Citrus Sinensis ID: 028725

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNSAR
Secondary Structure (PSIPRED)
ccccccccccEEEEcHHHHHHHHcccccccccccccccEEEEEEEccccEEEEEEEccccccHHHHHHHHHHHHHcccccccccEEEEEcccccccccccEEEEEEEEEccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEccEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHccccHHccccccccccEEccEcccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHEEEEEEccccccccccccEEEEEEcccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHHHEEEccccccHHcHccHHEEccccccccEEEEccccccHHHHcc
Coil and Loop (DISEMBL)
mklgalglpayrtfSLEELEEAtnnfdtsafmgegskgqmyrgrlkngTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSalghcfecyfddssvsRIFLIFEyvpngtlrswisghawqslTWTQRISAAIGVARGIQflhtgivpgvfsnnlkiTDILLDQNLVAKIssynlpllaenaekvghvtpysgsinptnsar
Flexible Loop (DISEMBL)
mklgalglpayRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENaekvghvtpysgsinptnsar
Low Complexity Region (SEG)
MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNSAR
Disordered region (IsUnstruct)
********PAYRTFSL**********************QMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH***************
Disordered Region (DISOPRED)
**********YRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIA****************HHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENA**VGHVTPYSGSINPTNSA*
Disordered Region (DISEMBL)
MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNSAR
Disordered Region (DISPRO)
****ALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNSAR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNSAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q8LFN2	802	Probable inactive leucine	yes	no	0.956	0.244	0.776	4e-88
Q9M9S4	728	Probable LRR receptor-lik	no	no	0.902	0.254	0.494	8e-51
C0LGJ9	742	Probable LRR receptor-lik	no	no	0.912	0.252	0.449	2e-44
Q9LK35	855	Receptor-like protein kin	no	no	0.780	0.187	0.407	8e-33
Q9SJT0	871	Probable receptor-like pr	no	no	0.804	0.189	0.413	4e-32
Q9SA72	849	Probable receptor-like pr	no	no	0.780	0.188	0.425	9e-32
Q9T020	878	Probable receptor-like pr	no	no	0.780	0.182	0.407	1e-31
Q9FID9	880	Probable receptor-like pr	no	no	0.848	0.197	0.362	2e-30
Q9FLJ8	842	Probable receptor-like pr	no	no	0.839	0.204	0.390	5e-30
Q3E8W4	858	Receptor-like protein kin	no	no	0.843	0.201	0.397	1e-29

>sp|Q8LFN2|Y3037_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana GN=At3g03770 PE=2 SV=1

 Score =  323 bits (829), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 153/197 (77%), Positives = 171/197 (86%), Gaps = 1/197 (0%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           MKLG LGLPAYRTFSLEELE ATNNF++SAFMGEGS+GQ+YRGRLK+G+F+AIRCLKMKK
Sbjct: 452 MKLGGLGLPAYRTFSLEELEYATNNFESSAFMGEGSQGQIYRGRLKDGSFVAIRCLKMKK 511

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS- 119
           S ST+N MHHIELI+KLRH HLVS LGHCFECY DDS+VSR+F +FEYVPNG LR+WIS 
Sbjct: 512 SCSTQNLMHHIELIAKLRHRHLVSVLGHCFECYLDDSTVSRMFFVFEYVPNGELRTWISD 571

Query: 120 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 179
           GH  + LTW QRIS AIGVA+GIQFLHTGIVPGV+ NNLK+TDILLD NL AK+SSYNLP
Sbjct: 572 GHMGRLLTWEQRISVAIGVAKGIQFLHTGIVPGVYDNNLKMTDILLDNNLAAKLSSYNLP 631

Query: 180 LLAENAEKVGHVTPYSG 196
           LL E   KVG V   SG
Sbjct: 632 LLVEGLGKVGQVGSRSG 648

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9S4|Y1143_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana GN=At1g14390 PE=2 SV=1

 Score =  199 bits (507), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 97/196 (49%), Positives = 132/196 (67%), Gaps = 11/196 (5%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           M+   +GL  YR FSLEELEEATNNFD     GE    Q+Y+G L+ G  + +RC+K+K+
Sbjct: 422 MRSAVIGLSPYRVFSLEELEEATNNFDAENLCGE----QLYKGCLREGIAVTVRCIKLKQ 477

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD--DSSVSRIFLIFEYVPNGTLRSWI 118
            +ST+N    +E++SKLRH HLVS LGHC   Y D    + S IF++ EY+ NG+LR ++
Sbjct: 478 KNSTQNLAQQMEVLSKLRHMHLVSVLGHCIGTYQDHHPYAGSTIFIVQEYISNGSLRDYL 537

Query: 119 SG-HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN 177
           +     + L W QR+S AIGVARGIQFLHTG+ PG+F NNL+I ++LLD+ L  K+S Y+
Sbjct: 538 TDWRKKEVLKWPQRMSIAIGVARGIQFLHTGVAPGIFGNNLEIENVLLDETLTVKLSGYS 597

Query: 178 LPLLAENAEKVGHVTP 193
           +PL      KVG  +P
Sbjct: 598 IPL----PSKVGAESP 609

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGJ9|Y2278_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g02780 OS=Arabidopsis thaliana GN=At2g02780 PE=2 SV=1

 Score =  178 bits (452), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/198 (44%), Positives = 126/198 (63%), Gaps = 11/198 (5%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           M+   +GLP YR FSLEELEEATN+FD ++   E    Q+YRG L+ G  + +R +K+K+
Sbjct: 427 MRSAVIGLPPYRVFSLEELEEATNDFDAASLFCE----QLYRGCLREGIPVTVRVIKLKQ 482

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS--RIFLIFEYVPNGTLRSWI 118
               ++    +E++SKLRH HLVS LGH      D +  +   IF++ EY+ +G+LR ++
Sbjct: 483 KSLPQSLAQQMEVLSKLRHMHLVSVLGHSIASNQDHNQHAGHTIFIVQEYISSGSLRDFL 542

Query: 119 SG-HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN 177
           +     + L W QR++ AIGVARGIQFLH G+ PG+F NNLKI +I+LD+ L  KIS Y 
Sbjct: 543 TNCRKKEVLKWPQRMAIAIGVARGIQFLHMGVAPGIFGNNLKIENIMLDETLTVKISGYT 602

Query: 178 LPLLAENAEKVGHVTPYS 195
           +PL      KVG   P +
Sbjct: 603 IPL----PSKVGEERPQA 616

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LK35|THE1_ARATH Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1

 Score =  140 bits (352), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 103/167 (61%), Gaps = 7/167 (4%)

Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHI 71
           R F  +E+ +ATN FD S+ +G G  G++Y+G L++GT +A++    +       F   I
Sbjct: 496 RCFMFQEIMDATNKFDESSLLGVGGFGRVYKGTLEDGTKVAVKRGNPRSEQGMAEFRTEI 555

Query: 72  ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQR 131
           E++SKLRH HLVS +G+C E        S + L++EY+ NG LRS + G     L+W QR
Sbjct: 556 EMLSKLRHRHLVSLIGYCDE-------RSEMILVYEYMANGPLRSHLYGADLPPLSWKQR 608

Query: 132 ISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           +   IG ARG+ +LHTG    +   ++K T+ILLD+NLVAK++ + L
Sbjct: 609 LEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDENLVAKVADFGL 655

Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner. Mediates the response of growing plant cells to the perturbation of cellulose synthesis and may act as a cell-wall-integrity sensor. Controls ectopic-lignin accumulation in cellulose-deficient mutant backgrounds.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9SJT0|Y2214_ARATH Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=3 SV=1

 Score =  137 bits (346), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 102/174 (58%), Gaps = 9/174 (5%)

Query: 5   ALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST 64
           ALGL  Y  FSL EL+E T NFD S  +G G  G +Y G + +GT +AI+    +     
Sbjct: 506 ALGLGRY--FSLSELQEVTKNFDASEIIGVGGFGNVYIGTIDDGTQVAIKRGNPQSEQGI 563

Query: 65  RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQ 124
             F   I+++SKLRH HLVS +G+C E        + + L++EY+ NG  R  + G    
Sbjct: 564 TEFHTEIQMLSKLRHRHLVSLIGYCDEN-------AEMILVYEYMSNGPFRDHLYGKNLS 616

Query: 125 SLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
            LTW QR+   IG ARG+ +LHTG   G+   ++K T+ILLD+ LVAK++ + L
Sbjct: 617 PLTWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKSTNILLDEALVAKVADFGL 670

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9SA72|Y1357_ARATH Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=1 SV=1

 Score =  136 bits (343), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 100/167 (59%), Gaps = 7/167 (4%)

Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHI 71
           R F+L E+  AT NFD    +G G  G++YRG L++GT IAI+            F   I
Sbjct: 506 RKFTLAEIRAATKNFDDGLAIGVGGFGKVYRGELEDGTLIAIKRATPHSQQGLAEFETEI 565

Query: 72  ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQR 131
            ++S+LRH HLVS +G C E        + + L++EY+ NGTLRS + G     L+W QR
Sbjct: 566 VMLSRLRHRHLVSLIGFCDEH-------NEMILVYEYMANGTLRSHLFGSNLPPLSWKQR 618

Query: 132 ISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           + A IG ARG+ +LHTG   G+   ++K T+ILLD+N VAK+S + L
Sbjct: 619 LEACIGSARGLHYLHTGSERGIIHRDVKTTNILLDENFVAKMSDFGL 665

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9T020|Y4391_ARATH Probable receptor-like protein kinase At4g39110 OS=Arabidopsis thaliana GN=At4g39110 PE=1 SV=1

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 99/167 (59%), Gaps = 7/167 (4%)

Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHI 71
           R FSL EL+EAT NF+ S  +G G  G +Y G L +GT +A++    +       F   I
Sbjct: 512 RYFSLSELQEATKNFEASQIIGVGGFGNVYIGTLDDGTKVAVKRGNPQSEQGITEFQTEI 571

Query: 72  ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQR 131
           +++SKLRH HLVS +G+C E        S + L++E++ NG  R  + G     LTW QR
Sbjct: 572 QMLSKLRHRHLVSLIGYCDEN-------SEMILVYEFMSNGPFRDHLYGKNLAPLTWKQR 624

Query: 132 ISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           +   IG ARG+ +LHTG   G+   ++K T+ILLD+ LVAK++ + L
Sbjct: 625 LEICIGSARGLHYLHTGTAQGIIHRDVKSTNILLDEALVAKVADFGL 671

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9FID9|Y5389_ARATH Probable receptor-like protein kinase At5g38990 OS=Arabidopsis thaliana GN=At5g38990 PE=2 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 112/185 (60%), Gaps = 11/185 (5%)

Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNG-TFIAIRCLKMKKSHSTRNFMHH 70
           R FS+ E++ ATN+F+    +G G  G +Y+GR+  G T +A++ L++  +   + F   
Sbjct: 511 RRFSIYEIKSATNDFEEKLIIGVGGFGSVYKGRIDGGATLVAVKRLEITSNQGAKEFDTE 570

Query: 71  IELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI---SGHAWQSLT 127
           +E++SKLRH HLVS +G+C     DD +   + L++EY+P+GTL+  +      +   L+
Sbjct: 571 LEMLSKLRHVHLVSLIGYC-----DDDN--EMVLVYEYMPHGTLKDHLFRRDKASDPPLS 623

Query: 128 WTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK 187
           W +R+   IG ARG+Q+LHTG    +   ++K T+ILLD+N VAK+S + L  +   +  
Sbjct: 624 WKRRLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVAKVSDFGLSRVGPTSAS 683

Query: 188 VGHVT 192
             HV+
Sbjct: 684 QTHVS 688

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9FLJ8|Y5613_ARATH Probable receptor-like protein kinase At5g61350 OS=Arabidopsis thaliana GN=At5g61350 PE=2 SV=1

 Score =  130 bits (328), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 73/187 (39%), Positives = 103/187 (55%), Gaps = 15/187 (8%)

Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHI 71
           R F   EL+ AT NFD +A  G G  G++Y G +  GT +AI+            F   I
Sbjct: 511 RYFPFTELQTATQNFDENAVCGVGGFGKVYIGEIDGGTQVAIKRGSQSSEQGINEFQTEI 570

Query: 72  ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISG------HAWQS 125
           +++SKLRH HLVS +G C E          + L++EY+ NG LR  + G      +   +
Sbjct: 571 QMLSKLRHRHLVSLIGFCDEN-------KEMILVYEYMSNGPLRDHLYGSKENDPNPIPT 623

Query: 126 LTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENA 185
           L+W QR+   IG ARG+ +LHTG   G+   ++K T+ILLD+NLVAK+S + L   A   
Sbjct: 624 LSWKQRLEICIGSARGLHYLHTGAAQGIIHRDVKTTNILLDENLVAKVSDFGLSKDAPMD 683

Query: 186 EKVGHVT 192
           E  GHV+
Sbjct: 684 E--GHVS 688

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q3E8W4|ANX2_ARATH Receptor-like protein kinase ANXUR2 OS=Arabidopsis thaliana GN=ANX2 PE=2 SV=1

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/181 (39%), Positives = 102/181 (56%), Gaps = 8/181 (4%)

Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHI 71
           R FSL E++  T+NFD S  +G G  G++Y+G +  GT +AI+            F   I
Sbjct: 507 RRFSLSEIKHGTHNFDESNVIGVGGFGKVYKGVIDGGTKVAIKKSNPNSEQGLNEFETEI 566

Query: 72  ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQR 131
           EL+S+LRH HLVS +G+C E          + LI++Y+  GTLR  +       LTW +R
Sbjct: 567 ELLSRLRHKHLVSLIGYCDEG-------GEMCLIYDYMSLGTLREHLYNTKRPQLTWKRR 619

Query: 132 ISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV 191
           +  AIG ARG+ +LHTG    +   ++K T+ILLD+N VAK+S + L     N    GHV
Sbjct: 620 LEIAIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMNG-GHV 678

Query: 192 T 192
           T
Sbjct: 679 T 679

Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
224144836	774	predicted protein [Populus trichocarpa]	1.0	0.264	0.834	1e-98
255569464	782	leucine-rich repeat protein, putative [R	1.0	0.262	0.805	6e-96
224123880	784	predicted protein [Populus trichocarpa]	1.0	0.261	0.815	9e-93
225439195	786	PREDICTED: probable inactive leucine-ric	0.917	0.239	0.857	4e-92
147854936	746	hypothetical protein VITISV_020032 [Viti	0.917	0.252	0.857	8e-92
297833056	802	hypothetical protein ARALYDRAFT_477625 [	0.956	0.244	0.791	1e-87
18396660	802	leucine-rich repeat protein kinase-like	0.956	0.244	0.776	2e-86
27311539	652	expressed protein [Arabidopsis thaliana]	0.917	0.288	0.783	4e-84
6006864	803	hypothetical protein [Arabidopsis thalia	0.917	0.234	0.783	4e-84
357508805	774	hypothetical protein MTR_7g086420 [Medic	0.882	0.233	0.774	1e-80

>gi|224144836|ref|XP_002325432.1| predicted protein [Populus trichocarpa] gi|222862307|gb|EEE99813.1| predicted protein [Populus trichocarpa]

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 172/206 (83%), Positives = 187/206 (90%), Gaps = 1/206 (0%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           MKLGALGLP YRTFSLEE+EEATNNFDTSAFMGEGS+GQMYRGRLK+G+F+AIRCLKMK+
Sbjct: 450 MKLGALGLPPYRTFSLEEVEEATNNFDTSAFMGEGSQGQMYRGRLKDGSFVAIRCLKMKR 509

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS- 119
           SHST+NFMHHIELISKLRH HLVSALGHCFECY DDSSVSRIFL+FEYVPNGTLRSWIS 
Sbjct: 510 SHSTQNFMHHIELISKLRHRHLVSALGHCFECYLDDSSVSRIFLVFEYVPNGTLRSWISG 569

Query: 120 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 179
           GHAWQ L WT RI+AAIGVA+GIQFLHTGIVPGV+SNNLKITD+LLDQNL+AKISSYNLP
Sbjct: 570 GHAWQKLQWTHRIAAAIGVAKGIQFLHTGIVPGVYSNNLKITDVLLDQNLIAKISSYNLP 629

Query: 180 LLAENAEKVGHVTPYSGSINPTNSAR 205
           LLAEN   V H T    S + + SAR
Sbjct: 630 LLAENKGMVVHGTSSGASKDLSTSAR 655

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569464|ref|XP_002525699.1| leucine-rich repeat protein, putative [Ricinus communis] gi|223534999|gb|EEF36682.1| leucine-rich repeat protein, putative [Ricinus communis]

 Score =  355 bits (911), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 166/206 (80%), Positives = 186/206 (90%), Gaps = 1/206 (0%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           MKLGALG+PAYRTFSLEELEEATNNFDTSAF+GEGS+GQMYRGRLKNG+++AIRCLKMK+
Sbjct: 450 MKLGALGIPAYRTFSLEELEEATNNFDTSAFIGEGSQGQMYRGRLKNGSYVAIRCLKMKR 509

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS- 119
           S+ST+NFMHHIELISKLRH HL+SALGHCFECY DDSSVSRIFL+FEYVPNGTLRSWIS 
Sbjct: 510 SYSTQNFMHHIELISKLRHRHLISALGHCFECYLDDSSVSRIFLVFEYVPNGTLRSWISE 569

Query: 120 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 179
             + Q+L W QRI+AAIGVA+GIQFLHTGI+PGV+S NLKITD+LLDQNLVAKI SYNLP
Sbjct: 570 KRSRQTLNWAQRIAAAIGVAKGIQFLHTGILPGVYSKNLKITDVLLDQNLVAKICSYNLP 629

Query: 180 LLAENAEKVGHVTPYSGSINPTNSAR 205
           LLAENA K+GH     GS +P   AR
Sbjct: 630 LLAENAGKIGHGVSSGGSTDPITVAR 655

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123880|ref|XP_002319187.1| predicted protein [Populus trichocarpa] gi|222857563|gb|EEE95110.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (884), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 168/206 (81%), Positives = 182/206 (88%), Gaps = 1/206 (0%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGS+GQ+YRGRLK+G+F+ IRCLKMK+
Sbjct: 450 MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSQGQIYRGRLKDGSFVVIRCLKMKR 509

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS- 119
           SH T NFMHHIELISKLRH HLVSALGH FE Y DDSSVSRIFL+FEYVPNGTLRSWIS 
Sbjct: 510 SHGTHNFMHHIELISKLRHRHLVSALGHGFEYYLDDSSVSRIFLVFEYVPNGTLRSWISG 569

Query: 120 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 179
           GHA Q + WT RI+AAIGVA+GIQFLHTGIVPGV+SNNLKITD+LLDQNLVAKISSYNLP
Sbjct: 570 GHARQKIHWTHRIAAAIGVAKGIQFLHTGIVPGVYSNNLKITDVLLDQNLVAKISSYNLP 629

Query: 180 LLAENAEKVGHVTPYSGSINPTNSAR 205
           LLAEN   VGH      S + + SAR
Sbjct: 630 LLAENRGMVGHGASSGASKDLSLSAR 655

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439195|ref|XP_002269509.1| PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Vitis vinifera] gi|296085894|emb|CBI31218.3| unnamed protein product [Vitis vinifera]

 Score =  342 bits (878), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 162/189 (85%), Positives = 178/189 (94%), Gaps = 1/189 (0%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           M LGALGLPAYRTFSLEELEEATNNFDTS FMGEGS+GQMYRG+LK+G+ +AIRCLKMKK
Sbjct: 452 MNLGALGLPAYRTFSLEELEEATNNFDTSTFMGEGSQGQMYRGKLKDGSLVAIRCLKMKK 511

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS- 119
           SHST+NFMHHIELI KLRH HLVS+LGHCFECY DD+SVSRIFLIFEYVPNGTLRSWIS 
Sbjct: 512 SHSTQNFMHHIELILKLRHRHLVSSLGHCFECYLDDASVSRIFLIFEYVPNGTLRSWISE 571

Query: 120 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 179
           G + Q+L+WTQRI+AAIGVA+GI+FLHTGI+PGV+SNNLKITDILLDQNLVAKISSYNLP
Sbjct: 572 GRSRQTLSWTQRIAAAIGVAKGIEFLHTGILPGVYSNNLKITDILLDQNLVAKISSYNLP 631

Query: 180 LLAENAEKV 188
           LLAEN  KV
Sbjct: 632 LLAENMGKV 640

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854936|emb|CAN80270.1| hypothetical protein VITISV_020032 [Vitis vinifera]

 Score =  341 bits (875), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 162/189 (85%), Positives = 178/189 (94%), Gaps = 1/189 (0%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           M LGALGLPAYRTFSLEELEEATNNFDTS FMGEGS+GQMYRG+LK+G+ +AIRCLKMKK
Sbjct: 412 MNLGALGLPAYRTFSLEELEEATNNFDTSTFMGEGSQGQMYRGKLKDGSLVAIRCLKMKK 471

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS- 119
           SHST+NFMHHIELI KLRH HLVS+LGHCFECY DD+SVSRIFLIFEYVPNGTLRSWIS 
Sbjct: 472 SHSTQNFMHHIELILKLRHRHLVSSLGHCFECYLDDASVSRIFLIFEYVPNGTLRSWISE 531

Query: 120 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 179
           G + Q+L+WTQRI+AAIGVA+GI+FLHTGI+PGV+SNNLKITDILLDQNLVAKISSYNLP
Sbjct: 532 GRSRQTLSWTQRIAAAIGVAKGIEFLHTGILPGVYSNNLKITDILLDQNLVAKISSYNLP 591

Query: 180 LLAENAEKV 188
           LLAEN  KV
Sbjct: 592 LLAENMGKV 600

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833056|ref|XP_002884410.1| hypothetical protein ARALYDRAFT_477625 [Arabidopsis lyrata subsp. lyrata] gi|297330250|gb|EFH60669.1| hypothetical protein ARALYDRAFT_477625 [Arabidopsis lyrata subsp. lyrata]

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 156/197 (79%), Positives = 172/197 (87%), Gaps = 1/197 (0%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           MKLGALGLPAYRTFSLEELE ATNNF++SAFMGEGS+GQ+YRGRLK+G+F+AIRCLKMKK
Sbjct: 452 MKLGALGLPAYRTFSLEELEYATNNFESSAFMGEGSQGQIYRGRLKDGSFVAIRCLKMKK 511

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS- 119
           S ST+N MHHIELI+KLRH HLVS LGHCFECY DDS+VSR+F +FEYVPNG LRSWIS 
Sbjct: 512 SCSTQNLMHHIELIAKLRHRHLVSVLGHCFECYLDDSTVSRMFFVFEYVPNGELRSWISD 571

Query: 120 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 179
           GH  + LTW QRIS AIGVA+GIQFLHTGIVPGV+ NNLKITDILLD NL AK+SSYNLP
Sbjct: 572 GHMGRLLTWEQRISVAIGVAKGIQFLHTGIVPGVYDNNLKITDILLDNNLAAKVSSYNLP 631

Query: 180 LLAENAEKVGHVTPYSG 196
           LL E   KVG V   SG
Sbjct: 632 LLVEGLGKVGQVGSRSG 648

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396660|ref|NP_566213.1| leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] gi|334185060|ref|NP_001189801.1| leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] gi|75155911|sp|Q8LFN2.1|Y3037_ARATH RecName: Full=Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770; Flags: Precursor gi|21536973|gb|AAM61314.1| unknown [Arabidopsis thaliana] gi|224589557|gb|ACN59312.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gi|332640463|gb|AEE73984.1| leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] gi|332640464|gb|AEE73985.1| leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 153/197 (77%), Positives = 171/197 (86%), Gaps = 1/197 (0%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           MKLG LGLPAYRTFSLEELE ATNNF++SAFMGEGS+GQ+YRGRLK+G+F+AIRCLKMKK
Sbjct: 452 MKLGGLGLPAYRTFSLEELEYATNNFESSAFMGEGSQGQIYRGRLKDGSFVAIRCLKMKK 511

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS- 119
           S ST+N MHHIELI+KLRH HLVS LGHCFECY DDS+VSR+F +FEYVPNG LR+WIS 
Sbjct: 512 SCSTQNLMHHIELIAKLRHRHLVSVLGHCFECYLDDSTVSRMFFVFEYVPNGELRTWISD 571

Query: 120 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 179
           GH  + LTW QRIS AIGVA+GIQFLHTGIVPGV+ NNLK+TDILLD NL AK+SSYNLP
Sbjct: 572 GHMGRLLTWEQRISVAIGVAKGIQFLHTGIVPGVYDNNLKMTDILLDNNLAAKLSSYNLP 631

Query: 180 LLAENAEKVGHVTPYSG 196
           LL E   KVG V   SG
Sbjct: 632 LLVEGLGKVGQVGSRSG 648

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27311539|gb|AAO00735.1| expressed protein [Arabidopsis thaliana]

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 148/189 (78%), Positives = 167/189 (88%), Gaps = 1/189 (0%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           MKLG LGLPAYRTFSLEELE ATNNF++SAFMGEGS+GQ+YRGRLK+G+F+AIRCLKMKK
Sbjct: 452 MKLGGLGLPAYRTFSLEELEYATNNFESSAFMGEGSQGQIYRGRLKDGSFVAIRCLKMKK 511

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS- 119
           S ST+N MHHIELI+KLRH HLVS LGHCFECY DDS+VSR+F +FEYVP+G LR+WIS 
Sbjct: 512 SCSTQNLMHHIELIAKLRHRHLVSVLGHCFECYLDDSTVSRMFFVFEYVPDGELRTWISD 571

Query: 120 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 179
           GH  + LTW QRIS AIGVA+GIQFLHTGIVPGV+ NNLK+TDILLD NL AK+SSYNLP
Sbjct: 572 GHMGRLLTWEQRISVAIGVAKGIQFLHTGIVPGVYDNNLKMTDILLDNNLAAKLSSYNLP 631

Query: 180 LLAENAEKV 188
           LL E   KV
Sbjct: 632 LLVEGLGKV 640

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6006864|gb|AAF00640.1|AC009540_17 hypothetical protein [Arabidopsis thaliana]

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 148/189 (78%), Positives = 167/189 (88%), Gaps = 1/189 (0%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           MKLG LGLPAYRTFSLEELE ATNNF++SAFMGEGS+GQ+YRGRLK+G+F+AIRCLKMKK
Sbjct: 452 MKLGGLGLPAYRTFSLEELEYATNNFESSAFMGEGSQGQIYRGRLKDGSFVAIRCLKMKK 511

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS- 119
           S ST+N MHHIELI+KLRH HLVS LGHCFECY DDS+VSR+F +FEYVPNG LR+WIS 
Sbjct: 512 SCSTQNLMHHIELIAKLRHRHLVSVLGHCFECYLDDSTVSRMFFVFEYVPNGELRTWISD 571

Query: 120 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 179
           GH  + LTW QRIS AIGVA+GIQFLHTGIVPGV+ NNLK+TDILLD NL AK+SSYNLP
Sbjct: 572 GHMGRLLTWEQRISVAIGVAKGIQFLHTGIVPGVYDNNLKMTDILLDNNLAAKLSSYNLP 631

Query: 180 LLAENAEKV 188
           LL E   K+
Sbjct: 632 LLVEGLGKL 640

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508805|ref|XP_003624691.1| hypothetical protein MTR_7g086420 [Medicago truncatula] gi|87162732|gb|ABD28527.1| Protein kinase [Medicago truncatula] gi|355499706|gb|AES80909.1| hypothetical protein MTR_7g086420 [Medicago truncatula]

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/182 (77%), Positives = 162/182 (89%), Gaps = 1/182 (0%)

Query: 2   KLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS 61
           K GALGLP YR+FSLEE+E ATNNFDT++ MGE S G+MYRG+LKNG+ + IRC+KMKK 
Sbjct: 444 KFGALGLPTYRSFSLEEIEAATNNFDTASLMGEDSYGEMYRGQLKNGSIVVIRCIKMKKR 503

Query: 62  HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS-G 120
           +ST+NFMHH+ELISKLRH HLVSALGHCF+C  +DSSVS+IFL+FEYVPNGTLRSW S G
Sbjct: 504 YSTQNFMHHMELISKLRHRHLVSALGHCFKCSLEDSSVSKIFLVFEYVPNGTLRSWTSDG 563

Query: 121 HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL 180
           H  +SL WTQRI AAIGVA+GIQFLHTGIVPGV+SNN+KI DILLD NLVAKISSYNLPL
Sbjct: 564 HTGRSLNWTQRIGAAIGVAKGIQFLHTGIVPGVYSNNIKIEDILLDHNLVAKISSYNLPL 623

Query: 181 LA 182
           L+
Sbjct: 624 LS 625

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2079339	802	AT3G03770 [Arabidopsis thalian	0.956	0.244	0.776	9.7e-80
TAIR|locus:2167326	680	AT5G63410 [Arabidopsis thalian	0.887	0.267	0.464	2.9e-43
TAIR|locus:2050080	871	AT2G21480 [Arabidopsis thalian	0.804	0.189	0.413	2.1e-31
TAIR|locus:2151349	855	THE1 "THESEUS1" [Arabidopsis t	0.868	0.208	0.390	1.1e-30
TAIR|locus:2136338	878	AT4G39110 [Arabidopsis thalian	0.8	0.186	0.410	1.5e-30
TAIR|locus:2204564	849	HERK2 "hercules receptor kinas	0.868	0.209	0.406	6.3e-30
TAIR|locus:2152312	880	AT5G38990 [Arabidopsis thalian	0.882	0.205	0.365	3e-29
TAIR|locus:2062824	565	NCRK [Arabidopsis thaliana (ta	0.878	0.318	0.378	3.6e-29
TAIR|locus:2178707	824	AT5G24010 [Arabidopsis thalian	0.785	0.195	0.388	5.1e-29
TAIR|locus:2177202	873	AT5G39000 [Arabidopsis thalian	0.882	0.207	0.365	1.3e-28

TAIR|locus:2079339 AT3G03770 [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 153/197 (77%), Positives = 171/197 (86%)

Query:     1 MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
             MKLG LGLPAYRTFSLEELE ATNNF++SAFMGEGS+GQ+YRGRLK+G+F+AIRCLKMKK
Sbjct:   452 MKLGGLGLPAYRTFSLEELEYATNNFESSAFMGEGSQGQIYRGRLKDGSFVAIRCLKMKK 511

Query:    61 SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS- 119
             S ST+N MHHIELI+KLRH HLVS LGHCFECY DDS+VSR+F +FEYVPNG LR+WIS 
Sbjct:   512 SCSTQNLMHHIELIAKLRHRHLVSVLGHCFECYLDDSTVSRMFFVFEYVPNGELRTWISD 571

Query:   120 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 179
             GH  + LTW QRIS AIGVA+GIQFLHTGIVPGV+ NNLK+TDILLD NL AK+SSYNLP
Sbjct:   572 GHMGRLLTWEQRISVAIGVAKGIQFLHTGIVPGVYDNNLKMTDILLDNNLAAKLSSYNLP 631

Query:   180 LLAENAEKVGHVTPYSG 196
             LL E   KVG V   SG
Sbjct:   632 LLVEGLGKVGQVGSRSG 648

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2167326 AT5G63410 [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 2.9e-43, P = 2.9e-43
 Identities = 86/185 (46%), Positives = 128/185 (69%)

Query:     2 KLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSK-GQMYRGRLKNGTFIAIRCLKMKK 60
             K G+  LP  R FSLEE+ +AT NFD +  +GE S  G +Y+G L+NGT +AIRCL   K
Sbjct:   378 KFGSEDLPVCRQFSLEEIVKATKNFDKTMILGESSLYGTLYKGNLENGTKVAIRCLPSSK 437

Query:    61 SHSTRNFMHHIELISKLRHCHLVSALGHCFECYF-DDSSVSRIFLIFEYVPNGTLRSWIS 119
              +S RN    ++L++KLRH +LV  LGHC +C   DD SV ++FLI+EY+PNG  +S +S
Sbjct:   438 KYSIRNLKLRLDLLAKLRHPNLVCLLGHCIDCGGKDDYSVEKVFLIYEYIPNGNFQSCLS 497

Query:   120 GHA-WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
              ++  + + W++R++   GVA+ + FLHTG++PG FSN LK  ++LL+Q+  AK+S Y L
Sbjct:   498 DNSSGKGMNWSERLNVLTGVAKAVHFLHTGVIPGFFSNRLKTNNVLLNQHRFAKLSDYGL 557

Query:   179 PLLAE 183
              +++E
Sbjct:   558 SIVSE 562

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2050080 AT2G21480 [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
 Identities = 72/174 (41%), Positives = 104/174 (59%)

Query:     5 ALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST 64
             ALGL  Y  FSL EL+E T NFD S  +G G  G +Y G + +GT +AI+    +     
Sbjct:   506 ALGLGRY--FSLSELQEVTKNFDASEIIGVGGFGNVYIGTIDDGTQVAIKRGNPQSEQGI 563

Query:    65 RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQ 124
               F   I+++SKLRH HLVS +G+C     D+++   + L++EY+ NG  R  + G    
Sbjct:   564 TEFHTEIQMLSKLRHRHLVSLIGYC-----DENA--EMILVYEYMSNGPFRDHLYGKNLS 616

Query:   125 SLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
              LTW QR+   IG ARG+ +LHTG   G+   ++K T+ILLD+ LVAK++ + L
Sbjct:   617 PLTWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKSTNILLDEALVAKVADFGL 670

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2151349 THE1 "THESEUS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 73/187 (39%), Positives = 112/187 (59%)

Query:    12 RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHI 71
             R F  +E+ +ATN FD S+ +G G  G++Y+G L++GT +A++    +       F   I
Sbjct:   496 RCFMFQEIMDATNKFDESSLLGVGGFGRVYKGTLEDGTKVAVKRGNPRSEQGMAEFRTEI 555

Query:    72 ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQR 131
             E++SKLRH HLVS +G+C     D+ S   + L++EY+ NG LRS + G     L+W QR
Sbjct:   556 EMLSKLRHRHLVSLIGYC-----DERS--EMILVYEYMANGPLRSHLYGADLPPLSWKQR 608

Query:   132 ISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV 191
             +   IG ARG+ +LHTG    +   ++K T+ILLD+NLVAK++ + L     + ++  HV
Sbjct:   609 LEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDENLVAKVADFGLSKTGPSLDQT-HV 667

Query:   192 -TPYSGS 197
              T   GS
Sbjct:   668 STAVKGS 674

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI

GO:0009791 "post-embryonic development" evidence=IGI

GO:0051510 "regulation of unidimensional cell growth" evidence=IGI;RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=IGI

GO:0009826 "unidimensional cell growth" evidence=IGI

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2136338 AT4G39110 [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
 Identities = 71/173 (41%), Positives = 104/173 (60%)

Query:     6 LGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTR 65
             LGL  Y  FSL EL+EAT NF+ S  +G G  G +Y G L +GT +A++    +      
Sbjct:   508 LGLGRY--FSLSELQEATKNFEASQIIGVGGFGNVYIGTLDDGTKVAVKRGNPQSEQGIT 565

Query:    66 NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQS 125
              F   I+++SKLRH HLVS +G+C     D++S   + L++E++ NG  R  + G     
Sbjct:   566 EFQTEIQMLSKLRHRHLVSLIGYC-----DENS--EMILVYEFMSNGPFRDHLYGKNLAP 618

Query:   126 LTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
             LTW QR+   IG ARG+ +LHTG   G+   ++K T+ILLD+ LVAK++ + L
Sbjct:   619 LTWKQRLEICIGSARGLHYLHTGTAQGIIHRDVKSTNILLDEALVAKVADFGL 671

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2204564 HERK2 "hercules receptor kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 6.3e-30, P = 6.3e-30
 Identities = 76/187 (40%), Positives = 108/187 (57%)

Query:    12 RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHI 71
             R F+L E+  AT NFD    +G G  G++YRG L++GT IAI+            F   I
Sbjct:   506 RKFTLAEIRAATKNFDDGLAIGVGGFGKVYRGELEDGTLIAIKRATPHSQQGLAEFETEI 565

Query:    72 ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQR 131
              ++S+LRH HLVS +G C     D+ +   + L++EY+ NGTLRS + G     L+W QR
Sbjct:   566 VMLSRLRHRHLVSLIGFC-----DEHN--EMILVYEYMANGTLRSHLFGSNLPPLSWKQR 618

Query:   132 ISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV 191
             + A IG ARG+ +LHTG   G+   ++K T+ILLD+N VAK+S + L     + +   HV
Sbjct:   619 LEACIGSARGLHYLHTGSERGIIHRDVKTTNILLDENFVAKMSDFGLSKAGPSMDHT-HV 677

Query:   192 -TPYSGS 197
              T   GS
Sbjct:   678 STAVKGS 684

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009741 "response to brassinosteroid stimulus" evidence=IGI

GO:0009826 "unidimensional cell growth" evidence=IGI

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2152312 AT5G38990 [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 3.0e-29, P = 3.0e-29
 Identities = 71/194 (36%), Positives = 116/194 (59%)

Query:     5 ALGLPA--YRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNG-TFIAIRCLKMKKS 61
             A  LP+   R FS+ E++ ATN+F+    +G G  G +Y+GR+  G T +A++ L++  +
Sbjct:   502 ASSLPSDLCRRFSIYEIKSATNDFEEKLIIGVGGFGSVYKGRIDGGATLVAVKRLEITSN 561

Query:    62 HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH 121
                + F   +E++SKLRH HLVS +G+C     DD +   + L++EY+P+GTL+  +   
Sbjct:   562 QGAKEFDTELEMLSKLRHVHLVSLIGYC-----DDDN--EMVLVYEYMPHGTLKDHLFRR 614

Query:   122 AWQS---LTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
                S   L+W +R+   IG ARG+Q+LHTG    +   ++K T+ILLD+N VAK+S + L
Sbjct:   615 DKASDPPLSWKRRLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVAKVSDFGL 674

Query:   179 PLLAENAEKVGHVT 192
               +   +    HV+
Sbjct:   675 SRVGPTSASQTHVS 688

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2062824 NCRK [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 3.6e-29, P = 3.6e-29
 Identities = 70/185 (37%), Positives = 108/185 (58%)

Query:    14 FSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRN-FMHHIE 72
             FS  ELE+ATN F +++ +G G    +YRG+LK+G   AI+ L   K   T   F   +E
Sbjct:   198 FSYTELEQATNKFSSNSVIGHGGSSCVYRGQLKDGKTAAIKRLNTPKGDDTDTLFSTEVE 257

Query:    73 LISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRI 132
             L+S+L H H+V  +G+C E  F      R+ L+FEY+  G+LR  + G   + +TW  RI
Sbjct:   258 LLSRLHHYHVVPLIGYCSE--FHGKHAERL-LVFEYMSYGSLRDCLDGELGEKMTWNIRI 314

Query:   133 SAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP-LLAENAEKVGHV 191
             S A+G ARG+++LH    P +   ++K T+ILLD+N  AKI+   +   L+ +  + G  
Sbjct:   315 SVALGAARGLEYLHEAAAPRILHRDVKSTNILLDENWHAKITDLGMAKCLSSDGLQSGSS 374

Query:   192 TPYSG 196
             +P +G
Sbjct:   375 SPTTG 379

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0010008 "endosome membrane" evidence=IDA

GO:0010089 "xylem development" evidence=RCA;IDA

GO:0012505 "endomembrane system" evidence=IDA

GO:0051020 "GTPase binding" evidence=IPI

GO:0007155 "cell adhesion" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2178707 AT5G24010 [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 5.1e-29, Sum P(2) = 5.1e-29
 Identities = 66/170 (38%), Positives = 97/170 (57%)

Query:    11 YRTF--SLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFM 68
             Y T   S  EL+  TNNFD S  +G G  G ++RG LK+ T +A++            F+
Sbjct:   472 YHTLRISFAELQSGTNNFDRSLVIGVGGFGMVFRGSLKDNTKVAVKRGSPGSRQGLPEFL 531

Query:    69 HHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTW 128
               I ++SK+RH HLVS +G+C E        S + L++EY+  G L+S + G     L+W
Sbjct:   532 SEITILSKIRHRHLVSLVGYCEE-------QSEMILVYEYMDKGPLKSHLYGSTNPPLSW 584

Query:   129 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
              QR+   IG ARG+ +LHTG   G+   ++K T+ILLD N VAK++ + L
Sbjct:   585 KQRLEVCIGAARGLHYLHTGSSQGIIHRDIKSTNILLDNNYVAKVADFGL 634

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2177202 AT5G39000 [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.3e-28, P = 1.3e-28
 Identities = 71/194 (36%), Positives = 115/194 (59%)

Query:     5 ALGLPA--YRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNG-TFIAIRCLKMKKS 61
             A  LPA   R FS+ E++ ATN+F+    +G G  G +Y+G++  G T +A++ L++  +
Sbjct:   495 AKSLPADLCRRFSIFEIKSATNDFEDKLIIGVGGFGSVYKGQIDGGATLVAVKRLEITSN 554

Query:    62 HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH 121
                + F   +E++SKLRH HLVS +G+C E   D+  V    L++EY+P+GTL+  +   
Sbjct:   555 QGAKEFETELEMLSKLRHVHLVSLIGYCDE---DNEMV----LVYEYMPHGTLKDHLFRR 607

Query:   122 AWQS---LTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
                S   L+W +R+   IG ARG+Q+LHTG    +   ++K T+ILLD+N V K+S + L
Sbjct:   608 DKTSDPPLSWKRRLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVTKVSDFGL 667

Query:   179 PLLAENAEKVGHVT 192
               +   +    HV+
Sbjct:   668 SRVGPTSASQTHVS 681

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LFN2	Y3037_ARATH	No assigned EC number	0.7766	0.9560	0.2443	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	8e-16
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-15
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	5e-15
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	2e-14
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	2e-14
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	6e-13
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	5e-11
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	8e-11
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	5e-10
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	8e-10
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	8e-09
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	1e-08
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	1e-08
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	2e-08
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	2e-08
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	3e-08
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	4e-08
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	8e-08
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	9e-08
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	1e-07
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	3e-07
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	3e-07
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	3e-07
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	5e-07
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	6e-07
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	1e-06
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	1e-06
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	1e-06
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	1e-06
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	1e-06
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	2e-06
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	3e-06
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	3e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-06
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	5e-06
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	7e-06
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	7e-06
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	9e-06
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	1e-05
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	1e-05
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	1e-05
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	1e-05
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	2e-05
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	2e-05
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	3e-05
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	4e-05
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	1e-04
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	2e-04
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	2e-04
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	2e-04
cd05086	268	cd05086, PTKc_Aatyk2, Catalytic domain of the Prot	3e-04
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	3e-04
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	4e-04
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	4e-04
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	4e-04
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	5e-04
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	6e-04
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	6e-04
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	6e-04
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	7e-04
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	8e-04
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	0.001
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	0.001
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	0.001
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	0.001
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	0.001
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	0.002
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	0.002
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	0.002
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	0.002
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	0.004

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 73.0 bits (180), Expect = 8e-16
 Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 26/153 (16%)

Query: 33  GEGSKGQMYRGRLKNG-----TFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSAL 86
           GEG+ G++Y+G LK         +A++ LK   S      F+    ++ KL H ++V  L
Sbjct: 8   GEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIVKLL 67

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
           G C       +    + ++ EY+P G L  ++  +  + L+ +  +S A+ +ARG+++L 
Sbjct: 68  GVC-------TEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLE 120

Query: 147 TGIVPGVFSNN-----LKITDILLDQNLVAKIS 174
                   S N     L   + L+ +NLV KIS
Sbjct: 121 --------SKNFIHRDLAARNCLVGENLVVKIS 145

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 72.2 bits (178), Expect = 2e-15
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 34/160 (21%)

Query: 33  GEGSKGQMYRGRLKNG----TFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALG 87
           GEG+ G++Y+G+LK      T +A++ LK   S   R +F+    ++ KL H ++V  LG
Sbjct: 4   GEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLG 63

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAW-------QSLTWTQRISAAIGVAR 140
            C E          ++L+ EY+  G L  ++             +L+    +S AI +A+
Sbjct: 64  VCTE-------EEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAK 116

Query: 141 GIQFLHT-GIVPGVFSNNLKITD-----ILLDQNLVAKIS 174
           G+++L +   V           D      L+ ++LV KIS
Sbjct: 117 GMEYLASKKFVHR---------DLAARNCLVGEDLVVKIS 147

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 70.3 bits (173), Expect = 5e-15
 Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 16/150 (10%)

Query: 33  GEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHH-IELISKLRHCHLVSALGHCF 90
           GEG  G +Y  R K  G  +AI+ +K + S S    +   IE++ KL H ++V      +
Sbjct: 2   GEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIV----KLY 57

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH-TGI 149
             + D++    ++L+ EY   G+L+  +  +    L+  + +   + +  G+++LH  GI
Sbjct: 58  GVFEDEN---HLYLVMEYCEGGSLKDLLKENE-GKLSEDEILRILLQILEGLEYLHSNGI 113

Query: 150 VPGVFSNNLKITDILLDQ-NLVAKISSYNL 178
           +      +LK  +ILLD  N   K++ + L
Sbjct: 114 IHR----DLKPENILLDSDNGKVKLADFGL 139

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 69.5 bits (171), Expect = 2e-14
 Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 27/153 (17%)

Query: 33  GEGSKGQMYRGRLKNGTF-----IAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSAL 86
           GEG+ G++Y+G+LK         +A++ LK   S      F+    ++ KL H ++V  L
Sbjct: 8   GEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVKLL 67

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
           G C       +    ++++ EY+  G L S++  +    L+ +  +S A+ +ARG+++L 
Sbjct: 68  GVC-------TEEEPLYIVMEYMEGGDLLSYLRKNR-PKLSLSDLLSFALQIARGMEYLE 119

Query: 147 TGIVPGVFSNN-----LKITDILLDQNLVAKIS 174
                   S N     L   + L+ +NLV KIS
Sbjct: 120 --------SKNFIHRDLAARNCLVGENLVVKIS 144

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 69.1 bits (170), Expect = 2e-14
 Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 27/153 (17%)

Query: 33  GEGSKGQMYRGRLK-----NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           GEG+ G++Y+G LK       T +A++ LK   S   R  F+    ++ KL H ++V  L
Sbjct: 8   GEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVRLL 67

