++
T Consensus 101 ~A~~y~kYr~~~ 112 (253)
T 1ng0_A 101 IAKAYALWRPKH 112 (253)
T ss_dssp HHTTEEEEEEEE
T ss_pred HHhhhcceeeeE
Confidence 455555555443
No 5
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=12.54 E-value=1.3e+02 Score=20.42 Aligned_cols=8 Identities=38% Similarity=0.580 Sum_probs=4.2
Q ss_pred CCCCCCCC
Q 028724 33 DKPKQPQR 40 (205)
Q Consensus 33 ~k~kqpqR 40 (205)
.++|.|.=
T Consensus 16 ~~pKrP~~ 23 (87)
T 2e6o_A 16 NKCKRPMN 23 (87)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 45665543
No 6
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=9.39 E-value=1.6e+02 Score=21.39 Aligned_cols=7 Identities=29% Similarity=0.264 Sum_probs=3.3
Q ss_pred CcccCCC
Q 028724 23 SSRKGKK 29 (205)
Q Consensus 23 s~r~~kk 29 (205)
++||+++
T Consensus 2 ~rRKs~~ 8 (85)
T 1wii_A 2 SSGSSGR 8 (85)
T ss_dssp CCCCCCC
T ss_pred CCccccC
Confidence 3455443
No 7
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=8.69 E-value=1.2e+02 Score=24.79 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=12.4
Q ss_pred CCcchhhhhhhhhc
Q 028724 40 RGLGVAQLEKIRLH 53 (205)
Q Consensus 40 RGlGVAqLEkiRl~ 53 (205)
|||+|+||-.||-+
T Consensus 28 ~gl~~~ql~~lR~~ 41 (213)
T 3jsy_A 28 MDVPAPQLQEIRDK 41 (213)
T ss_dssp CSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999854
No 8
>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*
Probab=7.62 E-value=1.3e+02 Score=23.49 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=14.4
Q ss_pred CCCcchhhhhhhhhccc
Q 028724 39 QRGLGVAQLEKIRLHGQ 55 (205)
Q Consensus 39 qRGlGVAqLEkiRl~~~ 55 (205)
-|||.|+|+..||-+=.
T Consensus 30 ~~gltv~q~~~LR~~lr 46 (165)
T 3sgf_H 30 SRGVTVDKMTELRKAGR 46 (165)
T ss_dssp TTCCHHHHHHHTTTTTS
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 48999999999997644
No 9
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=6.94 E-value=1.5e+02 Score=22.98 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=13.1
Q ss_pred CCCcchhhhhhhhhc
Q 028724 39 QRGLGVAQLEKIRLH 53 (205)
Q Consensus 39 qRGlGVAqLEkiRl~ 53 (205)
-|||.|+|+..||-+
T Consensus 29 ~~gltv~~~~~LR~~ 43 (173)
T 2j01_J 29 YQGLPAKETHALRQA 43 (173)
T ss_pred cCCCCHHHHHHHHHH
Confidence 489999999999964
No 10
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=6.68 E-value=5.3e+02 Score=17.47 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=0.0
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCcchhhhhhh
Q 028724 19 SSSSSSRKGKKSNSDKPKQPQRGLGVAQLEKI 50 (205)
Q Consensus 19 s~~~s~r~~kk~~~~k~kqpqRGlGVAqLEki 50 (205)
++.|++-.+...+..++|...--+--.||+.|
T Consensus 1 gS~g~~g~~~~~~~~~~rR~Rt~ft~~Ql~~L 32 (80)
T 1wh5_A 1 GSSGSSGSSAEAGGGIRKRHRTKFTAEQKERM 32 (80)
T ss_dssp CCSSSCCSCSCCCCCCSCCCSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCccCCHHHHHHH
Done!