Query 028724
Match_columns 205
No_of_seqs 44 out of 46
Neff 2.5
Searched_HMMs 13730
Date Tue Mar 26 03:00:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028724.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028724hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bm9a_ a.4.5.7 (A:) Replicati 14.9 28 0.002 25.7 1.3 24 38-63 27-50 (120)
2 d1r7aa1 b.71.1.1 (A:435-504) S 9.8 32 0.0023 23.3 0.2 11 36-46 31-41 (70)
3 d1oeya_ d.15.2.2 (A:) Neutroph 8.2 69 0.005 21.9 1.4 26 39-64 21-51 (82)
4 d1udxa1 b.117.1.1 (A:1-156) Ob 5.8 56 0.0041 23.9 -0.1 11 193-203 146-156 (156)
5 d1q90d_ f.32.1.1 (D:) Subunit 5.6 61 0.0044 24.0 -0.0 11 1-11 19-29 (156)
6 d2heka1 a.211.1.1 (A:1-369) Hy 5.5 76 0.0055 23.8 0.5 26 42-68 56-90 (369)
7 d1umqa_ a.4.1.12 (A:) Photosyn 5.3 1.6E+02 0.012 17.7 2.0 27 33-59 6-32 (60)
8 d1lnqa2 f.14.1.1 (A:19-98) Pot 5.3 1.1E+02 0.0081 19.0 1.2 13 124-136 40-52 (80)
9 d1lnza1 b.117.1.1 (A:1-157) Ob 5.0 87 0.0063 22.8 0.5 12 192-203 146-157 (157)
10 d1zava1 d.58.62.1 (A:1-177) Ri 3.9 1.5E+02 0.011 21.1 1.2 15 39-53 29-43 (177)
No 1
>d1bm9a_ a.4.5.7 (A:) Replication terminator protein (RTP) {Bacillus subtilis [TaxId: 1423]}
Probab=14.92 E-value=28 Score=25.72 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=19.3
Q ss_pred CCCCcchhhhhhhhhcccccccccCC
Q 028724 38 PQRGLGVAQLEKIRLHGQMACNNYHP 63 (205)
Q Consensus 38 pqRGlGVAqLEkiRl~~~~~~~~~~P 63 (205)
.+||-|.--||-+| +|.+..+|+|
T Consensus 27 q~r~YG~q~L~~Lr--~eFk~~Gy~P 50 (120)
T d1bm9a_ 27 QERLYGLKLLEVLR--SEFKEIGFKP 50 (120)
T ss_dssp TTCCBSTTHHHHHH--HHHTTTTCCC
T ss_pred hccchHHHHHHHHH--HHHHhcCCCC
Confidence 46899999999887 6677777777
No 2
>d1r7aa1 b.71.1.1 (A:435-504) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]}
Probab=9.76 E-value=32 Score=23.27 Aligned_cols=11 Identities=55% Similarity=1.005 Sum_probs=8.4
Q ss_pred CCCCCCcchhh
Q 028724 36 KQPQRGLGVAQ 46 (205)
Q Consensus 36 kqpqRGlGVAq 46 (205)
-.|.|||||..
T Consensus 31 FeP~~GlGv~N 41 (70)
T d1r7aa1 31 FEPKRGLGVDN 41 (70)
T ss_dssp ECGGGSCSTTC
T ss_pred EcCCccccccC
Confidence 36889999853
No 3
>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.16 E-value=69 Score=21.93 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=21.3
Q ss_pred CCCcchhhh-----hhhhhcccccccccCCC
Q 028724 39 QRGLGVAQL-----EKIRLHGQMACNNYHPI 64 (205)
Q Consensus 39 qRGlGVAqL-----EkiRl~~~~~~~~~~Pl 64 (205)
+||+.+++| +||-++.+-..+.|.|.