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
           G C +    +     ++++ EY+P G L  ++  H  + LT    +  A+ +A+G+++L 
Sbjct: 68  GVCTQ---GEP----LYIVTEYMPGGDLLDFLRKHG-EKLTLKDLLQMALQIAKGMEYLE 119

Query: 147 TGIVPGVFSNNLKITD-----ILLDQNLVAKIS 174
                   S N    D      L+ +NLV KIS
Sbjct: 120 --------SKNFVHRDLAARNCLVTENLVVKIS 144

Length = 258

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 65.4 bits (160), Expect = 6e-13
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 25/151 (16%)

Query: 32  MGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHH--IELISKLRHCHLVSALGH 88
           +G GS G +Y+ + K  G  +A++ LK +   S ++      I ++ +L H ++V     
Sbjct: 7   LGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIV----- 61

Query: 89  CFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTG 148
                F+D     ++L+ EY   G L  ++S      L+  +    A+ + RG+++LH  
Sbjct: 62  RLIDAFEDKD--HLYLVMEYCEGGDLFDYLSRG--GPLSEDEAKKIALQILRGLEYLH-- 115

Query: 149 IVPGVFSNN-----LKITDILLDQNLVAKIS 174
                 SN      LK  +ILLD+N V KI+
Sbjct: 116 ------SNGIIHRDLKPENILLDENGVVKIA 140

Length = 260

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 59.7 bits (144), Expect = 5e-11
 Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 12/155 (7%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 14  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 65

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
             +   S   I+++ EY+  G+L  ++ G   + L   Q +  A  +A G+ ++      
Sbjct: 66  -LYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVER---M 121

Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 122 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 156

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 59.1 bits (144), Expect = 8e-11
 Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 26/150 (17%)

Query: 33  GEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCF 90
           GEGS G++Y  R K  G  +AI+ +K KK    R   +  I+++ KL+H ++V      +
Sbjct: 8   GEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIV----RLY 63

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT-GI 149
           + + D+     ++L+ EY   G L   +      S    +     I     +++LH+ GI
Sbjct: 64  DVFEDEDK---LYLVMEYCEGGDLFDLLKKRGRLSEDEARFYLRQI--LSALEYLHSKGI 118

Query: 150 V-----PGVFSNNLKITDILLDQNLVAKIS 174
           V     P    N      ILLD++   K++
Sbjct: 119 VHRDLKP---EN------ILLDEDGHVKLA 139

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 56.8 bits (138), Expect = 5e-10
 Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 15/146 (10%)

Query: 33  GEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCHLVSALGHC 89
           G GS G +Y    K  G  +A++ +++              I ++S L+H ++V   G  
Sbjct: 9   GRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSE 68

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT-G 148
            +   ++ +   IFL  EYV  G+L S +    +  L           +  G+ +LH+ G
Sbjct: 69  RD---EEKNTLNIFL--EYVSGGSLSSLL--KKFGKLPEPVIRKYTRQILEGLAYLHSNG 121

Query: 149 IVPGVFSNNLKITDILLDQNLVAKIS 174
           IV      ++K  +IL+D + V K++
Sbjct: 122 IVHR----DIKGANILVDSDGVVKLA 143

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 56.3 bits (136), Expect = 8e-10
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G  KN   +AI+ LK       ++F   ++ + +LRH HL+S    C  
Sbjct: 14  LGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVC-- 71

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                S    +++I E +  G+L +++     Q L     I  A  VA G+ +L      
Sbjct: 72  -----SVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEE---Q 123

Query: 152 GVFSNNLKITDILLDQNLVAKISSYNL 178
                +L   +IL+ ++LV K++ + L
Sbjct: 124 NSIHRDLAARNILVGEDLVCKVADFGL 150

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 53.6 bits (129), Expect = 8e-09
 Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 31/168 (18%)

Query: 32  MGEGSKGQMYRGRL------KNGTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVS 84
           +GEG+ G++Y+G L       + T +AI+ LK       +  F    EL+S L+H ++V 
Sbjct: 13  LGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVC 72

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA--------------WQSLTWTQ 130
            LG C +    +       ++FEY+ +G L  ++  ++                SL  + 
Sbjct: 73  LLGVCTK----EQPTC---MLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSD 125

Query: 131 RISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
            +  AI +A G+++L +         +L   + L+ + L  KIS + L
Sbjct: 126 FLHIAIQIAAGMEYLSSH---HFVHRDLAARNCLVGEGLTVKISDFGL 170

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 18/172 (10%)

Query: 32  MGEGSKGQMYRGRL----KNGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           +G G  G++ RGRL    K    +AI+ LK   S   R +F+    ++ +  H +++   
Sbjct: 12  IGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLE 71

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
           G         +    + +I EY+ NG+L  ++  +  +  T  Q +    G+A G+++L 
Sbjct: 72  GVV-------TKSRPVMIITEYMENGSLDKFLRENDGK-FTVGQLVGMLRGIASGMKYLS 123

Query: 147 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSI 198
                     +L   +IL++ NLV K+S + L    E++E     T   G I
Sbjct: 124 E---MNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSE--ATYTTKGGKI 170

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 53.1 bits (127), Expect = 1e-08
 Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 12/155 (7%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   +     F+   +++ KLRH  LV        
Sbjct: 14  LGQGCFGEVWMGTWNGTTKVAIKTLK-PGTMMPEAFLQEAQIMKKLRHDKLVP------- 65

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
             +   S   I+++ E++  G+L  ++     + L   Q +  A  +A G+ ++      
Sbjct: 66  -LYAVVSEEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIER---M 121

Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+  NLV KI+ + L  L E+ E
Sbjct: 122 NYIHRDLRAANILVGDNLVCKIADFGLARLIEDNE 156

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 26/133 (19%)

Query: 32  MGEGSKGQMYRGRLKNG------TFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVS 84
           +GEG+ G+++ G   +         +A++ LK   S+  R +F    EL++  +H ++V 
Sbjct: 13  LGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVK 72

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH------------AWQSLTWTQRI 132
             G C E            ++FEY+ +G L  ++  H                LT +Q +
Sbjct: 73  FYGVCTEG-------DPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLL 125

Query: 133 SAAIGVARGIQFL 145
             A+ +A G+ +L
Sbjct: 126 QIAVQIASGMVYL 138

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 16/157 (10%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +A++ LK   + S  +F+   +++ KLRH  LV       +
Sbjct: 14  LGNGQFGEVWMGTWNGNTKVAVKTLK-PGTMSPESFLEEAQIMKKLRHDKLV-------Q 65

Query: 92  CYFDDSSVSR--IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGI 149
            Y   + VS   I+++ EY+  G+L  ++     ++L     +  A  VA G+ ++    
Sbjct: 66  LY---AVVSEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIER-- 120

Query: 150 VPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                  +L+  +IL+   LV KI+ + L  L E+ E
Sbjct: 121 -MNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNE 156

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 36/153 (23%), Positives = 71/153 (46%), Gaps = 15/153 (9%)

Query: 32  MGEGSKGQMYRGR---LKNGTF--IAIRCLK-MKKSHSTRNFMHHIELISKLRHCHLVSA 85
           +GEG  G++   R   L + T   +A++ L    +     +F   IE++  L H ++V  
Sbjct: 12  LGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKY 71

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFL 145
            G C     +      + LI EY+P+G+LR ++  H  Q +   + +  +  + +G+ +L
Sbjct: 72  KGVC-----EKPGGRSLRLIMEYLPSGSLRDYLQRHRDQ-INLKRLLLFSSQICKGMDYL 125

Query: 146 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
            +         +L   +IL++   + KIS + L
Sbjct: 126 GS---QRYIHRDLAARNILVESEDLVKISDFGL 155

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 16/157 (10%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCH 81
                 A +G+G  G +  G  +    +A++CLK     ST  + F+    +++ LRH +
Sbjct: 6   KELKLGATIGKGEFGDVMLGDYRGQK-VAVKCLK---DDSTAAQAFLAEASVMTTLRHPN 61

Query: 82  LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARG 141
           LV  LG         +    ++++ EY+  G+L  ++       +T  Q++  A+ V  G
Sbjct: 62  LVQLLGVVL----QGNP---LYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEG 114

Query: 142 IQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           +++L           +L   ++L+ ++LVAK+S + L
Sbjct: 115 MEYLEE---KNFVHRDLAARNVLVSEDLVAKVSDFGL 148

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 50.5 bits (121), Expect = 8e-08
 Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 22/179 (12%)

Query: 25  NFDTSAFMGEGSKGQMYR-GRLKNGTFIA-----IRCLKMKKSHSTRNFMHHIELISKLR 78
           +F     +G+GS G +Y+  RL +  F A     +  +  K+     N    I +++ + 
Sbjct: 1   DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVN---EIRILASVN 57

Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS-GHAWQSLTWTQRI-SAAI 136
           H +++      ++  F D   +++ ++ EY P G L   IS     + L   Q I    I
Sbjct: 58  HPNII-----SYKEAFLDG--NKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFI 110

Query: 137 GVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP-LLAENAEKVGHVTPY 194
            + RG+Q LH      +   +LK  +ILL  N + KI    +  +L +N  K    TP+
Sbjct: 111 QLLRGLQALHEQ---KILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKTQIGTPH 166

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 50.6 bits (121), Expect = 9e-08
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 16/157 (10%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +AI+ LK + S S   F+    L+ +L+H  LV        
Sbjct: 14  LGAGQFGEVWMGYYNGHTKVAIKSLK-QGSMSPEAFLAEANLMKQLQHPRLVRLY----- 67

Query: 92  CYFDDSSVSR--IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGI 149
                + V++  I++I EY+ NG+L  ++       LT  + I  A  +A G+ F+    
Sbjct: 68  -----AVVTQEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIE--- 119

Query: 150 VPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                  +L+  +IL+ + L  KI+ + L  L E+ E
Sbjct: 120 RKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNE 156

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 50.1 bits (119), Expect = 1e-07
 Identities = 37/164 (22%), Positives = 74/164 (45%), Gaps = 27/164 (16%)

Query: 32  MGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSA 85
           +GEG+ G+++     N         +A++ LK    ++ ++F    EL++ L+H H+V  
Sbjct: 13  LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKF 72

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQS-----------LTWTQRISA 134
            G C E          + ++FEY+ +G L  ++  H   +           LT +Q +  
Sbjct: 73  YGVCVEG-------DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHI 125

Query: 135 AIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           A  +A G+ +L +         +L   + L+ +NL+ KI  + +
Sbjct: 126 AQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKIGDFGM 166

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 25/150 (16%)

Query: 33  GEGSKGQMYRG-RLKNGTFIAIRCLKM--KKSHSTRNFMHHIELISKLRHCHLVSALGHC 89
           G G+ G +Y+G  L+ G F+AI+ + +   K  + ++ M  I+L+  L+H ++V  +G  
Sbjct: 9   GRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGS- 67

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWI--SGHAWQSLTWTQRISAAIGVA---RGIQF 144
                + S    I L  EY  NG+LR  I   G   +SL        A+ V    +G+ +
Sbjct: 68  ----IETSDSLYIIL--EYAENGSLRQIIKKFGPFPESL-------VAVYVYQVLQGLAY 114

Query: 145 LHTGIVPGVFSNNLKITDILLDQNLVAKIS 174
           LH     GV   ++K  +IL  ++ V K++
Sbjct: 115 LHE---QGVIHRDIKAANILTTKDGVVKLA 141

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 15/166 (9%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +A++ LK   + S   F+   +++ KLRH  LV     C  
Sbjct: 14  LGAGQFGEVWMGTWNGTTKVAVKTLK-PGTMSPEAFLQEAQIMKKLRHDKLVQLYAVC-- 70

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                S    I+++ EY+  G+L  ++     + L   Q +  A  +A G+ +L +    
Sbjct: 71  -----SEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLES---R 122

Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGS 197
                +L   +IL+ +NLV KI+ + L  L E+ E     T   G+
Sbjct: 123 NYIHRDLAARNILVGENLVCKIADFGLARLIEDDE----YTAREGA 164

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 16/166 (9%)

Query: 32  MGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           +G G  G++  GRLK        +AI+ LK   +   R +F+    ++ +  H +++   
Sbjct: 12  IGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLE 71

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
           G   +          + ++ EY+ NG+L +++  H  Q  T  Q +    G+A G+++L 
Sbjct: 72  GVVTKS-------KPVMIVTEYMENGSLDAFLRKHDGQ-FTVIQLVGMLRGIASGMKYLS 123

Query: 147 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 192
                G    +L   +IL++ NLV K+S + L  + E+  +  + T
Sbjct: 124 D---MGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTT 166

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 48.5 bits (115), Expect = 5e-07
 Identities = 34/155 (21%), Positives = 72/155 (46%), Gaps = 11/155 (7%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G   N T +A++ LK   + S + F+    L+  L+H  LV        
Sbjct: 14  LGAGQFGEVWMGYYNNSTKVAVKTLK-PGTMSVQAFLEEANLMKTLQHDKLV-------R 65

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
            Y   +    I++I EY+  G+L  ++       +   + I  +  +A G+ ++      
Sbjct: 66  LYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIER---K 122

Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  ++L+ ++L+ KI+ + L  + E+ E
Sbjct: 123 NYIHRDLRAANVLVSESLMCKIADFGLARVIEDNE 157

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 48.3 bits (116), Expect = 6e-07
 Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 21/157 (13%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTR-NFMHHI----ELISKL 77
           ++F     +GEGS   +   + K      AI+ L   K    +   + ++    E++++L
Sbjct: 1   DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILD--KRQLIKEKKVKYVKIEKEVLTRL 58

Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIG 137
                +  L + F+   D+ ++   + + EY PNG L  +I  +       T+  +A I 
Sbjct: 59  NGHPGIIKLYYTFQ---DEENL---YFVLEYAPNGELLQYIRKYGSLDEKCTRFYAAEIL 112

Query: 138 VARGIQFLHT-GIVPGVFSNNLKITDILLDQNLVAKI 173
           +A  +++LH+ GI+      +LK  +ILLD+++  KI
Sbjct: 113 LA--LEYLHSKGII----HRDLKPENILLDKDMHIKI 143

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 33/162 (20%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHST----RNFMHHIELISKLR 78
           N ++    +GEG+ G + + R K  G  +AI+  K K+S       +  +  ++++ +LR
Sbjct: 1   NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIK--KFKESEDDEDVKKTALREVKVLRQLR 58

Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTL------RSWISGHAWQSLTWTQRI 132
           H ++V+                R++L+FEYV    L         +   A +S  W Q +
Sbjct: 59  HENIVNLKEAF-------RRKGRLYLVFEYVERTLLELLEASPGGLPPDAVRSYIW-QLL 110

Query: 133 SAAIGVARGIQFLHT-GIVPGVFSNNLKITDILLDQNLVAKI 173
            A       I + H+  I+      ++K  +IL+ ++ V K+
Sbjct: 111 QA-------IAYCHSHNII----HRDIKPENILVSESGVLKL 141

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 33/145 (22%), Positives = 74/145 (51%), Gaps = 16/145 (11%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G+G  G++Y+ R  + G  +AI+ +K++        ++ I+++ K +H ++V   G    
Sbjct: 9   GKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYG---- 64

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISA-AIGVARGIQFLHT-GI 149
            Y        ++++ E+   G+L+  +     Q+LT +Q I+     + +G+++LH+ GI
Sbjct: 65  SYLKK---DELWIVMEFCSGGSLKD-LLKSTNQTLTESQ-IAYVCKELLKGLEYLHSNGI 119

Query: 150 VPGVFSNNLKITDILLDQNLVAKIS 174
           +      ++K  +ILL  +   K+ 
Sbjct: 120 IHR----DIKAANILLTSDGEVKLI 140

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 29/166 (17%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST----RNFMHHIELISKL-RHCHLVSAL 86
           +GEG+ GQ+ + R+K         +K  K +++    R+F   +E++ KL  H ++++ L
Sbjct: 15  IGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLL 74

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSW--------------ISGHAWQSLTWTQRI 132
           G C            ++L  EY P+G L  +              I+     +L+  Q +
Sbjct: 75  GAC-------EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLL 127

Query: 133 SAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
             A  VARG+ +L           +L   +IL+ +N VAKI+ + L
Sbjct: 128 HFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGL 170

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 29/166 (17%)

Query: 32  MGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSA 85
           +GEG+ G+++     N         +A++ LK     + ++F    EL++ L+H H+V  
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRF 72

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH-------------AWQSLTWTQRI 132
            G C E          + ++FEY+ +G L  ++  H             A   LT  Q +
Sbjct: 73  YGVCTEG-------RPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQML 125

Query: 133 SAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           + A  +A G+ +L +         +L   + L+ Q LV KI  + +
Sbjct: 126 AIASQIASGMVYLAS---LHFVHRDLATRNCLVGQGLVVKIGDFGM 168

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 17/153 (11%)

Query: 32  MGEGSKGQ--MYRGRLKN---GTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSA 85
           +GEG  G+  +Y     N   G  +A++ LK +      + +   I ++  L H ++V  
Sbjct: 12  LGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKY 71

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFL 145
            G C      +     + LI EYVP G+LR ++  H    L   Q +  A  +  G+ +L
Sbjct: 72  KGCC-----SEQGGKGLQLIMEYVPLGSLRDYLPKH---KLNLAQLLLFAQQICEGMAYL 123

Query: 146 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           H+         +L   ++LLD + + KI  + L
Sbjct: 124 HS---QHYIHRDLAARNVLLDNDRLVKIGDFGL 153

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 19/174 (10%)

Query: 32  MGEGSKGQMYRGRLK----NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSAL 86
           +G G  G++ RGRLK       F+AI+ LK   +    R+F+    ++ +  H +++   
Sbjct: 12  IGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLE 71

Query: 87  GHCFECYFDDSSVSR-IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFL 145
           G          + SR + +I E++ NG L S++  +  Q  T  Q +    G+A G+++L
Sbjct: 72  GVV--------TKSRPVMIITEFMENGALDSFLRQNDGQ-FTVIQLVGMLRGIAAGMKYL 122

Query: 146 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP-LLAENAEKVGHVTPYSGSI 198
                      +L   +IL++ NLV K+S + L   L ++     + +   G I
Sbjct: 123 SE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKI 173

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 31/167 (18%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST----RNFMHHIELISKL-RHCHLVSAL 86
           +GEG+ GQ+ R  +K         +KM K  ++    R+F   +E++ KL  H ++++ L
Sbjct: 10  IGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLL 69

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS---------------GHAWQSLTWTQR 131
           G C        +   +++  EY P G L  ++                G A  +LT  Q 
Sbjct: 70  GAC-------ENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTA-STLTSQQL 121

Query: 132 ISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           +  A  VA G+Q+L           +L   ++L+ +NL +KI+ + L
Sbjct: 122 LQFASDVATGMQYLSE---KQFIHRDLAARNVLVGENLASKIADFGL 165

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 23/149 (15%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNF----MHHIELISKLRHCHLVSALG 87
           GEG+ GQ+Y+ R  K G  +A++  K++  +    F    +  I+L+ KLRH ++V    
Sbjct: 8   GEGTYGQVYKARNKKTGELVALK--KIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKE 65

Query: 88  HCFECYFDDSSVSRIFLIFEYVP---NGTLRSWISGHAWQSLTWTQRISAAIGVARGIQF 144
                         I+++FEY+     G L            T +Q       +  G+Q+
Sbjct: 66  IVTSKGKGS-----IYMVFEYMDHDLTGLLD-----SPEVKFTESQIKCYMKQLLEGLQY 115

Query: 145 LHTGIVPGVFSNNLKITDILLDQNLVAKI 173
           LH+    G+   ++K ++IL++ + V K+
Sbjct: 116 LHSN---GILHRDIKGSNILINNDGVLKL 141

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 17/134 (12%)

Query: 34  EGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
            G KG  Y+G+ +KNG    ++  ++   +S  +    I  + KL+H ++V  +G C   
Sbjct: 700 RGKKGASYKGKSIKNGMQFVVK--EINDVNSIPS--SEIADMGKLQHPNIVKLIGLC--- 752

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG 152
                S    +LI EY+    L   +       L+W +R   AIG+A+ ++FLH    P 
Sbjct: 753 ----RSEKGAYLIHEYIEGKNLSEVLRN-----LSWERRRKIAIGIAKALRFLHCRCSPA 803

Query: 153 VFSNNLKITDILLD 166
           V   NL    I++D
Sbjct: 804 VVVGNLSPEKIIID 817

Length = 968

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 15/149 (10%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G   N T +A++ LK   +   ++F+   +++ KLRH  L+     C  
Sbjct: 14  LGAGQFGEVWEGLWNNTTPVAVKTLK-PGTMDPKDFLAEAQIMKKLRHPKLIQLYAVC-- 70

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFL--HTGI 149
                +    I+++ E +  G+L  ++ G A ++L   Q I  A  VA G+ +L     I
Sbjct: 71  -----TLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYI 125

Query: 150 VPGVFSNNLKITDILLDQNLVAKISSYNL 178
                  +L   ++L+ +N + K++ + L
Sbjct: 126 -----HRDLAARNVLVGENNICKVADFGL 149

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 37/164 (22%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLKN-GTFIAI-RCLKMKKSHSTRNF-MHHIELISKLRHC 80
             ++    +GEGS G + + + K  G  +AI + L+ +     +   M  I ++ +LRH 
Sbjct: 1   EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHE 60

Query: 81  HLVSALGHCFECYFDDSSVSRIFLIFEYV-----------PNGTLRSWISGHAWQSLTWT 129
           +LV+ +              R++L+FE+V           PNG   S +  + +Q     
Sbjct: 61  NLVNLIEVF-------RRKKRLYLVFEFVDHTVLDDLEKYPNGLDESRVRKYLFQ----- 108

Query: 130 QRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI 173
                   + RGI+F H+     +   ++K  +IL+ Q+ V K+
Sbjct: 109 --------ILRGIEFCHSH---NIIHRDIKPENILVSQSGVVKL 141

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 10/101 (9%)

Query: 18  ELEEATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISK 76
           E E   +       +G+G+ G +Y  R L     IAI+ +  + S   +     I L S 
Sbjct: 2   EYEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSY 61

Query: 77  LRHCHLVSALGHCFECYFDDSSVSRIFLIF-EYVPNGTLRS 116
           L+H ++V  LG          S +  F IF E VP G+L +
Sbjct: 62  LKHRNIVQYLGSD--------SENGFFKIFMEQVPGGSLSA 94

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 44.6 bits (105), Expect = 9e-06
 Identities = 33/147 (22%), Positives = 66/147 (44%), Gaps = 12/147 (8%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G ++ G       +AI+ ++ + + S  +F+   +++ KL H  LV   G C E
Sbjct: 12  IGSGQFGLVWLGYWLEKRKVAIKTIR-EGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTE 70

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                   S I L+FE++ +G L  ++        +    +   + V  G+ +L +    
Sbjct: 71  -------RSPICLVFEFMEHGCLSDYLRAQR-GKFSQETLLGMCLDVCEGMAYLESS--- 119

Query: 152 GVFSNNLKITDILLDQNLVAKISSYNL 178
            V   +L   + L+ +N V K+S + +
Sbjct: 120 NVIHRDLAARNCLVGENQVVKVSDFGM 146

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 18/154 (11%)

Query: 31  FMGEGSKGQMYRG-RLKNGTFIAIRCLKMKKSHST-----RNFMHHIELISKLRHCHLVS 84
            +G GS G +Y G  L +G F A++ + +     T     +     I L+SKL+H ++V 
Sbjct: 7   LLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQ 66

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQF 144
            LG        +     +++  E VP G+L   +    + S            +  G+++
Sbjct: 67  YLG-------TEREEDNLYIFLELVPGGSLAKLLK--KYGSFPEPVIRLYTRQILLGLEY 117

Query: 145 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           LH          ++K  +IL+D N V K++ + +
Sbjct: 118 LHDR---NTVHRDIKGANILVDTNGVVKLADFGM 148

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 38/165 (23%), Positives = 78/165 (47%), Gaps = 23/165 (13%)

Query: 32  MGEGSKGQMYRG-RLKNGTFIAIRCLKMKKSHSTRN----------FMHHIELISKLRHC 80
           +G+G+ G++Y    +  G  +A++ +++  + + R+              IE +  L H 
Sbjct: 9   IGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHL 68

Query: 81  HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVAR 140
           ++V  LG  FE   +  S   IFL  EYVP G++ S +  +        +  +    V  
Sbjct: 69  NIVQYLG--FETTEEYLS---IFL--EYVPGGSIGSCLRTYGRFEEQLVRFFTEQ--VLE 119

Query: 141 GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENA 185
           G+ +LH+    G+   +LK  ++L+D + + KIS + +   +++ 
Sbjct: 120 GLAYLHS---KGILHRDLKADNLLVDADGICKISDFGISKKSDDI 161

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 12/148 (8%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCF 90
           +G+G+ G +Y+G LK  T +A++  +        R F+   E++ +  H ++V  +G C 
Sbjct: 3   IGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCV 62

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 150
           +          I+++ E VP G+L +++     + LT  + +  ++  A G+++L +   
Sbjct: 63  QKQ-------PIYIVMELVPGGSLLTFLRKKKNR-LTVKKLLQMSLDAAAGMEYLES--- 111

Query: 151 PGVFSNNLKITDILLDQNLVAKISSYNL 178
                 +L   + L+ +N V KIS + +
Sbjct: 112 KNCIHRDLAARNCLVGENNVLKISDFGM 139

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 20/128 (15%)

Query: 31  FMGEGSKGQMYRGRLKN----GT---FIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHL 82
           F+G G+ G++Y G   +    G+    +A++ L+   +   +  F+    L+S   H ++
Sbjct: 2   FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNI 61

Query: 83  VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQS-----LTWTQRISAAIG 137
           V  LG C     ++      ++I E +  G L S++     +      LT  + +   + 
Sbjct: 62  VKLLGVCLL---NEP----QYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLD 114

Query: 138 VARGIQFL 145
           VA+G  +L
Sbjct: 115 VAKGCVYL 122

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 31/168 (18%)

Query: 31  FMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST----RNFMHHIELISKL-RHCHLVSA 85
            +GEG+ GQ+ + R+K         +K  K +++    R+F   +E++ KL  H ++++ 
Sbjct: 2   VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINL 61

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS---------------GHAWQSLTWTQ 130
           LG C            ++L  EY P+G L  ++                  A  +L+  Q
Sbjct: 62  LGAC-------EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA-STLSSQQ 113

Query: 131 RISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
            +  A  VARG+ +L           +L   +IL+ +N VAKI+ + L
Sbjct: 114 LLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGL 158

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 33/149 (22%), Positives = 69/149 (46%), Gaps = 12/149 (8%)

Query: 31  FMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHC 89
            +G+G+ G++++G LK+ T +A++  K       +  F+    ++ +  H ++V  +G C
Sbjct: 2   LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVC 61

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGI 149
                  +    I+++ E VP G   S++       L   Q +  A+  A G+ +L +  
Sbjct: 62  -------TQRQPIYIVMELVPGGDFLSFLRKKK-DELKTKQLVKFALDAAAGMAYLES-- 111

Query: 150 VPGVFSNNLKITDILLDQNLVAKISSYNL 178
                  +L   + L+ +N V KIS + +
Sbjct: 112 -KNCIHRDLAARNCLVGENNVLKISDFGM 139

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G ++ G+ +    +AI+ ++ + + S  +F+   +++ KL H +LV   G C  
Sbjct: 12  LGSGQFGVVHLGKWRGKIDVAIKMIR-EGAMSEDDFIEEAKVMMKLSHPNLVQLYGVC-- 68

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                +    IF++ EY+ NG L +++       L     +     V   +++L +    
Sbjct: 69  -----TKQRPIFIVTEYMANGCLLNYLRERK-GKLGTEWLLDMCSDVCEAMEYLESN--- 119

Query: 152 GVFSNNLKITDILLDQNLVAKISSYNL 178
           G    +L   + L+ ++ V K+S + L
Sbjct: 120 GFIHRDLAARNCLVGEDNVVKVSDFGL 146

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 42.7 bits (100), Expect = 4e-05
 Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 30/167 (17%)

Query: 32  MGEGSKGQMYRGR------LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSA 85
           +GEG+ G+++          K+   +A++ LK     + ++F    EL++ L+H H+V  
Sbjct: 13  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 72

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH--------------AWQSLTWTQR 131
            G C +          + ++FEY+ +G L  ++  H              A   L  +Q 
Sbjct: 73  YGVCGDG-------DPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQM 125

Query: 132 ISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           +  A  +A G+ +L +         +L   + L+  NL+ KI  + +
Sbjct: 126 LHIASQIASGMVYLAS---QHFVHRDLATRNCLVGANLLVKIGDFGM 169

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 22/152 (14%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G +  G+ +    +AI+ +K + S S   F+   +++ KL H  LV   G C  
Sbjct: 12  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMKLSHEKLVQLYGVC-- 68

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGH-----AWQSLTWTQRISAAIGVARGIQFLH 146
                +    I+++ EY+ NG L +++  H       Q L   + +   +      QF+H
Sbjct: 69  -----TKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIH 123

Query: 147 TGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
                     +L   + L+D     K+S + L
Sbjct: 124 ---------RDLAARNCLVDDQGCVKVSDFGL 146

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 34/159 (21%), Positives = 75/159 (47%), Gaps = 26/159 (16%)

Query: 31  FMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSALGHC 89
           F+GEG+     +  L     +A++ L+   + + RN F+  I+++S+L++ +++  LG C
Sbjct: 32  FLGEGAPEFDGQPVL-----VAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVC 86

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQS----------LTWTQRISAAIGVA 139
                DD     + +I EY+ NG L  ++S    +S          ++    +  A+ +A
Sbjct: 87  VS---DDP----LCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIA 139

Query: 140 RGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
            G+++L +         +L   + L+  +   KI+ + +
Sbjct: 140 SGMKYLAS---LNFVHRDLATRNCLVGNHYTIKIADFGM 175

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 37/166 (22%), Positives = 73/166 (43%), Gaps = 16/166 (9%)

Query: 32  MGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSAL 86
           +G G  G+++RG LK        +AI+ LK   +   R  F+    ++ +  H +++   
Sbjct: 13  IGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLE 72

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
           G         +      +I EY+ NG L  ++  H  +  +  Q +    G+A G+++L 
Sbjct: 73  GVV-------TKFKPAMIITEYMENGALDKYLRDHDGE-FSSYQLVGMLRGIAAGMKYLS 124

Query: 147 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 192
                     +L   +IL++ NL  K+S + L  + E+  +  + T
Sbjct: 125 D---MNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTT 167

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 25/133 (18%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH--STRNFMHHIEL-ISKLRH 79
           ++ +    +G+GS G +Y+ R K  G   A     +KK H      F   +   +  LR 
Sbjct: 1   SDLERVKVLGQGSSGVVYKVRHKPTGKIYA-----LKKIHVDGDEEFRKQLLRELKTLRS 55

Query: 80  C---HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAI 136
           C   ++V     C+  ++ +  +S   ++ EY+  G+L   +     +     + + A I
Sbjct: 56  CESPYVVK----CYGAFYKEGEIS---IVLEYMDGGSLADLLK----KVGKIPEPVLAYI 104

Query: 137 G--VARGIQFLHT 147
              + +G+ +LHT
Sbjct: 105 ARQILKGLDYLHT 117

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 28/159 (17%)

Query: 32  MGEGSKGQMYRGRLKNGTFIA---IRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSALG 87
           +G G  G++    +   T +A   ++ LK   S   +N F+   +    L+H +++  LG
Sbjct: 3   IGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLG 62

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQ----SLTWTQR----ISAAIGVA 139
            C E            L+FEY   G L+S++S   W      L   QR    I+A +   
Sbjct: 63  QCVEAI-------PYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHM 115

Query: 140 RGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
               FLH+         +L + +  L  +L  K+  Y +
Sbjct: 116 HKHNFLHS---------DLALRNCFLTSDLTVKVGDYGI 145

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage spermatogenesis. Although it is classified as a tyr kinase based on sequence similarity and the phylogenetic tree, Aatyk2 has been characterized as a serine/threonine kinase. Length = 268

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 39/176 (22%)

Query: 32  MGEGSKGQMYRG---RLKNG---TFIAIRCLKMKKSHST-RNFMHHIELISKLRHCHLVS 84
           +GEG  G++ +    RLK     T +A++ LK   S S  R+ +    L+ ++ H H++ 
Sbjct: 8   LGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIK 67

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI------------SGHAWQS------- 125
             G C       S    + LI EY   G+LRS++            S     S       
Sbjct: 68  LYGAC-------SQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPD 120

Query: 126 ---LTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
              LT    IS A  ++RG+Q+L       +   +L   ++L+ +    KIS + L
Sbjct: 121 ERALTMGDLISFAWQISRGMQYLAE---MKLVHRDLAARNVLVAEGRKMKISDFGL 173

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 32/149 (21%), Positives = 72/149 (48%), Gaps = 14/149 (9%)

Query: 30  AFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHC 89
             +GEG  G + +G    G  +A++ +K   +   + F+    +++KL H +LV  LG  
Sbjct: 12  EIIGEGEFGAVLQGEYT-GQKVAVKNIKCDVT--AQAFLEETAVMTKLHHKNLVRLLGVI 68

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGI 149
                     + ++++ E +  G L +++       ++  Q +  ++ VA G+++L +  
Sbjct: 69  LH--------NGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLES-- 118

Query: 150 VPGVFSNNLKITDILLDQNLVAKISSYNL 178
              +   +L   +IL+ ++ VAK+S + L
Sbjct: 119 -KKLVHRDLAARNILVSEDGVAKVSDFGL 146

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 29/152 (19%), Positives = 65/152 (42%), Gaps = 13/152 (8%)

Query: 25  NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRN-FMHHIELISKLRHCH 81
           +F+    +G+GS G +++   K +    A++ + + K +   R   +    +++KL   +
Sbjct: 1   DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSY 60

Query: 82  LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARG 141
           ++      +E + D     ++ ++ EY  NG L   +     + L   Q     I +  G
Sbjct: 61  IIRY----YESFLDKG---KLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLG 113

Query: 142 IQFLHTGIVPGVFSNNLKITDILLDQNLVAKI 173
           +  LH+     +   ++K  ++ LD     KI
Sbjct: 114 LAHLHSK---KILHRDIKSLNLFLDAYDNVKI 142

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 13/94 (13%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH------STRNFMHHIELISKLRHCHLVSA 85
           +G+G+ G +Y G    G  IA++ +++  S+              ++L+  L+H ++V  
Sbjct: 8   LGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQY 67

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS 119
           LG C     DD+++S IF+  E+VP G++ S ++
Sbjct: 68  LGTC----LDDNTIS-IFM--EFVPGGSISSILN 94

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 30/139 (21%), Positives = 67/139 (48%), Gaps = 20/139 (14%)

Query: 50  FIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEY 108
            +A++ L+   + + RN F+  I+++S+L+  +++  L  C      D     + +I EY
Sbjct: 48  LVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRLLAVCIT---SDP----LCMITEY 100

Query: 109 VPNGTLRSWISGHAWQ---------SLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLK 159
           + NG L  ++S H  Q         +++++  I  A  +A G+++L +         +L 
Sbjct: 101 MENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSS---LNFVHRDLA 157

Query: 160 ITDILLDQNLVAKISSYNL 178
             + L+ +N   KI+ + +
Sbjct: 158 TRNCLVGKNYTIKIADFGM 176

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 40/160 (25%), Positives = 60/160 (37%), Gaps = 20/160 (12%)

Query: 26  FDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMK------KSHSTRNFMHHIELISKLR 78
           F   A +G G  G++     K  G   AI+ LK        +  S        E  +  R
Sbjct: 1   FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSER 60

Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGV 138
           H  LV+    CF+      +   +  + EY   G L   I  H            AA  V
Sbjct: 61  HPFLVNLFA-CFQ------TEDHVCFVMEYAAGGDLMMHI--HTDVFSEPRAVFYAAC-V 110

Query: 139 ARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
             G+Q+LH      +   +LK+ ++LLD     KI+ + L
Sbjct: 111 VLGLQYLHEN---KIVYRDLKLDNLLLDTEGFVKIADFGL 147

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 39/169 (23%), Positives = 79/169 (46%), Gaps = 19/169 (11%)

Query: 32  MGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCF 90
           +G+G+ G++Y+ + K  G   A + ++ K      ++M  IE+++   H ++V  LG   
Sbjct: 20  LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLG--- 76

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 150
             Y+D     +++++ E+ P G + + I     + LT  Q       +   +Q+LH+   
Sbjct: 77  AFYWD----GKLWIMIEFCPGGAVDA-IMLELDRGLTEPQIQVICRQMLEALQYLHS--- 128

Query: 151 PGVFSNNLKITDILLDQNLVAK-----ISSYNLPLLAENAEKVGHVTPY 194
             +   +LK  ++LL  +   K     +S+ N+  L      +G  TPY
Sbjct: 129 MKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIG--TPY 175

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 23/155 (14%)

Query: 32  MGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH-------LV 83
           +G GS  ++   RLK N    A++ +K +  H   +    I+ +   +H          +
Sbjct: 3   IGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDED----IDWVQTEKHVFEQASSNPFL 58

Query: 84  SALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQ 143
             L  CF+      + SR+FL+ EYV  G L   +           +  +A I +A  + 
Sbjct: 59  VGLHSCFQ------TTSRLFLVIEYVNGGDLMFHMQRQRKLPEEHARFYAAEICIA--LN 110

Query: 144 FLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           FLH     G+   +LK+ ++LLD +   K++ Y +
Sbjct: 111 FLHE---RGIIYRDLKLDNVLLDADGHIKLTDYGM 142

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 16/150 (10%)

Query: 32  MGEGSKGQMYRGRL----KNGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           +G G  G++ RG L    K    +AI  L+   S   R  F+     + +  H ++V   
Sbjct: 13  LGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLE 72

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
           G         +  + + ++ EY+ NG L S++  H  Q L   Q +    G+A G+++L 
Sbjct: 73  GVI-------TRGNTMMIVTEYMSNGALDSFLRKHEGQ-LVAGQLMGMLPGLASGMKYLS 124

Query: 147 TGIVPGVFSNNLKITDILLDQNLVAKISSY 176
                G     L    +L++ +LV KIS +
Sbjct: 125 E---MGYVHKGLAAHKVLVNSDLVCKISGF 151

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 28/155 (18%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCL------KMKKSHSTRNFMHHIELISK 76
           ++F+    +G GS G++   R K +G + A++ L      K+K+     N      ++  
Sbjct: 1   DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLN---EKRILQS 57

Query: 77  LRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI--SGHAWQSLTWTQRISA 134
           +RH  LV+  G     + DDS+   ++L+ EYVP G L S +  SG         +  +A
Sbjct: 58  IRHPFLVNLYGS----FQDDSN---LYLVMEYVPGGELFSHLRKSGRF--PEPVARFYAA 108

Query: 135 AIGVARGIQFLHT-GIVPGVFSNNLKITDILLDQN 168
            + +A  +++LH+  IV      +LK  ++LLD +
Sbjct: 109 QVVLA--LEYLHSLDIV----YRDLKPENLLLDSD 137

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 38.9 bits (90), Expect = 0.001
 Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 16/160 (10%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++       T +A++ +K   S S   F+    ++  L+H  LV        
Sbjct: 14  LGAGQFGEVWMATYNKHTKVAVKTMK-PGSMSVEAFLAEANVMKTLQHDKLVKL------ 66

Query: 92  CYFDDSSVSR--IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGI 149
                + V++  I++I E++  G+L  ++           + I  +  +A G+ F+    
Sbjct: 67  ----HAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQ-- 120

Query: 150 VPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVG 189
                  +L+  +IL+  +LV KI+ + L  + E+ E   
Sbjct: 121 -RNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTA 159

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 31/148 (20%), Positives = 69/148 (46%), Gaps = 18/148 (12%)

Query: 25  NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMH-HIE--LISKLRHC 80
           + +    +G G+ G+++  R + +  + A++ + + +    +   H H E  ++ ++ H 
Sbjct: 2   DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHP 61

Query: 81  HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVAR 140
            ++      F    D      ++++ EYVP G L S++      S +     ++ I  A 
Sbjct: 62  FIIRL----FWTEHDQRF---LYMLMEYVPGGELFSYLRNSGRFSNSTGLFYASEIVCA- 113

Query: 141 GIQFLHT-GIVPGVFSNNLKITDILLDQ 167
            +++LH+  IV      +LK  +ILLD+
Sbjct: 114 -LEYLHSKEIV----YRDLKPENILLDK 136

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 29/165 (17%)

Query: 25  NFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSH------STRNFMHHIELISKL 77
            F+    +GEG+ G +YR R   +G  +A++ ++M          S R     I L+  L
Sbjct: 8   EFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLR----EITLLLNL 63

Query: 78  RHCHLVS----ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRIS 133
           RH ++V      +G           +  IFL+ EY     L S +        + +Q   
Sbjct: 64  RHPNIVELKEVVVG---------KHLDSIFLVMEYCEQ-DLASLLDNMP-TPFSESQVKC 112

Query: 134 AAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
             + + RG+Q+LH      +   +LK++++LL      KI+ + L
Sbjct: 113 LMLQLLRGLQYLHENF---IIHRDLKVSNLLLTDKGCLKIADFGL 154

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 32/156 (20%), Positives = 68/156 (43%), Gaps = 43/156 (27%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMK-KSHSTRNFMHHIELISKLR-HCHLVSALGHC 89
           GEG+  ++ + +  K G + AI+C+K   KS    N +  I+ + +L  H +++  +   
Sbjct: 8   GEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLI--- 64

Query: 90  FECYFDDSSVSRIFLIFE---------------YVPNGTLRSWISGHAWQSLTWTQRISA 134
            E  FD  +  R+ L+FE                +P   ++S++    +Q L        
Sbjct: 65  -EVLFDRKT-GRLALVFELMDMNLYELIKGRKRPLPEKRVKSYM----YQLL-------- 110

Query: 135 AIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV 170
                + +  +H     G+F  ++K  +IL+  +++
Sbjct: 111 -----KSLDHMHRN---GIFHRDIKPENILIKDDIL 138

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 9/76 (11%)

Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR--IFLI 105
           G  +A++ L+   +   R+F   IE++  L+H ++V   G C+       S  R  + L+
Sbjct: 33  GEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCY-------SAGRRNLRLV 85

Query: 106 FEYVPNGTLRSWISGH 121
            EY+P G+LR ++  H
Sbjct: 86  MEYLPYGSLRDYLQKH 101

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 15/158 (9%)

Query: 25  NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLK---MKKSHSTRNFMHHIELISKLRHC 80
           +F+    +G+GS G++     K      AI+ LK   + +       M    +++     
Sbjct: 1   DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKP 60

Query: 81  HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVAR 140
             ++ L  CF+      +V R++ + EYV  G L   I           Q +  A  ++ 
Sbjct: 61  PFLTQLHSCFQ------TVDRLYFVMEYVNGGDLMYHIQQVG--KFKEPQAVFYAAEISV 112

Query: 141 GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           G+ FLH     G+   +LK+ +++LD     KI+ + +
Sbjct: 113 GLFFLHR---RGIIYRDLKLDNVMLDSEGHIKIADFGM 147

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 18/140 (12%)

Query: 33  GEGSKGQMYRGRLKN-GTFIAIRCLK---MKKSHSTRNFMHHIELISKLRHCHLVSALGH 88
           G+GS G++   R K+ G   A++ LK   + K     + +    ++S++ H  +V     
Sbjct: 2   GKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIV----- 56

Query: 89  CFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT- 147
                F      +++L+ EY P G L S +S     S    +  +A I +A  +++LH+ 
Sbjct: 57  KLHYAFQTEE--KLYLVLEYAPGGELFSHLSKEGRFSEERARFYAAEIVLA--LEYLHSL 112

Query: 148 GIVPGVFSNNLKITDILLDQ 167
           GI+      +LK  +ILLD 
Sbjct: 113 GIIYR----DLKPENILLDA 128

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 29/147 (19%), Positives = 71/147 (48%), Gaps = 28/147 (19%)

Query: 50  FIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEY 108
            +A++ L+   + + RN F+  ++++S+L+  +++  LG C +   +D     + +I EY
Sbjct: 48  LVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRLLGVCVD---EDP----LCMITEY 100

Query: 109 VPNGTLRSWISGHAWQ-----------------SLTWTQRISAAIGVARGIQFLHTGIVP 151
           + NG L  ++S H                    +++++  +  A+ +A G+++L +    
Sbjct: 101 MENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSS---L 157

Query: 152 GVFSNNLKITDILLDQNLVAKISSYNL 178
                +L   + L+ +NL  KI+ + +
Sbjct: 158 NFVHRDLATRNCLVGENLTIKIADFGM 184

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 27/151 (17%), Positives = 69/151 (45%), Gaps = 15/151 (9%)

Query: 32  MGEGSKGQ--MYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALG 87
           +G+G+ G+  +YR R ++ + +  + + + +      R+ ++ I ++S L+H ++++   
Sbjct: 8   LGKGAFGEATLYR-RTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYN 66

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT 147
           H    + DD++   + +  EY   GTL   I     Q       +     +   + ++H 
Sbjct: 67  H----FMDDNT---LLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHK 119

Query: 148 GIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
               G+   ++K  +I L +  + K+  + +
Sbjct: 120 A---GILHRDIKTLNIFLTKAGLIKLGDFGI 147

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 36.9 bits (85), Expect = 0.004
 Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 31/159 (19%)

Query: 32  MGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSA----- 85
           +G+GS G+++   LK    F AI+ LK             + L+     C +V       
Sbjct: 3   LGKGSFGKVFLAELKGTNQFFAIKALK-----------KDVVLMDDDVECTMVEKRVLSL 51

Query: 86  ------LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVA 139
                 L H + C F   +   +F + EY+  G L   I       L      +A I   
Sbjct: 52  AWEHPFLTHLY-CTF--QTKENLFFVMEYLNGGDLMFHIQSCHKFDLPRATFYAAEIIC- 107

Query: 140 RGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
            G+QFLH+    G+   +LK+ +ILLD +   KI+ + +
Sbjct: 108 -GLQFLHS---KGIVYRDLKLDNILLDTDGHIKIADFGM 142

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.98
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.98
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.98
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.98
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.98
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.98
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.98
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.98
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.98
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.98
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.97
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.97
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.97
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.97
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.97
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.97
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.97
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.97
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.97
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.97
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.97
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.97
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.97
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.97
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.97
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.97
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.97
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.97
KOG0589	426	consensus Serine/threonine protein kinase [General	99.97
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.97
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.97
PTZ00267	478	NIMA-related protein kinase; Provisional	99.97
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.97
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.97
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.97
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.97
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.97
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.97
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.97
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.97
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.97
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.97
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.97
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.97
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.97
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.97
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.97
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.97
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.97
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.97
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.97
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.97
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.97
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.97
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.97
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.97
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.97
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.97
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.97
KOG0584	632	consensus Serine/threonine protein kinase [General	99.97
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.97
PHA03212	391	serine/threonine kinase US3; Provisional	99.97
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.97
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.97
KOG0586	596	consensus Serine/threonine protein kinase [General	99.97
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.97
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.97
KOG3653	534	consensus Transforming growth factor beta/activin	99.97
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.97
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.97
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.97
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.97
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.97
PTZ00283	496	serine/threonine protein kinase; Provisional	99.97
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.97
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.97
PTZ00036	440	glycogen synthase kinase; Provisional	99.97
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.97
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.96
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.96
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.96
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.96
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.96
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.96
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.96
PHA03209	357	serine/threonine kinase US3; Provisional	99.96
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.96
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.96
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.96
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.96
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.96
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.96
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.96
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.96
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.96
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.96
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.96
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.96
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.96
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.96
PHA02988	283	hypothetical protein; Provisional	99.96
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.96
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.96
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.96
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.96
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.96
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.96
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.96
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.96
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.96
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.96
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.96
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.96
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.96
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.96
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.96
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.96
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.96
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.96
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.96
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.96
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.96
KOG0610	459	consensus Putative serine/threonine protein kinase	99.96
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.96
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.96
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.96
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.96
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.96
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.96
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.96
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.96
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.96
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.96
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.96
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.96
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.96
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.96
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.96
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.96
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.96
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.96
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.96
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.96
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.96
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.96
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.96
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.96
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.96
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.96
PHA03211	461	serine/threonine kinase US3; Provisional	99.96
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.96
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.96
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.96
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.96
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.96
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.96
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.96
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.96
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.96
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.96
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.96
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.96
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.96
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.96
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.96
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.96
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.96
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.96
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.96
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.96
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.96
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.96
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.96
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.96
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.96
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.96
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.96
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.96
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.96
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.96
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.96
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.96
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.96
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.96
PHA03207	392	serine/threonine kinase US3; Provisional	99.96
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.96
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.96
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.96
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.96
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.96
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.96
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.96
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.96
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.96
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.95
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.95
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.95
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.95
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.95
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.95
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.95
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.95
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.95
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.95
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.95
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.95
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.95
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.95
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.95
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.95
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.95
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.95
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.95
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.95
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.95
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.95
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.95
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.95
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.95
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.95
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.95
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.95
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.95
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.95
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.95
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.95
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.95
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.95
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.95
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.95
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.95
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.95
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.95
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.95
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.95
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.95
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.95
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.95
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.95
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.95
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.95
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.95
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.95
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.95
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.95
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.95
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.95
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.95
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.95
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.95
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.95
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.95
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.95
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.95
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.95
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.95
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.95
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.95
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.95
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.95
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.95
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.95
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.95
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.95
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.95
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.95
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.95
PRK09188	365	serine/threonine protein kinase; Provisional	99.95
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.95
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.95
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.95
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.95
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.95
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.95
KOG1152	772	consensus Signal transduction serine/threonine kin	99.95
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.95
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.95
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.95
PTZ00284	467	protein kinase; Provisional	99.95
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.95
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.95
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.95
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.95
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.95
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.95
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.95
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.95
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.95
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.95
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.95
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.95
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.95
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.95
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.95
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.95
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.95
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.95
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.94
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.94
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.94
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.94
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.94
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.94
PHA03210	501	serine/threonine kinase US3; Provisional	99.94
PLN00009	294	cyclin-dependent kinase A; Provisional	99.94
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.94
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.94
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.94
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.94
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.94
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.94
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.94
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.94
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.94
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.94
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.94
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.94
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.94
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.94
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.94
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.94
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.94
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.94
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.94
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.94
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.94
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.94
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.94
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.94
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.94
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.94
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.94
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.94
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.94
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.94
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.94
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.94
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.93
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.93
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.93
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.93
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.93
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.93
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.93
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.93
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.93
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.93
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.93
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.93
PHA02882	294	putative serine/threonine kinase; Provisional	99.93
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.93
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.93
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.93
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.93
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.92
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.92
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.92
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.92
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.92
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.92
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.92
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.91
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.91
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.9
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.9
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.89
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.89
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.89
smart00090	237	RIO RIO-like kinase.	99.88
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.87
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.87
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.87
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.86
PRK10345	210	hypothetical protein; Provisional	99.86
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.86
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.86
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.86
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.85
PRK14879	211	serine/threonine protein kinase; Provisional	99.85
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.84
PRK12274	218	serine/threonine protein kinase; Provisional	99.84
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.84
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.83
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.82
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.82
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.8
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.79
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.78
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.76
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.75
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.74
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.73
PLN00181	793	protein SPA1-RELATED; Provisional	99.7
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.65
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.64
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.64
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.55
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.53
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.51
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.5
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.5
KOG3087	229	consensus Serine/threonine protein kinase [General	99.48
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.43
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.43
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.38
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.35
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	99.33
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.32
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	99.3
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.26
KOG1243	690	consensus Protein kinase [General function predict	99.22
COG0478	304	RIO-like serine/threonine protein kinase fused to	99.21
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.2
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.2
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	99.14
PRK09902	216	hypothetical protein; Provisional	99.12
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.11
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	99.09
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.97
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.88
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.86
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.76
KOG1266	458	consensus Protein kinase [Signal transduction mech	98.74
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.67
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.67
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.66
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	98.66
PF01636	239	APH: Phosphotransferase enzyme family This family	98.65
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	98.47
COG4248	637	Uncharacterized protein with protein kinase and he	98.39
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	98.35
PLN02876	822	acyl-CoA dehydrogenase	98.27
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	98.22
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	98.21
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	98.18
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	98.17
PRK05231	319	homoserine kinase; Provisional	98.12
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	98.11
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	98.09
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	98.09
KOG2268	465	consensus Serine/threonine protein kinase [Signal	98.08
PRK10593	297	hypothetical protein; Provisional	98.03
KOG2270	520	consensus Serine/threonine protein kinase involved	97.99
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	97.86
KOG0576	829	consensus Mitogen-activated protein kinase kinase	97.77
PRK09550	401	mtnK methylthioribose kinase; Reviewed	97.7
PLN02236	344	choline kinase	97.59
KOG0606	1205	consensus Microtubule-associated serine/threonine	97.51
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	97.38
KOG2137	700	consensus Protein kinase [Signal transduction mech	97.34
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	97.18
PRK11768	325	serine/threonine protein kinase; Provisional	97.14
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	97.12
PRK06148	1013	hypothetical protein; Provisional	97.06
COG2334	331	Putative homoserine kinase type II (protein kinase	97.06
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	96.98
PLN02756	418	S-methyl-5-thioribose kinase	96.92
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	96.9
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	96.69
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	96.52
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	96.44
PTZ00384	383	choline kinase; Provisional	96.12
PRK12396	409	5-methylribose kinase; Reviewed	96.1
PHA03111	444	Ser/Thr kinase; Provisional	96.04
PTZ00296	442	choline kinase; Provisional	95.98
PRK10271	188	thiK thiamine kinase; Provisional	95.87
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	95.77
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	95.71
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	95.45
PF05445	434	Pox_ser-thr_kin: Poxvirus serine/threonine protein	95.42

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-41  Score=266.52  Aligned_cols=188  Identities=36%  Similarity=0.712  Sum_probs=166.0

Q ss_pred             cccccCHHHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccce
Q 028725           10 AYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHC   89 (205)
Q Consensus        10 ~~~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~   89 (205)
                      ....|++.++..++++|...+.||+|+||.||+|...+|..||||++.........+|.+|+.++.+++|||+++++|+|
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC  140 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYC  140 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEE
Confidence            56789999999999999999999999999999999988899999988755433155599999999999999999999999


Q ss_pred             eeecccCCCCC-eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC
Q 028725           90 FECYFDDSSVS-RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN  168 (205)
Q Consensus        90 ~~~~~~~~~~~-~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~  168 (205)
                      .+       .+ ..++|+||+++|+|.+++.......++|..+..|+.++++||.|||..+..+|+||||||+||++|++
T Consensus       141 ~e-------~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~  213 (361)
T KOG1187|consen  141 LE-------GGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDED  213 (361)
T ss_pred             ec-------CCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCC
Confidence            87       45 59999999999999999987653388999999999999999999999877789999999999999999


Q ss_pred             CceeEcCCCchhhccc-ccccccc-cccccccCCCCCC
Q 028725          169 LVAKISSYNLPLLAEN-AEKVGHV-TPYSGSINPTNSA  204 (205)
Q Consensus       169 ~~~~l~Dfg~a~~~~~-~~~~~~~-~~~~~~~aPE~~~  204 (205)
                      +++||+|||+|+.... ....... .||.+|+|||+..
T Consensus       214 ~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~  251 (361)
T KOG1187|consen  214 FNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYAS  251 (361)
T ss_pred             CCEEccCccCcccCCccccceeeecCCCCccCChhhhc
Confidence            9999999999976665 3333333 8999999999863

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-40  Score=252.92  Aligned_cols=169  Identities=24%  Similarity=0.413  Sum_probs=153.5

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc--CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK--KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ...+|...+.||.|+|++||+|+++ ++..||||.+.+.  .....+.+..|+.+|+.++||||+.+++++.+       
T Consensus         8 ~~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~-------   80 (429)
T KOG0595|consen    8 VVGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIED-------   80 (429)
T ss_pred             ccccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEec-------
Confidence            4578999999999999999999965 5889999999766  34556778899999999999999999999877       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC------Ccee
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN------LVAK  172 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~------~~~~  172 (205)
                      .+.+|+|||||.||+|.+++..++  .+++.+...++.|++.||++||+   .+|+||||||.|||++..      -.+|
T Consensus        81 ~~~i~lVMEyC~gGDLs~yi~~~~--~l~e~t~r~Fm~QLA~alq~L~~---~~IiHRDLKPQNiLLs~~~~~~~~~~LK  155 (429)
T KOG0595|consen   81 DDFIYLVMEYCNGGDLSDYIRRRG--RLPEATARHFMQQLASALQFLHE---NNIIHRDLKPQNILLSTTARNDTSPVLK  155 (429)
T ss_pred             CCeEEEEEEeCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCcceEEeccCCCCCCCceEE
Confidence            679999999999999999999875  79999999999999999999999   699999999999999864      4579


Q ss_pred             EcCCCchhhcccccccccccccccccCCCC
Q 028725          173 ISSYNLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       173 l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      |+|||+|+.+.+.......+|++-|||||.
T Consensus       156 IADFGfAR~L~~~~~a~tlcGSplYMAPEV  185 (429)
T KOG0595|consen  156 IADFGFARFLQPGSMAETLCGSPLYMAPEV  185 (429)
T ss_pred             ecccchhhhCCchhHHHHhhCCccccCHHH
Confidence            999999999999888888999999999995

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.8e-38  Score=253.69  Aligned_cols=170  Identities=20%  Similarity=0.409  Sum_probs=156.8

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .+|..++.||+|+|+.||.++. .+|..||+|++.+.   +....+.+.+|+++.++++||||++++++|.+       .
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FED-------s   90 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFED-------S   90 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeec-------C
Confidence            5699999999999999999995 78999999999765   45667889999999999999999999999977       7


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ++.|+|+|.|++++|..+++.+.  .+++.....+.+||+.||.|||+   .+|+|||||..|++++++.++||+|||+|
T Consensus        91 ~nVYivLELC~~~sL~el~Krrk--~ltEpEary~l~QIv~GlkYLH~---~~IiHRDLKLGNlfL~~~~~VKIgDFGLA  165 (592)
T KOG0575|consen   91 NNVYIVLELCHRGSLMELLKRRK--PLTEPEARYFLRQIVEGLKYLHS---LGIIHRDLKLGNLFLNENMNVKIGDFGLA  165 (592)
T ss_pred             CceEEEEEecCCccHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHh---cCceecccchhheeecCcCcEEeccccee
Confidence            89999999999999999999664  89999999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccc-cccccccccccccCCCCCCC
Q 028725          180 LLAENA-EKVGHVTPYSGSINPTNSAR  205 (205)
Q Consensus       180 ~~~~~~-~~~~~~~~~~~~~aPE~~~~  205 (205)
                      ..+..+ ++....+||+.|+|||...|
T Consensus       166 t~le~~~Erk~TlCGTPNYIAPEVl~k  192 (592)
T KOG0575|consen  166 TQLEYDGERKKTLCGTPNYIAPEVLNK  192 (592)
T ss_pred             eeecCcccccceecCCCcccChhHhcc
Confidence            988866 67778899999999997643

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.2e-38  Score=240.62  Aligned_cols=171  Identities=21%  Similarity=0.324  Sum_probs=149.5

Q ss_pred             HhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccCC-------cCHHHHHHHHHHHhccCCCcccccccceeeec
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKS-------HSTRNFMHHIELISKLRHCHLVSALGHCFECY   93 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~~-------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   93 (205)
                      ....|.+.+.||+|+||.|-+|. .++|++||+|++++...       .....+.+|+++|+++.||||+++.+++..  
T Consensus       170 ~~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~--  247 (475)
T KOG0615|consen  170 FNDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEV--  247 (475)
T ss_pred             hcceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeec--
Confidence            44568899999999999999999 45799999999976531       123346799999999999999999999876  


Q ss_pred             ccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC---Cc
Q 028725           94 FDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN---LV  170 (205)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~---~~  170 (205)
                           ....|+||||+.||.|.+++..+.  .+.+..-..+++|++.|+.|||+   +||+||||||+|||+..+   ..
T Consensus       248 -----~ds~YmVlE~v~GGeLfd~vv~nk--~l~ed~~K~~f~Qll~avkYLH~---~GI~HRDiKPeNILl~~~~e~~l  317 (475)
T KOG0615|consen  248 -----PDSSYMVLEYVEGGELFDKVVANK--YLREDLGKLLFKQLLTAVKYLHS---QGIIHRDIKPENILLSNDAEDCL  317 (475)
T ss_pred             -----CCceEEEEEEecCccHHHHHHhcc--ccccchhHHHHHHHHHHHHHHHH---cCcccccCCcceEEeccCCcceE
Confidence                 556799999999999999998775  67777778899999999999999   899999999999999866   78


Q ss_pred             eeEcCCCchhhcccccccccccccccccCCCCCC
Q 028725          171 AKISSYNLPLLAENAEKVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       171 ~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~~  204 (205)
                      +||+|||+|+...+...-...+||+.|.|||..+
T Consensus       318 lKItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl~  351 (475)
T KOG0615|consen  318 LKITDFGLAKVSGEGSFMKTLCGTPSYVAPEVLA  351 (475)
T ss_pred             EEecccchhhccccceehhhhcCCccccChhhee
Confidence            9999999999998887777889999999999753

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=9.1e-38  Score=237.10  Aligned_cols=168  Identities=17%  Similarity=0.350  Sum_probs=150.6

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc-CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC-
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS-  100 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~-  100 (205)
                      .+.+.++.||+|..|+||++.++ +++.+|+|++... .+...+++.+|+++++.++||+|++++|.|+.       .. 
T Consensus        79 ~dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~-------~~~  151 (364)
T KOG0581|consen   79 SDLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYS-------NGE  151 (364)
T ss_pred             HHhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEe-------CCc
Confidence            46778889999999999999975 6889999999555 34556788999999999999999999999987       44 


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      .+.++||||++|+|.+++...+  .+++..+..++.++++||.|||+.  +.|+||||||+|+||++.|.+||+|||.++
T Consensus       152 ~isI~mEYMDgGSLd~~~k~~g--~i~E~~L~~ia~~VL~GL~YLh~~--~~IIHRDIKPsNlLvNskGeVKicDFGVS~  227 (364)
T KOG0581|consen  152 EISICMEYMDGGSLDDILKRVG--RIPEPVLGKIARAVLRGLSYLHEE--RKIIHRDIKPSNLLVNSKGEVKICDFGVSG  227 (364)
T ss_pred             eEEeehhhcCCCCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHhhc--cCeeeccCCHHHeeeccCCCEEeccccccH
Confidence            5999999999999999998664  689999999999999999999964  799999999999999999999999999999


Q ss_pred             hcccccccccccccccccCCCCC
Q 028725          181 LAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      .+.++ ..+...||..|||||..
T Consensus       228 ~lvnS-~a~tfvGT~~YMsPERi  249 (364)
T KOG0581|consen  228 ILVNS-IANTFVGTSAYMSPERI  249 (364)
T ss_pred             Hhhhh-hcccccccccccChhhh
Confidence            88887 66778999999999963

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-37  Score=235.80  Aligned_cols=172  Identities=19%  Similarity=0.333  Sum_probs=152.7

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      ....+|++++.||+|+||.|+.++. .+++.+|+|++++..   ..+.+...+|..+|..++||.|+++.-.+.+     
T Consensus        22 ~~~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt-----   96 (357)
T KOG0598|consen   22 VGPDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQT-----   96 (357)
T ss_pred             CChhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEeccc-----
Confidence            3457899999999999999999994 569999999998764   3456778899999999999999999888876     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                        .+.+|+|++|+.||.|.-.+++..  .+++.....++..|+.||.|||+   .+|+||||||+|||+|.+|.++|+||
T Consensus        97 --~~kLylVld~~~GGeLf~hL~~eg--~F~E~~arfYlaEi~lAL~~LH~---~gIiyRDlKPENILLd~~GHi~LtDF  169 (357)
T KOG0598|consen   97 --EEKLYLVLDYLNGGELFYHLQREG--RFSEDRARFYLAEIVLALGYLHS---KGIIYRDLKPENILLDEQGHIKLTDF  169 (357)
T ss_pred             --CCeEEEEEeccCCccHHHHHHhcC--CcchhHHHHHHHHHHHHHHHHHh---CCeeeccCCHHHeeecCCCcEEEecc
Confidence              789999999999999999998765  79999999999999999999999   89999999999999999999999999


Q ss_pred             Cchhhcccc-cccccccccccccCCCCCC
Q 028725          177 NLPLLAENA-EKVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       177 g~a~~~~~~-~~~~~~~~~~~~~aPE~~~  204 (205)
                      |+++..-.. ......+||..|||||..-
T Consensus       170 gL~k~~~~~~~~t~tfcGT~eYmAPEil~  198 (357)
T KOG0598|consen  170 GLCKEDLKDGDATRTFCGTPEYMAPEILL  198 (357)
T ss_pred             ccchhcccCCCccccccCCccccChHHHh
Confidence            999855544 4555579999999999643

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-36  Score=239.20  Aligned_cols=174  Identities=24%  Similarity=0.443  Sum_probs=147.6

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCc--CHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH--STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .........+.+|+|+||+||+|.+.....||+|.+......  ..+.|.+|+.++.+++||||++++|+|.+       
T Consensus        38 i~~~~l~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~-------  110 (362)
T KOG0192|consen   38 IDPDELPIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTS-------  110 (362)
T ss_pred             cChHHhhhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC-------
Confidence            334555666779999999999999984444999999754322  25689999999999999999999999976       


Q ss_pred             CC-eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCc-eeecCCccccEEeCCCC-ceeEcC
Q 028725           99 VS-RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG-VFSNNLKITDILLDQNL-VAKISS  175 (205)
Q Consensus        99 ~~-~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~-i~h~dlkp~nilv~~~~-~~~l~D  175 (205)
                      .. ..++||||+++|+|.+++.......+++..+..++.+|+.||.|||+   .+ |+||||||+|+|++.++ .+||+|
T Consensus       111 ~~~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~---~~~iIHrDLK~~NiLv~~~~~~~KI~D  187 (362)
T KOG0192|consen  111 PPGSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHS---EGPIIHRDLKSDNILVDLKGKTLKIAD  187 (362)
T ss_pred             CCCceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhc---CCCeeecccChhhEEEcCCCCEEEECC
Confidence            33 68999999999999999987433589999999999999999999999   57 99999999999999998 999999


Q ss_pred             CCchhhcccc-cccccccccccccCCCCCC
Q 028725          176 YNLPLLAENA-EKVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       176 fg~a~~~~~~-~~~~~~~~~~~~~aPE~~~  204 (205)
                      ||+++..... .......||+.|||||.+.
T Consensus       188 FGlsr~~~~~~~~~~~~~GT~~wMAPEv~~  217 (362)
T KOG0192|consen  188 FGLSREKVISKTSMTSVAGTYRWMAPEVLR  217 (362)
T ss_pred             CccceeeccccccccCCCCCccccChhhhc
Confidence            9999877764 3333379999999999764

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1e-36  Score=239.01  Aligned_cols=172  Identities=22%  Similarity=0.354  Sum_probs=150.5

Q ss_pred             HhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ....|+.++.||+|.||.||+|+ ..+|+.||+|.+..+.  ........+|+.+|+++.||||+++.+...+     ..
T Consensus       115 ~~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~-----~~  189 (560)
T KOG0600|consen  115 RADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTS-----KL  189 (560)
T ss_pred             chHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEe-----cC
Confidence            34568899999999999999999 5679999999997664  5556778899999999999999999998876     23


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ...+|+|+|||++ +|.-++... +..+++..+..++.|++.||.|||.   .+++|||||.+|||||++|.+||+|||+
T Consensus       190 ~~siYlVFeYMdh-DL~GLl~~p-~vkft~~qIKc~mkQLl~Gl~~cH~---~gvlHRDIK~SNiLidn~G~LKiaDFGL  264 (560)
T KOG0600|consen  190 SGSIYLVFEYMDH-DLSGLLSSP-GVKFTEPQIKCYMKQLLEGLEYCHS---RGVLHRDIKGSNILIDNNGVLKIADFGL  264 (560)
T ss_pred             CceEEEEEecccc-hhhhhhcCC-CcccChHHHHHHHHHHHHHHHHHhh---cCeeeccccccceEEcCCCCEEeccccc
Confidence            5689999999988 888877653 3579999999999999999999999   8999999999999999999999999999


Q ss_pred             hhhccccc--ccccccccccccCCCCC
Q 028725          179 PLLAENAE--KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~--~~~~~~~~~~~~aPE~~  203 (205)
                      |++++...  .....+-|.+|.|||..
T Consensus       265 Ar~y~~~~~~~~T~rVvTLWYRpPELL  291 (560)
T KOG0600|consen  265 ARFYTPSGSAPYTSRVVTLWYRPPELL  291 (560)
T ss_pred             eeeccCCCCcccccceEEeeccChHHh
Confidence            99887765  44556999999999963

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=7.5e-37  Score=226.90  Aligned_cols=168  Identities=18%  Similarity=0.281  Sum_probs=145.6

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      +.|+.+..+|+|+||.||+|+++ +|+.||||.+.-+.  +...+-..+|+++|++++|+|++.++++|..       ..
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrr-------kr   74 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRR-------KR   74 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHh-------cc
Confidence            56888899999999999999965 59999999996332  2334556789999999999999999999976       77


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      .+++|+||++. ++-+.++..+ ..++...+..+++|++.|+.|+|+   .+++||||||+||+|+.++.+||+|||+|+
T Consensus        75 klhLVFE~~dh-TvL~eLe~~p-~G~~~~~vk~~l~Q~l~ai~~cHk---~n~IHRDIKPENILit~~gvvKLCDFGFAR  149 (396)
T KOG0593|consen   75 KLHLVFEYCDH-TVLHELERYP-NGVPSELVKKYLYQLLKAIHFCHK---NNCIHRDIKPENILITQNGVVKLCDFGFAR  149 (396)
T ss_pred             eeEEEeeecch-HHHHHHHhcc-CCCCHHHHHHHHHHHHHHhhhhhh---cCeecccCChhheEEecCCcEEeccchhhH
Confidence            99999999988 5555566554 578899999999999999999999   699999999999999999999999999999


Q ss_pred             hcc-cccccccccccccccCCCCC
Q 028725          181 LAE-NAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~-~~~~~~~~~~~~~~~aPE~~  203 (205)
                      .+. ++.....++.|.||.|||..
T Consensus       150 ~L~~pgd~YTDYVATRWYRaPELL  173 (396)
T KOG0593|consen  150 TLSAPGDNYTDYVATRWYRAPELL  173 (396)
T ss_pred             hhcCCcchhhhhhhhhhccChhhh
Confidence            988 55566678999999999963

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.5e-37  Score=238.61  Aligned_cols=174  Identities=17%  Similarity=0.264  Sum_probs=153.3

Q ss_pred             HHhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccCCcC-HHHHHHHHHHHhccC-CCcccccccceeeecccCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHS-TRNFMHHIELISKLR-HCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~~~~-~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~~   97 (205)
                      ...++|.+.+.||.|+||.||+|. ..++..||||.++++--.. .-.-.+|+..|+++. ||||+++.+++.+.     
T Consensus         7 ~~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~-----   81 (538)
T KOG0661|consen    7 IFMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDN-----   81 (538)
T ss_pred             hHHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhcc-----
Confidence            346889999999999999999999 5568999999998663222 222357999999998 99999999999871     


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ...+++|||+|+. +|-++++.+ +..+++..+..|++||++||.|+|+   .|++|||+||+||||.....+||+|||
T Consensus        82 -~~~L~fVfE~Md~-NLYqLmK~R-~r~fse~~irnim~QilqGL~hiHk---~GfFHRDlKPENiLi~~~~~iKiaDFG  155 (538)
T KOG0661|consen   82 -DRILYFVFEFMDC-NLYQLMKDR-NRLFSESDIRNIMYQILQGLAHIHK---HGFFHRDLKPENILISGNDVIKIADFG  155 (538)
T ss_pred             -CceEeeeHHhhhh-hHHHHHhhc-CCcCCHHHHHHHHHHHHHHHHHHHh---cCcccccCChhheEecccceeEecccc
Confidence             2389999999966 999999988 4789999999999999999999999   699999999999999988999999999


Q ss_pred             chhhcccccccccccccccccCCCCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTNSAR  205 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~~~~  205 (205)
                      +||......+...++.|.+|.|||..-|
T Consensus       156 LARev~SkpPYTeYVSTRWYRAPEvLLr  183 (538)
T KOG0661|consen  156 LAREVRSKPPYTEYVSTRWYRAPEVLLR  183 (538)
T ss_pred             cccccccCCCcchhhhcccccchHHhhh
Confidence            9999999899999999999999997543

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.7e-37  Score=227.25  Aligned_cols=177  Identities=18%  Similarity=0.313  Sum_probs=148.9

Q ss_pred             HHhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ....+|++.+.||+|.||+||++. ..+|+.+|.|.++-..  ....+.+..|+.+|++++||||+++.+..+.     .
T Consensus        16 ~~l~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~-----~   90 (375)
T KOG0591|consen   16 KTLADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFI-----E   90 (375)
T ss_pred             ccHHHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhh-----c
Confidence            345679999999999999999999 6689999999887553  3445678899999999999999999884443     2


Q ss_pred             CCCeEEEEEeecCCCcHHHhhc--cCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-ceeecCCccccEEeCCCCceeEc
Q 028725           98 SVSRIFLIFEYVPNGTLRSWIS--GHAWQSLTWTQRISAAIGVARGIQFLHTGIVP-GVFSNNLKITDILLDQNLVAKIS  174 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~-~i~h~dlkp~nilv~~~~~~~l~  174 (205)
                      ....++++||++.+|+|.+.++  +..+..+++.++|.++.|++.||..+|..... -++||||||.||+++.+|.+||+
T Consensus        91 ~~evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLG  170 (375)
T KOG0591|consen   91 DNEVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLG  170 (375)
T ss_pred             cchhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeec
Confidence            2445899999999999999997  33445799999999999999999999983222 38999999999999999999999


Q ss_pred             CCCchhhccccc-ccccccccccccCCCC
Q 028725          175 SYNLPLLAENAE-KVGHVTPYSGSINPTN  202 (205)
Q Consensus       175 Dfg~a~~~~~~~-~~~~~~~~~~~~aPE~  202 (205)
                      |||+++.+.... -....+||+.||+||.
T Consensus       171 DfGL~r~l~s~~tfA~S~VGTPyYMSPE~  199 (375)
T KOG0591|consen  171 DFGLGRFLSSKTTFAHSLVGTPYYMSPER  199 (375)
T ss_pred             cchhHhHhcchhHHHHhhcCCCcccCHHH
Confidence            999999888765 3455799999999994

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=5.9e-35  Score=213.12  Aligned_cols=167  Identities=20%  Similarity=0.372  Sum_probs=147.3

Q ss_pred             cCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .+|...+.+|+|.||.||+|. ..+|+.||+|.++....  .......+|+..|+.++|+||+.+++++..       .+
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~-------~~   74 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPH-------KS   74 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccC-------CC
Confidence            468889999999999999999 56799999999976632  234567899999999999999999999976       67


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      .+.+|+||++. +|+..++.+. ..++...+..++.++++|+.|||.   ..|+||||||.|++|+++|.+||+|||+|+
T Consensus        75 ~l~lVfEfm~t-dLe~vIkd~~-i~l~pa~iK~y~~m~LkGl~y~H~---~~IlHRDlKPnNLLis~~g~lKiADFGLAr  149 (318)
T KOG0659|consen   75 NLSLVFEFMPT-DLEVVIKDKN-IILSPADIKSYMLMTLKGLAYCHS---KWILHRDLKPNNLLISSDGQLKIADFGLAR  149 (318)
T ss_pred             ceEEEEEeccc-cHHHHhcccc-cccCHHHHHHHHHHHHHHHHHHHh---hhhhcccCCccceEEcCCCcEEeecccchh
Confidence            89999999976 9999998665 578999999999999999999999   799999999999999999999999999999


Q ss_pred             hccccccc-ccccccccccCCCC
Q 028725          181 LAENAEKV-GHVTPYSGSINPTN  202 (205)
Q Consensus       181 ~~~~~~~~-~~~~~~~~~~aPE~  202 (205)
                      .+...... ...+-|.+|.|||.
T Consensus       150 ~f~~p~~~~~~~V~TRWYRAPEL  172 (318)
T KOG0659|consen  150 FFGSPNRIQTHQVVTRWYRAPEL  172 (318)
T ss_pred             ccCCCCcccccceeeeeccChHH
Confidence            88766544 33489999999994

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=2e-35  Score=218.46  Aligned_cols=167  Identities=22%  Similarity=0.352  Sum_probs=149.8

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ..+|+..+.||.|+||.|.+++.+ +|.-+|+|++++..   ....+...+|..+|+.+.||.++++.+.+.+       
T Consensus        43 l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d-------  115 (355)
T KOG0616|consen   43 LQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKD-------  115 (355)
T ss_pred             hhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeecc-------
Confidence            367899999999999999999954 58899999998764   3445567789999999999999999998876       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      .+.+++||||++||.|.+++.+..  .+++.....++.||+.|+.|||+   .+|++|||||+||++|++|.+||.|||+
T Consensus       116 ~~~lymvmeyv~GGElFS~Lrk~~--rF~e~~arFYAAeivlAleylH~---~~iiYRDLKPENiLlD~~G~iKitDFGF  190 (355)
T KOG0616|consen  116 NSNLYMVMEYVPGGELFSYLRKSG--RFSEPHARFYAAEIVLALEYLHS---LDIIYRDLKPENLLLDQNGHIKITDFGF  190 (355)
T ss_pred             CCeEEEEEeccCCccHHHHHHhcC--CCCchhHHHHHHHHHHHHHHHHh---cCeeeccCChHHeeeccCCcEEEEeccc
Confidence            789999999999999999998765  79999999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |+.....  ....+||+.|+|||..
T Consensus       191 AK~v~~r--T~TlCGTPeYLAPEii  213 (355)
T KOG0616|consen  191 AKRVSGR--TWTLCGTPEYLAPEII  213 (355)
T ss_pred             eEEecCc--EEEecCCccccChHHh
Confidence            9877754  5668999999999964

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-34  Score=228.43  Aligned_cols=172  Identities=20%  Similarity=0.331  Sum_probs=152.2

Q ss_pred             HHhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccC----C-cCHHHHHHHHHHHhccC-CCcccccccceeeec
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKK----S-HSTRNFMHHIELISKLR-HCHLVSALGHCFECY   93 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~----~-~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~   93 (205)
                      ...++|.+++.||+|+||.|+.|. ..++..||+|+++++.    . ...+.+.+|+.+++.++ ||||+++.+++..  
T Consensus        14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t--   91 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFAT--   91 (370)
T ss_pred             cccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEec--
Confidence            456789999999999999999998 4578999999887642    2 23456678999999999 9999999999876  


Q ss_pred             ccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC-Ccee
Q 028725           94 FDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN-LVAK  172 (205)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~-~~~~  172 (205)
                           ...+++||||+.+|.|.+.+...  ..+.+.....++.|++.|+.|||+   .||+||||||+|++++.+ +++|
T Consensus        92 -----~~~~~ivmEy~~gGdL~~~i~~~--g~l~E~~ar~~F~Qlisav~y~H~---~gi~HRDLK~ENilld~~~~~~K  161 (370)
T KOG0583|consen   92 -----PTKIYIVMEYCSGGDLFDYIVNK--GRLKEDEARKYFRQLISAVAYCHS---RGIVHRDLKPENILLDGNEGNLK  161 (370)
T ss_pred             -----CCeEEEEEEecCCccHHHHHHHc--CCCChHHHHHHHHHHHHHHHHHHh---CCEeeCCCCHHHEEecCCCCCEE
Confidence                 56799999999999999999884  378889999999999999999999   799999999999999998 9999


Q ss_pred             EcCCCchhhc-ccccccccccccccccCCCCCC
Q 028725          173 ISSYNLPLLA-ENAEKVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       173 l~Dfg~a~~~-~~~~~~~~~~~~~~~~aPE~~~  204 (205)
                      |+|||++... .........+||+.|+|||...
T Consensus       162 l~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~  194 (370)
T KOG0583|consen  162 LSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLS  194 (370)
T ss_pred             EeccccccccCCCCCcccCCCCCcccCCHHHhC
Confidence            9999999988 4666777789999999999765

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4e-34  Score=219.15  Aligned_cols=172  Identities=22%  Similarity=0.381  Sum_probs=148.9

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ..+|..++.||+|+||.||++... +|...|+|.+........+.+.+|+.+|.+++||||+++.|.....     ....
T Consensus        16 ~~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~-----~~~~   90 (313)
T KOG0198|consen   16 ISNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSR-----ENDE   90 (313)
T ss_pred             cchhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccc-----cCee
Confidence            567999999999999999999954 5899999999876444477889999999999999999999963320     0136


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC-CCceeEcCCCchh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-NLVAKISSYNLPL  180 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~-~~~~~l~Dfg~a~  180 (205)
                      .++.|||+++|+|.+++.+.++ .+++..+..+.+|+++||.|||+   +|++|+||||+|||++. ++.+||+|||++.
T Consensus        91 ~~i~mEy~~~GsL~~~~~~~g~-~l~E~~v~~ytr~iL~GL~ylHs---~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~  166 (313)
T KOG0198|consen   91 YNIFMEYAPGGSLSDLIKRYGG-KLPEPLVRRYTRQILEGLAYLHS---KGIVHCDIKPANILLDPSNGDVKLADFGLAK  166 (313)
T ss_pred             eEeeeeccCCCcHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHh---CCEeccCcccceEEEeCCCCeEEeccCcccc
Confidence            8999999999999999998775 79999999999999999999998   89999999999999999 7999999999998


Q ss_pred             hccc----ccccccccccccccCCCCC
Q 028725          181 LAEN----AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~----~~~~~~~~~~~~~~aPE~~  203 (205)
                      ....    ........||+.|||||..
T Consensus       167 ~~~~~~~~~~~~~~~~Gtp~~maPEvi  193 (313)
T KOG0198|consen  167 KLESKGTKSDSELSVQGTPNYMAPEVI  193 (313)
T ss_pred             ccccccccccccccccCCccccCchhh
Confidence            6663    2334457999999999975

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=5.5e-35  Score=231.02  Aligned_cols=172  Identities=23%  Similarity=0.350  Sum_probs=150.5

Q ss_pred             HHhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEeccc---CCcCHHHHHHHHHHHhcc-CCCcccccccceeeeccc
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMK---KSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFD   95 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~   95 (205)
                      ...++|..++.||+|+|++|++|+ ..+++.+|+|++.+.   +....+-+..|-..|.+| .||+|++++-.|.+    
T Consensus        70 k~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD----  145 (604)
T KOG0592|consen   70 KTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQD----  145 (604)
T ss_pred             CChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeec----
Confidence            456889999999999999999999 557999999999766   234445566788888888 79999999988877    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                         ...+|+|+||+++|.|.++|.+.+  .+++.....++.+|+.||.|||+   .|||||||||+|||+|.++.++|.|
T Consensus       146 ---~~sLYFvLe~A~nGdll~~i~K~G--sfde~caR~YAAeIldAleylH~---~GIIHRDlKPENILLd~dmhikITD  217 (604)
T KOG0592|consen  146 ---EESLYFVLEYAPNGDLLDLIKKYG--SFDETCARFYAAEILDALEYLHS---NGIIHRDLKPENILLDKDGHIKITD  217 (604)
T ss_pred             ---ccceEEEEEecCCCcHHHHHHHhC--cchHHHHHHHHHHHHHHHHHHHh---cCceeccCChhheeEcCCCcEEEee
Confidence               678999999999999999998775  79999999999999999999999   7999999999999999999999999


Q ss_pred             CCchhhccccccc--------------ccccccccccCCCCCC
Q 028725          176 YNLPLLAENAEKV--------------GHVTPYSGSINPTNSA  204 (205)
Q Consensus       176 fg~a~~~~~~~~~--------------~~~~~~~~~~aPE~~~  204 (205)
                      ||.|+.+......              ...+||..|.+||...
T Consensus       218 FGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~  260 (604)
T KOG0592|consen  218 FGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLN  260 (604)
T ss_pred             ccccccCChhhccccCccCcccccCcccceeeeecccCHHHhc
Confidence            9999877654322              3469999999999754

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-34  Score=227.63  Aligned_cols=170  Identities=19%  Similarity=0.375  Sum_probs=155.2

Q ss_pred             hcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ...|..-..||+|+.|.||.|. ..+++.||+|++........+.+.+|+.+++..+|+||+.+++.++.       .+.
T Consensus       272 ~~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv-------~de  344 (550)
T KOG0578|consen  272 RSKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLV-------GDE  344 (550)
T ss_pred             hhhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcc-------cce
Confidence            4568888999999999999999 55688999999998888888889999999999999999999998876       578


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      +|+||||++||+|.+.+...   .+++..+..+++++++||.|||.   .+|+|||||.+||+++.+|.+||+|||++..
T Consensus       345 LWVVMEym~ggsLTDvVt~~---~~~E~qIA~Icre~l~aL~fLH~---~gIiHrDIKSDnILL~~~g~vKltDFGFcaq  418 (550)
T KOG0578|consen  345 LWVVMEYMEGGSLTDVVTKT---RMTEGQIAAICREILQGLKFLHA---RGIIHRDIKSDNILLTMDGSVKLTDFGFCAQ  418 (550)
T ss_pred             eEEEEeecCCCchhhhhhcc---cccHHHHHHHHHHHHHHHHHHHh---cceeeeccccceeEeccCCcEEEeeeeeeec
Confidence            99999999999999998875   48999999999999999999999   7999999999999999999999999999987


Q ss_pred             ccccc-ccccccccccccCCCCCCC
Q 028725          182 AENAE-KVGHVTPYSGSINPTNSAR  205 (205)
Q Consensus       182 ~~~~~-~~~~~~~~~~~~aPE~~~~  205 (205)
                      +.... +....+||++|||||...|
T Consensus       419 i~~~~~KR~TmVGTPYWMAPEVvtr  443 (550)
T KOG0578|consen  419 ISEEQSKRSTMVGTPYWMAPEVVTR  443 (550)
T ss_pred             cccccCccccccCCCCccchhhhhh
Confidence            77655 6667899999999999876

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2e-34  Score=227.62  Aligned_cols=180  Identities=24%  Similarity=0.412  Sum_probs=152.1

Q ss_pred             ccCHHHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeee
Q 028725           13 TFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC   92 (205)
Q Consensus        13 ~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   92 (205)
                      .+..+.|......+..++.||+|-||.||.|.+.....||+|.++.. ....+.|.+|++++++++|++|++++++|.. 
T Consensus       195 ~~~~d~wei~r~~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~-~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~-  272 (468)
T KOG0197|consen  195 DLARDPWEIPREELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEG-SMSPEAFLREAQIMKKLRHEKLVKLYGVCTK-  272 (468)
T ss_pred             ccccCCeeecHHHHHHHHHhcCCccceEEEEEEcCCCcccceEEecc-ccChhHHHHHHHHHHhCcccCeEEEEEEEec-
Confidence            33345666666778889999999999999999986669999999744 4556778899999999999999999999976 


Q ss_pred             cccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCcee
Q 028725           93 YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAK  172 (205)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~  172 (205)
                            +..++|||||++.|+|.+++....+..+.....+.++.||++||.||++   ++++||||.++||||+++..+|
T Consensus       273 ------~~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes---~~~IHRDLAARNiLV~~~~~vK  343 (468)
T KOG0197|consen  273 ------QEPIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLES---KNYIHRDLAARNILVDEDLVVK  343 (468)
T ss_pred             ------CCceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHh---CCccchhhhhhheeeccCceEE
Confidence                  4579999999999999999998666789999999999999999999999   7999999999999999999999


Q ss_pred             EcCCCchhhcccccccc--cccccccccCCCCC
Q 028725          173 ISSYNLPLLAENAEKVG--HVTPYSGSINPTNS  203 (205)
Q Consensus       173 l~Dfg~a~~~~~~~~~~--~~~~~~~~~aPE~~  203 (205)
                      |+|||+|+...++.-..  ...--.-|.|||..
T Consensus       344 IsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~  376 (468)
T KOG0197|consen  344 ISDFGLARLIGDDEYTASEGGKFPIKWTAPEAL  376 (468)
T ss_pred             EcccccccccCCCceeecCCCCCCceecCHHHH
Confidence            99999999655543211  11223348899974

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.8e-34  Score=206.71  Aligned_cols=169  Identities=21%  Similarity=0.344  Sum_probs=151.2

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .++|++++.||+|-||.||.|+.+ ++..||+|++.++.   ......+.+|+++.+.++||||+++++.+.+       
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd-------   93 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHD-------   93 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheec-------
Confidence            378999999999999999999954 57789999997653   3445678899999999999999999999988       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ...+|+++||.++|++-..+.......+++...+.++.|++.|+.|+|.   .+++||||||+|+|++..+..+++|||-
T Consensus        94 ~~riyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~---k~VIhRdiKpenlLlg~~~~lkiAdfGw  170 (281)
T KOG0580|consen   94 SKRIYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHL---KRVIHRDIKPENLLLGSAGELKIADFGW  170 (281)
T ss_pred             cceeEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhcc---CCcccCCCCHHHhccCCCCCeeccCCCc
Confidence            6789999999999999999996666689999999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      +.... ..+....+||..|++||-
T Consensus       171 sV~~p-~~kR~tlcgt~dyl~pEm  193 (281)
T KOG0580|consen  171 SVHAP-SNKRKTLCGTLDYLPPEM  193 (281)
T ss_pred             eeecC-CCCceeeecccccCCHhh
Confidence            97666 556666899999999994

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.9e-34  Score=220.93  Aligned_cols=168  Identities=23%  Similarity=0.361  Sum_probs=154.4

Q ss_pred             hcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccCC---cCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKS---HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ..+|++.+.||+|.||.|-+|. +..|+.||+|.++++..   ++.-.+.+|+++++.+.||||++++++|..       
T Consensus        52 kHRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFEN-------  124 (668)
T KOG0611|consen   52 KHRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFEN-------  124 (668)
T ss_pred             hhHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcC-------
Confidence            4679999999999999999999 56799999999977654   344456789999999999999999999966       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      .+.+.+||||..+|.|.+++..+.  .+++.....+++||..|+.|||+   .+++|||||.+||++|.++++||+|||+
T Consensus       125 kdKIvivMEYaS~GeLYDYiSer~--~LsErEaRhfFRQIvSAVhYCHk---nrVvHRDLKLENILLD~N~NiKIADFGL  199 (668)
T KOG0611|consen  125 KDKIVIVMEYASGGELYDYISERG--SLSEREARHFFRQIVSAVHYCHK---NRVVHRDLKLENILLDQNNNIKIADFGL  199 (668)
T ss_pred             CceEEEEEEecCCccHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHhh---ccceecccchhheeecCCCCeeeeccch
Confidence            789999999999999999999875  89999999999999999999999   5999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      +.++.+..-....+|++-|.+||-
T Consensus       200 SNly~~~kfLqTFCGSPLYASPEI  223 (668)
T KOG0611|consen  200 SNLYADKKFLQTFCGSPLYASPEI  223 (668)
T ss_pred             hhhhccccHHHHhcCCcccCCccc
Confidence            999999888888999999999995

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=1.1e-33  Score=212.47  Aligned_cols=170  Identities=22%  Similarity=0.348  Sum_probs=148.3

Q ss_pred             hcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .+.|+.++.|++|+||.||+|+ -+++..||+|+++.+.  ....-.-.+|+.+|.+++||||+.+..+...     ...
T Consensus        75 v~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG-----~~~  149 (419)
T KOG0663|consen   75 VEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVG-----SNM  149 (419)
T ss_pred             HHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEec-----ccc
Confidence            3568888999999999999999 4578899999997664  3334456789999999999999999887765     456


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +.+|+||||+++ +|.+++..-+ +++.......+..|++.|+.|||.   ..|+||||||+|+++++.|.+||+|||+|
T Consensus       150 d~iy~VMe~~Eh-DLksl~d~m~-q~F~~~evK~L~~QlL~glk~lH~---~wilHRDLK~SNLLm~~~G~lKiaDFGLA  224 (419)
T KOG0663|consen  150 DKIYIVMEYVEH-DLKSLMETMK-QPFLPGEVKTLMLQLLRGLKHLHD---NWILHRDLKTSNLLLSHKGILKIADFGLA  224 (419)
T ss_pred             ceeeeeHHHHHh-hHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHhh---ceeEecccchhheeeccCCcEEecccchh
Confidence            789999999987 9999998655 689999999999999999999999   69999999999999999999999999999