T Consensus 21 ~~G~~y~~L~~lvs~KL~l~~~~~~LSY~~~ 51 (82)
T d1oeya_ 21 QPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (82)
T ss_dssp CTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred cCCCCHHHHHHHHHHHhCCChhheEEEeccC
Confidence 699999998 67888888888888763
No 4
>d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=5.84 E-value=56 Score=23.92 Aligned_cols=11 Identities=36% Similarity=0.610 Sum_probs=7.6
Q ss_pred CCcccCceeee
Q 028724 193 DTQEVDLELRL 203 (205)
Q Consensus 193 D~qe~DLELrL 203 (205)
+..+|.|||||
T Consensus 146 ee~~i~LELKL 156 (156)
T d1udxa1 146 EKRRLRLELML 156 (156)
T ss_dssp CEEEEEEEECC
T ss_pred eEEEEEEEEeC
Confidence 44458888887
No 5
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.58 E-value=61 Score=23.99 Aligned_cols=11 Identities=45% Similarity=0.957 Sum_probs=6.9
Q ss_pred CCCCCCCCCCC
Q 028724 1 MGSSYFGEPNL 11 (205)
Q Consensus 1 m~ss~fg~~~~ 11 (205)
|+.+|+|+|-|
T Consensus 19 ~~~n~~~~Pfw 29 (156)
T d1q90d_ 19 MGHNTYGEPAW 29 (156)
T ss_dssp CCGGGSSEECT
T ss_pred CCCCCcCCCCC
Confidence 55666666665
No 6
>d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]}
Probab=5.54 E-value=76 Score=23.76 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=17.1
Q ss_pred cchhhhhh-----hhhcc----cccccccCCCCCCC
Q 028724 42 LGVAQLEK-----IRLHG----QMACNNYHPITNSF 68 (205)
Q Consensus 42 lGVAqLEk-----iRl~~----~~~~~~~~Pl~~p~ 68 (205)
|||++|=+ |++.+ ++||+ .|=+|.||
T Consensus 56 LgV~~lar~l~~~l~~~~~~~v~~A~L-lHDiGh~P 90 (369)
T d2heka1 56 LGVYHITERICESLKVKEKELVKLAGL-LHDLGHPP 90 (369)
T ss_dssp HHHHHHHHHHHHHHTCTTHHHHHHHHH-TTTTTCCS
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHH-Hhhcccch
Confidence 89999854 44443 56776 67777763
No 7
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.29 E-value=1.6e+02 Score=17.74 Aligned_cols=27 Identities=7% Similarity=0.156 Sum_probs=20.3
Q ss_pred CCCCCCCCCcchhhhhhhhhccccccc
Q 028724 33 DKPKQPQRGLGVAQLEKIRLHGQMACN 59 (205)
Q Consensus 33 ~k~kqpqRGlGVAqLEkiRl~~~~~~~ 59 (205)
+-|-.+...+-++++||-.|+.-+...
T Consensus 6 ~~p~~~~~~~~l~~~Er~~I~~aL~~~ 32 (60)
T d1umqa_ 6 SLPPPPENPMSADRVRWEHIQRIYEMC 32 (60)
T ss_dssp SSCCCSCSSSCHHHHHHHHHHHHHHHT
T ss_pred CCCcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 445567788889999998888766553
No 8
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}
Probab=5.27 E-value=1.1e+02 Score=19.03 Aligned_cols=13 Identities=46% Similarity=0.802 Sum_probs=10.0
Q ss_pred cceeeCCCCCCcc
Q 028724 124 STIIYGDSQPTTT 136 (205)
Q Consensus 124 tnIryGd~qp~~~ 136 (205)
++|.|||.-|.+.
T Consensus 40 tTiGyGD~~P~t~ 52 (80)
T d1lnqa2 40 ATVGYGDYSPSTP 52 (80)
T ss_dssp TTCCCSSCCCCCS
T ss_pred eeccCCCCCCCCc
Confidence 7899999887543
No 9
>d1lnza1 b.117.1.1 (A:1-157) Obg GTP-binding protein N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=4.98 E-value=87 Score=22.80 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=8.3
Q ss_pred CCCcccCceeee
Q 028724 192 SDTQEVDLELRL 203 (205)
Q Consensus 192 ~D~qe~DLELrL 203 (205)
=+.-.|.|||||
T Consensus 146 Ge~~~i~LeLKL 157 (157)
T d1lnza1 146 GKERYIVLELKV 157 (157)
T ss_dssp CCEEEEEEEEEC
T ss_pred ceEEEEEEEEEC
Confidence 355667888876
No 10
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=3.88 E-value=1.5e+02 Score=21.07 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=12.7
Q ss_pred CCCcchhhhhhhhhc
Q 028724 39 QRGLGVAQLEKIRLH 53 (205)
Q Consensus 39 qRGlGVAqLEkiRl~ 53 (205)
-+||-|+|++.||-+
T Consensus 29 y~gLtv~e~~~LR~~ 43 (177)
T d1zava1 29 FLGFTVADLTELRSR 43 (177)
T ss_dssp CTTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 379999999999953
Done!