Q ss_pred             hhccccccc-ccccccccccCCCC
Q 028725          180 LLAENAEKV-GHVTPYSGSINPTN  202 (205)
Q Consensus       180 ~~~~~~~~~-~~~~~~~~~~aPE~  202 (205)
                      +.+..+.+. ...+-|.+|.|||.
T Consensus       225 R~ygsp~k~~T~lVVTLWYRaPEL  248 (419)
T KOG0663|consen  225 REYGSPLKPYTPLVVTLWYRAPEL  248 (419)
T ss_pred             hhhcCCcccCcceEEEeeecCHHH
Confidence            988887544 45689999999995

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3e-33  Score=218.27  Aligned_cols=173  Identities=19%  Similarity=0.335  Sum_probs=144.1

Q ss_pred             HHHhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccC--------------CcCHHHHHHHHHHHhccCCCcccc
Q 028725           20 EEATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKK--------------SHSTRNFMHHIELISKLRHCHLVS   84 (205)
Q Consensus        20 ~~~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~--------------~~~~~~~~~e~~~l~~l~~~~i~~   84 (205)
                      ....|+|.+++.||+|.||.|-+|. ..+++.||+|++.+..              ....+.+.+|+.+++++.||||++
T Consensus        93 ~k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~  172 (576)
T KOG0585|consen   93 RKQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVK  172 (576)
T ss_pred             ceehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeE
Confidence            3456899999999999999999999 4569999999996531              123457889999999999999999


Q ss_pred             cccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEE
Q 028725           85 ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL  164 (205)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nil  164 (205)
                      ++++.=+     +..+.+|+|+||+..|.+...-...  ..+++.+.+.+++++..||.|||.   ++|+||||||+|+|
T Consensus       173 LiEvLDD-----P~s~~~YlVley~s~G~v~w~p~d~--~els~~~Ar~ylrDvv~GLEYLH~---QgiiHRDIKPsNLL  242 (576)
T KOG0585|consen  173 LIEVLDD-----PESDKLYLVLEYCSKGEVKWCPPDK--PELSEQQARKYLRDVVLGLEYLHY---QGIIHRDIKPSNLL  242 (576)
T ss_pred             EEEeecC-----cccCceEEEEEeccCCccccCCCCc--ccccHHHHHHHHHHHHHHHHHHHh---cCeeccccchhheE
Confidence            9997644     5578999999999988766533222  238999999999999999999999   89999999999999


Q ss_pred             eCCCCceeEcCCCchhhccc------ccccccccccccccCCCC
Q 028725          165 LDQNLVAKISSYNLPLLAEN------AEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       165 v~~~~~~~l~Dfg~a~~~~~------~~~~~~~~~~~~~~aPE~  202 (205)
                      ++++|.+||+|||.+.....      +.......||+-|+|||.
T Consensus       243 l~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~  286 (576)
T KOG0585|consen  243 LSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPEL  286 (576)
T ss_pred             EcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHh
Confidence            99999999999999976622      222233699999999996

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=8.1e-33  Score=209.51  Aligned_cols=175  Identities=19%  Similarity=0.358  Sum_probs=147.5

Q ss_pred             hcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCc-ccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCH-LVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~~~   98 (205)
                      ...|...+.||+|+||.||+|+ ..+|+.||+|.+..+..  .......+|+.+++.++|+| |+.+.+++....- ...
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~-~~~   88 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNN-HRG   88 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeeccc-ccc
Confidence            5668888889999999999999 45789999999976643  34566789999999999999 9999999876211 122


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCC--CCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAW--QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                      ...+++|+|+... +|..++.....  ..++...+..+++|++.||.|||+   .+|+||||||.|++|+++|.+||+||
T Consensus        89 ~~~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~---~~IlHRDLKPQNlLi~~~G~lKlaDF  164 (323)
T KOG0594|consen   89 IGKLYLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHS---HGILHRDLKPQNLLISSSGVLKLADF  164 (323)
T ss_pred             cceEEEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHh---CCeecccCCcceEEECCCCcEeeecc
Confidence            3488999999955 99999986543  357778899999999999999999   79999999999999999999999999


Q ss_pred             Cchhhccccc-ccccccccccccCCCC
Q 028725          177 NLPLLAENAE-KVGHVTPYSGSINPTN  202 (205)
Q Consensus       177 g~a~~~~~~~-~~~~~~~~~~~~aPE~  202 (205)
                      |+|+...-+. .......|.+|.|||.
T Consensus       165 GlAra~~ip~~~yt~evvTlWYRaPEv  191 (323)
T KOG0594|consen  165 GLARAFSIPMRTYTPEVVTLWYRAPEV  191 (323)
T ss_pred             chHHHhcCCcccccccEEEeeccCHHH
Confidence            9999777444 3566799999999995

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=8.8e-33  Score=218.30  Aligned_cols=148  Identities=18%  Similarity=0.319  Sum_probs=134.5

Q ss_pred             HHhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      ...++|++++.||+|+||.||+|. ..+|..+|+|+++++.   ..+.+.+..|-.+|...++|.|++++-.|.+     
T Consensus       138 ~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD-----  212 (550)
T KOG0605|consen  138 LSLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQD-----  212 (550)
T ss_pred             CCcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecC-----
Confidence            356889999999999999999999 4569999999998774   4456667789999999999999999988876     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                        ..++||||||++||++..++.+..  .+++.....++.+++.|+.-+|+   .|++||||||+|+|||..|.+||+||
T Consensus       213 --~~~LYLiMEylPGGD~mTLL~~~~--~L~e~~arfYiaE~vlAI~~iH~---~gyIHRDIKPdNlLiD~~GHiKLSDF  285 (550)
T KOG0605|consen  213 --KEYLYLIMEYLPGGDMMTLLMRKD--TLTEDWARFYIAETVLAIESIHQ---LGYIHRDIKPDNLLIDAKGHIKLSDF  285 (550)
T ss_pred             --CCeeEEEEEecCCccHHHHHHhcC--cCchHHHHHHHHHHHHHHHHHHH---cCcccccCChhheeecCCCCEeeccc
Confidence              789999999999999999998775  89999999999999999999999   89999999999999999999999999


Q ss_pred             Cchh
Q 028725          177 NLPL  180 (205)
Q Consensus       177 g~a~  180 (205)
                      |++.
T Consensus       286 GLs~  289 (550)
T KOG0605|consen  286 GLST  289 (550)
T ss_pred             cccc
Confidence            9984

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=2.8e-33  Score=222.67  Aligned_cols=168  Identities=19%  Similarity=0.354  Sum_probs=150.2

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ++|.+.+.||+|+||.||+|+.+ +.+.||+|.+.+..  ..+...+.+|+++++.++||||+.+++.+..       ..
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt-------~~   74 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFET-------SA   74 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcc-------cc
Confidence            68999999999999999999954 68899999998764  4457789999999999999999999998865       77


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      .+|+|+||+.| +|..++....  .++++.+..++.++..||.|||+   .+|+|||+||.||+++..+.+|++|||+|+
T Consensus        75 ~~~vVte~a~g-~L~~il~~d~--~lpEe~v~~~a~~LVsaL~yLhs---~rilhrd~kPqniLl~~~~~~KlcdFg~Ar  148 (808)
T KOG0597|consen   75 HLWVVTEYAVG-DLFTILEQDG--KLPEEQVRAIAYDLVSALYYLHS---NRILHRDMKPQNILLEKGGTLKLCDFGLAR  148 (808)
T ss_pred             eEEEEehhhhh-hHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHh---cCcccccCCcceeeecCCCceeechhhhhh
Confidence            89999999977 9999998765  89999999999999999999999   699999999999999999999999999999


Q ss_pred             hccccccc-ccccccccccCCCCCC
Q 028725          181 LAENAEKV-GHVTPYSGSINPTNSA  204 (205)
Q Consensus       181 ~~~~~~~~-~~~~~~~~~~aPE~~~  204 (205)
                      ........ ....||+-|||||..+
T Consensus       149 ~m~~~t~vltsikGtPlYmAPElv~  173 (808)
T KOG0597|consen  149 AMSTNTSVLTSIKGTPLYMAPELVE  173 (808)
T ss_pred             hcccCceeeeeccCcccccCHHHHc
Confidence            87765533 4459999999999753

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=4.6e-32  Score=209.31  Aligned_cols=169  Identities=19%  Similarity=0.239  Sum_probs=144.3

Q ss_pred             CCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           25 NFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .|+..+.||+|+||.||++.. .+++.||+|.+....   ......+.+|+.+++.+.|++++++.+.+.+       .+
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~-------~~   73 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYET-------KD   73 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEcc-------CC
Confidence            478889999999999999995 579999999986542   2233457789999999999999999887765       56


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++++||+++++|.+.+.......+++.....++.|++.||.|||+   .+++||||||+||++++++.++|+|||++.
T Consensus        74 ~~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~iiH~dikp~Nill~~~~~~kl~Dfg~~~  150 (285)
T cd05631          74 ALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQR---ERIVYRDLKPENILLDDRGHIRISDLGLAV  150 (285)
T ss_pred             eEEEEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHEEECCCCCEEEeeCCCcE
Confidence            89999999999999988765443468899999999999999999999   799999999999999999999999999998


Q ss_pred             hcccccccccccccccccCCCCC
Q 028725          181 LAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ............++..|+|||..
T Consensus       151 ~~~~~~~~~~~~g~~~y~aPE~~  173 (285)
T cd05631         151 QIPEGETVRGRVGTVGYMAPEVI  173 (285)
T ss_pred             EcCCCCeecCCCCCCCccCHhhh
Confidence            76554444456899999999975

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-32  Score=212.79  Aligned_cols=176  Identities=15%  Similarity=0.294  Sum_probs=154.3

Q ss_pred             HHHHHHhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeecc
Q 028725           17 EELEEATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (205)
Q Consensus        17 ~~~~~~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   94 (205)
                      .++......|++.+.||.|..++||+|. .+.+..||||++..++- .+.+.+.+|+..++.++||||++..-.|..   
T Consensus        19 ~~~p~n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv---   95 (516)
T KOG0582|consen   19 KEFPLNAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVV---   95 (516)
T ss_pred             ccCCCCccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEe---
Confidence            3555667899999999999999999999 56789999999988753 346889999999999999999999888876   


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEc
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  174 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~  174 (205)
                          ++.+|+||.++.+|++.+++...-...+++..+..|.+++++||.|||+   .|.||||+|+.||||+++|.++|+
T Consensus        96 ----~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~---~G~IHRdvKAgnILi~~dG~VkLa  168 (516)
T KOG0582|consen   96 ----DSELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQ---NGHIHRDVKAGNILIDSDGTVKLA  168 (516)
T ss_pred             ----cceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHh---cCceecccccccEEEcCCCcEEEc
Confidence                7899999999999999999986655679999999999999999999999   799999999999999999999999


Q ss_pred             CCCchhhccccc-cc----ccccccccccCCCC
Q 028725          175 SYNLPLLAENAE-KV----GHVTPYSGSINPTN  202 (205)
Q Consensus       175 Dfg~a~~~~~~~-~~----~~~~~~~~~~aPE~  202 (205)
                      |||.+..+.... +.    ....+|+.|||||.
T Consensus       169 dFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEv  201 (516)
T KOG0582|consen  169 DFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEV  201 (516)
T ss_pred             CceeeeeecccCceeeEeeccccCcccccChHH
Confidence            999876555433 11    34589999999997

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=3.6e-32  Score=216.64  Aligned_cols=148  Identities=18%  Similarity=0.300  Sum_probs=130.3

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|++.+.||+|+||.||+|... +++.+|+|+++...   ......+.+|..++..++|++|+++.+.+.+       .
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~-------~   73 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQD-------K   73 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEec-------C
Confidence            47899999999999999999954 58899999997542   2334567789999999999999999988765       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++||||+++++|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||++
T Consensus        74 ~~~~lv~E~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~lH~---~givHrDlKp~NILi~~~~~vkL~DFGla  148 (363)
T cd05628          74 LNLYLIMEFLPGGDMMTLLMKKD--TLTEEETQFYIAETVLAIDSIHQ---LGFIHRDIKPDNLLLDSKGHVKLSDFGLC  148 (363)
T ss_pred             CeEEEEEcCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeEecCCCHHHeEECCCCCEEEeeccCc
Confidence            68999999999999999987654  68899999999999999999999   79999999999999999999999999998


Q ss_pred             hhcc
Q 028725          180 LLAE  183 (205)
Q Consensus       180 ~~~~  183 (205)
                      +...
T Consensus       149 ~~~~  152 (363)
T cd05628         149 TGLK  152 (363)
T ss_pred             cccc
Confidence            7543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.5e-32  Score=213.20  Aligned_cols=166  Identities=19%  Similarity=0.318  Sum_probs=144.6

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|++.+.||+|+||.||+|... +++.||+|+++...   ......+.+|+.++..++||||+++.+.+..       .
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~-------~   73 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQD-------D   73 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEc-------C
Confidence            47999999999999999999965 58899999997542   2345667889999999999999999988765       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...+++|||+++++|.+++....  .+++.....++.|++.||.|||+   .+++||||||+||++++++.++|+|||++
T Consensus        74 ~~~~lv~e~~~g~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a  148 (333)
T cd05600          74 EYLYLAMEYVPGGDFRTLLNNLG--VLSEDHARFYMAEMFEAVDALHE---LGYIHRDLKPENFLIDASGHIKLTDFGLS  148 (333)
T ss_pred             CEEEEEEeCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCCEEEEeCcCC
Confidence            78999999999999999997653  68889999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      .....  ......||..|+|||..
T Consensus       149 ~~~~~--~~~~~~gt~~y~aPE~~  170 (333)
T cd05600         149 KGIVT--YANSVVGSPDYMAPEVL  170 (333)
T ss_pred             ccccc--ccCCcccCccccChhHh
Confidence            76654  33345799999999974

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=4e-32  Score=216.35  Aligned_cols=147  Identities=18%  Similarity=0.295  Sum_probs=130.5

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|++.+.||+|+||.||+|... +++.||+|+++...   ......+.+|+.++..++||||+++++.+.+       .
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~-------~   73 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQD-------E   73 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEc-------C
Confidence            47999999999999999999954 68899999997542   2334567789999999999999999988865       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++||||+++++|.+++....  .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++
T Consensus        74 ~~~~lv~E~~~~g~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~  148 (364)
T cd05599          74 NYLYLIMEYLPGGDMMTLLMKKD--TFTEEETRFYIAETILAIDSIHK---LGYIHRDIKPDNLLLDAKGHIKLSDFGLC  148 (364)
T ss_pred             CeEEEEECCCCCcHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEeecccc
Confidence            78999999999999999987654  68999999999999999999999   79999999999999999999999999998


Q ss_pred             hhc
Q 028725          180 LLA  182 (205)
Q Consensus       180 ~~~  182 (205)
                      ...
T Consensus       149 ~~~  151 (364)
T cd05599         149 TGL  151 (364)
T ss_pred             eec
Confidence            654

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=7e-32  Score=208.88  Aligned_cols=166  Identities=14%  Similarity=0.309  Sum_probs=143.5

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|++.+.||+|+||.||+|... +++.+|+|+++...   ......+.+|+.+++.++||||+++.+.+.+       .
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------~   73 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHD-------Q   73 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhcc-------C
Confidence            47899999999999999999954 68899999996542   2334567889999999999999999987765       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...+++|||+++++|.+++....  .+++.....++.|++.||.|||+   .+++||||||+||++++++.++|+|||++
T Consensus        74 ~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~NIli~~~~~~kl~Dfg~~  148 (291)
T cd05612          74 RFLYMLMEYVPGGELFSYLRNSG--RFSNSTGLFYASEIVCALEYLHS---KEIVYRDLKPENILLDKEGHIKLTDFGFA  148 (291)
T ss_pred             CeEEEEEeCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEEEecCcc
Confidence            68999999999999999987654  68889999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ......  .....|+..|+|||..
T Consensus       149 ~~~~~~--~~~~~gt~~y~aPE~~  170 (291)
T cd05612         149 KKLRDR--TWTLCGTPEYLAPEVI  170 (291)
T ss_pred             hhccCC--cccccCChhhcCHHHH
Confidence            866542  2235789999999964

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.98  E-value=1e-31  Score=214.89  Aligned_cols=145  Identities=14%  Similarity=0.260  Sum_probs=128.5

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|++.+.||+|+||.||+|.. .+++.+|+|++....   ......+.+|+.+++.++|+||+++.+.+.+       .
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~-------~   73 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQD-------K   73 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEc-------C
Confidence            4799999999999999999995 468899999996432   2345667889999999999999999988765       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +.+++||||+++++|.+++....  .+++.....++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||++
T Consensus        74 ~~~~lv~E~~~~g~L~~~i~~~~--~~~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nill~~~~~ikL~DFG~a  148 (376)
T cd05598          74 DNLYFVMDYIPGGDMMSLLIRLG--IFEEDLARFYIAELTCAIESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGLC  148 (376)
T ss_pred             CEEEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHEEECCCCCEEEEeCCCC
Confidence            78999999999999999997654  67888889999999999999999   79999999999999999999999999997


Q ss_pred             h
Q 028725          180 L  180 (205)
Q Consensus       180 ~  180 (205)
                      .
T Consensus       149 ~  149 (376)
T cd05598         149 T  149 (376)
T ss_pred             c
Confidence            5

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.98  E-value=8.7e-32  Score=215.70  Aligned_cols=146  Identities=14%  Similarity=0.240  Sum_probs=128.9

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      +.|..++.||+|+||.||+|.. .+++.+|+|++....   ......+.+|+.+++.++||||+++.+.+.+       .
T Consensus         1 ~~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~-------~   73 (381)
T cd05626           1 SMFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQD-------K   73 (381)
T ss_pred             CCceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEec-------C
Confidence            3688999999999999999995 468899999997542   2335568889999999999999999998865       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +..++||||+++++|.+++....  .+++.....++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||++
T Consensus        74 ~~~~lv~E~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~aL~~LH~---~givHrDlKp~Nili~~~~~~kL~DFGl~  148 (381)
T cd05626          74 DNLYFVMDYIPGGDMMSLLIRME--VFPEVLARFYIAELTLAIESVHK---MGFIHRDIKPDNILIDLDGHIKLTDFGLC  148 (381)
T ss_pred             CEEEEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCcHHHEEECCCCCEEEeeCcCC
Confidence            78999999999999999987654  68888899999999999999999   79999999999999999999999999997


Q ss_pred             hh
Q 028725          180 LL  181 (205)
Q Consensus       180 ~~  181 (205)
                      ..
T Consensus       149 ~~  150 (381)
T cd05626         149 TG  150 (381)
T ss_pred             cc
Confidence            53

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.98  E-value=3.5e-33  Score=211.84  Aligned_cols=168  Identities=21%  Similarity=0.290  Sum_probs=140.6

Q ss_pred             CCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEE
Q 028725           25 NFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (205)
                      .|...+.+|.|+||.||.|.. .+++.||||.+-.+..    --.+|+++++.++||||+++.-++......  +.-...
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r----~knrEl~im~~l~HpNIV~L~~~f~~~~~~--d~~~ln   98 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR----YKNRELQIMRKLDHPNIVRLLYFFSSSTES--DEVYLN   98 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC----cCcHHHHHHHhcCCcCeeeEEEEEEecCCC--chhHHH
Confidence            477889999999999999994 4578999998854432    223689999999999999998877652211  123556


Q ss_pred             EEEeecCCCcHHHhhcc--CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC-CceeEcCCCchh
Q 028725          104 LIFEYVPNGTLRSWISG--HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN-LVAKISSYNLPL  180 (205)
Q Consensus       104 lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~-~~~~l~Dfg~a~  180 (205)
                      +||||++. +|.+.+..  +.+..++...+.-+..|+.+||.|||.   .+|+||||||.|+|||.+ |.+||+|||.|+
T Consensus        99 lVleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~---~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK  174 (364)
T KOG0658|consen   99 LVLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHS---HGICHRDIKPQNLLVDPDTGVLKICDFGSAK  174 (364)
T ss_pred             HHHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHh---cCcccCCCChheEEEcCCCCeEEeccCCcce
Confidence            89999987 99998873  222467788888899999999999999   899999999999999966 999999999999


Q ss_pred             hcccccccccccccccccCCCC
Q 028725          181 LAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      .+..+++.....-|..|.|||.
T Consensus       175 ~L~~~epniSYicSRyYRaPEL  196 (364)
T KOG0658|consen  175 VLVKGEPNISYICSRYYRAPEL  196 (364)
T ss_pred             eeccCCCceeEEEeccccCHHH
Confidence            9999998888999999999996

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.98  E-value=8.1e-32  Score=211.96  Aligned_cols=167  Identities=17%  Similarity=0.342  Sum_probs=144.9

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .++|++.+.||+|+||.||+|... +++.+|+|+++...   ......+.+|+.+++.++||||+++++.+.+       
T Consensus        17 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------   89 (329)
T PTZ00263         17 LSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQD-------   89 (329)
T ss_pred             chheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEc-------
Confidence            477999999999999999999964 58899999996542   2345668889999999999999999998865       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      .+..+++|||+++++|.+.+....  .+++.....++.|++.||.|||+   .+++||||||+||++++++.++|+|||+
T Consensus        90 ~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~NIll~~~~~~kl~Dfg~  164 (329)
T PTZ00263         90 ENRVYFLLEFVVGGELFTHLRKAG--RFPNDVAKFYHAELVLAFEYLHS---KDIIYRDLKPENLLLDNKGHVKVTDFGF  164 (329)
T ss_pred             CCEEEEEEcCCCCChHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHEEECCCCCEEEeeccC
Confidence            678999999999999999987654  67888889999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +.......  ....||..|+|||..
T Consensus       165 ~~~~~~~~--~~~~gt~~y~aPE~~  187 (329)
T PTZ00263        165 AKKVPDRT--FTLCGTPEYLAPEVI  187 (329)
T ss_pred             ceEcCCCc--ceecCChhhcCHHHH
Confidence            98665432  335799999999964

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.98  E-value=7.5e-32  Score=215.16  Aligned_cols=170  Identities=16%  Similarity=0.261  Sum_probs=144.7

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      ...++|++.+.||+|+||.||++... +++.+|+|++++.   .......+.+|+.+++.++||||+++.+.+.+     
T Consensus        40 ~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~-----  114 (370)
T cd05621          40 MKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQD-----  114 (370)
T ss_pred             CCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEc-----
Confidence            34578999999999999999999964 5889999999643   22334567789999999999999999988765     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                        ....++||||+++++|.+++...   .+++.....++.|++.||.|||+   .+|+||||||+||++++++.++|+||
T Consensus       115 --~~~~~lv~Ey~~gg~L~~~l~~~---~~~~~~~~~~~~qil~aL~~LH~---~~IvHrDLKp~NILl~~~~~~kL~DF  186 (370)
T cd05621         115 --DKYLYMVMEYMPGGDLVNLMSNY---DVPEKWAKFYTAEVVLALDAIHS---MGLIHRDVKPDNMLLDKHGHLKLADF  186 (370)
T ss_pred             --CCEEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEECCCCCEEEEec
Confidence              67899999999999999998653   47888889999999999999999   79999999999999999999999999


Q ss_pred             Cchhhccccc--ccccccccccccCCCCC
Q 028725          177 NLPLLAENAE--KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~--~~~~~~~~~~~~aPE~~  203 (205)
                      |++.......  ......||..|+|||..
T Consensus       187 G~a~~~~~~~~~~~~~~~gt~~Y~aPE~~  215 (370)
T cd05621         187 GTCMKMDETGMVRCDTAVGTPDYISPEVL  215 (370)
T ss_pred             ccceecccCCceecccCCCCcccCCHHHH
Confidence            9998765432  22345799999999953

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.98  E-value=1.5e-31  Score=209.94  Aligned_cols=162  Identities=17%  Similarity=0.266  Sum_probs=137.9

Q ss_pred             eeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEE
Q 028725           30 AFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (205)
                      +.||+|+||.||++.. .+|+.+|+|+++...   ......+.+|+.+++.++||||+++.+.+..       .+..+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~-------~~~~~lv   73 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQT-------HDRLCFV   73 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEc-------CCEEEEE
Confidence            4689999999999995 468999999997542   2334567789999999999999999888765       6789999


Q ss_pred             EeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc-
Q 028725          106 FEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN-  184 (205)
Q Consensus       106 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~-  184 (205)
                      |||+++++|.+.+....  .+++..+..++.|++.||.|||+   .+|+||||||+||++++++.++|+|||+++.... 
T Consensus        74 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~L~~lH~---~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~  148 (323)
T cd05571          74 MEYANGGELFFHLSRER--VFSEDRARFYGAEIVSALGYLHS---CDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISD  148 (323)
T ss_pred             EeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHEEECCCCCEEEeeCCCCcccccC
Confidence            99999999999887654  68899999999999999999999   7999999999999999999999999999875432 


Q ss_pred             ccccccccccccccCCCCC
Q 028725          185 AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 ~~~~~~~~~~~~~~aPE~~  203 (205)
                      ........||..|+|||..
T Consensus       149 ~~~~~~~~gt~~y~aPE~~  167 (323)
T cd05571         149 GATMKTFCGTPEYLAPEVL  167 (323)
T ss_pred             CCcccceecCccccChhhh
Confidence            2233445799999999975

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.98  E-value=7e-32  Score=213.14  Aligned_cols=168  Identities=17%  Similarity=0.270  Sum_probs=144.7

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecC--CcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKN--GTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~--~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      ..++|++.+.||+|+||.||+|....  +..||+|++....   ......+.+|+.+++.++||||+++.+.+.+     
T Consensus        28 ~~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~-----  102 (340)
T PTZ00426         28 KYEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKD-----  102 (340)
T ss_pred             ChhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEe-----
Confidence            45679999999999999999998543  3689999986542   3345678889999999999999999998866     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                        .+..+++|||+++++|.+++....  .+++.....++.|++.||.|||+   .+++||||||+||+++.++.++|+||
T Consensus       103 --~~~~~lv~Ey~~~g~L~~~i~~~~--~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~ikL~DF  175 (340)
T PTZ00426        103 --ESYLYLVLEFVIGGEFFTFLRRNK--RFPNDVGCFYAAQIVLIFEYLQS---LNIVYRDLKPENLLLDKDGFIKMTDF  175 (340)
T ss_pred             --CCEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeEccCCCHHHEEECCCCCEEEecC
Confidence              678999999999999999997654  68889999999999999999999   79999999999999999999999999


Q ss_pred             CchhhcccccccccccccccccCCCCC
Q 028725          177 NLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |++......  .....||..|+|||..
T Consensus       176 G~a~~~~~~--~~~~~gt~~y~aPE~~  200 (340)
T PTZ00426        176 GFAKVVDTR--TYTLCGTPEYIAPEIL  200 (340)
T ss_pred             CCCeecCCC--cceecCChhhcCHHHH
Confidence            999866542  2345899999999964

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=1.1e-31  Score=214.76  Aligned_cols=146  Identities=18%  Similarity=0.281  Sum_probs=128.7

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|.+.+.||+|+||.||++.. .+++.||+|++.+..   ......+.+|+.+++.++||||+++++.+.+       .
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~-------~   73 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQD-------A   73 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEc-------C
Confidence            4789999999999999999985 468899999986532   2334567889999999999999999988865       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++||||+++++|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||++
T Consensus        74 ~~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~ql~~aL~~LH~---~givHrDlkp~NIll~~~~~~kl~DfGla  148 (377)
T cd05629          74 QYLYLIMEFLPGGDLMTMLIKYD--TFSEDVTRFYMAECVLAIEAVHK---LGFIHRDIKPDNILIDRGGHIKLSDFGLS  148 (377)
T ss_pred             CeeEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEECCCCCEEEeecccc
Confidence            68999999999999999987653  68888899999999999999999   79999999999999999999999999998


Q ss_pred             hh
Q 028725          180 LL  181 (205)
Q Consensus       180 ~~  181 (205)
                      +.
T Consensus       149 ~~  150 (377)
T cd05629         149 TG  150 (377)
T ss_pred             cc
Confidence            63

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.97  E-value=2.9e-31  Score=208.35  Aligned_cols=162  Identities=17%  Similarity=0.268  Sum_probs=137.5

Q ss_pred             eeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEE
Q 028725           30 AFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (205)
                      +.||+|+||.||++.. .+|+.||+|+++...   ......+.+|+.+++.++||||+++.+.+..       ....++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~-------~~~~~lv   73 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQT-------HDRLCFV   73 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEec-------CCEEEEE
Confidence            4689999999999995 468999999997542   2344567789999999999999999888765       5689999


Q ss_pred             EeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcccc
Q 028725          106 FEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENA  185 (205)
Q Consensus       106 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~  185 (205)
                      |||+++++|...+....  .+++..++.++.|++.||.|||+   .+++||||||+||++++++.++|+|||++......
T Consensus        74 ~E~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~  148 (323)
T cd05595          74 MEYANGGELFFHLSRER--VFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISD  148 (323)
T ss_pred             EeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEEcCCCCEEecccHHhccccCC
Confidence            99999999998887553  68899999999999999999999   79999999999999999999999999998754322


Q ss_pred             -cccccccccccccCCCCC
Q 028725          186 -EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       186 -~~~~~~~~~~~~~aPE~~  203 (205)
                       .......||..|+|||..
T Consensus       149 ~~~~~~~~gt~~y~aPE~~  167 (323)
T cd05595         149 GATMKTFCGTPEYLAPEVL  167 (323)
T ss_pred             CCccccccCCcCcCCcccc
Confidence             223345799999999975

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.97  E-value=1.8e-31  Score=213.95  Aligned_cols=145  Identities=14%  Similarity=0.272  Sum_probs=128.1

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|+..+.||+|+||.||+|.. .+++.+|+|++....   ......+.+|+.+++.++||||+++.+.+.+       .
T Consensus         1 ~~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~-------~   73 (382)
T cd05625           1 SMFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQD-------K   73 (382)
T ss_pred             CCcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEe-------C
Confidence            3688999999999999999995 468899999996542   2334567889999999999999999998876       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++||||+++|+|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||++
T Consensus        74 ~~~~lv~E~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~al~~lH~---~~ivHrDlKp~NILl~~~g~~kL~DFGla  148 (382)
T cd05625          74 DNLYFVMDYIPGGDMMSLLIRMG--IFPEDLARFYIAELTCAVESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGLC  148 (382)
T ss_pred             CEEEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEEeECCCC
Confidence            68999999999999999987653  67888899999999999999999   79999999999999999999999999997


Q ss_pred             h
Q 028725          180 L  180 (205)
Q Consensus       180 ~  180 (205)
                      .
T Consensus       149 ~  149 (382)
T cd05625         149 T  149 (382)
T ss_pred             c
Confidence            5

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.1e-31  Score=211.00  Aligned_cols=168  Identities=16%  Similarity=0.289  Sum_probs=145.8

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|.+.+.||+|+||.||+|... +++.||+|+++...   ......+.+|+.++..+.||||+++.+.+.+       .
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-------~   73 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQD-------E   73 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheec-------C
Confidence            47999999999999999999954 68999999997542   2445678889999999999999999988765       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +..++||||+++++|.+++...  ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++
T Consensus        74 ~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~---~giiH~Dlkp~NIll~~~~~~kL~Dfg~~  148 (350)
T cd05573          74 EHLYLVMEYMPGGDLMNLLIRK--DVFPEETARFYIAELVLALDSVHK---LGFIHRDIKPDNILIDADGHIKLADFGLC  148 (350)
T ss_pred             CeEEEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEeecCCCC
Confidence            7899999999999999999866  368899999999999999999999   79999999999999999999999999999


Q ss_pred             hhccccc------------------------------ccccccccccccCCCCC
Q 028725          180 LLAENAE------------------------------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~------------------------------~~~~~~~~~~~~aPE~~  203 (205)
                      .......                              ......||..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  202 (350)
T cd05573         149 KKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVL  202 (350)
T ss_pred             ccCcccCcccccccccccccccccccccccccccccccccccccCccccCHHHH
Confidence            7665433                              22345799999999964

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=5.5e-32  Score=218.44  Aligned_cols=169  Identities=17%  Similarity=0.295  Sum_probs=153.3

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ..-|++++.||.|+.|.|.+|++ .+|+.+|||++.+.   .......+.+|+.+++.+.|||++++++++.+       
T Consensus        11 iGpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~-------   83 (786)
T KOG0588|consen   11 IGPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWEN-------   83 (786)
T ss_pred             ccceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeecc-------
Confidence            45699999999999999999995 57999999999766   24456678899999999999999999999976       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ...+|+|.||+++|.|.+++...+  ++++.....++.||+.|+.|||.   .+|+|||+||+|+++|..+++||+|||+
T Consensus        84 ~~~lylvlEyv~gGELFdylv~kG--~l~e~eaa~ff~QIi~gv~yCH~---~~icHRDLKpENlLLd~~~nIKIADFGM  158 (786)
T KOG0588|consen   84 KQHLYLVLEYVPGGELFDYLVRKG--PLPEREAAHFFRQILDGVSYCHA---FNICHRDLKPENLLLDVKNNIKIADFGM  158 (786)
T ss_pred             CceEEEEEEecCCchhHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHhh---hcceeccCCchhhhhhcccCEeeeccce
Confidence            789999999999999999998775  78899999999999999999999   8999999999999999998999999999


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |.+-.++.-....+|++.|.|||-.
T Consensus       159 AsLe~~gklLeTSCGSPHYA~PEIV  183 (786)
T KOG0588|consen  159 ASLEVPGKLLETSCGSPHYAAPEIV  183 (786)
T ss_pred             eecccCCccccccCCCcccCCchhh
Confidence            9988877777778999999999953

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.97  E-value=4.6e-31  Score=207.59  Aligned_cols=162  Identities=19%  Similarity=0.284  Sum_probs=137.8

Q ss_pred             eeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEE
Q 028725           30 AFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (205)
                      +.||+|+||.||++.. .+++.+|+|++....   ......+.+|+.+++.++||||+++.+.+..       .+..++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------~~~~~lv   73 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQT-------KDRLCFV   73 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEc-------CCEEEEE
Confidence            4689999999999995 468999999997542   3345667889999999999999999887765       6789999


Q ss_pred             EeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc-
Q 028725          106 FEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN-  184 (205)
Q Consensus       106 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~-  184 (205)
                      |||+++++|.+.+....  .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++.... 
T Consensus        74 ~Ey~~~g~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~  148 (328)
T cd05593          74 MEYVNGGELFFHLSRER--VFSEDRTRFYGAEIVSALDYLHS---GKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITD  148 (328)
T ss_pred             EeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeEecccCHHHeEECCCCcEEEecCcCCccCCCc
Confidence            99999999998887653  68899999999999999999999   7999999999999999999999999999875432 


Q ss_pred             ccccccccccccccCCCCC
Q 028725          185 AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 ~~~~~~~~~~~~~~aPE~~  203 (205)
                      ........||..|+|||..
T Consensus       149 ~~~~~~~~gt~~y~aPE~~  167 (328)
T cd05593         149 AATMKTFCGTPEYLAPEVL  167 (328)
T ss_pred             ccccccccCCcCccChhhh
Confidence            2233345799999999975

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.9e-31  Score=216.08  Aligned_cols=170  Identities=24%  Similarity=0.371  Sum_probs=148.1

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhcc-CCCcccccccceeeeccc
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFD   95 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~   95 (205)
                      ....+|...+.||+|.||.|+++..+ +++.+|||++++.   ...+.+..+.|-+++... +||.++.++..+..    
T Consensus       365 ~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT----  440 (694)
T KOG0694|consen  365 LTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQT----  440 (694)
T ss_pred             ccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeeccccccc----
Confidence            44578999999999999999999965 5889999999877   456778888898888877 49999999998876    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                         .+.+|+||||+.||++..++..   ..+++.....++..++.||.|||+   .+|++||||.+|||+|.+|.+||+|
T Consensus       441 ---~~~l~fvmey~~Ggdm~~~~~~---~~F~e~rarfyaAev~l~L~fLH~---~~IIYRDlKLdNiLLD~eGh~kiAD  511 (694)
T KOG0694|consen  441 ---KEHLFFVMEYVAGGDLMHHIHT---DVFSEPRARFYAAEVVLGLQFLHE---NGIIYRDLKLDNLLLDTEGHVKIAD  511 (694)
T ss_pred             ---CCeEEEEEEecCCCcEEEEEec---ccccHHHHHHHHHHHHHHHHHHHh---cCceeeecchhheEEcccCcEEecc
Confidence               7899999999999994443333   369999999999999999999999   6999999999999999999999999


Q ss_pred             CCchhhcc-cccccccccccccccCCCCC
Q 028725          176 YNLPLLAE-NAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~-~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ||+++..- .+......+||+.|||||..
T Consensus       512 FGlcKe~m~~g~~TsTfCGTpey~aPEil  540 (694)
T KOG0694|consen  512 FGLCKEGMGQGDRTSTFCGTPEFLAPEVL  540 (694)
T ss_pred             cccccccCCCCCccccccCChhhcChhhh
Confidence            99997554 55677788999999999964

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.97  E-value=2.1e-31  Score=210.20  Aligned_cols=174  Identities=21%  Similarity=0.363  Sum_probs=139.8

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCcccccccceeee
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFEC   92 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~   92 (205)
                      -..++|++.+.||+|+||.||+|...      ++..||+|+++... ......+.+|+.++..+ +||||+++++.+.. 
T Consensus         4 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~-   82 (338)
T cd05102           4 FPRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTK-   82 (338)
T ss_pred             cchhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecC-
Confidence            34578999999999999999999742      35679999987443 23346788999999999 89999999997754 


Q ss_pred             cccCCCCCeEEEEEeecCCCcHHHhhccCC--------------------------------------------------
Q 028725           93 YFDDSSVSRIFLIFEYVPNGTLRSWISGHA--------------------------------------------------  122 (205)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--------------------------------------------------  122 (205)
                           .....+++|||+++|+|.+++....                                                  
T Consensus        83 -----~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T cd05102          83 -----PNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGST  157 (338)
T ss_pred             -----CCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCccc
Confidence                 1346899999999999999886421                                                  


Q ss_pred             ----------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccccc---ccc
Q 028725          123 ----------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVG  189 (205)
Q Consensus       123 ----------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~---~~~  189 (205)
                                ...+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++......   ...
T Consensus       158 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~  234 (338)
T cd05102         158 NPPQETDDLWKSPLTMEDLICYSFQVARGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKG  234 (338)
T ss_pred             ccchhccccccCCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCccceEEEcCCCcEEEeecccccccccCcchhccc
Confidence                      1247778888999999999999999   799999999999999999999999999997654322   112


Q ss_pred             cccccccccCCCCC
Q 028725          190 HVTPYSGSINPTNS  203 (205)
Q Consensus       190 ~~~~~~~~~aPE~~  203 (205)
                      ...++..|+|||..
T Consensus       235 ~~~~~~~y~aPE~~  248 (338)
T cd05102         235 SARLPLKWMAPESI  248 (338)
T ss_pred             CCCCCccccCcHHh
Confidence            23456789999964

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.97  E-value=2.6e-31  Score=212.21  Aligned_cols=174  Identities=15%  Similarity=0.247  Sum_probs=146.6

Q ss_pred             HHHHHHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeee
Q 028725           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFEC   92 (205)
Q Consensus        17 ~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   92 (205)
                      .++....++|++.+.||+|+||.||++... +++.+|+|++.+..   ......+.+|..+++.++||||+++.+.+.. 
T Consensus        36 ~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~-  114 (371)
T cd05622          36 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD-  114 (371)
T ss_pred             hhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc-
Confidence            344555689999999999999999999964 58899999986432   2334557789999999999999999988765 


Q ss_pred             cccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCcee
Q 028725           93 YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAK  172 (205)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~  172 (205)
                            ....+++|||+++++|.+++...   .+++.....++.|++.||.|||+   .+|+||||||+||++++++.++
T Consensus       115 ------~~~~~lv~Ey~~gg~L~~~~~~~---~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NIll~~~~~ik  182 (371)
T cd05622         115 ------DRYLYMVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGHLK  182 (371)
T ss_pred             ------CCEEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHH---CCEEeCCCCHHHEEECCCCCEE
Confidence                  67899999999999999998654   47888888999999999999999   7999999999999999999999


Q ss_pred             EcCCCchhhccccc--ccccccccccccCCCCC
Q 028725          173 ISSYNLPLLAENAE--KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       173 l~Dfg~a~~~~~~~--~~~~~~~~~~~~aPE~~  203 (205)
                      |+|||++.......  ......||..|+|||..
T Consensus       183 L~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l  215 (371)
T cd05622         183 LADFGTCMKMNKEGMVRCDTAVGTPDYISPEVL  215 (371)
T ss_pred             EEeCCceeEcCcCCcccccCcccCccccCHHHH
Confidence            99999998665432  22345799999999963

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.97  E-value=2.1e-31  Score=212.71  Aligned_cols=169  Identities=16%  Similarity=0.256  Sum_probs=143.4

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ..++|++.+.||+|+||.||++... +++.+|+|+++...   ......+.+|+.+++.++||||+++.+.+.+      
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~------  114 (370)
T cd05596          41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQD------  114 (370)
T ss_pred             CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEec------
Confidence            4567999999999999999999954 68899999996532   2344557789999999999999999987765      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ....++||||+++|+|.+++...   .+++.....++.|++.||.|||+   .+|+||||||+||++++++.++|+|||
T Consensus       115 -~~~~~lv~Ey~~gg~L~~~l~~~---~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~~kL~DfG  187 (370)
T cd05596         115 -DKYLYMVMEYMPGGDLVNLMSNY---DIPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGHLKLADFG  187 (370)
T ss_pred             -CCEEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEcCCCCEEEEecc
Confidence             66899999999999999988653   47788888899999999999999   799999999999999999999999999


Q ss_pred             chhhccccc--ccccccccccccCCCCC
Q 028725          178 LPLLAENAE--KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~--~~~~~~~~~~~~aPE~~  203 (205)
                      ++.......  ......||+.|+|||..
T Consensus       188 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~  215 (370)
T cd05596         188 TCMKMDANGMVRCDTAVGTPDYISPEVL  215 (370)
T ss_pred             ceeeccCCCcccCCCCCCCcCeECHHHh
Confidence            997665432  22345799999999953

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=5.8e-31  Score=207.26  Aligned_cols=169  Identities=17%  Similarity=0.228  Sum_probs=143.3

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|++.+.||+|+||.||++... +++.||+|++.+.   .......+.+|..++..++|+||+++.+.+.+       .
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-------~   73 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQD-------E   73 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEec-------C
Confidence            47999999999999999999954 5889999999643   23345567889999999999999999988765       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +..++||||+++++|.+++.... ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++
T Consensus        74 ~~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~  149 (331)
T cd05597          74 NNLYLVMDYYVGGDLLTLLSKFE-DRLPEDMARFYLAEMVLAIDSVHQ---LGYVHRDIKPDNVLLDKNGHIRLADFGSC  149 (331)
T ss_pred             CeEEEEEecCCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHh---CCeEECCCCHHHEEECCCCCEEEEECCce
Confidence            78999999999999999987532 368889999999999999999999   79999999999999999999999999998


Q ss_pred             hhcccccc--cccccccccccCCCCC
Q 028725          180 LLAENAEK--VGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~--~~~~~~~~~~~aPE~~  203 (205)
                      ........  .....||..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~gt~~y~aPE~~  175 (331)
T cd05597         150 LRLLADGTVQSNVAVGTPDYISPEIL  175 (331)
T ss_pred             eecCCCCCccccceeccccccCHHHH
Confidence            75544322  2234689999999964

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.97  E-value=6.1e-31  Score=209.34  Aligned_cols=147  Identities=17%  Similarity=0.304  Sum_probs=129.7

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|+..+.||+|+||.||++... +++.+|+|++....   ......+.+|..++..++||+|+++.+.+.+       .
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~-------~   73 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQD-------K   73 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEc-------C
Confidence            46889999999999999999954 68899999996532   3345667889999999999999999988765       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++||||+++++|.+++....  .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++
T Consensus        74 ~~~~lv~E~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~~L~~lH~---~givHrDLkp~NIli~~~~~vkL~DfG~~  148 (360)
T cd05627          74 RNLYLIMEFLPGGDMMTLLMKKD--TLSEEATQFYIAETVLAIDAIHQ---LGFIHRDIKPDNLLLDAKGHVKLSDFGLC  148 (360)
T ss_pred             CEEEEEEeCCCCccHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeEccCCCHHHEEECCCCCEEEeeccCC
Confidence            78999999999999999987654  68899999999999999999999   79999999999999999999999999998


Q ss_pred             hhc
Q 028725          180 LLA  182 (205)
Q Consensus       180 ~~~  182 (205)
                      ...
T Consensus       149 ~~~  151 (360)
T cd05627         149 TGL  151 (360)
T ss_pred             ccc
Confidence            654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=5.3e-31  Score=205.88  Aligned_cols=160  Identities=14%  Similarity=0.230  Sum_probs=136.5

Q ss_pred             eccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEEe
Q 028725           32 MGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE  107 (205)
Q Consensus        32 lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e  107 (205)
                      ||+|+||.||+|... +++.||+|+++...   ......+.+|+.+++.++||||+++.+.+..       .+..+++||
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~~~~lv~e   73 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQS-------PEKLYLVLA   73 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEec-------CCeEEEEEc
Confidence            699999999999954 58899999996542   3345667889999999999999999887765       678999999


Q ss_pred             ecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcccc-c
Q 028725          108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENA-E  186 (205)
Q Consensus       108 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~-~  186 (205)
                      |+++++|.+++....  .+++.....++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++..... .
T Consensus        74 ~~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~  148 (312)
T cd05585          74 FINGGELFHHLQREG--RFDLSRARFYTAELLCALENLHK---FNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDD  148 (312)
T ss_pred             CCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHeEECCCCcEEEEECcccccCccCCC
Confidence            999999999987653  68889999999999999999999   79999999999999999999999999999754332 2


Q ss_pred             ccccccccccccCCCCC
Q 028725          187 KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       187 ~~~~~~~~~~~~aPE~~  203 (205)
                      ......||..|+|||..
T Consensus       149 ~~~~~~gt~~y~aPE~~  165 (312)
T cd05585         149 KTNTFCGTPEYLAPELL  165 (312)
T ss_pred             ccccccCCcccCCHHHH
Confidence            33445799999999974

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.97  E-value=6.6e-31  Score=206.80  Aligned_cols=169  Identities=17%  Similarity=0.235  Sum_probs=144.4

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|.+.+.||+|+||.||++.. .+++.+|+|+++...   ......+.+|+.+++.+.|+||+++.+.+.+       .
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~-------~   73 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQD-------K   73 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEec-------C
Confidence            4799999999999999999995 468899999997542   2344567789999999999999999887765       5


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +..++||||+++++|.+++.... ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++
T Consensus        74 ~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~lH~---~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a  149 (330)
T cd05601          74 DNLYLVMEYQPGGDLLSLLNRYE-DQFDEDMAQFYLAELVLAIHSVHQ---MGYVHRDIKPENVLIDRTGHIKLADFGSA  149 (330)
T ss_pred             CeEEEEECCCCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH---CCeEcccCchHheEECCCCCEEeccCCCC
Confidence            68999999999999999997653 368899999999999999999999   79999999999999999999999999999


Q ss_pred             hhccccccc--ccccccccccCCCCC
Q 028725          180 LLAENAEKV--GHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~--~~~~~~~~~~aPE~~  203 (205)
                      .........  ....+|..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~gt~~y~aPE~~  175 (330)
T cd05601         150 ARLTANKMVNSKLPVGTPDYIAPEVL  175 (330)
T ss_pred             eECCCCCceeeecccCCccccCHHHh
Confidence            866544322  234789999999964

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.97  E-value=1.1e-30  Score=205.10  Aligned_cols=164  Identities=18%  Similarity=0.272  Sum_probs=137.2

Q ss_pred             ceeeccCcceEEEEEEec----CCcEEEEEEecccC----CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           29 SAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK----SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~----~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .+.||+|+||.||++...    +++.+|+|+++...    ......+.+|+.+++.++||||+++.+.+..       ++
T Consensus         1 ~~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~-------~~   73 (323)
T cd05584           1 LKVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQT-------GG   73 (323)
T ss_pred             CceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEec-------CC
Confidence            367999999999999852    47889999997532    2334567789999999999999999988765       56


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..+++|||+++++|.+.+....  .+.+.....++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++
T Consensus        74 ~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  148 (323)
T cd05584          74 KLYLILEYLSGGELFMHLEREG--IFMEDTACFYLSEISLALEHLHQ---QGIIYRDLKPENILLDAQGHVKLTDFGLCK  148 (323)
T ss_pred             eEEEEEeCCCCchHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCCEEEeeCcCCe
Confidence            8999999999999999987654  67788888999999999999999   799999999999999999999999999987


Q ss_pred             hccc-ccccccccccccccCCCCCC
Q 028725          181 LAEN-AEKVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       181 ~~~~-~~~~~~~~~~~~~~aPE~~~  204 (205)
                      .... ........||..|+|||...
T Consensus       149 ~~~~~~~~~~~~~gt~~y~aPE~~~  173 (323)
T cd05584         149 ESIHEGTVTHTFCGTIEYMAPEILM  173 (323)
T ss_pred             ecccCCCcccccCCCccccChhhcc
Confidence            4332 22333457999999999753

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.97  E-value=4.6e-31  Score=207.82  Aligned_cols=169  Identities=15%  Similarity=0.198  Sum_probs=143.0

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|++.+.||+|+||.||++... +++.+|+|++.+.   .......+.+|..++..+.|++|+++.+.+.+       .
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~-------~   73 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQD-------E   73 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEc-------C
Confidence            47999999999999999999954 5889999998653   22334557788999999999999999988765       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +..++||||+++|+|.+++.... ..+++.....++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++
T Consensus        74 ~~~~lv~Ey~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~~L~~lH~---~~iiHrDlkp~Nill~~~~~~kl~DfG~a  149 (331)
T cd05624          74 NYLYLVMDYYVGGDLLTLLSKFE-DRLPEDMARFYIAEMVLAIHSIHQ---LHYVHRDIKPDNVLLDMNGHIRLADFGSC  149 (331)
T ss_pred             CEEEEEEeCCCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCchHHEEEcCCCCEEEEeccce
Confidence            78999999999999999997532 368888899999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccc--cccccccccccCCCCC
Q 028725          180 LLAENAEK--VGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~--~~~~~~~~~~~aPE~~  203 (205)
                      ........  .....||..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~gt~~y~aPE~~  175 (331)
T cd05624         150 LKMNQDGTVQSSVAVGTPDYISPEIL  175 (331)
T ss_pred             eeccCCCceeeccccCCcccCCHHHH
Confidence            76654332  1234799999999954

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.97  E-value=1.2e-30  Score=201.59  Aligned_cols=169  Identities=15%  Similarity=0.313  Sum_probs=141.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|++.+.||.|+||.||+|... ++..||+|.++... ......+.+|+.+++.++||||+++.+.+..       ..
T Consensus         4 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-------~~   76 (288)
T cd07871           4 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHT-------ER   76 (288)
T ss_pred             cccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcC-------CC
Confidence            467999999999999999999954 68899999997553 2334567789999999999999999988765       56


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++++|++++ +|.+++.... ..+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||+++
T Consensus        77 ~~~lv~e~~~~-~l~~~l~~~~-~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~  151 (288)
T cd07871          77 CLTLVFEYLDS-DLKQYLDNCG-NLMSMHNVKIFMFQLLRGLSYCHK---RKILHRDLKPQNLLINEKGELKLADFGLAR  151 (288)
T ss_pred             eEEEEEeCCCc-CHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEECcCccee
Confidence            78999999975 8998886543 357888999999999999999999   799999999999999999999999999997


Q ss_pred             hccccc-ccccccccccccCCCCC
Q 028725          181 LAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ...... ......++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~y~aPE~~  175 (288)
T cd07871         152 AKSVPTKTYSNEVVTLWYRPPDVL  175 (288)
T ss_pred             eccCCCccccCceecccccChHHh
Confidence            554322 22335788999999964

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.97  E-value=6.2e-32  Score=216.18  Aligned_cols=177  Identities=21%  Similarity=0.396  Sum_probs=152.3

Q ss_pred             cccCHHHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccce
Q 028725           12 RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHC   89 (205)
Q Consensus        12 ~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~   89 (205)
                      ...+.++|....+...+++.||+|+||+||+|.|..  .||||+++...  +...+.|++|+.++++-+|.||+-++|+|
T Consensus       380 ~s~s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~  457 (678)
T KOG0193|consen  380 ASDSLEEWEIPPEEVLLGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGAC  457 (678)
T ss_pred             CCccccccccCHHHhhccceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhh
Confidence            345558888888999999999999999999999863  59999997764  34578899999999999999999999999


Q ss_pred             eeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC
Q 028725           90 FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL  169 (205)
Q Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~  169 (205)
                      ..        ..+.||+.++.|.+|..++...+ ..++..+...|++||++||.|||.   ++|+|||||..||++.+++
T Consensus       458 ~~--------p~~AIiTqwCeGsSLY~hlHv~e-tkfdm~~~idIAqQiaqGM~YLHA---K~IIHrDLKSnNIFl~~~~  525 (678)
T KOG0193|consen  458 MN--------PPLAIITQWCEGSSLYTHLHVQE-TKFDMNTTIDIAQQIAQGMDYLHA---KNIIHRDLKSNNIFLHEDL  525 (678)
T ss_pred             cC--------CceeeeehhccCchhhhhccchh-hhhhHHHHHHHHHHHHHhhhhhhh---hhhhhhhccccceEEccCC
Confidence            86        34599999999999999987554 578889999999999999999999   8999999999999999999


Q ss_pred             ceeEcCCCchhhcccc---cccccccccccccCCCC
Q 028725          170 VAKISSYNLPLLAENA---EKVGHVTPYSGSINPTN  202 (205)
Q Consensus       170 ~~~l~Dfg~a~~~~~~---~~~~~~~~~~~~~aPE~  202 (205)
                      +|+|.|||++......   .......+..-|||||.
T Consensus       526 kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEv  561 (678)
T KOG0193|consen  526 KVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEV  561 (678)
T ss_pred             cEEEecccceeeeeeeccccccCCCccchhhhcHHH
Confidence            9999999999655443   23344577778999995

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.2e-30  Score=201.36  Aligned_cols=169  Identities=18%  Similarity=0.249  Sum_probs=143.7

Q ss_pred             CCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           25 NFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      +|++.+.||+|+||.||++.. .+++.||+|.+....   ......+.+|+.+++.++||||+++.+.+..       .+
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~   73 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYET-------KD   73 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecC-------CC
Confidence            588899999999999999995 468899999996542   2223456789999999999999999888755       56


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..+++|||+++++|.+++.......+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        74 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~  150 (285)
T cd05605          74 ALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHR---ERIVYRDLKPENILLDDYGHIRISDLGLAV  150 (285)
T ss_pred             eEEEEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHH---CCcEecCCCHHHEEECCCCCEEEeeCCCce
Confidence            89999999999999988865443468999999999999999999999   799999999999999999999999999998


Q ss_pred             hcccccccccccccccccCCCCC
Q 028725          181 LAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ............++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~y~aPE~~  173 (285)
T cd05605         151 EIPEGETIRGRVGTVGYMAPEVV  173 (285)
T ss_pred             ecCCCCccccccCCCCccCcHHh
Confidence            76554444445789999999975

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=1.2e-31  Score=210.93  Aligned_cols=171  Identities=18%  Similarity=0.302  Sum_probs=153.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCc--CHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH--STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ..+|..++.+|+|+||.++..+++ +++.+++|.+......  ..+...+|+.++++++||||+.+.+.+..       +
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~-------~   75 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEE-------D   75 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhc-------C
Confidence            478999999999999999999965 4778999999766433  34467889999999999999999998876       4


Q ss_pred             Ce-EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725          100 SR-IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus       100 ~~-~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      +. ++|+|+|++||++.+.+...++..++++.++.|+.|++.|+.|||+   ..|+|||||+.||++.+++.++|+|||+
T Consensus        76 ~~~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~---~~iLHRDlK~~Nifltk~~~VkLgDfGl  152 (426)
T KOG0589|consen   76 GQLLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHE---NRVLHRDLKCANIFLTKDKKVKLGDFGL  152 (426)
T ss_pred             CceEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHh---hhhhcccchhhhhhccccCceeecchhh
Confidence            45 9999999999999999998777889999999999999999999998   6999999999999999999999999999


Q ss_pred             hhhccccc-ccccccccccccCCCCC
Q 028725          179 PLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      |+...+.. ......||+.||+||-.
T Consensus       153 aK~l~~~~~~a~tvvGTp~YmcPEil  178 (426)
T KOG0589|consen  153 AKILNPEDSLASTVVGTPYYMCPEIL  178 (426)
T ss_pred             hhhcCCchhhhheecCCCcccCHHHh
Confidence            99999876 77778999999999964

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.97  E-value=1.5e-30  Score=204.48  Aligned_cols=163  Identities=17%  Similarity=0.264  Sum_probs=136.7

Q ss_pred             eeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEE
Q 028725           30 AFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (205)
                      +.||+|+||.||++.. .+++.+|+|+++...   ......+.+|+++++.++||||+++.+.+..       ....++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~-------~~~~~lv   73 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQT-------HDRLCFV   73 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEc-------CCEEEEE
Confidence            4689999999999995 468999999997542   2334566789999999999999999887765       6689999


Q ss_pred             EeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc-
Q 028725          106 FEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN-  184 (205)
Q Consensus       106 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~-  184 (205)
                      |||+++++|..++....  .+++..+..++.|++.||.|||+.  .+++||||||+||++++++.++|+|||+++.... 
T Consensus        74 ~E~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~lH~~--~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~  149 (325)
T cd05594          74 MEYANGGELFFHLSRER--VFSEDRARFYGAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKD  149 (325)
T ss_pred             EeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhc--CCEEecCCCCCeEEECCCCCEEEecCCCCeecCCC
Confidence            99999999998887553  688999999999999999999963  5999999999999999999999999999875332 


Q ss_pred             ccccccccccccccCCCCC
Q 028725          185 AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 ~~~~~~~~~~~~~~aPE~~  203 (205)
                      ........||..|+|||..
T Consensus       150 ~~~~~~~~gt~~y~aPE~~  168 (325)
T cd05594         150 GATMKTFCGTPEYLAPEVL  168 (325)
T ss_pred             CcccccccCCcccCCHHHH
Confidence            2233345799999999964

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.97  E-value=8.6e-31  Score=207.55  Aligned_cols=171  Identities=17%  Similarity=0.314  Sum_probs=152.2

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCc---CHHHHHHHHHHHhccC-CCcccccccceeeeccc
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH---STRNFMHHIELISKLR-HCHLVSALGHCFECYFD   95 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~   95 (205)
                      .....|++.+.||+|.||.||.+..+ +|+.+|+|++++....   ....+.+|+.+|+.+. ||||+.+.+.+.+    
T Consensus        32 ~~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~----  107 (382)
T KOG0032|consen   32 DIKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFED----  107 (382)
T ss_pred             cccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEc----
Confidence            34567999999999999999999955 5999999999876433   4568999999999998 9999999999876    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC----Cce
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN----LVA  171 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~----~~~  171 (205)
                         ....++|||++.||.|.+.+...   .+++.....++.|++.++.|||+   .|++|||+||+|+++...    +.+
T Consensus       108 ---~~~~~lvmEL~~GGeLfd~i~~~---~~sE~da~~~~~~il~av~~lH~---~gvvHrDlKpEN~L~~~~~~~~~~i  178 (382)
T KOG0032|consen  108 ---PDSVYLVMELCEGGELFDRIVKK---HYSERDAAGIIRQILEAVKYLHS---LGVVHRDLKPENLLLASKDEGSGRI  178 (382)
T ss_pred             ---CCeEEEEEEecCCchHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHh---CCceeccCCHHHeeeccccCCCCcE
Confidence               66899999999999999999876   39999999999999999999999   899999999999999733    479


Q ss_pred             eEcCCCchhhcccccccccccccccccCCCCCC
Q 028725          172 KISSYNLPLLAENAEKVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~~  204 (205)
                      +++|||++............+||++|+|||...
T Consensus       179 k~~DFGla~~~~~~~~~~~~~Gtp~y~APEvl~  211 (382)
T KOG0032|consen  179 KLIDFGLAKFIKPGERLHTIVGTPEYVAPEVLG  211 (382)
T ss_pred             EEeeCCCceEccCCceEeeecCCccccCchhhc
Confidence            999999999998866777789999999999754

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.97  E-value=1e-30  Score=214.96  Aligned_cols=170  Identities=10%  Similarity=0.147  Sum_probs=143.3

Q ss_pred             CCCcceeeccCcceEEEEEEec-C-CcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-N-GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~-~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      .|.+.+.||+|++|.||.|... + +..|++|.+..........+.+|+.+++.++||||+++++.+..       .+..
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~-------~~~~  140 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKS-------DDKL  140 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEE-------CCEE
Confidence            4899999999999999999843 3 67788888765544455667789999999999999999998876       6789


Q ss_pred             EEEEeecCCCcHHHhhccC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          103 FLIFEYVPNGTLRSWISGH--AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ++||||+++++|.+.+...  ....+++..+..++.|++.||.|||+   .+|+||||||+||++++++.++|+|||+++
T Consensus       141 ~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~---~~ivHrDlkp~NIll~~~~~~kL~DFgla~  217 (478)
T PTZ00267        141 LLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHS---RKMMHRDLKSANIFLMPTGIIKLGDFGFSK  217 (478)
T ss_pred             EEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh---CCEEECCcCHHhEEECCCCcEEEEeCcCce
Confidence            9999999999999887532  22468889999999999999999999   799999999999999999999999999998


Q ss_pred             hcccccc---cccccccccccCCCCCC
Q 028725          181 LAENAEK---VGHVTPYSGSINPTNSA  204 (205)
Q Consensus       181 ~~~~~~~---~~~~~~~~~~~aPE~~~  204 (205)
                      .......   .....||.+|+|||+..
T Consensus       218 ~~~~~~~~~~~~~~~gt~~y~aPE~~~  244 (478)
T PTZ00267        218 QYSDSVSLDVASSFCGTPYYLAPELWE  244 (478)
T ss_pred             ecCCccccccccccCCCccccCHhHhC
Confidence            7654322   23357999999999753

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.97  E-value=3.5e-31  Score=211.76  Aligned_cols=176  Identities=20%  Similarity=0.363  Sum_probs=145.8

Q ss_pred             HHHHHHhcCCCcceeeccCcceEEEEEEecC--C---cEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccc
Q 028725           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLKN--G---TFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGH   88 (205)
Q Consensus        17 ~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~--~---~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~   88 (205)
                      ..|+..-++-...+.||+|+||.||+|....  +   ..||+|..+.+.   ......+.+|++++++++||||++++|+
T Consensus       150 ~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGV  229 (474)
T KOG0194|consen  150 QKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGV  229 (474)
T ss_pred             cccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence            4455555666777999999999999999543  2   238999988532   4456789999999999999999999999


Q ss_pred             eeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC
Q 028725           89 CFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN  168 (205)
Q Consensus        89 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~  168 (205)
                      +..       ...+++|||++.||+|.+++...+ ..++......++.+.+.||.|||+   .+++||||.++|+|++.+
T Consensus       230 a~~-------~~Pl~ivmEl~~gGsL~~~L~k~~-~~v~~~ek~~~~~~AA~Gl~YLh~---k~~IHRDIAARNcL~~~~  298 (474)
T KOG0194|consen  230 AVL-------EEPLMLVMELCNGGSLDDYLKKNK-KSLPTLEKLRFCYDAARGLEYLHS---KNCIHRDIAARNCLYSKK  298 (474)
T ss_pred             EcC-------CCccEEEEEecCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHhHHHHHHH---CCCcchhHhHHHheecCC
Confidence            987       678999999999999999999876 368999999999999999999999   799999999999999999


Q ss_pred             CceeEcCCCchhhcccccccc-cccccccccCCCCC
Q 028725          169 LVAKISSYNLPLLAENAEKVG-HVTPYSGSINPTNS  203 (205)
Q Consensus       169 ~~~~l~Dfg~a~~~~~~~~~~-~~~~~~~~~aPE~~  203 (205)
                      +.+||+|||+++....-.... ...--..|+|||..
T Consensus       299 ~~vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl  334 (474)
T KOG0194|consen  299 GVVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETL  334 (474)
T ss_pred             CeEEeCccccccCCcceeeccccccCcceecChhhh
Confidence            999999999998665211111 12344679999964

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.97  E-value=3.2e-30  Score=200.61  Aligned_cols=169  Identities=18%  Similarity=0.336  Sum_probs=140.8

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|++.+.||+|+||.||+|... +++.+|+|++.... ......+.+|+.+++.++||||+++.+++.+       ..
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-------~~   76 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHT-------KE   76 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEec-------CC
Confidence            478999999999999999999964 68899999997543 2334456789999999999999999988765       56


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++||||+. ++|.+++.... ..+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||++.
T Consensus        77 ~~~lv~e~~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~  151 (303)
T cd07869          77 TLTLVFEYVH-TDLCQYMDKHP-GGLHPENVKLFLFQLLRGLSYIHQ---RYILHRDLKPQNLLISDTGELKLADFGLAR  151 (303)
T ss_pred             eEEEEEECCC-cCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECCCCcce
Confidence            8999999995 58887776543 467888899999999999999999   799999999999999999999999999987


Q ss_pred             hccccc-ccccccccccccCCCCC
Q 028725          181 LAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ...... ......++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~y~aPE~~  175 (303)
T cd07869         152 AKSVPSHTYSNEVVTLWYRPPDVL  175 (303)
T ss_pred             eccCCCccCCCCcccCCCCChHHH
Confidence            544322 22335788999999963

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.97  E-value=3.1e-30  Score=203.13  Aligned_cols=169  Identities=14%  Similarity=0.261  Sum_probs=145.2

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|++.+.||+|+||.||++... ++..+|+|++.... ......+.+|+++++.++||||+++.+.+..       .+
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~   76 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-------DG   76 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE-------CC
Confidence            478999999999999999999954 68889999987553 2334678899999999999999999998876       56


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..+++|||+++++|.+++....  .+++..+..++.|++.||.|||+.  .+++||||||+||++++++.++|+|||++.
T Consensus        77 ~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~--~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  152 (331)
T cd06649          77 EISICMEHMDGGSLDQVLKEAK--RIPEEILGKVSIAVLRGLAYLREK--HQIMHRDVKPSNILVNSRGEIKLCDFGVSG  152 (331)
T ss_pred             EEEEEeecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHhhc--CCEEcCCCChhhEEEcCCCcEEEccCcccc
Confidence            8999999999999999987654  688899999999999999999973  369999999999999999999999999997


Q ss_pred             hcccccccccccccccccCCCCC
Q 028725          181 LAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ...... .....++..|+|||..
T Consensus       153 ~~~~~~-~~~~~g~~~y~aPE~~  174 (331)
T cd06649         153 QLIDSM-ANSFVGTRSYMSPERL  174 (331)
T ss_pred             cccccc-cccCCCCcCcCCHhHh
Confidence            664432 2345789999999975

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.97  E-value=3.2e-31  Score=215.35  Aligned_cols=178  Identities=17%  Similarity=0.330  Sum_probs=151.9

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc-CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ..|...+.||+|+||.||+|++ .+|+.||+|.+... .....+.+.+|+++++++.|+||++..++-.+... +.....
T Consensus        13 y~W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~-~~~~~~   91 (732)
T KOG4250|consen   13 YLWEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFL-GLVTRL   91 (732)
T ss_pred             cceeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCcccc-Cccccc
Confidence            4578888999999999999995 46999999999765 45667888999999999999999999987655222 334566


Q ss_pred             EEEEEeecCCCcHHHhhccC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC--CCC--ceeEcCC
Q 028725          102 IFLIFEYVPNGTLRSWISGH-AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD--QNL--VAKISSY  176 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~--~~~--~~~l~Df  176 (205)
                      ..++||||++|+|...+..= +-..+++..++.+...+..||.|||+   .+|+||||||.||++-  .+|  .-||+||
T Consensus        92 ~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrE---n~IvHRDlKP~NIvl~~Gedgq~IyKLtDf  168 (732)
T KOG4250|consen   92 PVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRE---NGIVHRDLKPGNIVLQIGEDGQSIYKLTDF  168 (732)
T ss_pred             ceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHH---cCceeccCCCCcEEEeecCCCceEEeeecc
Confidence            78999999999999998732 22369999999999999999999999   5999999999999884  334  4699999


Q ss_pred             CchhhcccccccccccccccccCCCCCCC
Q 028725          177 NLPLLAENAEKVGHVTPYSGSINPTNSAR  205 (205)
Q Consensus       177 g~a~~~~~~~~~~~~~~~~~~~aPE~~~~  205 (205)
                      |.|+-++++..-....||..|++||.+.|
T Consensus       169 G~Arel~d~s~~~S~vGT~~YLhPel~E~  197 (732)
T KOG4250|consen  169 GAARELDDNSLFTSLVGTEEYLHPELYER  197 (732)
T ss_pred             cccccCCCCCeeeeecCchhhcChHHHhh
Confidence            99999999998888999999999998764

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.97  E-value=2.5e-30  Score=203.05  Aligned_cols=167  Identities=20%  Similarity=0.297  Sum_probs=138.1

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCC-cccccccceeeecccCCCC
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHC-HLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~-~i~~~~~~~~~~~~~~~~~   99 (205)
                      +|++.+.||+|+||.||+|... +++.||+|++.+..   ......+..|..++..+.|+ +|+++.+.+..       .
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-------~   73 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT-------M   73 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEc-------C
Confidence            5889999999999999999954 57899999997542   33456677889999988765 56677766654       5


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +..++||||+++++|.+.+....  .+++.....++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++
T Consensus        74 ~~~~lv~E~~~~g~L~~~~~~~~--~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~Nill~~~~~~kL~Dfg~~  148 (324)
T cd05587          74 DRLYFVMEYVNGGDLMYHIQQVG--KFKEPHAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVMLDAEGHIKIADFGMC  148 (324)
T ss_pred             CEEEEEEcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEEcCCCCEEEeecCcc
Confidence            68999999999999999887653  67889999999999999999999   79999999999999999999999999998


Q ss_pred             hhcc-cccccccccccccccCCCCC
Q 028725          180 LLAE-NAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~-~~~~~~~~~~~~~~~aPE~~  203 (205)
                      .... .........||..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~gt~~y~aPE~~  173 (324)
T cd05587         149 KENIFGGKTTRTFCGTPDYIAPEII  173 (324)
T ss_pred             eecCCCCCceeeecCCccccChhhh
Confidence            6432 22233345799999999964

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.97  E-value=2.8e-30  Score=203.38  Aligned_cols=167  Identities=16%  Similarity=0.260  Sum_probs=140.4

Q ss_pred             CCCcceeeccCcceEEEEEEec----CCcEEEEEEecccC----CcCHHHHHHHHHHHhcc-CCCcccccccceeeeccc
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK----SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFD   95 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~----~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~   95 (205)
                      +|++.+.||+|+||.||++...    +++.+|+|++.+..    ....+.+..|+.++..+ .|++|+++.+.+..    
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~----   76 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQT----   76 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEec----
Confidence            5889999999999999998852    57899999996532    23345677899999999 48999999887754    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                         ....+++|||+++++|.+++..+.  .+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|
T Consensus        77 ---~~~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~~ivHrDlkp~Nili~~~~~~kl~D  148 (332)
T cd05614          77 ---EAKLHLILDYVSGGEMFTHLYQRD--NFSEDEVRFYSGEIILALEHLHK---LGIVYRDIKLENILLDSEGHVVLTD  148 (332)
T ss_pred             ---CCEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCcEecCCCHHHeEECCCCCEEEee
Confidence               568999999999999999987653  68899999999999999999999   7999999999999999999999999


Q ss_pred             CCchhhccccc--ccccccccccccCCCCC
Q 028725          176 YNLPLLAENAE--KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~--~~~~~~~~~~~~aPE~~  203 (205)
                      ||+++......  ......||..|+|||..
T Consensus       149 fG~~~~~~~~~~~~~~~~~gt~~y~aPE~~  178 (332)
T cd05614         149 FGLSKEFLSEEKERTYSFCGTIEYMAPEII  178 (332)
T ss_pred             CcCCccccccCCCccccccCCccccCHHHh
Confidence            99997654332  22345799999999964

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.97  E-value=2e-30  Score=203.12  Aligned_cols=162  Identities=19%  Similarity=0.282  Sum_probs=137.8

Q ss_pred             eeeccCcceEEEEEEe----cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEE
Q 028725           30 AFMGEGSKGQMYRGRL----KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~----~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (205)
                      +.||+|+||.||++..    .+|+.+|+|+++...  ......+.+|+.++++++||||+++.+.+..       ....+
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-------~~~~~   74 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQT-------EGKLY   74 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEc-------CCEEE
Confidence            6799999999999874    257899999997543  2234556789999999999999999988765       56899


Q ss_pred             EEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcc
Q 028725          104 LIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  183 (205)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~  183 (205)
                      +||||+.+++|.+.+....  .+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||++....
T Consensus        75 lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~  149 (318)
T cd05582          75 LILDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKESI  149 (318)
T ss_pred             EEEcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHeEECCCCcEEEeeccCCcccC
Confidence            9999999999999886543  68999999999999999999999   799999999999999999999999999997655


Q ss_pred             cc-cccccccccccccCCCCC
Q 028725          184 NA-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       184 ~~-~~~~~~~~~~~~~aPE~~  203 (205)
                      .. .......|+..|+|||..
T Consensus       150 ~~~~~~~~~~g~~~y~aPE~~  170 (318)
T cd05582         150 DHEKKAYSFCGTVEYMAPEVV  170 (318)
T ss_pred             CCCCceecccCChhhcCHHHH
Confidence            44 233445789999999964

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.97  E-value=4.8e-30  Score=197.96  Aligned_cols=168  Identities=17%  Similarity=0.278  Sum_probs=141.2

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ++|++.+.||+|+||.||+|... +++.+|+|+++...  ......+.+|+.+++.++||||+++.+.+..       .+
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~   73 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRR-------RG   73 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEec-------CC
Confidence            47999999999999999999965 58899999997542  3345667889999999999999999988865       56


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++||||++++.+..+....  ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++.
T Consensus        74 ~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~  148 (287)
T cd07848          74 KLYLVFEYVEKNMLELLEEMP--NGVPPEKVRSYIYQLIKAIHWCHK---NDIVHRDIKPENLLISHNDVLKLCDFGFAR  148 (287)
T ss_pred             EEEEEEecCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCcEEEeeccCcc
Confidence            899999999987766554332  368889999999999999999999   799999999999999999999999999998


Q ss_pred             hccccc--ccccccccccccCCCCC
Q 028725          181 LAENAE--KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~--~~~~~~~~~~~~aPE~~  203 (205)
                      ......  ......++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~~~y~aPE~~  173 (287)
T cd07848         149 NLSEGSNANYTEYVATRWYRSPELL  173 (287)
T ss_pred             cccccccccccccccccccCCcHHH
Confidence            765432  22335789999999964

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.97  E-value=3.8e-30  Score=202.07  Aligned_cols=165  Identities=22%  Similarity=0.339  Sum_probs=137.0

Q ss_pred             CCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHH---hccCCCcccccccceeeecccCCC
Q 028725           26 FDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELI---SKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l---~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      |++.+.||+|+||.||+|.. .+++.||+|+++...   ....+.+.+|..++   +.++||||+++.+.+..       
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~-------   73 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQT-------   73 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEc-------
Confidence            67889999999999999995 468999999997542   23345566666554   56689999999998765       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....++||||+++++|...+..   ..+++.....++.|++.||.|||+   .+++||||||+||++++++.++|+|||+
T Consensus        74 ~~~~~lv~E~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~al~~lH~---~~ivHrdlkp~Nill~~~~~~kL~Dfg~  147 (324)
T cd05589          74 EDHVCFVMEYAAGGDLMMHIHT---DVFSEPRAVFYAACVVLGLQYLHE---NKIVYRDLKLDNLLLDTEGFVKIADFGL  147 (324)
T ss_pred             CCEEEEEEcCCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeEecCCCHHHeEECCCCcEEeCcccC
Confidence            6789999999999999988764   368999999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccc-cccccccccccccCCCCC
Q 028725          179 PLLAENA-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~-~~~~~~~~~~~~~aPE~~  203 (205)
                      +...... .......|+..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~g~~~y~aPE~~  173 (324)
T cd05589         148 CKEGMGFGDRTSTFCGTPEFLAPEVL  173 (324)
T ss_pred             CccCCCCCCcccccccCccccCHhHh
Confidence            8754332 223345799999999964

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.97  E-value=3e-30  Score=203.02  Aligned_cols=162  Identities=19%  Similarity=0.276  Sum_probs=136.6

Q ss_pred             eeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||+|+||.||++... +++.||+|+++...   ......+..|..++..+ +||||+++.+.+.+       .+..++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~-------~~~~~l   73 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQT-------ESRLFF   73 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEc-------CCEEEE
Confidence            46899999999999954 68899999997642   23345677889998888 69999999988765       678999


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcc-
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE-  183 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~-  183 (205)
                      +|||+++++|.+++....  .+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||+++... 
T Consensus        74 v~e~~~~g~L~~~~~~~~--~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~  148 (329)
T cd05588          74 VIEFVSGGDLMFHMQRQR--KLPEEHARFYSAEISLALNFLHE---RGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIR  148 (329)
T ss_pred             EEeCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEECCCCCEEECcCcccccccc
Confidence            999999999998886553  68999999999999999999999   799999999999999999999999999987432 


Q ss_pred             cccccccccccccccCCCCC
Q 028725          184 NAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       184 ~~~~~~~~~~~~~~~aPE~~  203 (205)
                      .........||..|+|||..
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~  168 (329)
T cd05588         149 PGDTTSTFCGTPNYIAPEIL  168 (329)
T ss_pred             CCCccccccCCccccCHHHH
Confidence            22333446899999999964

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.97  E-value=2.6e-30  Score=203.65  Aligned_cols=169  Identities=16%  Similarity=0.205  Sum_probs=141.9

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|++.+.||+|+||.||++... +++.+|+|++.+.   .......+.+|..++..++|++|+++.+.+.+       .
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-------~   73 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQD-------E   73 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEec-------C
Confidence            47899999999999999999954 5788999998643   23334557789999999999999999887765       5


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +..++||||+++|+|.+++.... ..+++.....++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++
T Consensus        74 ~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~~~~qi~~al~~lH~---~~iiHrDlkp~Nili~~~~~~kL~DfG~a  149 (332)
T cd05623          74 NNLYLVMDYYVGGDLLTLLSKFE-DRLPEDMARFYLAEMVIAIDSVHQ---LHYVHRDIKPDNILMDMNGHIRLADFGSC  149 (332)
T ss_pred             CEEEEEEeccCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEECCCCCEEEeecchh
Confidence            68999999999999999997533 368888999999999999999999   79999999999999999999999999998


Q ss_pred             hhccccc--ccccccccccccCCCCC
Q 028725          180 LLAENAE--KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~--~~~~~~~~~~~~aPE~~  203 (205)
                      .......  ......||..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~gt~~y~aPE~~  175 (332)
T cd05623         150 LKLMEDGTVQSSVAVGTPDYISPEIL  175 (332)
T ss_pred             eecccCCcceecccccCccccCHHHH
Confidence            7554322  22235799999999964

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=6.3e-32  Score=209.01  Aligned_cols=170  Identities=16%  Similarity=0.304  Sum_probs=151.6

Q ss_pred             HHhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .....|...+.||+|.||.||+|. ..+++.||+|++..+. ..+.++..+|+.+|.+++++||.++++.++.       
T Consensus        10 ~~~~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~-------   82 (467)
T KOG0201|consen   10 DPELLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLK-------   82 (467)
T ss_pred             CcccccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheee-------
Confidence            334568888999999999999999 6679999999998874 4557889999999999999999999999987       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      +..+|++|||+.||++.+.++...  .+.+..+..+.++++.|+.|||.   .+.+|||||++||++..+|.++|+|||.
T Consensus        83 g~~LwiiMey~~gGsv~~lL~~~~--~~~E~~i~~ilre~l~~l~ylH~---~~kiHrDIKaanil~s~~g~vkl~DfgV  157 (467)
T KOG0201|consen   83 GTKLWIIMEYCGGGSVLDLLKSGN--ILDEFEIAVILREVLKGLDYLHS---EKKIHRDIKAANILLSESGDVKLADFGV  157 (467)
T ss_pred             cccHHHHHHHhcCcchhhhhccCC--CCccceeeeehHHHHHHhhhhhh---cceecccccccceeEeccCcEEEEecce
Confidence            788999999999999999998764  45788888899999999999999   7999999999999999999999999999


Q ss_pred             hhhccccc-ccccccccccccCCCC
Q 028725          179 PLLAENAE-KVGHVTPYSGSINPTN  202 (205)
Q Consensus       179 a~~~~~~~-~~~~~~~~~~~~aPE~  202 (205)
                      +...++.. ......||+.|||||.
T Consensus       158 a~ql~~~~~rr~tfvGTPfwMAPEV  182 (467)
T KOG0201|consen  158 AGQLTNTVKRRKTFVGTPFWMAPEV  182 (467)
T ss_pred             eeeeechhhccccccccccccchhh
Confidence            98777654 3367899999999995

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-30  Score=202.32  Aligned_cols=171  Identities=20%  Similarity=0.397  Sum_probs=144.5

Q ss_pred             hcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhcc--CCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKL--RHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l--~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ..+-.+.+.||+|.||+||+|.|+ |..||||++.   ..+..++++|.++.+.+  +|+||+.+++.-..   +..+-.
T Consensus       210 arqI~L~e~IGkGRyGEVwrG~wr-Ge~VAVKiF~---srdE~SWfrEtEIYqTvmLRHENILgFIaaD~~---~~gs~T  282 (513)
T KOG2052|consen  210 ARQIVLQEIIGKGRFGEVWRGRWR-GEDVAVKIFS---SRDERSWFRETEIYQTVMLRHENILGFIAADNK---DNGSWT  282 (513)
T ss_pred             hheeEEEEEecCccccceeecccc-CCceEEEEec---ccchhhhhhHHHHHHHHHhccchhhhhhhcccc---CCCceE
Confidence            456788999999999999999998 8999999997   55677889999988875  89999999875432   112246


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----CCceeecCCccccEEeCCCCceeEcC
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGI-----VPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~-----~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                      ++|||++|.+.|+|.|++...   .++....+.++..++.||.+||...     +..|.|||||..||+|.+++.+.|+|
T Consensus       283 QLwLvTdYHe~GSL~DyL~r~---tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IAD  359 (513)
T KOG2052|consen  283 QLWLVTDYHEHGSLYDYLNRN---TVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIAD  359 (513)
T ss_pred             EEEEeeecccCCcHHHHHhhc---cCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEee
Confidence            799999999999999999874   7899999999999999999999421     35789999999999999999999999


Q ss_pred             CCchhhcccc-----cccccccccccccCCCCC
Q 028725          176 YNLPLLAENA-----EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~-----~~~~~~~~~~~~~aPE~~  203 (205)
                      +|+|-...+.     -..+..+||..|||||..
T Consensus       360 LGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvL  392 (513)
T KOG2052|consen  360 LGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVL  392 (513)
T ss_pred             ceeeEEecccCCcccCCCCCccceeeccChHHh
Confidence            9999654443     255667999999999975

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.97  E-value=7.1e-30  Score=197.31  Aligned_cols=174  Identities=19%  Similarity=0.325  Sum_probs=140.4

Q ss_pred             cCCCcceeeccCcceEEEEEEe-c-CCcEEEEEEecccC--CcCHHHHHHHHHHHhcc---CCCcccccccceeeecccC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-K-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKL---RHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l---~~~~i~~~~~~~~~~~~~~   96 (205)
                      ++|++.+.||+|+||.||+|.. . ++..||+|.++...  ......+.+|+.+++.+   +||||+++.+++.....  
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~--   78 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT--   78 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccC--
Confidence            4799999999999999999985 3 36789999986543  22234455677666655   69999999998753211  


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                      ......++++|++. ++|.+++.......+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+||
T Consensus        79 ~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~---~~iiH~dlkp~Nil~~~~~~~kl~Df  154 (290)
T cd07862          79 DRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADF  154 (290)
T ss_pred             CCCCcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEEcCCCCEEEccc
Confidence            22456899999996 599999876554568999999999999999999999   79999999999999999999999999


Q ss_pred             CchhhcccccccccccccccccCCCCC
Q 028725          177 NLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |+++............++..|+|||..
T Consensus       155 g~~~~~~~~~~~~~~~~~~~y~aPE~~  181 (290)
T cd07862         155 GLARIYSFQMALTSVVVTLWYRAPEVL  181 (290)
T ss_pred             cceEeccCCcccccccccccccChHHH
Confidence            999876655444556889999999964

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=5.8e-31  Score=199.45  Aligned_cols=174  Identities=18%  Similarity=0.308  Sum_probs=149.0

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEec--ccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLK--MKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~--~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .....|...+.||+|+||.|+.+.. .+|+.||+|.+.  -+.....+...+|+.+|+.++|+||+.+.+++..  ....
T Consensus        19 ~i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p--~~~~   96 (359)
T KOG0660|consen   19 EIPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRP--PSRD   96 (359)
T ss_pred             eccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccc--cccc
Confidence            4456677789999999999999994 579999999997  3456677888999999999999999999887765  1223


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      ..+.+|+|+|.+ +.+|.+.++.+.  .++......+++|++.||.|+|+   .+++||||||+|++++.+...||+|||
T Consensus        97 ~f~DvYiV~elM-etDL~~iik~~~--~L~d~H~q~f~YQiLrgLKyiHS---AnViHRDLKPsNll~n~~c~lKI~DFG  170 (359)
T KOG0660|consen   97 KFNDVYLVFELM-ETDLHQIIKSQQ--DLTDDHAQYFLYQILRGLKYIHS---ANVIHRDLKPSNLLLNADCDLKICDFG  170 (359)
T ss_pred             ccceeEEehhHH-hhHHHHHHHcCc--cccHHHHHHHHHHHHHhcchhhc---ccccccccchhheeeccCCCEEecccc
Confidence            357899999999 559999988764  58999999999999999999999   799999999999999999999999999


Q ss_pred             chhhccc---ccccccccccccccCCCC
Q 028725          178 LPLLAEN---AEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       178 ~a~~~~~---~~~~~~~~~~~~~~aPE~  202 (205)
                      +|+...+   ...-.....|.+|.|||.
T Consensus       171 LAR~~~~~~~~~~mTeYVaTRWYRAPEl  198 (359)
T KOG0660|consen  171 LARYLDKFFEDGFMTEYVATRWYRAPEL  198 (359)
T ss_pred             ceeeccccCcccchhcceeeeeecCHHH
Confidence            9998874   344455799999999995

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.97  E-value=3.6e-30  Score=202.57  Aligned_cols=162  Identities=20%  Similarity=0.288  Sum_probs=135.7

Q ss_pred             eeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||+|+||.||+|... +++.+|+|++++..   ......+.+|..++.++ +||||+++.+.+..       .+..++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~-------~~~~~l   73 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT-------ESRLFF   73 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEe-------CCEEEE
Confidence            46899999999999954 58899999997642   23345567788887766 79999999998765       678999


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ||||+++++|...+....  .+++.....++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++....
T Consensus        74 v~E~~~~~~L~~~~~~~~--~l~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~  148 (329)
T cd05618          74 VIEYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR  148 (329)
T ss_pred             EEeCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEECCCCCEEEeeCCccccccC
Confidence            999999999998886553  68899999999999999999999   7999999999999999999999999999875432


Q ss_pred             -ccccccccccccccCCCCC
Q 028725          185 -AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 -~~~~~~~~~~~~~~aPE~~  203 (205)
                       ........||..|+|||..
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~  168 (329)
T cd05618         149 PGDTTSTFCGTPNYIAPEIL  168 (329)
T ss_pred             CCCccccccCCccccCHHHH
Confidence             2233445799999999964

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.97  E-value=3.9e-30  Score=201.87  Aligned_cols=167  Identities=20%  Similarity=0.285  Sum_probs=138.2

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCCC
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      +|++.+.||+|+||.||+|... +++.+|+|++++..   .........|..++..+ .|++|+++.+.+..       .
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-------~   73 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQT-------M   73 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEec-------C
Confidence            5888999999999999999954 57899999997542   22334556677777776 57888888887755       5


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +..++||||+++++|.+.+....  .+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||++
T Consensus        74 ~~~~lv~E~~~~g~L~~~~~~~~--~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~kL~DfG~~  148 (323)
T cd05616          74 DRLYFVMEYVNGGDLMYQIQQVG--RFKEPHAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVMLDSEGHIKIADFGMC  148 (323)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCEEecCCCHHHeEECCCCcEEEccCCCc
Confidence            68999999999999999887654  68889999999999999999999   79999999999999999999999999998


Q ss_pred             hhccc-ccccccccccccccCCCCC
Q 028725          180 LLAEN-AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~-~~~~~~~~~~~~~~aPE~~  203 (205)
                      +.... ........||..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~gt~~y~aPE~~  173 (323)
T cd05616         149 KENMWDGVTTKTFCGTPDYIAPEII  173 (323)
T ss_pred             eecCCCCCccccCCCChhhcCHHHh
Confidence            75432 2233445799999999964

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.97  E-value=4.9e-30  Score=202.17  Aligned_cols=169  Identities=13%  Similarity=0.270  Sum_probs=144.5

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|++.+.||+|+||.||++... ++..+++|.+.... ......+.+|+++++.++||||+++.+.+..       .+
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~   76 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-------DG   76 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEE-------CC
Confidence            478999999999999999999965 58889999887542 2334568899999999999999999998876       66


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..+++|||+++++|.+++....  .+++.....++.+++.+|.|||+.  .+++|+||||+||++++++.++|+|||++.
T Consensus        77 ~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~l~~~l~~lH~~--~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~  152 (333)
T cd06650          77 EISICMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSG  152 (333)
T ss_pred             EEEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhc--CCEEecCCChhhEEEcCCCCEEEeeCCcch
Confidence            8999999999999999987654  678888999999999999999973  479999999999999999999999999997


Q ss_pred             hcccccccccccccccccCCCCC
Q 028725          181 LAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ...... .....++..|+|||+.
T Consensus       153 ~~~~~~-~~~~~~~~~y~aPE~~  174 (333)
T cd06650         153 QLIDSM-ANSFVGTRSYMSPERL  174 (333)
T ss_pred             hhhhhc-cccCCCCccccCHHHh
Confidence            654432 2335789999999975

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.1e-31  Score=214.79  Aligned_cols=165  Identities=18%  Similarity=0.349  Sum_probs=145.4

Q ss_pred             hcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccCCcCH---HHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHST---RNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~---~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ...|..++.||.|+||.||-|. ..+...||||.+.....+..   .++..|+.+|+++.|||++.+-|+++.       
T Consensus        25 Eklf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLr-------   97 (948)
T KOG0577|consen   25 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLR-------   97 (948)
T ss_pred             HHHHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeec-------
Confidence            3458889999999999999999 56788999999977654443   456789999999999999999999887       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....|+|||||-| +..+++.... .++.+..+..|..+.+.||.|||+   .+.||||||+.||++++.|.|||+|||.
T Consensus        98 e~TaWLVMEYClG-SAsDlleVhk-KplqEvEIAAi~~gaL~gLaYLHS---~~~IHRDiKAGNILLse~g~VKLaDFGS  172 (948)
T KOG0577|consen   98 EHTAWLVMEYCLG-SASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHS---HNRIHRDIKAGNILLSEPGLVKLADFGS  172 (948)
T ss_pred             cchHHHHHHHHhc-cHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHH---hhHHhhhccccceEecCCCeeeeccccc
Confidence            6789999999955 9999988654 589999999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      |.+..+   .+..+||++|||||.
T Consensus       173 Asi~~P---AnsFvGTPywMAPEV  193 (948)
T KOG0577|consen  173 ASIMAP---ANSFVGTPYWMAPEV  193 (948)
T ss_pred             hhhcCc---hhcccCCccccchhH
Confidence            987775   344899999999995

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.97  E-value=5.5e-30  Score=199.33  Aligned_cols=171  Identities=19%  Similarity=0.389  Sum_probs=138.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEecC-----------------CcEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKN-----------------GTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVS   84 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~-----------------~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~   84 (205)
                      .++|++.+.||+|+||.||+|.+.+                 +..||+|.+..... .....+.+|+.++..++||||++
T Consensus         4 ~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~   83 (304)
T cd05096           4 RGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIR   83 (304)
T ss_pred             hhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeE
Confidence            3679999999999999999997532                 33699999875432 23456889999999999999999


Q ss_pred             cccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCC-----------------CCCCCHHHHHHHHHHHHHHHHHhhc
Q 028725           85 ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA-----------------WQSLTWTQRISAAIGVARGIQFLHT  147 (205)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-----------------~~~~~~~~~~~i~~~i~~~l~~lh~  147 (205)
                      +++.+.+       .+..+++|||+++++|.+++....                 ...+++..++.++.|++.||.|||+
T Consensus        84 ~~~~~~~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~  156 (304)
T cd05096          84 LLGVCVD-------EDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSS  156 (304)
T ss_pred             EEEEEec-------CCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            9998865       567899999999999999885321                 1236778889999999999999999


Q ss_pred             CCCCceeecCCccccEEeCCCCceeEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          148 GIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       148 ~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                         .+++||||||+||++++++.++|+|||+++.......   .....++..|+|||..
T Consensus       157 ---~~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  212 (304)
T cd05096         157 ---LNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECI  212 (304)
T ss_pred             ---CCccccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHH
Confidence               7999999999999999999999999999976543321   1223457789999963

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.97  E-value=6.8e-30  Score=201.41  Aligned_cols=171  Identities=20%  Similarity=0.282  Sum_probs=140.4

Q ss_pred             CCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc--CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK--KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +|++.+.||+|+||.||+|.. .++..||+|.+...  .......+.+|+.+++.++||||+++.+++.....  .....
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~--~~~~~   78 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSR--REFKD   78 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCC--CCCce
Confidence            588999999999999999995 46899999998643  22344567889999999999999999988754211  12246


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .+++|||+. ++|.+++....  .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++.
T Consensus        79 ~~lv~e~~~-~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~  152 (338)
T cd07859          79 IYVVFELME-SDLHQVIKAND--DLTPEHHQFFLYQLLRALKYIHT---ANVFHRDLKPKNILANADCKLKICDFGLARV  152 (338)
T ss_pred             EEEEEecCC-CCHHHHHHhcc--cCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCcEEEccCccccc
Confidence            899999995 58999887654  68899999999999999999999   7999999999999999999999999999976


Q ss_pred             cccccc----cccccccccccCCCCC
Q 028725          182 AENAEK----VGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~----~~~~~~~~~~~aPE~~  203 (205)
                      ......    .....++..|+|||..
T Consensus       153 ~~~~~~~~~~~~~~~~t~~y~aPE~~  178 (338)
T cd07859         153 AFNDTPTAIFWTDYVATRWYRAPELC  178 (338)
T ss_pred             cccccCccccccCCCCCCCcCCHHHH
Confidence            543221    1235789999999963

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.97  E-value=4.2e-30  Score=201.48  Aligned_cols=162  Identities=22%  Similarity=0.328  Sum_probs=135.6

Q ss_pred             eeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||+|+||.||+|... +++.||+|+++..   .......+..|..++..+ .||||+++.+.+..       .+..++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~-------~~~~~i   73 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQT-------PDRLFF   73 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEc-------CCEEEE
Confidence            46899999999999954 5889999999754   233455667788888776 69999999988765       678999


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ||||+++++|.+++....  .+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||+++....
T Consensus        74 v~Ey~~~g~L~~~i~~~~--~l~~~~~~~~~~ql~~~L~~lH~---~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~  148 (320)
T cd05590          74 VMEFVNGGDLMFHIQKSR--RFDEARARFYAAEITSALMFLHD---KGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIF  148 (320)
T ss_pred             EEcCCCCchHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCc
Confidence            999999999999887654  68899999999999999999999   7999999999999999999999999999875332


Q ss_pred             -ccccccccccccccCCCCC
Q 028725          185 -AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 -~~~~~~~~~~~~~~aPE~~  203 (205)
                       ........||..|+|||..
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~  168 (320)
T cd05590         149 NGKTTSTFCGTPDYIAPEIL  168 (320)
T ss_pred             CCCcccccccCccccCHHHH
Confidence             2233445799999999964

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.97  E-value=8.9e-30  Score=196.54  Aligned_cols=169  Identities=18%  Similarity=0.239  Sum_probs=143.1

Q ss_pred             CCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           25 NFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .|+..+.||+|+||+||.+.. .+++.+|+|.+....   ......+.+|+.+++.++|++++++.+.+..       ++
T Consensus         1 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~-------~~   73 (285)
T cd05632           1 TFRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYET-------KD   73 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEec-------CC
Confidence            477889999999999999995 468899999986543   2223456789999999999999999887755       66


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++++||+.+++|.+++.......+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||++.
T Consensus        74 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~---~~iiH~dikp~Nili~~~~~~kl~Dfg~~~  150 (285)
T cd05632          74 ALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHR---ENTVYRDLKPENILLDDYGHIRISDLGLAV  150 (285)
T ss_pred             EEEEEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCCHHHEEECCCCCEEEecCCcce
Confidence            89999999999999988865443468999999999999999999999   799999999999999999999999999997


Q ss_pred             hcccccccccccccccccCCCCC
Q 028725          181 LAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ............++..|+|||..
T Consensus       151 ~~~~~~~~~~~~g~~~~~aPE~~  173 (285)
T cd05632         151 KIPEGESIRGRVGTVGYMAPEVL  173 (285)
T ss_pred             ecCCCCcccCCCCCcCccChHHh
Confidence            66544444456889999999974

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.97  E-value=3e-31  Score=195.02  Aligned_cols=170  Identities=19%  Similarity=0.370  Sum_probs=149.4

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC----CcCH----HHHHHHHHHHhcc-CCCccccccccee
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK----SHST----RNFMHHIELISKL-RHCHLVSALGHCF   90 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~----~~~~----~~~~~e~~~l~~l-~~~~i~~~~~~~~   90 (205)
                      ...++|...+.+|.|..+.|..+.+ .+|+.+++|++....    ....    +.-.+|+.+|+++ .||+|+++.+++.
T Consensus        14 ~fy~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~ye   93 (411)
T KOG0599|consen   14 GFYAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYE   93 (411)
T ss_pred             hHHhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeecc
Confidence            4567899999999999999999984 578999999986532    1122    2345688999998 5999999999886


Q ss_pred             eecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc
Q 028725           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  170 (205)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~  170 (205)
                      .       ....++|+|.++.|.|.+++....  .+++.....|++|+..|+.|||.   .+|+||||||+||++|++.+
T Consensus        94 s-------~sF~FlVFdl~prGELFDyLts~V--tlSEK~tR~iMrqlfegVeylHa---~~IVHRDLKpENILlddn~~  161 (411)
T KOG0599|consen   94 S-------DAFVFLVFDLMPRGELFDYLTSKV--TLSEKETRRIMRQLFEGVEYLHA---RNIVHRDLKPENILLDDNMN  161 (411)
T ss_pred             C-------cchhhhhhhhcccchHHHHhhhhe--eecHHHHHHHHHHHHHHHHHHHH---hhhhhcccChhheeeccccc
Confidence            5       667899999999999999998664  78999999999999999999999   79999999999999999999


Q ss_pred             eeEcCCCchhhcccccccccccccccccCCCC
Q 028725          171 AKISSYNLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       171 ~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      ++|+|||+|+.+..+++....+||++|+|||-
T Consensus       162 i~isDFGFa~~l~~GekLrelCGTPgYLAPEt  193 (411)
T KOG0599|consen  162 IKISDFGFACQLEPGEKLRELCGTPGYLAPET  193 (411)
T ss_pred             eEEeccceeeccCCchhHHHhcCCCcccChhh
Confidence            99999999999999999999999999999995

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.97  E-value=6.5e-30  Score=200.63  Aligned_cols=162  Identities=20%  Similarity=0.326  Sum_probs=133.0

Q ss_pred             eeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHH-HHhccCCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIE-LISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~-~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||+|+||.||+|... +|+.||+|++....   ......+..|.. +++.++||||+++.+.+..       .+..++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~-------~~~~~l   73 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQT-------ADKLYF   73 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEe-------CCEEEE
Confidence            46899999999999954 68999999996542   222334444544 5678899999999887765       668999


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ||||+++++|...+....  .+++.....++.|++.||.|||+   .+++||||||+||++++++.++|+|||++.....
T Consensus        74 v~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~  148 (323)
T cd05575          74 VLDYVNGGELFFHLQRER--SFPEPRARFYAAEIASALGYLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIE  148 (323)
T ss_pred             EEcCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHeEECCCCcEEEeccCCCccccc
Confidence            999999999999887653  68889999999999999999999   7999999999999999999999999999875433


Q ss_pred             c-cccccccccccccCCCCC
Q 028725          185 A-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 ~-~~~~~~~~~~~~~aPE~~  203 (205)
                      . .......||..|+|||..
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~  168 (323)
T cd05575         149 HSKTTSTFCGTPEYLAPEVL  168 (323)
T ss_pred             CCCccccccCChhhcChhhh
Confidence            2 233345799999999974

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.97  E-value=7.3e-30  Score=199.80  Aligned_cols=162  Identities=23%  Similarity=0.345  Sum_probs=133.6

Q ss_pred             eeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhc-cCCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISK-LRHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||+|+||.||+|... +++.||+|+++...   .........|..++.. .+||||+++.+.+..       ....++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~-------~~~~~l   73 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQT-------KEHLFF   73 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEc-------CCEEEE
Confidence            46899999999999954 58899999997542   2334455566666664 479999999987755       568999


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ||||+++++|.+++....  .+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||+++....
T Consensus        74 v~e~~~gg~L~~~~~~~~--~~~~~~~~~~~~qi~~al~~LH~---~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~  148 (316)
T cd05592          74 VMEYLNGGDLMFHIQSSG--RFDEARARFYAAEIICGLQFLHK---KGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMN  148 (316)
T ss_pred             EEcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCEEeCCCCHHHeEECCCCCEEEccCcCCeECCC
Confidence            999999999999887654  68889999999999999999999   7999999999999999999999999999975433


Q ss_pred             -ccccccccccccccCCCCC
Q 028725          185 -AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 -~~~~~~~~~~~~~~aPE~~  203 (205)
                       ........||..|+|||..
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~  168 (316)
T cd05592         149 GEGKASTFCGTPDYIAPEIL  168 (316)
T ss_pred             CCCccccccCCccccCHHHH
Confidence             2333445799999999964

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.97  E-value=7.3e-30  Score=200.19  Aligned_cols=162  Identities=22%  Similarity=0.327  Sum_probs=132.5

Q ss_pred             eeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHH-HHHhccCCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHI-ELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~-~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||+|+||.||+|... +++.+|+|++.+..   ......+..|. .+++.++||||+++.+.+.+       .+..++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~-------~~~~~l   73 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQT-------AEKLYF   73 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEc-------CCEEEE
Confidence            46899999999999964 58899999996542   22233444554 46788999999999887765       668999


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      +|||+++++|...+....  .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++....
T Consensus        74 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~L~~lH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~  148 (321)
T cd05603          74 VLDYVNGGELFFHLQRER--CFLEPRARFYAAEVASAIGYLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVE  148 (321)
T ss_pred             EEcCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEccCCCCccCCC
Confidence            999999999998887543  67888899999999999999999   7999999999999999999999999999875432


Q ss_pred             -ccccccccccccccCCCCC
Q 028725          185 -AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 -~~~~~~~~~~~~~~aPE~~  203 (205)
                       ........+|..|+|||..
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~  168 (321)
T cd05603         149 PEETTSTFCGTPEYLAPEVL  168 (321)
T ss_pred             CCCccccccCCcccCCHHHh
Confidence             2233445789999999964

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=4.7e-31  Score=211.84  Aligned_cols=168  Identities=18%  Similarity=0.300  Sum_probs=142.4

Q ss_pred             CcceeeccCcceEEEEEEe-cCCcEEEEEEeccc----CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           27 DTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK----KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        27 ~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~----~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +....||+|+|.+||+|.. .+|..||.-.++..    .+...+.|..|+.+|+.|+||||++++..+.+     .....
T Consensus        43 k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d-----~~n~~  117 (632)
T KOG0584|consen   43 KFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVD-----TDNKT  117 (632)
T ss_pred             ehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheec-----CCCce
Confidence            5677899999999999994 45888875444332    34456889999999999999999999998876     23456


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC-CCCceeEcCCCchh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD-QNLVAKISSYNLPL  180 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~-~~~~~~l~Dfg~a~  180 (205)
                      +-+|+|.+..|+|+.+..+.+  .++...+..|++||++||.|||.. ..+|+|||||.+||+|+ .-|.+||+|+|+|.
T Consensus       118 in~iTEL~TSGtLr~Y~kk~~--~vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAt  194 (632)
T KOG0584|consen  118 INFITELFTSGTLREYRKKHR--RVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLAT  194 (632)
T ss_pred             eeeeeecccCCcHHHHHHHhc--cCCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhHHH
Confidence            889999999999999998775  677788999999999999999984 36999999999999998 66999999999999


Q ss_pred             hcccccccccccccccccCCCCC
Q 028725          181 LAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ....+.-. ...||++|||||-|
T Consensus       195 l~r~s~ak-svIGTPEFMAPEmY  216 (632)
T KOG0584|consen  195 LLRKSHAK-SVIGTPEFMAPEMY  216 (632)
T ss_pred             Hhhccccc-eeccCccccChHHH
Confidence            88875544 38999999999976

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.97  E-value=6e-30  Score=201.00  Aligned_cols=162  Identities=18%  Similarity=0.288  Sum_probs=133.0

Q ss_pred             eeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHH-HHhccCCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIE-LISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~-~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||+|+||.||+|.. .+|+.+|+|++....   ......+..|.. +++.++||||+++.+.+..       .+..++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~-------~~~~~l   73 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQT-------TEKLYF   73 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEec-------CCEEEE
Confidence            4689999999999995 468999999996542   223334445544 5677899999999887765       678999


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      +|||+++++|...+....  .+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||+++....
T Consensus        74 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~lH~---~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~  148 (325)
T cd05604          74 VLDFVNGGELFFHLQRER--SFPEPRARFYAAEIASALGYLHS---INIVYRDLKPENILLDSQGHVVLTDFGLCKEGIA  148 (325)
T ss_pred             EEcCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEEeecCCcccCCC
Confidence            999999999998887553  68899999999999999999999   7999999999999999999999999999875432


Q ss_pred             -ccccccccccccccCCCCC
Q 028725          185 -AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 -~~~~~~~~~~~~~~aPE~~  203 (205)
                       ........|+..|+|||..
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~  168 (325)
T cd05604         149 QSDTTTTFCGTPEYLAPEVI  168 (325)
T ss_pred             CCCCcccccCChhhCCHHHH
Confidence             2233445799999999974

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=8.7e-30  Score=204.54  Aligned_cols=162  Identities=13%  Similarity=0.178  Sum_probs=137.4

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      ++|++.+.||+|+||.||+|.. .+++.||+|...      ...+.+|+.+++.++||||+++.+.+..       ....
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~------~~~~~~E~~il~~l~HpnIv~~~~~~~~-------~~~~  158 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ------RGGTATEAHILRAINHPSIIQLKGTFTY-------NKFT  158 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh------hhhhHHHHHHHHhCCCCCCCCEeEEEEE-------CCee
Confidence            5799999999999999999994 568899999654      2346789999999999999999998765       5678


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      ++++|++. ++|.+++....  .+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||+++..
T Consensus       159 ~lv~e~~~-~~L~~~l~~~~--~l~~~~~~~i~~qi~~aL~ylH~---~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~  232 (391)
T PHA03212        159 CLILPRYK-TDLYCYLAAKR--NIAICDILAIERSVLRAIQYLHE---NRIIHRDIKAENIFINHPGDVCLGDFGAACFP  232 (391)
T ss_pred             EEEEecCC-CCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChHhEEEcCCCCEEEEeCCccccc
Confidence            99999995 58888876553  67889999999999999999999   79999999999999999999999999999754


Q ss_pred             ccc--cccccccccccccCCCCCC
Q 028725          183 ENA--EKVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       183 ~~~--~~~~~~~~~~~~~aPE~~~  204 (205)
                      ...  .......||..|+|||...
T Consensus       233 ~~~~~~~~~~~~gt~~y~aPE~~~  256 (391)
T PHA03212        233 VDINANKYYGWAGTIATNAPELLA  256 (391)
T ss_pred             ccccccccccccCccCCCChhhhc
Confidence            332  2233458999999999753

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.97  E-value=4.6e-30  Score=203.81  Aligned_cols=165  Identities=15%  Similarity=0.283  Sum_probs=138.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ..+|+..+.||+|+||.||+|... +++.||+|++..... .....+.+|+.+++.++|+||+++.+++..       .+
T Consensus        73 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~  145 (353)
T PLN00034         73 LSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDH-------NG  145 (353)
T ss_pred             HHHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEecc-------CC
Confidence            456788899999999999999954 689999999965432 334678899999999999999999998765       66


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++++||+.+++|.+..      ...+..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||+++
T Consensus       146 ~~~lv~e~~~~~~L~~~~------~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~kL~DfG~~~  216 (353)
T PLN00034        146 EIQVLLEFMDGGSLEGTH------IADEQFLADVARQILSGIAYLHR---RHIVHRDIKPSNLLINSAKNVKIADFGVSR  216 (353)
T ss_pred             eEEEEEecCCCCcccccc------cCCHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCEEEcccccce
Confidence            899999999999986532      34567788899999999999999   799999999999999999999999999998


Q ss_pred             hccccc-ccccccccccccCCCCC
Q 028725          181 LAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ...... ......||..|+|||..
T Consensus       217 ~~~~~~~~~~~~~gt~~y~aPE~~  240 (353)
T PLN00034        217 ILAQTMDPCNSSVGTIAYMSPERI  240 (353)
T ss_pred             ecccccccccccccCccccCcccc
Confidence            765432 22345799999999974

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.97  E-value=6.6e-30  Score=200.43  Aligned_cols=162  Identities=23%  Similarity=0.283  Sum_probs=135.2

Q ss_pred             eeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||+|+||.||+|... +++.||+|+++...   ......+..|.+++..+ +||||+++.+.+..       ....++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~-------~~~~~l   73 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQT-------KDRLFF   73 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEc-------CCeEEE
Confidence            46899999999999964 57899999997542   33445567788888765 79999999998865       568999


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ||||+++++|...+....  .+++.....++.|++.||.|||+   .+++||||||+||++++++.++|+|||++.....
T Consensus        74 v~E~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~  148 (321)
T cd05591          74 VMEYVNGGDLMFQIQRSR--KFDEPRSRFYAAEVTLALMFLHR---HGVIYRDLKLDNILLDAEGHCKLADFGMCKEGIL  148 (321)
T ss_pred             EEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEEeecccceeccc
Confidence            999999999998887553  68889999999999999999999   7999999999999999999999999999875433


Q ss_pred             c-cccccccccccccCCCCC
Q 028725          185 A-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 ~-~~~~~~~~~~~~~aPE~~  203 (205)
                      . .......||..|+|||..
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~  168 (321)
T cd05591         149 NGVTTTTFCGTPDYIAPEIL  168 (321)
T ss_pred             CCccccccccCccccCHHHH
Confidence            2 233345789999999964

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=4.4e-30  Score=205.89  Aligned_cols=171  Identities=16%  Similarity=0.304  Sum_probs=153.2

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .....|.+.+.||+|.|+.|.++.+ -++..||+|.+++..  ......+.+|+++++.+.||||++++.+...      
T Consensus        53 ~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t------  126 (596)
T KOG0586|consen   53 NSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIET------  126 (596)
T ss_pred             ccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeee------
Confidence            4457799999999999999999994 469999999998763  3334568899999999999999999998865      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ...+|+||||+.+|.+.+++.++.  ...+.....++.|+..++.|||+   +.|+|||||++|++++.+.+++|+|||
T Consensus       127 -~~~lylV~eya~~ge~~~yl~~~g--r~~e~~ar~~F~q~vsaveYcH~---k~ivHrdLk~eNilL~~~mnikIaDfg  200 (596)
T KOG0586|consen  127 -EATLYLVMEYASGGELFDYLVKHG--RMKEKEARAKFRQIVSAVEYCHS---KNIVHRDLKAENILLDENMNIKIADFG  200 (596)
T ss_pred             -cceeEEEEEeccCchhHHHHHhcc--cchhhhhhhhhHHHHHHHHHHhh---cceeccccchhhcccccccceeeeccc
Confidence             678999999999999999999775  45557788899999999999999   899999999999999999999999999


Q ss_pred             chhhcccccccccccccccccCCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ++.+++........+|++.|.|||.+
T Consensus       201 fS~~~~~~~~lqt~cgsppyAaPEl~  226 (596)
T KOG0586|consen  201 FSTFFDYGLMLQTFCGSPPYAAPELF  226 (596)
T ss_pred             cceeecccccccccCCCCCccChHhh
Confidence            99999988888889999999999975

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.97  E-value=1.4e-29  Score=195.45  Aligned_cols=169  Identities=18%  Similarity=0.245  Sum_probs=142.9

Q ss_pred             CCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCc---CHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           25 NFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSH---STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .|+..+.||+|+||.||++.. .+++.+|+|.+......   ....+.+|+.+++.++|++++++.+.+.+       .+
T Consensus         1 ~f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~-------~~   73 (285)
T cd05630           1 TFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYET-------KD   73 (285)
T ss_pred             CceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEec-------CC
Confidence            477889999999999999995 46889999998654322   23456789999999999999999888765       56


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..+++|||+++++|.+++.......+++..+..++.|++.||.|||+   .+++|+||||+||++++++.++|+|||++.
T Consensus        74 ~~~lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~  150 (285)
T cd05630          74 ALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQ---ERIVYRDLKPENILLDDHGHIRISDLGLAV  150 (285)
T ss_pred             EEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHEEECCCCCEEEeecccee
Confidence            89999999999999998865443468899999999999999999999   799999999999999999999999999997


Q ss_pred             hcccccccccccccccccCCCCC
Q 028725          181 LAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ............++..|+|||..
T Consensus       151 ~~~~~~~~~~~~g~~~y~aPE~~  173 (285)
T cd05630         151 HVPEGQTIKGRVGTVGYMAPEVV  173 (285)
T ss_pred             ecCCCccccCCCCCccccChHHH
Confidence            66544443445789999999974

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.97  E-value=9.3e-30  Score=199.79  Aligned_cols=167  Identities=21%  Similarity=0.288  Sum_probs=137.8

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccC-CCcccccccceeeecccCCCC
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      +|+..+.||+|+||.||+|... +++.||+|++.+..   ......+..|..++..+. |++|+++.+.+..       .
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-------~   73 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQT-------V   73 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEec-------C
Confidence            4788899999999999999954 68899999997542   234456777888888876 4667777776654       5


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +..++||||+++++|.+++....  .+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||++
T Consensus        74 ~~~~lv~Ey~~~g~L~~~i~~~~--~l~~~~~~~i~~qi~~al~~lH~---~~ivHrDikp~Nill~~~~~ikL~Dfg~~  148 (323)
T cd05615          74 DRLYFVMEYVNGGDLMYHIQQVG--KFKEPQAVFYAAEISVGLFFLHR---RGIIYRDLKLDNVMLDSEGHIKIADFGMC  148 (323)
T ss_pred             CEEEEEEcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEEeccccc
Confidence            68999999999999999887653  68899999999999999999999   79999999999999999999999999998


Q ss_pred             hhccccc-ccccccccccccCCCCC
Q 028725          180 LLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      +...... ......||..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~gt~~y~aPE~~  173 (323)
T cd05615         149 KEHMVDGVTTRTFCGTPDYIAPEII  173 (323)
T ss_pred             cccCCCCccccCccCCccccCHHHH
Confidence            7543322 23345789999999964

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1.8e-30  Score=202.66  Aligned_cols=171  Identities=18%  Similarity=0.386  Sum_probs=141.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhc--cCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISK--LRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~--l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ....+..+++|+|+||.||+|... ++.||||++.   ..+.+.|.+|-.+.+.  ++|+||+++++.-.....   ...
T Consensus       209 l~pl~l~eli~~Grfg~V~KaqL~-~~~VAVKifp---~~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~---~~~  281 (534)
T KOG3653|consen  209 LDPLQLLELIGRGRFGCVWKAQLD-NRLVAVKIFP---EQEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTA---DRM  281 (534)
T ss_pred             CCchhhHHHhhcCccceeehhhcc-CceeEEEecC---HHHHHHHHhHHHHHhccCccchhHHHhhchhccCCc---ccc
Confidence            355677888999999999999986 6899999996   4556677777776655  589999999886543111   134


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCC------CCceeecCCccccEEeCCCCceeEc
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGI------VPGVFSNNLKITDILLDQNLVAKIS  174 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~------~~~i~h~dlkp~nilv~~~~~~~l~  174 (205)
                      ..|||++|.+.|+|.+++..+   ..+|.....++..+++||+|||+..      +.+|.|||||..||||.+|+++.|+
T Consensus       282 eywLVt~fh~kGsL~dyL~~n---tisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIa  358 (534)
T KOG3653|consen  282 EYWLVTEFHPKGSLCDYLKAN---TISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIA  358 (534)
T ss_pred             ceeEEeeeccCCcHHHHHHhc---cccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEee
Confidence            789999999999999999985   6899999999999999999999643      4679999999999999999999999


Q ss_pred             CCCchhhcccccc---cccccccccccCCCCC
Q 028725          175 SYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       175 Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      |||+|..+.....   ....+||..|||||..
T Consensus       359 DFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvL  390 (534)
T KOG3653|consen  359 DFGLALRLEPGKPQGDTHGQVGTRRYMAPEVL  390 (534)
T ss_pred             ccceeEEecCCCCCcchhhhhhhhhhcCHHHH
Confidence            9999987775432   2235999999999964

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.97  E-value=1.8e-29  Score=200.76  Aligned_cols=174  Identities=16%  Similarity=0.180  Sum_probs=141.9

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ...++|++.+.||+|+||.||++.. .+++.+|+|.+....  ......+.+|+.+++.++||||+++.+++..... ..
T Consensus        18 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~-~~   96 (359)
T cd07876          18 TVLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKS-LE   96 (359)
T ss_pred             hhhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCC-cc
Confidence            4468999999999999999999995 458899999996542  3345667889999999999999999987754211 01


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      .....+++|||+.+ ++.+.+..    .+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||
T Consensus        97 ~~~~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~~~~qi~~~L~~LH~---~~ivHrDlkp~NIl~~~~~~~kl~Dfg  168 (359)
T cd07876          97 EFQDVYLVMELMDA-NLCQVIHM----ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFG  168 (359)
T ss_pred             ccceeEEEEeCCCc-CHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEEecCC
Confidence            12457999999965 66666543    47788889999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccccccccccccccCCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +++............+|..|+|||..
T Consensus       169 ~a~~~~~~~~~~~~~~t~~y~aPE~~  194 (359)
T cd07876         169 LARTACTNFMMTPYVVTRYYRAPEVI  194 (359)
T ss_pred             CccccccCccCCCCcccCCCCCchhc
Confidence            99866554444556889999999974

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.97  E-value=1.3e-29  Score=194.89  Aligned_cols=162  Identities=17%  Similarity=0.282  Sum_probs=136.9

Q ss_pred             eccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEEe
Q 028725           32 MGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE  107 (205)
Q Consensus        32 lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e  107 (205)
                      ||+|+||.||++.. .+|+.+|+|.+....   .........|+++++.++||||+++.+.+..       ....+++||
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~-------~~~~~lv~e   73 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFES-------KTHLCLVMS   73 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEec-------CCeEEEEEe
Confidence            68999999999995 468999999996432   1223445669999999999999999887755       568999999


Q ss_pred             ecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcccccc
Q 028725          108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK  187 (205)
Q Consensus       108 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~  187 (205)
                      |+++++|.+++.......+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||++........
T Consensus        74 ~~~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~  150 (277)
T cd05607          74 LMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHS---MDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKT  150 (277)
T ss_pred             cCCCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHH---CCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCce
Confidence            9999999988865544568899999999999999999999   7999999999999999999999999999987665544


Q ss_pred             cccccccccccCCCCC
Q 028725          188 VGHVTPYSGSINPTNS  203 (205)
Q Consensus       188 ~~~~~~~~~~~aPE~~  203 (205)
                      .....++..|+|||..
T Consensus       151 ~~~~~~~~~y~aPE~~  166 (277)
T cd05607         151 ITQRAGTNGYMAPEIL  166 (277)
T ss_pred             eeccCCCCCccCHHHH
Confidence            4456789999999974

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.97  E-value=2.1e-29  Score=192.45  Aligned_cols=169  Identities=18%  Similarity=0.366  Sum_probs=145.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ..+|++.+.||+|+||.||+|.. .+++.+++|++..........+.+|+.+++.++||||+++.+.+..       ...
T Consensus         8 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~-------~~~   80 (267)
T cd06646           8 QHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLS-------REK   80 (267)
T ss_pred             hhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEe-------CCE
Confidence            46799999999999999999995 4688999999976655556678889999999999999999998866       568


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++||+++++|.+++....  .+++..+..++.|++.+|.|||+   .+++|+|++|+||++++++.++|+|||++..
T Consensus        81 ~~iv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nill~~~~~~~l~dfg~~~~  155 (267)
T cd06646          81 LWICMEYCGGGSLQDIYHVTG--PLSELQIAYVCRETLQGLAYLHS---KGKMHRDIKGANILLTDNGDVKLADFGVAAK  155 (267)
T ss_pred             EEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCCEEECcCcccee
Confidence            999999999999999886543  68889999999999999999999   7999999999999999999999999999976


Q ss_pred             ccccc-ccccccccccccCCCCC
Q 028725          182 AENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ..... ......++..|+|||..
T Consensus       156 ~~~~~~~~~~~~~~~~y~~PE~~  178 (267)
T cd06646         156 ITATIAKRKSFIGTPYWMAPEVA  178 (267)
T ss_pred             ecccccccCccccCccccCHhHc
Confidence            54322 22335788899999964

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.97  E-value=8.6e-30  Score=200.30  Aligned_cols=162  Identities=22%  Similarity=0.298  Sum_probs=136.1

Q ss_pred             eeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||+|+||.||+|.. .+++.+|+|+++...   ......+.+|..++.++ .||+|+++.+.+..       .+..++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-------~~~~~l   73 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQT-------TSRLFL   73 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEe-------CCEEEE
Confidence            4689999999999995 458899999997642   23345677888888887 69999999987765       568999


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcc-
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE-  183 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~-  183 (205)
                      ||||+++++|...+....  .+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||++.... 
T Consensus        74 v~e~~~~~~L~~~~~~~~--~l~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~  148 (327)
T cd05617          74 VIEYVNGGDLMFHMQRQR--KLPEEHARFYAAEICIALNFLHE---RGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLG  148 (327)
T ss_pred             EEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEeCCCCEEEeccccceeccC
Confidence            999999999998887553  68999999999999999999999   799999999999999999999999999987532 


Q ss_pred             cccccccccccccccCCCCC
Q 028725          184 NAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       184 ~~~~~~~~~~~~~~~aPE~~  203 (205)
                      .........||..|+|||..
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~  168 (327)
T cd05617         149 PGDTTSTFCGTPNYIAPEIL  168 (327)
T ss_pred             CCCceecccCCcccCCHHHH
Confidence            22333446799999999974

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.97  E-value=1.2e-29  Score=199.27  Aligned_cols=162  Identities=19%  Similarity=0.291  Sum_probs=131.7

Q ss_pred             eeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHH-HHHhccCCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHI-ELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~-~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||+|+||.||+|... +++.+|+|++....   ......+..|. .+++.++||||+++.+.+..       .+..++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~-------~~~~~l   73 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQT-------ADKLYF   73 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEc-------CCeEEE
Confidence            46899999999999954 57889999997542   22223334443 45678899999999887765       568999


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      +|||+++++|.+.+....  .+.+.....++.|++.||.|||+   .+++||||||+||++++++.++|+|||+++....
T Consensus        74 v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~L~~lH~---~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~  148 (325)
T cd05602          74 VLDYINGGELFYHLQRER--CFLEPRARFYAAEIASALGYLHS---LNIVYRDLKPENILLDSQGHIVLTDFGLCKENIE  148 (325)
T ss_pred             EEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEECCCCCEEEccCCCCccccc
Confidence            999999999999887653  57788888899999999999999   7999999999999999999999999999875432


Q ss_pred             -ccccccccccccccCCCCC
Q 028725          185 -AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 -~~~~~~~~~~~~~~aPE~~  203 (205)
                       ........||..|+|||..
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~  168 (325)
T cd05602         149 HNGTTSTFCGTPEYLAPEVL  168 (325)
T ss_pred             CCCCcccccCCccccCHHHH
Confidence             2333445799999999964

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.97  E-value=8.9e-30  Score=209.89  Aligned_cols=189  Identities=14%  Similarity=0.179  Sum_probs=149.9

Q ss_pred             cccCHHHHHHHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccc
Q 028725           12 RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGH   88 (205)
Q Consensus        12 ~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~   88 (205)
                      ............++|++.+.||+|+||.||+|.. .+++.||+|+++...  ......+.+|+..+..++|+|++++...
T Consensus        20 ~~~d~~~~~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~   99 (496)
T PTZ00283         20 FAKDEATAKEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHED   99 (496)
T ss_pred             cCCCcccccccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecc
Confidence            3344455556678999999999999999999994 569999999997553  2344567889999999999999998776


Q ss_pred             eeeecccC-CCCCeEEEEEeecCCCcHHHhhccC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEe
Q 028725           89 CFECYFDD-SSVSRIFLIFEYVPNGTLRSWISGH--AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL  165 (205)
Q Consensus        89 ~~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv  165 (205)
                      +....... .....++++|||+++|+|.+++..+  ....+++..+..++.|++.||.|||+   .+++||||||+||++
T Consensus       100 ~~~~~~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~---~~IiHrDLKP~NILl  176 (496)
T PTZ00283        100 FAKKDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHS---KHMIHRDIKSANILL  176 (496)
T ss_pred             eecccccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEE
Confidence            54322111 1122468999999999999998643  22468899999999999999999999   799999999999999


Q ss_pred             CCCCceeEcCCCchhhcccc---cccccccccccccCCCCC
Q 028725          166 DQNLVAKISSYNLPLLAENA---EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       166 ~~~~~~~l~Dfg~a~~~~~~---~~~~~~~~~~~~~aPE~~  203 (205)
                      ++++.++|+|||+++.....   .......||..|+|||..
T Consensus       177 ~~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~  217 (496)
T PTZ00283        177 CSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIW  217 (496)
T ss_pred             eCCCCEEEEecccCeeccccccccccccccCCcceeCHHHh
Confidence            99999999999999765432   122345799999999975

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.97  E-value=6e-30  Score=194.73  Aligned_cols=173  Identities=23%  Similarity=0.386  Sum_probs=149.0

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ....+|++.+.||.|++|.||+|...++..+++|++..........+.+|+.+++.++|+||+++.+.+..       ..
T Consensus         3 ~~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~   75 (261)
T cd05148           3 RPREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSV-------GE   75 (261)
T ss_pred             CcHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEec-------CC
Confidence            34567999999999999999999987789999999987666567788999999999999999999988765       56


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..+++|||+++++|.+++....+..+++..++.++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~---~~i~h~dl~~~nilv~~~~~~kl~d~g~~~  152 (261)
T cd05148          76 PVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEE---QNSIHRDLAARNILVGEDLVCKVADFGLAR  152 (261)
T ss_pred             CeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccCcceEEEcCCceEEEccccchh
Confidence            78999999999999999986555678999999999999999999999   799999999999999999999999999997


Q ss_pred             hcccccc-cccccccccccCCCCC
Q 028725          181 LAENAEK-VGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~~aPE~~  203 (205)
                      ....... .....++..|+|||..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~PE~~  176 (261)
T cd05148         153 LIKEDVYLSSDKKIPYKWTAPEAA  176 (261)
T ss_pred             hcCCccccccCCCCceEecCHHHH
Confidence            6654321 1223456789999964

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.97  E-value=2.4e-29  Score=194.53  Aligned_cols=166  Identities=22%  Similarity=0.363  Sum_probs=144.9

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|++.+.||+|++|.||++... +++.+++|++....   ......+.+|++++++++||||+++.+.+..       .
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~   73 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQD-------D   73 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEc-------C
Confidence            47899999999999999999954 58999999986542   2345678889999999999999999998865       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...+++|||+++++|.+++....  .+++..+..++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||++
T Consensus        74 ~~~~~v~e~~~~~~L~~~~~~~~--~l~~~~~~~~~~qil~~l~~lH~---~~i~H~dl~p~nili~~~~~~kl~dfg~~  148 (290)
T cd05580          74 SNLYLVMEYVPGGELFSHLRKSG--RFPEPVARFYAAQVVLALEYLHS---LDIVYRDLKPENLLLDSDGYIKITDFGFA  148 (290)
T ss_pred             CeEEEEEecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEECCCCCEEEeeCCCc
Confidence            78999999999999999987653  68899999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ......  .....++..|+|||..
T Consensus       149 ~~~~~~--~~~~~~~~~y~aPE~~  170 (290)
T cd05580         149 KRVKGR--TYTLCGTPEYLAPEII  170 (290)
T ss_pred             cccCCC--CCCCCCCccccChhhh
Confidence            876654  3345788999999964

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.97  E-value=2.1e-29  Score=205.20  Aligned_cols=173  Identities=13%  Similarity=0.221  Sum_probs=138.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCC-CCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS-SVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~-~~~  100 (205)
                      ..+|++++.||+|+||.||+|.. .+++.||+|.+....    ....+|+.+++.++||||+++.+++....+... ...
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~  140 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP----QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNI  140 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCce
Confidence            45799999999999999999995 468899999885332    234579999999999999999887654332221 123


Q ss_pred             eEEEEEeecCCCcHHHhhcc--CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC-ceeEcCCC
Q 028725          101 RIFLIFEYVPNGTLRSWISG--HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-VAKISSYN  177 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~-~~~l~Dfg  177 (205)
                      .++++|||+++ ++.+++..  .....+++..++.++.|++.||.|||+   .+|+||||||+||+++.++ .++|+|||
T Consensus       141 ~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~---~~IiHrDLKp~NILl~~~~~~vkL~DFG  216 (440)
T PTZ00036        141 FLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHS---KFICHRDLKPQNLLIDPNTHTLKLCDFG  216 (440)
T ss_pred             EEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCcCHHHEEEcCCCCceeeeccc
Confidence            57799999975 77776642  223468899999999999999999999   7999999999999999664 79999999


Q ss_pred             chhhcccccccccccccccccCCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +|+............+|..|+|||..
T Consensus       217 la~~~~~~~~~~~~~~t~~y~aPE~~  242 (440)
T PTZ00036        217 SAKNLLAGQRSVSYICSRFYRAPELM  242 (440)
T ss_pred             cchhccCCCCcccCCCCcCccCHHHh
Confidence            99877665555556889999999963

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.97  E-value=1.5e-29  Score=193.31  Aligned_cols=169  Identities=18%  Similarity=0.359  Sum_probs=146.0

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      .++|.+.+.||+|+||.||+|.. .+++.+++|+++.........+.+|+.+++.++||||+++.+.+..       ...
T Consensus         8 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~-------~~~   80 (267)
T cd06645           8 QEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLR-------RDK   80 (267)
T ss_pred             HHHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEe-------CCE
Confidence            46899999999999999999995 4688999999976655556678889999999999999999998765       678


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++||+++++|.+++....  .+++...+.++.|++.++.|||+   .+++|+||||+||+++.++.++|+|||++..
T Consensus        81 ~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nili~~~~~~~l~dfg~~~~  155 (267)
T cd06645          81 LWICMEFCGGGSLQDIYHVTG--PLSESQIAYVSRETLQGLYYLHS---KGKMHRDIKGANILLTDNGHVKLADFGVSAQ  155 (267)
T ss_pred             EEEEEeccCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECcceeeeE
Confidence            999999999999999987554  68899999999999999999999   7999999999999999999999999999865


Q ss_pred             cccc-cccccccccccccCCCCC
Q 028725          182 AENA-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~-~~~~~~~~~~~~~aPE~~  203 (205)
                      .... .......++..|+|||..
T Consensus       156 ~~~~~~~~~~~~~~~~y~aPE~~  178 (267)
T cd06645         156 ITATIAKRKSFIGTPYWMAPEVA  178 (267)
T ss_pred             ccCcccccccccCcccccChhhh
Confidence            5432 222345789999999964

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.2e-30  Score=202.88  Aligned_cols=174  Identities=18%  Similarity=0.244  Sum_probs=152.7

Q ss_pred             HHHhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           20 EEATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        20 ~~~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      ....+.|+.-+.||+|+||.|+-+. ..+|+.+|.|.+.++.   ........+|-.+|..+..+.|+.+--.+..    
T Consensus       181 pvt~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeT----  256 (591)
T KOG0986|consen  181 PVTKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFET----  256 (591)
T ss_pred             hccccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecC----
Confidence            3455778999999999999999999 4579999999986652   3344566789999999999988887665544    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                         .+.+++|+..|.||+|.=.|...+...+++.....++.+|+.||.+||+   .+|++||+||+|||+|++|.++|+|
T Consensus       257 ---kd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~---~~iVYRDLKPeNILLDd~GhvRISD  330 (591)
T KOG0986|consen  257 ---KDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHR---RRIVYRDLKPENILLDDHGHVRISD  330 (591)
T ss_pred             ---CCceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHh---cceeeccCChhheeeccCCCeEeec
Confidence               6789999999999999988887766789999999999999999999999   8999999999999999999999999


Q ss_pred             CCchhhcccccccccccccccccCCCCC
Q 028725          176 YNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +|+|..+.........+||.||||||..
T Consensus       331 LGLAvei~~g~~~~~rvGT~GYMAPEvl  358 (591)
T KOG0986|consen  331 LGLAVEIPEGKPIRGRVGTVGYMAPEVL  358 (591)
T ss_pred             cceEEecCCCCccccccCcccccCHHHH
Confidence            9999999988887778999999999964

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.96  E-value=5.2e-29  Score=192.24  Aligned_cols=173  Identities=20%  Similarity=0.331  Sum_probs=140.0

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhcc---CCCcccccccceeeecccCCC
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKL---RHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l---~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      +|++.+.||+|+||.||+|... +++.+|+|.++...  ........+|+.+++.+   +||||+++.+++.....  ..
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~--~~   78 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRT--DR   78 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccC--CC
Confidence            5889999999999999999954 68899999987542  22233455677766655   69999999987754211  22


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....++++|++.+ +|.+++.......+++..+..++.|++.||.|||+   .+++|+||||+||++++++.++|+|||+
T Consensus        79 ~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dikp~Nili~~~~~~kl~dfg~  154 (288)
T cd07863          79 ETKVTLVFEHVDQ-DLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHA---NCIVHRDLKPENILVTSGGQVKLADFGL  154 (288)
T ss_pred             CceEEEEEccccc-CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEECccCc
Confidence            4568999999975 89888876554568999999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +.............++..|+|||..
T Consensus       155 ~~~~~~~~~~~~~~~~~~y~aPE~~  179 (288)
T cd07863         155 ARIYSCQMALTPVVVTLWYRAPEVL  179 (288)
T ss_pred             cccccCcccCCCccccccccCchHh
Confidence            9877654444456789999999964

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.96  E-value=2.1e-29  Score=197.24  Aligned_cols=162  Identities=20%  Similarity=0.332  Sum_probs=134.3

Q ss_pred             eeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhc-cCCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISK-LRHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||+|+||.||+|... +|..||+|+++...   .........|..++.. .+||+|+++.+.+.+       .+..++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-------~~~~~l   73 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQT-------KEHLFF   73 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEe-------CCEEEE
Confidence            46899999999999964 58899999997542   2344556667777765 489999999988765       678999


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ||||+.+++|.+++....  .+++.....++.|++.||.|||+   .+++||||||+||++++++.++|+|||+++....
T Consensus        74 v~E~~~~g~L~~~i~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~  148 (316)
T cd05620          74 VMEFLNGGDLMFHIQDKG--RFDLYRATFYAAEIVCGLQFLHS---KGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVF  148 (316)
T ss_pred             EECCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEECCCCCEEeCccCCCeeccc
Confidence            999999999999887653  67888899999999999999999   7999999999999999999999999999864322


Q ss_pred             -ccccccccccccccCCCCC
Q 028725          185 -AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 -~~~~~~~~~~~~~~aPE~~  203 (205)
                       ........||..|+|||..
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~  168 (316)
T cd05620         149 GDNRASTFCGTPDYIAPEIL  168 (316)
T ss_pred             CCCceeccCCCcCccCHHHH
Confidence             2233445789999999964

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.96  E-value=2.8e-29  Score=196.49  Aligned_cols=162  Identities=24%  Similarity=0.345  Sum_probs=134.1

Q ss_pred             eeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhc-cCCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISK-LRHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||+|+||.||+|... +++.||+|+++...   .........|..++.. ++||||+++.+.+.+       ....++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~-------~~~~~l   73 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQT-------KENLFF   73 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEe-------CCEEEE
Confidence            46899999999999954 57899999997542   2344556667777775 489999999988866       568999


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      +|||+++++|.+++....  .+++.....++.|++.||.|||+   .+++||||||+||++++++.++|+|||++.....
T Consensus        74 v~ey~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~LH~---~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~  148 (316)
T cd05619          74 VMEYLNGGDLMFHIQSCH--KFDLPRATFYAAEIICGLQFLHS---KGIVYRDLKLDNILLDTDGHIKIADFGMCKENML  148 (316)
T ss_pred             EEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHEEECCCCCEEEccCCcceECCC
Confidence            999999999999987643  67888899999999999999999   7999999999999999999999999999864322


Q ss_pred             -ccccccccccccccCCCCC
Q 028725          185 -AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 -~~~~~~~~~~~~~~aPE~~  203 (205)
                       ........||..|+|||..
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~  168 (316)
T cd05619         149 GDAKTCTFCGTPDYIAPEIL  168 (316)
T ss_pred             CCCceeeecCCccccCHHHH
Confidence             2233445789999999964

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.96  E-value=1.3e-29  Score=202.65  Aligned_cols=172  Identities=22%  Similarity=0.340  Sum_probs=139.6

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe------cCCcEEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCcccccccceeeec
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL------KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFECY   93 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~------~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~   93 (205)
                      ..++|++.+.||+|+||.||+|.+      .++..||+|+++... ....+.+.+|+.++..+ +||||+++.+.+..  
T Consensus        33 ~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~--  110 (375)
T cd05104          33 PRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTV--  110 (375)
T ss_pred             chHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeecc--
Confidence            346899999999999999999973      235689999996443 33456788899999999 89999999998865  


Q ss_pred             ccCCCCCeEEEEEeecCCCcHHHhhccCC---------------------------------------------------
Q 028725           94 FDDSSVSRIFLIFEYVPNGTLRSWISGHA---------------------------------------------------  122 (205)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~---------------------------------------------------  122 (205)
                           .+..+++|||+++|+|.+++....                                                   
T Consensus       111 -----~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  185 (375)
T cd05104         111 -----GGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADK  185 (375)
T ss_pred             -----CCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCccccccccccc
Confidence                 567899999999999999885321                                                   


Q ss_pred             ----------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          123 ----------------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       123 ----------------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                                            ...+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~  262 (375)
T cd05104         186 RRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLAS---KNCIHRDLAARNILLTHGRITKICDFGLAR  262 (375)
T ss_pred             ccccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCchhhEEEECCCcEEEecCccce
Confidence                                  1246788889999999999999999   799999999999999999999999999997


Q ss_pred             hccccccc---ccccccccccCCCCC
Q 028725          181 LAENAEKV---GHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~---~~~~~~~~~~aPE~~  203 (205)
                      ........   ....++..|+|||..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~y~aPE~~  288 (375)
T cd05104         263 DIRNDSNYVVKGNARLPVKWMAPESI  288 (375)
T ss_pred             eccCcccccccCCCCCCcceeChhHh
Confidence            65543221   112345679999964

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.96  E-value=2e-29  Score=200.26  Aligned_cols=174  Identities=16%  Similarity=0.181  Sum_probs=143.2

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ...++|++.+.||+|+||.||++.. .+++.+|+|.+....  ......+.+|+.+++.++||||+++.+++...... .
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~-~   92 (355)
T cd07874          14 TVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSL-E   92 (355)
T ss_pred             hhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccc-c
Confidence            4568999999999999999999984 468899999997542  23346677899999999999999999877542111 1


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      .....+++||++.+ ++.+.+..    .+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||
T Consensus        93 ~~~~~~lv~e~~~~-~l~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~---~givHrDikp~Nill~~~~~~kl~Dfg  164 (355)
T cd07874          93 EFQDVYLVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFG  164 (355)
T ss_pred             ccceeEEEhhhhcc-cHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChHHEEECCCCCEEEeeCc
Confidence            23467999999965 67776643    47788899999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccccccccccccccCCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +++............+|..|+|||..
T Consensus       165 ~~~~~~~~~~~~~~~~t~~y~aPE~~  190 (355)
T cd07874         165 LARTAGTSFMMTPYVVTRYYRAPEVI  190 (355)
T ss_pred             ccccCCCccccCCccccCCccCHHHH
Confidence            99876655544556889999999964

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.96  E-value=4.1e-29  Score=192.52  Aligned_cols=172  Identities=20%  Similarity=0.388  Sum_probs=142.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-----CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-----NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ..+|++.+.||+|+||.||++...     ++..|++|.+..........+.+|+++++.++||||+++.+.+..     .
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~   77 (284)
T cd05081           3 ERHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYS-----A   77 (284)
T ss_pred             cccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEcc-----C
Confidence            357899999999999999999742     478899999876655556778899999999999999999887754     2


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      +....++++||+++++|.+++.... ..+++...+.++.|++.||.|||+   .+++|+||||+||++++++.++|+|||
T Consensus        78 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~l~~aL~~LH~---~~i~H~dlkp~nili~~~~~~~l~dfg  153 (284)
T cd05081          78 GRRNLRLVMEYLPYGSLRDYLQKHR-ERLDHRKLLLYASQICKGMEYLGS---KRYVHRDLATRNILVESENRVKIGDFG  153 (284)
T ss_pred             CCCceEEEEEecCCCCHHHHHHhcC-cCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCCHhhEEECCCCeEEECCCc
Confidence            2456899999999999999987543 358899999999999999999999   799999999999999999999999999


Q ss_pred             chhhccccccc----ccccccccccCCCCC
Q 028725          178 LPLLAENAEKV----GHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~----~~~~~~~~~~aPE~~  203 (205)
                      +++........    ....+...|+|||..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  183 (284)
T cd05081         154 LTKVLPQDKEYYKVREPGESPIFWYAPESL  183 (284)
T ss_pred             ccccccCCCcceeecCCCCCceEeeCHHHh
Confidence            99876543321    111234459999964

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=4.5e-29  Score=198.39  Aligned_cols=165  Identities=11%  Similarity=0.175  Sum_probs=138.6

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ...+|++.+.||+|+||.||+|... ++..||+|+....      ....|+.+++.++||||+++++.+..       ..
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~------~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~  130 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG------TTLIEAMLLQNVNHPSVIRMKDTLVS-------GA  130 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc------ccHHHHHHHHhCCCCCCcChhheEEe-------CC
Confidence            3457999999999999999999964 5778999975422      22458999999999999999998876       56


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++++|++. ++|.+++.... ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||+++
T Consensus       131 ~~~lv~e~~~-~~l~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~  205 (357)
T PHA03209        131 ITCMVLPHYS-SDLYTYLTKRS-RPLPIDQALIIEKQILEGLRYLHA---QRIIHRDVKTENIFINDVDQVCIGDLGAAQ  205 (357)
T ss_pred             eeEEEEEccC-CcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEecCcccc
Confidence            7899999995 58888876543 468899999999999999999999   799999999999999999999999999997


Q ss_pred             hcccccccccccccccccCCCCCC
Q 028725          181 LAENAEKVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~aPE~~~  204 (205)
                      ............||..|+|||...
T Consensus       206 ~~~~~~~~~~~~gt~~y~aPE~~~  229 (357)
T PHA03209        206 FPVVAPAFLGLAGTVETNAPEVLA  229 (357)
T ss_pred             ccccCcccccccccccccCCeecC
Confidence            655444444467999999999753

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.96  E-value=2.3e-29  Score=196.97  Aligned_cols=169  Identities=19%  Similarity=0.349  Sum_probs=139.5

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCc----EEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGT----FIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~----~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      .++|+..+.||+|+||.||+|.+. ++.    .||+|.++... ......+.+|+.+++.++||||+++++.+..     
T Consensus         6 ~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~-----   80 (316)
T cd05108           6 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT-----   80 (316)
T ss_pred             hhhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcC-----
Confidence            367999999999999999999853 333    48999986443 3345678889999999999999999998864     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                         ...+++++++++|+|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||++++++.++|+||
T Consensus        81 ---~~~~~v~e~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~LH~---~~iiH~dlkp~Nill~~~~~~kl~Df  153 (316)
T cd05108          81 ---STVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEE---RRLVHRDLAARNVLVKTPQHVKITDF  153 (316)
T ss_pred             ---CCceeeeecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHh---cCeeccccchhheEecCCCcEEEccc
Confidence               34679999999999999987643 357888899999999999999999   79999999999999999999999999


Q ss_pred             Cchhhcccccccc---cccccccccCCCCC
Q 028725          177 NLPLLAENAEKVG---HVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~~~~---~~~~~~~~~aPE~~  203 (205)
                      |+++.........   ....+..|+|||..
T Consensus       154 G~a~~~~~~~~~~~~~~~~~~~~y~apE~~  183 (316)
T cd05108         154 GLAKLLGADEKEYHAEGGKVPIKWMALESI  183 (316)
T ss_pred             cccccccCCCcceeccCCccceeecChHHh
Confidence            9998766443221   12345679999974

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=5.1e-29  Score=189.76  Aligned_cols=171  Identities=21%  Similarity=0.370  Sum_probs=143.6

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ..++|++.+.||+|++|.||+|...+++.|++|.++... ...+.+.+|+.++++++|||++++.+.+..       .+.
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~   75 (261)
T cd05068           4 DRTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGT-MDPKDFLAEAQIMKKLRHPKLIQLYAVCTL-------EEP   75 (261)
T ss_pred             chhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCc-ccHHHHHHHHHHHHHCCCCCccceeEEEec-------CCC
Confidence            356799999999999999999997777889999986443 345678899999999999999999987755       567


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++|++++++|.+++.......+++..+..++.|++.|+.+||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        76 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~  152 (261)
T cd05068          76 IYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEA---QNYIHRDLAARNVLVGENNICKVADFGLARV  152 (261)
T ss_pred             eeeeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCCcceEEEcCCCCEEECCcceEEE
Confidence            8999999999999999976544568999999999999999999999   7999999999999999999999999999986


Q ss_pred             ccccccccc--ccccccccCCCCC
Q 028725          182 AENAEKVGH--VTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~~~~--~~~~~~~~aPE~~  203 (205)
                      .........  ......|+|||..
T Consensus       153 ~~~~~~~~~~~~~~~~~y~aPE~~  176 (261)
T cd05068         153 IKEDIYEAREGAKFPIKWTAPEAA  176 (261)
T ss_pred             ccCCcccccCCCcCceeccCcccc
Confidence            654322111  1223579999964

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.96  E-value=3.3e-31  Score=197.42  Aligned_cols=167  Identities=19%  Similarity=0.358  Sum_probs=150.0

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ..-|.+.+.||+|+||.||+|.++ +|..+|+|.+..  ..+.+.+..|+.++++++.|++++++|.++.       +..
T Consensus        32 EEVFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV--~sDLQEIIKEISIMQQC~S~yVVKYYGSYFK-------~sD  102 (502)
T KOG0574|consen   32 EEVFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPV--DTDLQEIIKEISIMQQCKSKYVVKYYGSYFK-------HSD  102 (502)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCc--cchHHHHHHHHHHHHHcCCchhhhhhhhhcc-------CCc
Confidence            345889999999999999999965 599999999854  3577888999999999999999999998887       778


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      +|+|||||..|++.+.+..++ .++.+..+..+.+..++||.|||.   ..-+|||||+.||++.-+|.+||+|||.|..
T Consensus       103 LWIVMEYCGAGSiSDI~R~R~-K~L~E~EIs~iL~~TLKGL~YLH~---~~KIHRDIKAGNILLNT~G~AKLADFGVAGQ  178 (502)
T KOG0574|consen  103 LWIVMEYCGAGSISDIMRARR-KPLSEQEISAVLRDTLKGLQYLHD---LKKIHRDIKAGNILLNTDGIAKLADFGVAGQ  178 (502)
T ss_pred             eEeehhhcCCCcHHHHHHHhc-CCccHHHHHHHHHHHHhHHHHHHH---HHHHHhhcccccEEEcccchhhhhhccccch
Confidence            999999999999999988655 589999999999999999999999   7899999999999999999999999999976


Q ss_pred             cccc-cccccccccccccCCCC
Q 028725          182 AENA-EKVGHVTPYSGSINPTN  202 (205)
Q Consensus       182 ~~~~-~~~~~~~~~~~~~aPE~  202 (205)
                      +++. .+.+...||+-|||||.
T Consensus       179 LTDTMAKRNTVIGTPFWMAPEV  200 (502)
T KOG0574|consen  179 LTDTMAKRNTVIGTPFWMAPEV  200 (502)
T ss_pred             hhhhHHhhCccccCcccccHHH
Confidence            6654 46677899999999995

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.96  E-value=2.7e-29  Score=214.83  Aligned_cols=170  Identities=17%  Similarity=0.288  Sum_probs=140.4

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC---cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|++.+.||+|+||.||+|... +++.||+|++.....   ...+.+.+|+.+++.++||||+++++.+.+       +
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d-------~   74 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSD-------G   74 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEee-------C
Confidence            68999999999999999999954 589999999975422   224568899999999999999999998865       5


Q ss_pred             CeEEEEEeecCCCcHHHhhccCC---------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHA---------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  170 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~---------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~  170 (205)
                      +..+++|||+++++|.+++....         ....+...++.++.|++.||.|||+   .+++||||||+||+++.++.
T Consensus        75 ~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs---~GIIHRDLKPeNILLd~dg~  151 (932)
T PRK13184         75 DPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHS---KGVLHRDLKPDNILLGLFGE  151 (932)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHH---CCccccCCchheEEEcCCCC
Confidence            68999999999999999886310         1234566778899999999999999   79999999999999999999


Q ss_pred             eeEcCCCchhhcccc-------------------cccccccccccccCCCCC
Q 028725          171 AKISSYNLPLLAENA-------------------EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       171 ~~l~Dfg~a~~~~~~-------------------~~~~~~~~~~~~~aPE~~  203 (205)
                      ++|+|||++......                   .......||+.|+|||..
T Consensus       152 vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l  203 (932)
T PRK13184        152 VVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERL  203 (932)
T ss_pred             EEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHh
Confidence            999999999765211                   011224689999999964

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.96  E-value=1.2e-29  Score=200.94  Aligned_cols=172  Identities=15%  Similarity=0.262  Sum_probs=144.6

Q ss_pred             HHhcCCCc--ceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           21 EATNNFDT--SAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        21 ~~~~~y~~--~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      ....-|++  .+.||.|-||+||-|.+ ++|+.||+|++++..  ......+.+|+.+|+.+.||+|+.+.-.|..    
T Consensus       559 d~stvYQif~devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET----  634 (888)
T KOG4236|consen  559 DISTVYQIFADEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFET----  634 (888)
T ss_pred             hHHHHHHhhhHhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecC----
Confidence            33344553  56899999999999995 579999999998763  4455778899999999999999998776654    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC---CCcee
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---NLVAK  172 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~---~~~~~  172 (205)
                         .+..++|||.+.|.-|+ .|-......+++.....++.||+.||+|||.   ++|+|.||||+||++.+   ...+|
T Consensus       635 ---~ervFVVMEKl~GDMLE-MILSsEkgRL~er~TkFlvtQIL~ALr~LH~---knIvHCDLKPENVLLas~~~FPQvK  707 (888)
T KOG4236|consen  635 ---PERVFVVMEKLHGDMLE-MILSSEKGRLPERITKFLVTQILVALRYLHF---KNIVHCDLKPENVLLASASPFPQVK  707 (888)
T ss_pred             ---CceEEEEehhhcchHHH-HHHHhhcccchHHHHHHHHHHHHHHHHHhhh---cceeeccCCchheeeccCCCCCcee
Confidence               67899999999664444 4444444689999999999999999999999   89999999999999973   35799


Q ss_pred             EcCCCchhhcccccccccccccccccCCCCC
Q 028725          173 ISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       173 l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |+|||+|+++.+..-.....||+.|+|||..
T Consensus       708 lCDFGfARiIgEksFRrsVVGTPAYLaPEVL  738 (888)
T KOG4236|consen  708 LCDFGFARIIGEKSFRRSVVGTPAYLAPEVL  738 (888)
T ss_pred             eccccceeecchhhhhhhhcCCccccCHHHH
Confidence            9999999999998877888999999999964

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.96  E-value=3.7e-29  Score=191.22  Aligned_cols=170  Identities=22%  Similarity=0.339  Sum_probs=140.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEec----CCcEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~----~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .++|++.+.||+|+||.||+|.+.    .+..|++|.++.... .....+.+|+..++.++||||+++.+.+..      
T Consensus         4 ~~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------   77 (266)
T cd05064           4 NKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITR------   77 (266)
T ss_pred             hHHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEec------
Confidence            467999999999999999999853    356899999875532 334568899999999999999999998765      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ++..++||||+++++|.+++.... ..+++..++.++.|++.||.|||+   .+++|+||||+||++++++.++++|||
T Consensus        78 -~~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~i~~al~~lH~---~~iiH~dikp~nili~~~~~~~l~dfg  152 (266)
T cd05064          78 -GNTMMIVTEYMSNGALDSFLRKHE-GQLVAGQLMGMLPGLASGMKYLSE---MGYVHKGLAAHKVLVNSDLVCKISGFR  152 (266)
T ss_pred             -CCCcEEEEEeCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCEeeccccHhhEEEcCCCcEEECCCc
Confidence             567999999999999999987643 468899999999999999999999   799999999999999999999999999


Q ss_pred             chhhccccccc--ccccccccccCCCCC
Q 028725          178 LPLLAENAEKV--GHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~--~~~~~~~~~~aPE~~  203 (205)
                      .+.........  ....++..|+|||..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~  180 (266)
T cd05064         153 RLQEDKSEAIYTTMSGKSPVLWAAPEAI  180 (266)
T ss_pred             ccccccccchhcccCCCCceeecCHHHH
Confidence            87654322211  122445789999964

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.96  E-value=6.6e-29  Score=193.73  Aligned_cols=169  Identities=15%  Similarity=0.313  Sum_probs=140.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|.+.+.||+|+||.||+|... +++.+|+|.++... ......+.+|+.+++.++||||+++.+.+..       ..
T Consensus         5 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~   77 (309)
T cd07872           5 METYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHT-------DK   77 (309)
T ss_pred             CCceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEee-------CC
Confidence            367999999999999999999954 58889999997553 2334467789999999999999999998865       56


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..+++|||+++ +|.+.+.... ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++.
T Consensus        78 ~~~lv~e~~~~-~l~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~  152 (309)
T cd07872          78 SLTLVFEYLDK-DLKQYMDDCG-NIMSMHNVKIFLYQILRGLAYCHR---RKVLHRDLKPQNLLINERGELKLADFGLAR  152 (309)
T ss_pred             eEEEEEeCCCC-CHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECccccce
Confidence            79999999975 8888776543 357888899999999999999999   799999999999999999999999999997


Q ss_pred             hccccc-ccccccccccccCCCCC
Q 028725          181 LAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ...... ......++..|+|||..
T Consensus       153 ~~~~~~~~~~~~~~~~~y~aPE~~  176 (309)
T cd07872         153 AKSVPTKTYSNEVVTLWYRPPDVL  176 (309)
T ss_pred             ecCCCccccccccccccccCCHHH
Confidence            554332 22334678999999964

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=2.7e-29  Score=197.65  Aligned_cols=160  Identities=16%  Similarity=0.232  Sum_probs=130.7

Q ss_pred             eccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhcc---CCCcccccccceeeecccCCCCCeEEE
Q 028725           32 MGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL---RHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        32 lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l---~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      ||+|+||.||+|... +++.||+|++....   .........|..++...   .||+|+++...+..       .+..++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~-------~~~~~l   73 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQT-------DSDLYL   73 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEec-------CCeEEE
Confidence            699999999999954 58999999996542   22233444566666554   69999999887765       568999


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      +|||+++++|.+.+....  .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++.....
T Consensus        74 v~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~qil~al~~LH~---~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~  148 (330)
T cd05586          74 VTDYMSGGELFWHLQKEG--RFSEDRAKFYIAELVLALEHLHK---YDIVYRDLKPENILLDATGHIALCDFGLSKANLT  148 (330)
T ss_pred             EEcCCCCChHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEecCCcCcCCCC
Confidence            999999999998887553  68899999999999999999999   7999999999999999999999999999875432


Q ss_pred             -ccccccccccccccCCCCC
Q 028725          185 -AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 -~~~~~~~~~~~~~~aPE~~  203 (205)
                       ........||..|+|||..
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~  168 (330)
T cd05586         149 DNKTTNTFCGTTEYLAPEVL  168 (330)
T ss_pred             CCCCccCccCCccccCHHHH
Confidence             2333446799999999964

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.96  E-value=1.1e-29  Score=210.62  Aligned_cols=179  Identities=16%  Similarity=0.243  Sum_probs=145.2

Q ss_pred             hcCCCcceeeccCcceEEEEEEecC-CcEEEEEEecccCCcCHHHHHHHHHHHhccC-CCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~-~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ..++++.+.|.+|||+.||+|.... |.++|+|++-.......+.+.+|+++++.|+ |+||+.+++..........+.-
T Consensus        36 ~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~  115 (738)
T KOG1989|consen   36 SHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVW  115 (738)
T ss_pred             CEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCcee
Confidence            4668899999999999999999655 4999999997777778889999999999997 9999999994322121111123


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..+|+||||.||.|-+++..+....+++.+++.|+.++++|+.+||. ...+|||||||.+||||+.++..||||||.|.
T Consensus       116 EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~-~~pPiIHRDLKiENvLls~~g~~KLCDFGSat  194 (738)
T KOG1989|consen  116 EVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHY-LKPPIIHRDLKIENVLLSADGNYKLCDFGSAT  194 (738)
T ss_pred             EEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc-CCCccchhhhhhhheEEcCCCCEEeCcccccc
Confidence            56789999999999999986655579999999999999999999998 44569999999999999999999999999885


Q ss_pred             hccccc----------ccccccccccccCCCC
Q 028725          181 LAENAE----------KVGHVTPYSGSINPTN  202 (205)
Q Consensus       181 ~~~~~~----------~~~~~~~~~~~~aPE~  202 (205)
                      ..-...          .....-.|+.|.|||-
T Consensus       195 t~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEM  226 (738)
T KOG1989|consen  195 TKILSPTSAQEVNYVEEEIEKYTTPQYRSPEM  226 (738)
T ss_pred             cccCCCccHHHHHHHHHHHHhhCCccccChHH
Confidence            332221          1122367899999993

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.96  E-value=9.1e-32  Score=194.93  Aligned_cols=170  Identities=18%  Similarity=0.291  Sum_probs=148.0

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc--CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK--KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ..+|++.+.||+|.|+.|+++.+ .+|+.+++|.+...  .....+.+.+|+++.+.++||||+++......       .
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~-------~   82 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQE-------E   82 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcc-------c
Confidence            56789999999999999999994 56999999988654  35578889999999999999999999887654       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC---CCceeEcCC
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---NLVAKISSY  176 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~---~~~~~l~Df  176 (205)
                      ...|+|+|.+.|+.|..-|..+.  -+++.....+++||+++|.|+|.   .+|+|||+||+|+++.+   ...+||+||
T Consensus        83 ~~~ylvFe~m~G~dl~~eIV~R~--~ySEa~aSH~~rQiLeal~yCH~---n~IvHRDvkP~nllLASK~~~A~vKL~~F  157 (355)
T KOG0033|consen   83 SFHYLVFDLVTGGELFEDIVARE--FYSEADASHCIQQILEALAYCHS---NGIVHRDLKPENLLLASKAKGAAVKLADF  157 (355)
T ss_pred             ceeEEEEecccchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh---cCceeccCChhheeeeeccCCCceeeccc
Confidence            78999999999999988777653  67888899999999999999999   59999999999999963   346899999


Q ss_pred             CchhhcccccccccccccccccCCCCCC
Q 028725          177 NLPLLAENAEKVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       177 g~a~~~~~~~~~~~~~~~~~~~aPE~~~  204 (205)
                      |+|.......-.....||++|||||...
T Consensus       158 GvAi~l~~g~~~~G~~GtP~fmaPEvvr  185 (355)
T KOG0033|consen  158 GLAIEVNDGEAWHGFAGTPGYLSPEVLK  185 (355)
T ss_pred             ceEEEeCCccccccccCCCcccCHHHhh
Confidence            9999888666777789999999999753

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.96  E-value=2.7e-29  Score=191.23  Aligned_cols=171  Identities=20%  Similarity=0.359  Sum_probs=144.4

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ..++|++.+.||+|++|.||+|...++..+++|.+... ....+.+.+|+.+++.++|+||+++.+.+..       .+.
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~   75 (261)
T cd05072           4 PRESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPG-TMSVQAFLEEANLMKTLQHDKLVRLYAVVTK-------EEP   75 (261)
T ss_pred             chHHeEEeeecCCcCCceEEEEEecCCceEEEEEccCC-chhHHHHHHHHHHHHhCCCCCeeeEEEEEcC-------CCC
Confidence            35789999999999999999999777888999988643 2345678899999999999999999887754       567


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++|++++++|.+++.......+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        76 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~---~~i~H~dl~p~nili~~~~~~~l~dfg~~~~  152 (261)
T cd05072          76 IYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIER---KNYIHRDLRAANVLVSESLMCKIADFGLARV  152 (261)
T ss_pred             cEEEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchhhEEecCCCcEEECCCcccee
Confidence            8999999999999999876554578888999999999999999999   7999999999999999999999999999987


Q ss_pred             ccccccc--ccccccccccCCCCC
Q 028725          182 AENAEKV--GHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~~--~~~~~~~~~~aPE~~  203 (205)
                      .......  ....++..|+|||+.
T Consensus       153 ~~~~~~~~~~~~~~~~~y~aPE~~  176 (261)
T cd05072         153 IEDNEYTAREGAKFPIKWTAPEAI  176 (261)
T ss_pred             cCCCceeccCCCccceecCCHHHh
Confidence            6543221  122456689999964

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.96  E-value=7.8e-29  Score=188.25  Aligned_cols=169  Identities=18%  Similarity=0.316  Sum_probs=141.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      .++|++.+.||+|+||.||++.+.++..+++|.+... ......+.+|+.+++.++||||+++++.+..       ....
T Consensus         3 ~~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~~   74 (256)
T cd05114           3 PSELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEG-AMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQ-------QKPL   74 (256)
T ss_pred             HHHcEEeeEecCCcCceEEEEEeccCceEEEEecccC-CccHHHHHHHHHHHHHCCCCCceeEEEEEcc-------CCCE
Confidence            3568889999999999999999877778999988633 3345678889999999999999999998765       5678


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      +++|||+++++|.+++.... ..+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||+++..
T Consensus        75 ~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~  150 (256)
T cd05114          75 YIVTEFMENGCLLNYLRQRQ-GKLSKDMLLSMCQDVCEGMEYLER---NSFIHRDLAARNCLVSSTGVVKVSDFGMTRYV  150 (256)
T ss_pred             EEEEEcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHH---CCccccccCcceEEEcCCCeEEECCCCCcccc
Confidence            99999999999999887543 358899999999999999999999   79999999999999999999999999998765


Q ss_pred             cccccc--ccccccccccCCCCC
Q 028725          183 ENAEKV--GHVTPYSGSINPTNS  203 (205)
Q Consensus       183 ~~~~~~--~~~~~~~~~~aPE~~  203 (205)
                      ......  ....++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~y~aPE~~  173 (256)
T cd05114         151 LDDEYTSSSGAKFPVKWSPPEVF  173 (256)
T ss_pred             CCCceeccCCCCCchhhCChhhc
Confidence            433221  122445679999974

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.96  E-value=2.2e-29  Score=191.25  Aligned_cols=166  Identities=21%  Similarity=0.439  Sum_probs=141.7

Q ss_pred             CCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCH--HHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~--~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      |++.+.||+|+||.||++... +++.+|+|++........  ....+|+..++.++||||+++.+.+..       ....
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-------~~~~   73 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQD-------DNYL   73 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEE-------SSEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccccccccccccccccc-------cccc
Confidence            678899999999999999965 577899999986643322  233558999999999999999998877       6789


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      +++||++.+++|.+++...  ..+++..++.++.|++.+|.+||+   .+++|+||||+||++++++.++|+|||.+...
T Consensus        74 ~~v~~~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~Lh~---~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~  148 (260)
T PF00069_consen   74 YIVMEYCPGGSLQDYLQKN--KPLSEEEILKIAYQILEALAYLHS---KGIVHRDIKPENILLDENGEVKLIDFGSSVKL  148 (260)
T ss_dssp             EEEEEEETTEBHHHHHHHH--SSBBHHHHHHHHHHHHHHHHHHHH---TTEEESSBSGGGEEESTTSEEEESSGTTTEES
T ss_pred             ccccccccccccccccccc--cccccccccccccccccccccccc---cccccccccccccccccccccccccccccccc
Confidence            9999999999999999833  378999999999999999999999   79999999999999999999999999999753


Q ss_pred             -ccccccccccccccccCCCCC
Q 028725          183 -ENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       183 -~~~~~~~~~~~~~~~~aPE~~  203 (205)
                       ..........++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~  170 (260)
T PF00069_consen  149 SENNENFNPFVGTPEYMAPEVL  170 (260)
T ss_dssp             TSTTSEBSSSSSSGGGSCHHHH
T ss_pred             cccccccccccccccccccccc
Confidence             333444556889999999974

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.96  E-value=4.3e-29  Score=195.61  Aligned_cols=162  Identities=22%  Similarity=0.314  Sum_probs=135.8

Q ss_pred             eeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||+|+||.||++... +++.+|+|++++..   ......+.+|..++..+ +||||+++.+.+..       ....++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~-------~~~~~l   73 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQT-------KDRLFF   73 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEc-------CCEEEE
Confidence            46899999999999964 58899999997542   33455667788888877 69999999998765       568999


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ||||+++++|...+....  .+++.....++.|++.||.|||+   .+++||||||+||++++++.++|+|||+++....
T Consensus        74 v~e~~~~~~L~~~~~~~~--~l~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~  148 (318)
T cd05570          74 VMEYVNGGDLMFHIQRSG--RFDEPRARFYAAEIVLGLQFLHE---RGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGIL  148 (318)
T ss_pred             EEcCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeEccCCCHHHeEECCCCcEEecccCCCeecCc
Confidence            999999999999887653  68899999999999999999999   7999999999999999999999999999865322


Q ss_pred             -ccccccccccccccCCCCC
Q 028725          185 -AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 -~~~~~~~~~~~~~~aPE~~  203 (205)
                       ........++..|+|||..
T Consensus       149 ~~~~~~~~~g~~~y~aPE~~  168 (318)
T cd05570         149 GGVTTSTFCGTPDYIAPEIL  168 (318)
T ss_pred             CCCcccceecCccccCHHHh
Confidence             2233345789999999974

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>PHA02988 hypothetical protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=189.51  Aligned_cols=180  Identities=17%  Similarity=0.251  Sum_probs=144.5

Q ss_pred             CcccccCHHHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcC---HHHHHHHHHHHhccCCCccccc
Q 028725            9 PAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHS---TRNFMHHIELISKLRHCHLVSA   85 (205)
Q Consensus         9 ~~~~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~e~~~l~~l~~~~i~~~   85 (205)
                      .....++.+++     +......+++|+++.||+|.. +|+.||+|.++......   .+.+.+|+.++++++||||+++
T Consensus        10 ~~~~~i~~~~i-----~~~~~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~   83 (283)
T PHA02988         10 NDIKCIESDDI-----DKYTSVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKI   83 (283)
T ss_pred             CcceecCHHHc-----CCCCCeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            34444555444     222236789999999999998 58999999997654333   4677899999999999999999


Q ss_pred             ccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEe
Q 028725           86 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL  165 (205)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv  165 (205)
                      ++++.+..   ......++++||+++|+|.+++....  .+++.....++.+++.||.|||+.  .+++||||||+||++
T Consensus        84 ~g~~~~~~---~~~~~~~lv~Ey~~~g~L~~~l~~~~--~~~~~~~~~i~~~i~~~l~~lH~~--~~~~Hrdlkp~nill  156 (283)
T PHA02988         84 YGFIIDIV---DDLPRLSLILEYCTRGYLREVLDKEK--DLSFKTKLDMAIDCCKGLYNLYKY--TNKPYKNLTSVSFLV  156 (283)
T ss_pred             eeeEEecc---cCCCceEEEEEeCCCCcHHHHHhhCC--CCChhHHHHHHHHHHHHHHHHHhc--CCCCCCcCChhhEEE
Confidence            99875411   12346899999999999999997654  688889999999999999999973  478899999999999


Q ss_pred             CCCCceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          166 DQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       166 ~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ++++.++|+|||+++......  ....++..|+|||..
T Consensus       157 ~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~y~aPE~~  192 (283)
T PHA02988        157 TENYKLKIICHGLEKILSSPP--FKNVNFMVYFSYKML  192 (283)
T ss_pred             CCCCcEEEcccchHhhhcccc--ccccCcccccCHHHh
Confidence            999999999999998665432  234688899999975

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.4e-28  Score=187.19  Aligned_cols=171  Identities=19%  Similarity=0.363  Sum_probs=148.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      .++|++.+.||.|++|.||+|.. .+++.+++|++........+.+.+|+.+++.++|||++++.+.+..       ...
T Consensus         2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-------~~~   74 (262)
T cd06613           2 QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLR-------RDK   74 (262)
T ss_pred             ccceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEe-------CCE
Confidence            36799999999999999999995 4578899999987665667888999999999999999999988765       678


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .+++||++++++|.+++.... ..+++..+..++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        75 ~~l~~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~  150 (262)
T cd06613          75 LWIVMEYCGGGSLQDIYQVTR-GPLSELQIAYVCRETLKGLAYLHE---TGKIHRDIKGANILLTEDGDVKLADFGVSAQ  150 (262)
T ss_pred             EEEEEeCCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHh---CCceecCCChhhEEECCCCCEEECccccchh
Confidence            999999999999999887542 368899999999999999999999   7999999999999999999999999999976


Q ss_pred             ccccc-ccccccccccccCCCCCC
Q 028725          182 AENAE-KVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       182 ~~~~~-~~~~~~~~~~~~aPE~~~  204 (205)
                      ..... ......++..|+|||...
T Consensus       151 ~~~~~~~~~~~~~~~~y~~Pe~~~  174 (262)
T cd06613         151 LTATIAKRKSFIGTPYWMAPEVAA  174 (262)
T ss_pred             hhhhhhccccccCCccccCchhhc
Confidence            65433 333457888999999753

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.96  E-value=4.4e-29  Score=192.21  Aligned_cols=162  Identities=19%  Similarity=0.270  Sum_probs=134.6

Q ss_pred             eccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEEe
Q 028725           32 MGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE  107 (205)
Q Consensus        32 lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e  107 (205)
                      ||+|+||.||++.. .+++.+|+|.+....   ....+.+..|+.+++.++|+||+++.+.+..       ....+++||
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~-------~~~~~lv~e   73 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQT-------KTDLCLVMT   73 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcC-------CCeEEEEEe
Confidence            68999999999995 468899999986542   2233566789999999999999999887755       567999999


Q ss_pred             ecCCCcHHHhhcc--CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcccc
Q 028725          108 YVPNGTLRSWISG--HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENA  185 (205)
Q Consensus       108 ~~~~~~L~~~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~  185 (205)
                      |+++++|.+.+..  .....+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||++......
T Consensus        74 ~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~  150 (280)
T cd05608          74 IMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQ---RRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDG  150 (280)
T ss_pred             CCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEeeCccceecCCC
Confidence            9999999987743  222468899999999999999999999   79999999999999999999999999999765543


Q ss_pred             c-ccccccccccccCCCCC
Q 028725          186 E-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       186 ~-~~~~~~~~~~~~aPE~~  203 (205)
                      . ......++..|+|||..
T Consensus       151 ~~~~~~~~g~~~y~aPE~~  169 (280)
T cd05608         151 QSKTKGYAGTPGFMAPELL  169 (280)
T ss_pred             CccccccCCCcCccCHHHh
Confidence            3 22335789999999964

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.96  E-value=1.4e-29  Score=202.35  Aligned_cols=173  Identities=22%  Similarity=0.349  Sum_probs=139.0

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCcccccccceeee
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFEC   92 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~   92 (205)
                      -..++|++.+.||+|+||.||+|...      ++..||+|+++... ......+.+|+.+++.+ +|+||+++++.+.. 
T Consensus        35 ~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~-  113 (374)
T cd05106          35 FPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTH-  113 (374)
T ss_pred             ccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecC-
Confidence            33467999999999999999998842      23579999997543 23345678899999999 89999999998865 


Q ss_pred             cccCCCCCeEEEEEeecCCCcHHHhhccCC--------------------------------------------------
Q 028725           93 YFDDSSVSRIFLIFEYVPNGTLRSWISGHA--------------------------------------------------  122 (205)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--------------------------------------------------  122 (205)
                            ....+++|||+++|+|.+++....                                                  
T Consensus       114 ------~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (374)
T cd05106         114 ------GGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPV  187 (374)
T ss_pred             ------CCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCc
Confidence                  567899999999999999875321                                                  


Q ss_pred             ------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          123 ------------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       123 ------------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                                        ...+++..++.++.|++.||.|||+   .+++||||||+||++++++.++|+|||+++....
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~---~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~  264 (374)
T cd05106         188 SSSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLAS---KNCIHRDVAARNVLLTDGRVAKICDFGLARDIMN  264 (374)
T ss_pred             cccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCEEeccCchheEEEeCCCeEEEeeceeeeeccC
Confidence                              1246778889999999999999999   7999999999999999999999999999976544


Q ss_pred             cccc---ccccccccccCCCCC
Q 028725          185 AEKV---GHVTPYSGSINPTNS  203 (205)
Q Consensus       185 ~~~~---~~~~~~~~~~aPE~~  203 (205)
                      ....   ....++..|+|||+.
T Consensus       265 ~~~~~~~~~~~~~~~y~aPE~~  286 (374)
T cd05106         265 DSNYVVKGNARLPVKWMAPESI  286 (374)
T ss_pred             CcceeeccCCCCccceeCHHHh
Confidence            3211   112345679999964

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.96  E-value=7.9e-29  Score=197.46  Aligned_cols=174  Identities=15%  Similarity=0.173  Sum_probs=142.7

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ...++|++.+.||+|+||.||++.. .+++.+|+|++....  ......+.+|+.+++.++||||+++.+++...... .
T Consensus        21 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~-~   99 (364)
T cd07875          21 TVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSL-E   99 (364)
T ss_pred             chhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccc-c
Confidence            3468999999999999999999995 458899999997542  33456678899999999999999998876542111 1


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      .....++||||+.+ +|.+.+..    .+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||
T Consensus       100 ~~~~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG  171 (364)
T cd07875         100 EFQDVYIVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFG  171 (364)
T ss_pred             ccCeEEEEEeCCCC-CHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhh---CCeecCCCCHHHEEECCCCcEEEEeCC
Confidence            23468999999965 77777653    47788889999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccccccccccccccCCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +++............+|..|+|||..
T Consensus       172 ~a~~~~~~~~~~~~~~t~~y~aPE~~  197 (364)
T cd07875         172 LARTAGTSFMMTPYVVTRYYRAPEVI  197 (364)
T ss_pred             CccccCCCCcccCCcccCCcCCHHHH
Confidence            99876655444556889999999964

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.96  E-value=7.9e-29  Score=191.74  Aligned_cols=172  Identities=17%  Similarity=0.352  Sum_probs=146.0

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ...++|++.+.||.|+||.||+|... +++.+++|.+..........+.+|+.+++.++|||++++.+.+..       .
T Consensus         9 ~~~~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~   81 (292)
T cd06644           9 DPNEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYW-------D   81 (292)
T ss_pred             CcchhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEe-------C
Confidence            34567999999999999999999954 588999999976655567778889999999999999999998765       5


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +..+++|||+++++|..++.... ..+++..+..++.|++.++.|||+   .+++|+||+|+||+++.++.++|+|||++
T Consensus        82 ~~~~lv~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~dfg~~  157 (292)
T cd06644          82 GKLWIMIEFCPGGAVDAIMLELD-RGLTEPQIQVICRQMLEALQYLHS---MKIIHRDLKAGNVLLTLDGDIKLADFGVS  157 (292)
T ss_pred             CeEEEEEecCCCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHhc---CCeeecCCCcceEEEcCCCCEEEccCccc
Confidence            68999999999999988775433 368899999999999999999999   79999999999999999999999999988


Q ss_pred             hhcccc-cccccccccccccCCCCC
Q 028725          180 LLAENA-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~-~~~~~~~~~~~~~aPE~~  203 (205)
                      ...... .......++..|+|||..
T Consensus       158 ~~~~~~~~~~~~~~~~~~y~aPE~~  182 (292)
T cd06644         158 AKNVKTLQRRDSFIGTPYWMAPEVV  182 (292)
T ss_pred             eeccccccccceecCCccccCceee
Confidence            654332 222335788899999964

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.96  E-value=1e-28  Score=195.29  Aligned_cols=173  Identities=13%  Similarity=0.239  Sum_probs=141.8

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ...++|++.+.||+|+||.||+|.. .+++.||+|.+....  ......+.+|+.+++.++||||+++.+++..... ..
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-~~   90 (343)
T cd07878          12 EVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATS-IE   90 (343)
T ss_pred             hhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccc-cc
Confidence            4568899999999999999999994 568899999987542  2234567789999999999999999987753211 11


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      .....+++++++ +++|.+++...   .+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||
T Consensus        91 ~~~~~~~~~~~~-~~~l~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrdikp~Nil~~~~~~~kl~Dfg  163 (343)
T cd07878          91 NFNEVYLVTNLM-GADLNNIVKCQ---KLSDEHVQFLIYQLLRGLKYIHS---AGIIHRDLKPSNVAVNEDCELRILDFG  163 (343)
T ss_pred             ccCcEEEEeecC-CCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHH---CCeecccCChhhEEECCCCCEEEcCCc
Confidence            234578999988 67998877643   58899999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccccccccccccccCCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ++......  .....+|..|+|||..
T Consensus       164 ~~~~~~~~--~~~~~~t~~y~aPE~~  187 (343)
T cd07878         164 LARQADDE--MTGYVATRWYRAPEIM  187 (343)
T ss_pred             cceecCCC--cCCccccccccCchHh
Confidence            99866543  2335789999999964

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.96  E-value=1.1e-28  Score=192.44  Aligned_cols=168  Identities=13%  Similarity=0.252  Sum_probs=142.9

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ++|++.+.||+|+||.||++... ++..+++|.++... ......+.+|++++++++||||+++.+.+..       .+.
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~~   73 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYS-------DGE   73 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEee-------CCE
Confidence            46899999999999999999954 58889999886542 2234567889999999999999999998876       678


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++||+++++|.+++....  .+++.....++.|++.||.|||+.  .+++|+||+|+||++++++.++|+|||++..
T Consensus        74 ~~lv~ey~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  149 (308)
T cd06615          74 ISICMEHMDGGSLDQVLKKAG--RIPENILGKISIAVLRGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQ  149 (308)
T ss_pred             EEEEeeccCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhh--CCEEECCCChHHEEEecCCcEEEccCCCccc
Confidence            999999999999999987653  688899999999999999999973  4899999999999999999999999999876


Q ss_pred             cccccccccccccccccCCCCC
Q 028725          182 AENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ..... .....++..|+|||..
T Consensus       150 ~~~~~-~~~~~~~~~~~aPE~~  170 (308)
T cd06615         150 LIDSM-ANSFVGTRSYMSPERL  170 (308)
T ss_pred             ccccc-cccCCCCcCccChhHh
Confidence            54432 2335788999999964

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.5e-28  Score=187.18  Aligned_cols=168  Identities=18%  Similarity=0.308  Sum_probs=142.2

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCC-----cCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS-----HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~-----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ++|.+.+.||+|++|.||.+.. .+++++++|.+.....     .....+.+|+.+++.++||||+++.+.+..      
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~------   75 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRD------   75 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEcc------
Confidence            5799999999999999999994 4689999999864421     234567889999999999999999998865      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ....++++|++++++|.+.+....  .+++.....++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||
T Consensus        76 -~~~~~~v~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nilv~~~~~~~l~dfg  149 (263)
T cd06625          76 -DETLSIFMEYMPGGSVKDQLKAYG--ALTETVTRKYTRQILEGVEYLHS---NMIVHRDIKGANILRDSAGNVKLGDFG  149 (263)
T ss_pred             -CCeEEEEEEECCCCcHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeecc
Confidence             568999999999999999987653  67888899999999999999999   799999999999999999999999999


Q ss_pred             chhhccccccc----ccccccccccCCCCC
Q 028725          178 LPLLAENAEKV----GHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~----~~~~~~~~~~aPE~~  203 (205)
                      +++........    ....++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  179 (263)
T cd06625         150 ASKRLQTICSSGTGMKSVTGTPYWMSPEVI  179 (263)
T ss_pred             cceeccccccccccccCCCcCccccCccee
Confidence            98755432211    234677899999974

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.96  E-value=8.8e-29  Score=197.74  Aligned_cols=171  Identities=18%  Similarity=0.286  Sum_probs=138.9

Q ss_pred             CCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +|++.+.||+|+||.||++.. .+++.||+|.+....  ......+.+|+.+++.++|+||+++.+.+.....  .....
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~--~~~~~   78 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHI--DPFEE   78 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCc--cccce
Confidence            478899999999999999995 468999999986432  2334567889999999999999999998765211  11236


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++||+. ++|.+.+....  .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++.
T Consensus        79 ~~lv~e~~~-~~l~~~~~~~~--~l~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~  152 (372)
T cd07853          79 IYVVTELMQ-SDLHKIIVSPQ--PLSSDHVKVFLYQILRGLKYLHS---AGILHRDIKPGNLLVNSNCVLKICDFGLARV  152 (372)
T ss_pred             EEEEeeccc-cCHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChHHEEECCCCCEEeccccceee
Confidence            899999996 48888776543  68899999999999999999999   7999999999999999999999999999976


Q ss_pred             ccccc--ccccccccccccCCCCC
Q 028725          182 AENAE--KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~--~~~~~~~~~~~~aPE~~  203 (205)
                      .....  ......++..|+|||..
T Consensus       153 ~~~~~~~~~~~~~~~~~y~aPE~~  176 (372)
T cd07853         153 EEPDESKHMTQEVVTQYYRAPEIL  176 (372)
T ss_pred             cccCccccCCCCCcCCCcCCHHHH
Confidence            54332  22234678899999963

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.96  E-value=6.5e-29  Score=189.47  Aligned_cols=170  Identities=24%  Similarity=0.399  Sum_probs=141.6

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ..++|++.+.||+|++|.||+|...++..+++|.++... .....+.+|+.+++.++||||+++.+.+.        ...
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~~~~--------~~~   74 (262)
T cd05071           4 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS--------EEP   74 (262)
T ss_pred             ChHHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCc-cCHHHHHHHHHHHHhCCCCCcceEEEEEC--------CCC
Confidence            356799999999999999999997666679999997433 34467889999999999999999987653        245


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .+++||++++++|.+++.......+++..+..++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||.+..
T Consensus        75 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~  151 (262)
T cd05071          75 IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARL  151 (262)
T ss_pred             cEEEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHH---CCccccccCcccEEEcCCCcEEeccCCceee
Confidence            7899999999999999986544467889999999999999999999   7999999999999999999999999999976


Q ss_pred             ccccccc--ccccccccccCCCCC
Q 028725          182 AENAEKV--GHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~~--~~~~~~~~~~aPE~~  203 (205)
                      .......  ....++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~y~~PE~~  175 (262)
T cd05071         152 IEDNEYTARQGAKFPIKWTAPEAA  175 (262)
T ss_pred             ccccccccccCCcccceecCHhHh
Confidence            6543321  123456679999964

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=1.2e-28  Score=187.25  Aligned_cols=168  Identities=23%  Similarity=0.466  Sum_probs=145.2

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ..++|++.+.||.|++|.||+|... |+.+++|.++.... ..+.+.+|+.+++.++|+|++++.+.+.+       .+.
T Consensus         4 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~   74 (256)
T cd05039           4 NSKELKLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQ-------GNP   74 (256)
T ss_pred             ChhhccceeeeecCCCceEEEEEec-CcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEcC-------CCC
Confidence            3578999999999999999999875 78999999975543 56778899999999999999999998765       567


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++|++++++|.+++.......+++..+..++.|++.++.|||+   .+++|+||+|+||+++.++.++|+|||.++.
T Consensus        75 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~---~~i~H~di~p~Nili~~~~~~~l~d~g~~~~  151 (256)
T cd05039          75 LYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEE---KNFVHRDLAARNVLVSEDLVAKVSDFGLAKE  151 (256)
T ss_pred             eEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCccchhcccceEEEeCCCCEEEcccccccc
Confidence            8999999999999999986654568999999999999999999999   7999999999999999999999999999987


Q ss_pred             cccccccccccccccccCCCCC
Q 028725          182 AENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ......  ....+..|+|||+.
T Consensus       152 ~~~~~~--~~~~~~~~~ape~~  171 (256)
T cd05039         152 ASQGQD--SGKLPVKWTAPEAL  171 (256)
T ss_pred             cccccc--cCCCcccccCchhh
Confidence            643222  23556789999964

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.96  E-value=1.8e-28  Score=187.21  Aligned_cols=170  Identities=18%  Similarity=0.281  Sum_probs=140.7

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC-----CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK-----SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ++|.+.+.||+|+||.||.+.. .++..|++|.+....     ......+.+|+.+++.++||||+++.+.+.+     .
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~   76 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRD-----P   76 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEecc-----C
Confidence            6899999999999999999995 458899999885432     1224567889999999999999999887644     2


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      ....+++++|++++++|.+++....  .+++.....++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||
T Consensus        77 ~~~~~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~l~Dfg  151 (265)
T cd06652          77 MERTLSIFMEHMPGGSIKDQLKSYG--ALTENVTRKYTRQILEGVSYLHS---NMIVHRDIKGANILRDSVGNVKLGDFG  151 (265)
T ss_pred             CCceEEEEEEecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEecCCCCEEECcCc
Confidence            2356889999999999999987553  57888889999999999999999   799999999999999999999999999


Q ss_pred             chhhcccc----cccccccccccccCCCCC
Q 028725          178 LPLLAENA----EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~----~~~~~~~~~~~~~aPE~~  203 (205)
                      ++......    .......++..|+|||+.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  181 (265)
T cd06652         152 ASKRLQTICLSGTGMKSVTGTPYWMSPEVI  181 (265)
T ss_pred             cccccccccccccccccCCCCccccChhhh
Confidence            99755432    122334688899999974

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.96  E-value=1.7e-28  Score=190.40  Aligned_cols=169  Identities=16%  Similarity=0.307  Sum_probs=145.8

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ..+|++.+.||+|++|.||+|.. .+++.+++|.+........+.+.+|+.+++.+.|+|++++.+.+..       ...
T Consensus        19 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~-------~~~   91 (296)
T cd06654          19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-------GDE   91 (296)
T ss_pred             ccceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEe-------CCE
Confidence            46899999999999999999995 4688999999987666666778899999999999999999998865       568


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++|+||+++++|.+++...   .+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++..
T Consensus        92 ~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~i~~ql~~aL~~LH~---~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~  165 (296)
T cd06654          92 LWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQ  165 (296)
T ss_pred             EEEeecccCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCCEEECccccchh
Confidence            99999999999999988643   57888999999999999999999   7999999999999999999999999999876


Q ss_pred             ccccc-ccccccccccccCCCCCC
Q 028725          182 AENAE-KVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       182 ~~~~~-~~~~~~~~~~~~aPE~~~  204 (205)
                      ..... ......++..|+|||...
T Consensus       166 ~~~~~~~~~~~~~~~~y~aPE~~~  189 (296)
T cd06654         166 ITPEQSKRSTMVGTPYWMAPEVVT  189 (296)
T ss_pred             ccccccccCcccCCccccCHHHHc
Confidence            54332 223347888999999653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.96  E-value=8.9e-29  Score=188.51  Aligned_cols=165  Identities=30%  Similarity=0.514  Sum_probs=135.6

Q ss_pred             cceeeccCcceEEEEEEec-----CCcEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           28 TSAFMGEGSKGQMYRGRLK-----NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        28 ~~~~lg~g~~g~V~~~~~~-----~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +.+.||.|.||.||+|.+.     .+..|++|.++.... ...+.+.+|++.+++++||||+++.+++..       .+.
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~-------~~~   75 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIE-------NEP   75 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEES-------SSS
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccc-------ccc
Confidence            4678999999999999976     256899999965432 346789999999999999999999999985       456


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++|+||+++|+|.+++.......+++..++.++.|++.||.|||+   .+++|+||+++||++++++.+||+|||++..
T Consensus        76 ~~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~---~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~  152 (259)
T PF07714_consen   76 LFLVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHS---NNIIHGNLSPSNILLDSNGQVKLSDFGLSRP  152 (259)
T ss_dssp             EEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHH---TTEEEST-SGGGEEEETTTEEEEESTTTGEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccc
Confidence            9999999999999999997744689999999999999999999999   7999999999999999999999999999987


Q ss_pred             ccccc---ccccccccccccCCCC
Q 028725          182 AENAE---KVGHVTPYSGSINPTN  202 (205)
Q Consensus       182 ~~~~~---~~~~~~~~~~~~aPE~  202 (205)
                      .....   ..........|+|||.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~aPE~  176 (259)
T PF07714_consen  153 ISEKSKYKNDSSQQLPLRYLAPEV  176 (259)
T ss_dssp             TTTSSSEEESTTSESGGGGS-HHH
T ss_pred             cccccccccccccccccccccccc
Confidence            63221   2233466778999996

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.96  E-value=6.7e-29  Score=199.76  Aligned_cols=174  Identities=23%  Similarity=0.367  Sum_probs=140.4

Q ss_pred             HHHhcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccC-CcCHHHHHHHHHHHhccC-CCcccccccceee
Q 028725           20 EEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLR-HCHLVSALGHCFE   91 (205)
Q Consensus        20 ~~~~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~   91 (205)
                      ....++|.+++.||+|+||.||+|...      ++..||+|+++... ....+.+.+|+.+++.+. ||||+++++.+..
T Consensus        33 ~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~  112 (400)
T cd05105          33 EFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTK  112 (400)
T ss_pred             eccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEcc
Confidence            344678999999999999999999852      13479999996543 233467889999999996 9999999998865


Q ss_pred             ecccCCCCCeEEEEEeecCCCcHHHhhccCC-------------------------------------------------
Q 028725           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISGHA-------------------------------------------------  122 (205)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-------------------------------------------------  122 (205)
                             .+..++||||+++|+|.+++....                                                 
T Consensus       113 -------~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (400)
T cd05105         113 -------SGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADT  185 (400)
T ss_pred             -------CCceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccc
Confidence                   567999999999999998875321                                                 


Q ss_pred             ---------------------------------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecC
Q 028725          123 ---------------------------------------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNN  157 (205)
Q Consensus       123 ---------------------------------------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~d  157 (205)
                                                                   ...+++..+..++.|++.||.|||+   .+++|+|
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivH~d  262 (400)
T cd05105         186 TQYVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLAS---KNCVHRD  262 (400)
T ss_pred             cccchhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCC
Confidence                                                         1246777888999999999999999   7999999


Q ss_pred             CccccEEeCCCCceeEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          158 LKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       158 lkp~nilv~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      |||+||++++++.++|+|||+++.......   .....++..|+|||..
T Consensus       263 ikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~  311 (400)
T cd05105         263 LAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESI  311 (400)
T ss_pred             CChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhh
Confidence            999999999999999999999976544322   1223456789999964

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.96  E-value=2e-28  Score=185.81  Aligned_cols=169  Identities=17%  Similarity=0.228  Sum_probs=144.1

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc-CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      +|++.+.||.|+||.||++... +++.+++|.++.. .....+.+.+|+.+++.++|+|++++.+.+.+       ....
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~~   73 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEA-------DGHL   73 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEE-------CCEE
Confidence            5889999999999999999954 6889999998644 23455678889999999999999999998765       6789


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      ++++||+++++|.+++.......+++.....++.|++.||.|||+   .+++|+||+|+||++++++.++++|||.+...
T Consensus        74 ~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~---~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~  150 (255)
T cd08219          74 YIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHE---KRVLHRDIKSKNIFLTQNGKVKLGDFGSARLL  150 (255)
T ss_pred             EEEEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCcceEEECCCCcEEEcccCcceee
Confidence            999999999999998875544568899999999999999999999   79999999999999999999999999999766


Q ss_pred             cccc-ccccccccccccCCCCC
Q 028725          183 ENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       183 ~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      .... ......++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~aPE~~  172 (255)
T cd08219         151 TSPGAYACTYVGTPYYVPPEIW  172 (255)
T ss_pred             cccccccccccCCccccCHHHH
Confidence            5433 22335788899999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.4e-30  Score=210.10  Aligned_cols=170  Identities=16%  Similarity=0.313  Sum_probs=149.2

Q ss_pred             hcCCCcceeeccCcceEEEEEEecC-CcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~-~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ...|.++..||.|+||.||+|..++ +...|.|++...+....+++.-|+++|..|+||+|+++++.++.       .+.
T Consensus        31 ~d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~-------enk  103 (1187)
T KOG0579|consen   31 RDHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYF-------ENK  103 (1187)
T ss_pred             HHHHHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhc-------cCc
Confidence            3458889999999999999999664 55667899988888889999999999999999999999998876       689


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      +|+++|+|.||.....+..-+ ..+++..+..+++|++.||.|||+   ..|||||||+.|||+..+|.++|+|||.+..
T Consensus       104 LwiliEFC~GGAVDaimlEL~-r~LtE~QIqvvc~q~ldALn~LHs---~~iIHRDLKAGNiL~TldGdirLADFGVSAK  179 (1187)
T KOG0579|consen  104 LWILIEFCGGGAVDAIMLELG-RVLTEDQIQVVCYQVLDALNWLHS---QNIIHRDLKAGNILLTLDGDIRLADFGVSAK  179 (1187)
T ss_pred             eEEEEeecCCchHhHHHHHhc-cccchHHHHHHHHHHHHHHHHHhh---cchhhhhccccceEEEecCcEeeeccccccc
Confidence            999999999999988876443 479999999999999999999999   7999999999999999999999999998753


Q ss_pred             c-ccccccccccccccccCCCCC
Q 028725          182 A-ENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~-~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      . ....+.....||++|||||..
T Consensus       180 n~~t~qkRDsFIGTPYWMAPEVv  202 (1187)
T KOG0579|consen  180 NKSTRQKRDSFIGTPYWMAPEVV  202 (1187)
T ss_pred             chhHHhhhccccCCcccccchhe
Confidence            3 334456668999999999974

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.96  E-value=1e-28  Score=188.33  Aligned_cols=170  Identities=18%  Similarity=0.343  Sum_probs=143.0

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ...|.+.+.||+|++|.||+|... ++..+++|.++.. ......+.+|+.+++.++||||+++.+.+..       .+.
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~   76 (263)
T cd05052           5 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-------EPP   76 (263)
T ss_pred             hHHeEEeeecCCcccceEEEEEEecCCceEEEEEecCC-chHHHHHHHHHHHHHhCCCCChhheEEEEcC-------CCC
Confidence            456888999999999999999954 5888999998743 3445678899999999999999999998765       567


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++||+++++|.+++.......+++..++.++.|++.+|.|||+   .+++|+||||+||++++++.++|+|||++..
T Consensus        77 ~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~nil~~~~~~~kl~df~~~~~  153 (263)
T cd05052          77 FYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRL  153 (263)
T ss_pred             cEEEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccCcceEEEcCCCcEEeCCCccccc
Confidence            8999999999999999876554568999999999999999999999   7999999999999999999999999999987


Q ss_pred             cccccccc--cccccccccCCCCC
Q 028725          182 AENAEKVG--HVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~~~--~~~~~~~~~aPE~~  203 (205)
                      ........  ....+..|+|||..
T Consensus       154 ~~~~~~~~~~~~~~~~~y~aPE~~  177 (263)
T cd05052         154 MTGDTYTAHAGAKFPIKWTAPESL  177 (263)
T ss_pred             cccceeeccCCCCCccccCCHHHh
Confidence            66543221  12335679999953

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.96  E-value=1.4e-28  Score=187.07  Aligned_cols=169  Identities=21%  Similarity=0.331  Sum_probs=141.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      ..+|.+.+.||+|++|.||.|.+.++..+++|.++.. ....+.+.+|+.+++.++||||+++.+++..       ....
T Consensus         3 ~~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~~   74 (256)
T cd05113           3 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMKLSHEKLVQLYGVCTK-------QRPI   74 (256)
T ss_pred             hHHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCC-cccHHHHHHHHHHHhcCCCCCeeeEEEEEcc-------CCCc
Confidence            3568899999999999999999876677999988743 3345678899999999999999999998765       4568


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      +++|||+.+++|.+++.... ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||.++..
T Consensus        75 ~lv~e~~~~~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~  150 (256)
T cd05113          75 YIVTEYMSNGCLLNYLREHG-KRFQPSQLLEMCKDVCEGMAYLES---KQFIHRDLAARNCLVDDQGCVKVSDFGLSRYV  150 (256)
T ss_pred             EEEEEcCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccCcceEEEcCCCCEEECCCccceec
Confidence            99999999999999987543 368899999999999999999999   79999999999999999999999999998765


Q ss_pred             cccccc--ccccccccccCCCCC
Q 028725          183 ENAEKV--GHVTPYSGSINPTNS  203 (205)
Q Consensus       183 ~~~~~~--~~~~~~~~~~aPE~~  203 (205)
                      ..+...  ....++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~y~~pe~~  173 (256)
T cd05113         151 LDDEYTSSVGSKFPVRWSPPEVL  173 (256)
T ss_pred             CCCceeecCCCccChhhCCHHHH
Confidence            443321  122455679999964

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.96  E-value=1.6e-28  Score=186.21  Aligned_cols=169  Identities=17%  Similarity=0.293  Sum_probs=144.9

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +|.+.+.||+|++|.||+|... ++..+++|.+....  ......+.+|+.+++.++|||++++.+.+..       ...
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~   73 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLD-------KGK   73 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeecc-------CCE
Confidence            4788899999999999999954 68899999986542  3446678889999999999999999998865       568


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++||+++++|.+++.......+++..++.++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        74 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~---~~i~h~dl~~~nili~~~~~~~l~df~~~~~  150 (256)
T cd08529          74 LNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHS---KKILHRDIKSLNLFLDAYDNVKIGDLGVAKL  150 (256)
T ss_pred             EEEEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEEeCCCCEEEccccccee
Confidence            9999999999999999986544578899999999999999999999   7999999999999999999999999999876


Q ss_pred             cccccc-cccccccccccCCCCC
Q 028725          182 AENAEK-VGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~-~~~~~~~~~~~aPE~~  203 (205)
                      ...... .....++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~y~aPE~~  173 (256)
T cd08529         151 LSDNTNFANTIVGTPYYLSPELC  173 (256)
T ss_pred             ccCccchhhccccCccccCHHHh
Confidence            654332 2334788899999964

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.96  E-value=1.6e-28  Score=190.62  Aligned_cols=170  Identities=15%  Similarity=0.293  Sum_probs=146.3

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ...+|++.+.||+|++|.||++.. .+++.|++|.+........+.+.+|+.+++.++|+|++++.+.+..       ..
T Consensus        17 ~~~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-------~~   89 (297)
T cd06656          17 PKKKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-------GD   89 (297)
T ss_pred             hhhhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEec-------CC
Confidence            347899999999999999999995 4689999999976655566778889999999999999999998865       56


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++++||+++++|.+++...   .+++..+..++.|++.+|.|||+   .+++|+||+|+||+++.++.++|+|||++.
T Consensus        90 ~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~l~~~L~~LH~---~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~  163 (297)
T cd06656          90 ELWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALDFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCA  163 (297)
T ss_pred             EEEEeecccCCCCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEECcCccce
Confidence            899999999999999998653   57888899999999999999999   799999999999999999999999999987


Q ss_pred             hcccccc-cccccccccccCCCCCC
Q 028725          181 LAENAEK-VGHVTPYSGSINPTNSA  204 (205)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~~aPE~~~  204 (205)
                      ....... .....++..|+|||...
T Consensus       164 ~~~~~~~~~~~~~~~~~y~aPE~~~  188 (297)
T cd06656         164 QITPEQSKRSTMVGTPYWMAPEVVT  188 (297)
T ss_pred             EccCCccCcCcccCCccccCHHHHc
Confidence            6544322 22347888999999753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.96  E-value=4.7e-29  Score=192.04  Aligned_cols=148  Identities=20%  Similarity=0.300  Sum_probs=134.5

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ..++|++++.||.|.-|.||++... ++..+|+|+++++.   .........|-++|+.++||.++.++..+..      
T Consensus        75 ~l~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet------  148 (459)
T KOG0610|consen   75 GLRHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFET------  148 (459)
T ss_pred             CHHHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeec------
Confidence            4467899999999999999999965 46899999998763   3445566779999999999999999998865      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ....+++||||+||+|..+.+++++..+++..+..++.+++.||.|||.   +||++|||||+||||.++|.+.|+||.
T Consensus       149 -~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHm---lGivYRDLKPENILvredGHIMLsDFD  224 (459)
T KOG0610|consen  149 -DKYSCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHM---LGIVYRDLKPENILVREDGHIMLSDFD  224 (459)
T ss_pred             -cceeEEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHh---hceeeccCCcceeEEecCCcEEeeecc
Confidence             7789999999999999999999988899999999999999999999999   899999999999999999999999999


Q ss_pred             ch
Q 028725          178 LP  179 (205)
Q Consensus       178 ~a  179 (205)
                      ++
T Consensus       225 LS  226 (459)
T KOG0610|consen  225 LS  226 (459)
T ss_pred             cc
Confidence            87

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=2.2e-28  Score=191.30  Aligned_cols=150  Identities=22%  Similarity=0.386  Sum_probs=132.2

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCc---CHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH---STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|+..+.||+|++|.||+|... +++.+++|.+......   ....+.+|++.++.++|+||+++.+.+..       .
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~   73 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQT-------E   73 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeec-------C
Confidence            47899999999999999999964 5899999999765322   45668889999999999999999988765       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++++|++.+++|.+++.......+++.....++.|++.+|.|||+   .+++|+||||+||++++++.++|+|||++
T Consensus        74 ~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~~  150 (316)
T cd05574          74 TYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHL---LGIVYRDLKPENILLHESGHIMLSDFDLS  150 (316)
T ss_pred             CEEEEEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHH---CCeeccCCChHHeEEcCCCCEEEeecchh
Confidence            689999999999999999886555678999999999999999999999   79999999999999999999999999998


Q ss_pred             hhcc
Q 028725          180 LLAE  183 (205)
Q Consensus       180 ~~~~  183 (205)
                      ....
T Consensus       151 ~~~~  154 (316)
T cd05574         151 KQSD  154 (316)
T ss_pred             hccc
Confidence            6554

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.96  E-value=2.4e-28  Score=185.47  Aligned_cols=169  Identities=15%  Similarity=0.301  Sum_probs=145.8

Q ss_pred             CCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +|+..+.||.|+||.||.+. ..++..+++|.+....  ......+.+|+.++++++|+||+++.+.+.+       ...
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-------~~~   73 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMD-------DNT   73 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEec-------CCe
Confidence            58999999999999999999 4468899999986542  3445678899999999999999999998876       568


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++||+++++|.+++.......+++..+..++.|++.++.|||+   .+++|+||+|+||+++.++.++|+|||++..
T Consensus        74 ~~~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~  150 (256)
T cd08221          74 LLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHK---AGILHRDIKTLNIFLTKAGLIKLGDFGISKI  150 (256)
T ss_pred             EEEEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHh---CCccccCCChHhEEEeCCCCEEECcCcceEE
Confidence            9999999999999999986644578999999999999999999999   7999999999999999999999999999976


Q ss_pred             ccccc-ccccccccccccCCCCC
Q 028725          182 AENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ..... ......++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~y~ape~~  173 (256)
T cd08221         151 LGSEYSMAETVVGTPYYMSPELC  173 (256)
T ss_pred             cccccccccccCCCccccCHhhc
Confidence            65433 33445788999999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=7.1e-29  Score=190.80  Aligned_cols=170  Identities=20%  Similarity=0.368  Sum_probs=146.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      .++|++.+.||.|++|.||++... ++..+++|+++.......+.+.+|+.+++.++|||++++.+.+..       ...
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~   76 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFY-------ENK   76 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEec-------CCe
Confidence            467999999999999999999964 688999999976655566778899999999999999999998865       568


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .+++|||+++++|.+++.... ..+++..+..++.|++.+|.|||+   .+++|+||+|+||+++.++.++|+|||++..
T Consensus        77 ~~lv~e~~~~~~L~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~nili~~~~~~~l~d~g~~~~  152 (280)
T cd06611          77 LWILIEFCDGGALDSIMLELE-RGLTEPQIRYVCRQMLEALNFLHS---HKVIHRDLKAGNILLTLDGDVKLADFGVSAK  152 (280)
T ss_pred             EEEEeeccCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEECCCCCEEEccCccchh
Confidence            999999999999999887543 368999999999999999999999   7999999999999999999999999998865


Q ss_pred             cccc-cccccccccccccCCCCC
Q 028725          182 AENA-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~-~~~~~~~~~~~~~aPE~~  203 (205)
                      .... .......++..|+|||..
T Consensus       153 ~~~~~~~~~~~~~~~~y~~PE~~  175 (280)
T cd06611         153 NKSTLQKRDTFIGTPYWMAPEVV  175 (280)
T ss_pred             hcccccccceeecchhhcCHHHH
Confidence            5432 223335788999999964

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.96  E-value=1.4e-28  Score=188.23  Aligned_cols=178  Identities=17%  Similarity=0.328  Sum_probs=146.8

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ...+.|++.+.||+|+||.||+|... ++..+++|++.... .....+.+|+.++..+ +|+|++++.+.+...... ..
T Consensus         3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~-~~   80 (272)
T cd06637           3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP-GM   80 (272)
T ss_pred             ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC-ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCC-CC
Confidence            35678999999999999999999954 58889999987543 4456778899999988 699999999988653221 11


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....++++||+++++|.+++.......+++..+..++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|||+
T Consensus        81 ~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~---~~ivh~dl~~~nili~~~~~~~l~Dfg~  157 (272)
T cd06637          81 DDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQ---HKVIHRDIKGQNVLLTENAEVKLVDFGV  157 (272)
T ss_pred             CcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHEEECCCCCEEEccCCC
Confidence            3568999999999999999886544568899999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccc-cccccccccccccCCCCC
Q 028725          179 PLLAENA-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~-~~~~~~~~~~~~~aPE~~  203 (205)
                      +...... .......++..|+|||..
T Consensus       158 ~~~~~~~~~~~~~~~g~~~y~aPE~~  183 (272)
T cd06637         158 SAQLDRTVGRRNTFIGTPYWMAPEVI  183 (272)
T ss_pred             ceecccccccCCcccccccccCHhHh
Confidence            9765432 233345788999999964

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.96  E-value=8.1e-29  Score=212.92  Aligned_cols=179  Identities=14%  Similarity=0.268  Sum_probs=145.8

Q ss_pred             HHHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           20 EEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        20 ~~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      ....++|.+.+.||.|+||.||+|... ++..+++|.+....  ......+..|+.+++.++||||+++++.+..     
T Consensus         9 e~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~d-----   83 (1021)
T PTZ00266          9 ESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLN-----   83 (1021)
T ss_pred             ccccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEe-----
Confidence            345679999999999999999999954 57789999987542  2345678899999999999999999987765     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccC--CCCCCCHHHHHHHHHHHHHHHHHhhcCC----CCceeecCCccccEEeCCC--
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGH--AWQSLTWTQRISAAIGVARGIQFLHTGI----VPGVFSNNLKITDILLDQN--  168 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lh~~~----~~~i~h~dlkp~nilv~~~--  168 (205)
                      .....+|+||||+++++|.+++...  ....+++..++.|+.||+.||.|||...    ..+|+|+||||+||+|+..  
T Consensus        84 e~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~  163 (1021)
T PTZ00266         84 KANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIR  163 (1021)
T ss_pred             cCCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCcc
Confidence            2345789999999999999998742  2246899999999999999999999831    0259999999999999642  


Q ss_pred             ---------------CceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          169 ---------------LVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       169 ---------------~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                                     +.++|+|||++.............+|+.|+|||..
T Consensus       164 ~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL  213 (1021)
T PTZ00266        164 HIGKITAQANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELL  213 (1021)
T ss_pred             ccccccccccccCCCCceEEccCCccccccccccccccCCCccccCHHHH
Confidence                           34899999999876654444556899999999964

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.96  E-value=6.6e-29  Score=196.02  Aligned_cols=175  Identities=22%  Similarity=0.365  Sum_probs=140.4

Q ss_pred             HHHhcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCcccccccceee
Q 028725           20 EEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFE   91 (205)
Q Consensus        20 ~~~~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~   91 (205)
                      ....++|++.+.||+|+||.||+|...      +++.||+|+++... ......+..|+.++..+ +|+||+++.+.|..
T Consensus         3 ~~~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~   82 (337)
T cd05054           3 EFPRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTK   82 (337)
T ss_pred             ccCHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEec
Confidence            334568999999999999999999632      35789999987443 22345677899999999 79999999998764


Q ss_pred             ecccCCCCCeEEEEEeecCCCcHHHhhccCC-------------------------------------------------
Q 028725           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISGHA-------------------------------------------------  122 (205)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-------------------------------------------------  122 (205)
                            .....++++||+++++|.+++....                                                 
T Consensus        83 ------~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (337)
T cd05054          83 ------PGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDV  156 (337)
T ss_pred             ------CCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhc
Confidence                  2457889999999999999885321                                                 


Q ss_pred             ----------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcccccc---cc
Q 028725          123 ----------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK---VG  189 (205)
Q Consensus       123 ----------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~---~~  189 (205)
                                ...+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||++........   ..
T Consensus       157 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~---~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~  233 (337)
T cd05054         157 EEDEEGDELYKEPLTLEDLISYSFQVARGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKG  233 (337)
T ss_pred             ccchhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhcc
Confidence                      1257888899999999999999999   7999999999999999999999999999986643321   12


Q ss_pred             cccccccccCCCCC
Q 028725          190 HVTPYSGSINPTNS  203 (205)
Q Consensus       190 ~~~~~~~~~aPE~~  203 (205)
                      ...++..|+|||+.
T Consensus       234 ~~~~~~~y~aPE~~  247 (337)
T cd05054         234 DARLPLKWMAPESI  247 (337)
T ss_pred             CCCCCccccCcHHh
Confidence            23456789999964

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.96  E-value=3e-28  Score=186.05  Aligned_cols=170  Identities=23%  Similarity=0.377  Sum_probs=141.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEecC----CcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKN----GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~----~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .++|.+.+.||+|+||.||+|.+..    ...+++|.++... ......+.+|+..++.++||||+++.+.+..      
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~------   76 (266)
T cd05033           3 PSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTK------   76 (266)
T ss_pred             hHHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEec------
Confidence            4679999999999999999999642    3478999886543 2234568889999999999999999998755      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ....++++|++++++|.+++.... ..+++..++.++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|||
T Consensus        77 -~~~~~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~Lh~---~~i~H~di~p~nili~~~~~~~l~dfg  151 (266)
T cd05033          77 -SRPVMIITEYMENGSLDKFLREND-GKFTVGQLVGMLRGIASGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFG  151 (266)
T ss_pred             -CCceEEEEEcCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCCEEECccc
Confidence             567899999999999999987644 368899999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccc---cccccccccccCCCCC
Q 028725          178 LPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      ++........   .....++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~  180 (266)
T cd05033         152 LSRRLEDSEATYTTKGGKIPIRWTAPEAI  180 (266)
T ss_pred             hhhcccccccceeccCCCCCccccChhhh
Confidence            9987752221   1122445689999975

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.96  E-value=2.1e-29  Score=188.81  Aligned_cols=162  Identities=19%  Similarity=0.308  Sum_probs=141.6

Q ss_pred             eeeccCcceEEEEEE-ecCCcEEEEEEecccCCcCHHHHHHHHHHHhccC-CCcccccccceeeecccCCCCCeEEEEEe
Q 028725           30 AFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVSRIFLIFE  107 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~~~~~~~~lv~e  107 (205)
                      +.||+|+++.|..++ ..+|.++|+|++++........+.+|++++.+++ |+||+++++++.+       ...+|+|||
T Consensus        84 e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEd-------d~~FYLVfE  156 (463)
T KOG0607|consen   84 ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFED-------DTRFYLVFE  156 (463)
T ss_pred             HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcc-------cceEEEEEe
Confidence            679999999999999 7889999999999887777888999999999996 9999999999977       789999999


Q ss_pred             ecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC---CceeEcCCCchhhccc
Q 028725          108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN---LVAKISSYNLPLLAEN  184 (205)
Q Consensus       108 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~---~~~~l~Dfg~a~~~~~  184 (205)
                      .+.||+|-+.|..+.  .+++.....+...|+.||.+||.   +||.|||+||+||+..+.   ..+||+||.+..-...
T Consensus       157 Km~GGplLshI~~~~--~F~E~EAs~vvkdia~aLdFlH~---kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~  231 (463)
T KOG0607|consen  157 KMRGGPLLSHIQKRK--HFNEREASRVVKDIASALDFLHT---KGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKL  231 (463)
T ss_pred             cccCchHHHHHHHhh--hccHHHHHHHHHHHHHHHHHHhh---cCcccccCCccceeecCCCCcCceeeecccccccccc
Confidence            999999999998775  89999999999999999999999   899999999999999744   4689999998843332


Q ss_pred             cc--------ccccccccccccCCCCC
Q 028725          185 AE--------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 ~~--------~~~~~~~~~~~~aPE~~  203 (205)
                      ..        .....+|+.+|||||..
T Consensus       232 ~~~~spastP~L~tPvGSAEfMAPEVV  258 (463)
T KOG0607|consen  232 NNDCSPASTPELLTPVGSAEFMAPEVV  258 (463)
T ss_pred             CCCCCCCCCccccCcccchhhcchhHH
Confidence            11        22335899999999964

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.96  E-value=1.7e-28  Score=186.75  Aligned_cols=170  Identities=25%  Similarity=0.376  Sum_probs=143.5

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ..++|++.+.||+|+||.||+|...+++.+++|.+... ......+.+|+.+++.++|+|++++.+.+.        ...
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~--------~~~   74 (260)
T cd05067           4 PRETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQG-SMSPEAFLAEANLMKQLQHPRLVRLYAVVT--------QEP   74 (260)
T ss_pred             chHHceeeeeeccCccceEEeeecCCCceEEEEEecCC-CCcHHHHHHHHHHHHhcCCcCeeeEEEEEc--------cCC
Confidence            45789999999999999999999878899999998744 344567889999999999999999987653        345


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++|++.+++|.+++....+..+++.....++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        75 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~---~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~  151 (260)
T cd05067          75 IYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIER---KNYIHRDLRAANILVSETLCCKIADFGLARL  151 (260)
T ss_pred             cEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhc---CCeecccccHHhEEEcCCCCEEEccCcceee
Confidence            8999999999999999876555578899999999999999999999   7999999999999999999999999999976


Q ss_pred             ccccccc--ccccccccccCCCCC
Q 028725          182 AENAEKV--GHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~~--~~~~~~~~~~aPE~~  203 (205)
                      .......  ....++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~y~~pe~~  175 (260)
T cd05067         152 IEDNEYTAREGAKFPIKWTAPEAI  175 (260)
T ss_pred             cCCCCcccccCCcccccccCHHHh
Confidence            6532211  123456789999964

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.96  E-value=2e-28  Score=188.59  Aligned_cols=167  Identities=16%  Similarity=0.325  Sum_probs=142.3

Q ss_pred             CCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEE
Q 028725           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      |++.+.||+|+||.||++... ++..+++|.+..........+.+|+.+++.++|||++++.+.+..       .+..++
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~-------~~~~~~   79 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYY-------ENNLWI   79 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEee-------CCEEEE
Confidence            678899999999999999954 578889999876555556778889999999999999999998866       568999


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ++||+++++|..++.... ..+++..+..++.|++.+|.|||+   .+++|+||+|+||+++.++.++|+|||++.....
T Consensus        80 v~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~qi~~~L~~LH~---~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~  155 (282)
T cd06643          80 LIEFCAGGAVDAVMLELE-RPLTEPQIRVVCKQTLEALNYLHE---NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTR  155 (282)
T ss_pred             EEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCcccEEEccCCCEEEccccccccccc
Confidence            999999999998876432 368999999999999999999999   7999999999999999999999999999865543


Q ss_pred             c-cccccccccccccCCCCC
Q 028725          185 A-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 ~-~~~~~~~~~~~~~aPE~~  203 (205)
                      . .......++..|+|||..
T Consensus       156 ~~~~~~~~~~~~~y~aPE~~  175 (282)
T cd06643         156 TIQRRDSFIGTPYWMAPEVV  175 (282)
T ss_pred             cccccccccccccccCHhhc
Confidence            2 223345788999999964

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.96  E-value=2.2e-28  Score=185.87  Aligned_cols=168  Identities=20%  Similarity=0.326  Sum_probs=139.9

Q ss_pred             cCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEE
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (205)
                      .+|++.+.||+|++|.||++.+.++..+++|.+... ......+.+|+.+++.++||||+++.+.+..       .+..+
T Consensus         4 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~~~   75 (256)
T cd05059           4 SELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREG-AMSEDDFIEEAKVMMKLSHPNLVQLYGVCTK-------QRPIF   75 (256)
T ss_pred             HHcchhhhhccCCCceEEEeEecCCccEEEEEeccC-CCCHHHHHHHHHHHHhCCCCCEEEEEEEEcC-------CCceE
Confidence            568899999999999999999877778999998633 3344568889999999999999999887754       56789


Q ss_pred             EEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcc
Q 028725          104 LIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  183 (205)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~  183 (205)
                      +++|++++++|.+++.... ..+++..++.++.|++.++.|||+   .+++|+||+|+||++++++.++|+|||+++...
T Consensus        76 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~  151 (256)
T cd05059          76 IVTEYMANGCLLNYLRERK-GKLGTEWLLDMCSDVCEAMEYLES---NGFIHRDLAARNCLVGEDNVVKVSDFGLARYVL  151 (256)
T ss_pred             EEEecCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHH---CCcccccccHhhEEECCCCcEEECCcccceecc
Confidence            9999999999999987544 368899999999999999999999   799999999999999999999999999987654


Q ss_pred             ccccc--ccccccccccCCCCC
Q 028725          184 NAEKV--GHVTPYSGSINPTNS  203 (205)
Q Consensus       184 ~~~~~--~~~~~~~~~~aPE~~  203 (205)
                      +....  ....++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~y~~Pe~~  173 (256)
T cd05059         152 DDQYTSSQGTKFPVKWAPPEVF  173 (256)
T ss_pred             cccccccCCCCCCccccCHHHh
Confidence            33211  111334579999964

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.96  E-value=4.7e-28  Score=184.79  Aligned_cols=167  Identities=19%  Similarity=0.387  Sum_probs=141.7

Q ss_pred             CCCcceeeccCcceEEEEEEecCCcEEEEEEecccCC------cCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS------HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      +|.+.+.||+|+||.||+|...++..+++|.++....      .....+.+|+..++.++|+||+++.+.+.+       
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------   73 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLD-------   73 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeec-------
Confidence            5889999999999999999977889999998865421      123557889999999999999999998865       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....++++||+++++|.+++....  .+++..+..++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||+
T Consensus        74 ~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~  148 (265)
T cd06631          74 DNTISIFMEFVPGGSISSILNRFG--PLPEPVFCKYTKQILDGVAYLHN---NCVVHRDIKGNNVMLMPNGIIKLIDFGC  148 (265)
T ss_pred             CCeEEEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcCHHhEEECCCCeEEeccchh
Confidence            578999999999999999997653  67889999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccc-------cccccccccccccCCCCC
Q 028725          179 PLLAENA-------EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~-------~~~~~~~~~~~~~aPE~~  203 (205)
                      +......       .......++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  180 (265)
T cd06631         149 ARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVI  180 (265)
T ss_pred             hHhhhhccccccccccccccCCCccccChhhh
Confidence            8755321       122234688899999974

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=8.8e-30  Score=215.50  Aligned_cols=176  Identities=18%  Similarity=0.247  Sum_probs=155.3

Q ss_pred             CHHHHHHHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCccccccccee
Q 028725           15 SLEELEEATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCF   90 (205)
Q Consensus        15 ~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~   90 (205)
                      .+.++.....+|.+.+.||+|+||.|..+++ .+++.||+|++++.   +..+...|..|-.++.....+.|+.+.-.|.
T Consensus        66 ~v~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQ  145 (1317)
T KOG0612|consen   66 KVKELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQ  145 (1317)
T ss_pred             HHHHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhc
Confidence            3456667778999999999999999999995 46899999999873   5667888999999999989999999988887


Q ss_pred             eecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc
Q 028725           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  170 (205)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~  170 (205)
                      +       ..++|+||||++||+|-.++.+..  .+++.-...++..|..||.-+|+   +|++||||||+|||+|.+|.
T Consensus       146 D-------~~~LYlVMdY~pGGDlltLlSk~~--~~pE~~ArFY~aEiVlAldslH~---mgyVHRDiKPDNvLld~~GH  213 (1317)
T KOG0612|consen  146 D-------ERYLYLVMDYMPGGDLLTLLSKFD--RLPEDWARFYTAEIVLALDSLHS---MGYVHRDIKPDNVLLDKSGH  213 (1317)
T ss_pred             C-------ccceEEEEecccCchHHHHHhhcC--CChHHHHHHHHHHHHHHHHHHHh---ccceeccCCcceeEecccCc
Confidence            6       779999999999999999998775  78888889999999999999999   89999999999999999999


Q ss_pred             eeEcCCCchhhccccccc--ccccccccccCCCC
Q 028725          171 AKISSYNLPLLAENAEKV--GHVTPYSGSINPTN  202 (205)
Q Consensus       171 ~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~aPE~  202 (205)
                      ++|+|||.+-.++.++..  ...+||+.|++||.
T Consensus       214 ikLADFGsClkm~~dG~V~s~~aVGTPDYISPEv  247 (1317)
T KOG0612|consen  214 IKLADFGSCLKMDADGTVRSSVAVGTPDYISPEV  247 (1317)
T ss_pred             EeeccchhHHhcCCCCcEEeccccCCCCccCHHH
Confidence            999999998777765533  33599999999995

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.96  E-value=6.1e-29  Score=200.76  Aligned_cols=166  Identities=20%  Similarity=0.303  Sum_probs=144.4

Q ss_pred             cCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccCCcCHHHHHHHHHHHhccC------CCcccccccceeeecccC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR------HCHLVSALGHCFECYFDD   96 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~------~~~i~~~~~~~~~~~~~~   96 (205)
                      .+|.+++.||+|+||+|-+|. ..+++.||||+++.. .....+-..|+.+|..++      .-|++++.+.+..     
T Consensus       186 ~rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~-k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~f-----  259 (586)
T KOG0667|consen  186 YRYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNK-KRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYF-----  259 (586)
T ss_pred             EEEEEEEEecccccceeEEEEecCCCcEEEEEeeccC-hHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccc-----
Confidence            378999999999999999999 667999999999844 445555667899998886      3589999999987     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC--CceeEc
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN--LVAKIS  174 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~--~~~~l~  174 (205)
                        .+.+++|+|.+ ..+|-++++.+....++...+..++.||+.+|.+||+   .+|||.||||+|||+.+.  ..+||+
T Consensus       260 --r~HlciVfELL-~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~---l~IIHcDLKPENILL~~~~r~~vKVI  333 (586)
T KOG0667|consen  260 --RNHLCIVFELL-STNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHE---LGIIHCDLKPENILLKDPKRSRIKVI  333 (586)
T ss_pred             --ccceeeeehhh-hhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCChhheeeccCCcCceeEE
Confidence              78999999999 4599999998887889999999999999999999999   799999999999999744  479999


Q ss_pred             CCCchhhcccccccccccccccccCCCCC
Q 028725          175 SYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       175 Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |||.|+...+  .......+..|.|||..
T Consensus       334 DFGSSc~~~q--~vytYiQSRfYRAPEVI  360 (586)
T KOG0667|consen  334 DFGSSCFESQ--RVYTYIQSRFYRAPEVI  360 (586)
T ss_pred             ecccccccCC--cceeeeeccccccchhh
Confidence            9999987775  33367999999999963

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.96  E-value=6.6e-30  Score=203.85  Aligned_cols=164  Identities=21%  Similarity=0.364  Sum_probs=142.7

Q ss_pred             HHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           19 LEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        19 ~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      |+.....-.-++-||.|+.|.||+|..+ ++.||||.++..+       ..+++.|+.++|+||+.|.|+|.+       
T Consensus       119 WeiPFe~IsELeWlGSGaQGAVF~Grl~-netVAVKKV~elk-------ETdIKHLRkLkH~NII~FkGVCtq-------  183 (904)
T KOG4721|consen  119 WEIPFEEISELEWLGSGAQGAVFLGRLH-NETVAVKKVRELK-------ETDIKHLRKLKHPNIITFKGVCTQ-------  183 (904)
T ss_pred             ccCCHHHhhhhhhhccCcccceeeeecc-CceehhHHHhhhh-------hhhHHHHHhccCcceeeEeeeecC-------
Confidence            3334444445667899999999999986 7889999886322       236788999999999999999977       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....+||||||+.|.|...++...  ..+...+..|..+|+.||.|||.   +.|||||||.-||||+.+..+||+|||.
T Consensus       184 sPcyCIiMEfCa~GqL~~VLka~~--~itp~llv~Wsk~IA~GM~YLH~---hKIIHRDLKSPNiLIs~~d~VKIsDFGT  258 (904)
T KOG4721|consen  184 SPCYCIIMEFCAQGQLYEVLKAGR--PITPSLLVDWSKGIAGGMNYLHL---HKIIHRDLKSPNILISYDDVVKISDFGT  258 (904)
T ss_pred             CceeEEeeeccccccHHHHHhccC--ccCHHHHHHHHHHhhhhhHHHHH---hhHhhhccCCCceEeeccceEEeccccc
Confidence            678999999999999999998765  78889999999999999999999   6999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      ++..++-......+||..|||||.
T Consensus       259 S~e~~~~STkMSFaGTVaWMAPEv  282 (904)
T KOG4721|consen  259 SKELSDKSTKMSFAGTVAWMAPEV  282 (904)
T ss_pred             hHhhhhhhhhhhhhhhHhhhCHHH
Confidence            998887766677899999999995

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.96  E-value=4e-28  Score=185.39  Aligned_cols=170  Identities=18%  Similarity=0.303  Sum_probs=141.3

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCC-----cCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS-----HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~-----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .+|...+.||+|+||.||+|.. .++..+++|.+.....     .....+.+|+.+++.++||||+++.+.+..     .
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~   76 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRD-----R   76 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEc-----C
Confidence            5899999999999999999995 4588999998865421     234567889999999999999999887654     2


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      .....++++|++++++|.+.+....  .+++...+.++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||
T Consensus        77 ~~~~~~l~~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~LH~---~~i~H~~l~p~nil~~~~~~~~l~dfg  151 (266)
T cd06651          77 AEKTLTIFMEYMPGGSVKDQLKAYG--ALTESVTRKYTRQILEGMSYLHS---NMIVHRDIKGANILRDSAGNVKLGDFG  151 (266)
T ss_pred             CCCEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEccCC
Confidence            2457899999999999999987653  57888899999999999999999   799999999999999999999999999


Q ss_pred             chhhcccc----cccccccccccccCCCCC
Q 028725          178 LPLLAENA----EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~----~~~~~~~~~~~~~aPE~~  203 (205)
                      ++......    .......++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  181 (266)
T cd06651         152 ASKRLQTICMSGTGIRSVTGTPYWMSPEVI  181 (266)
T ss_pred             CccccccccccCCccccCCccccccCHHHh
Confidence            98755432    122234688899999974

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.96  E-value=2e-28  Score=188.47  Aligned_cols=171  Identities=25%  Similarity=0.411  Sum_probs=140.0

Q ss_pred             hcCCCcceeeccCcceEEEEEEecC-C-----cEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKN-G-----TFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~-~-----~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      .++|++.+.||+|+||.||+|...+ +     ..+++|.++.... .....+.+|+..+..++||||+++.+.+..    
T Consensus         4 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~----   79 (283)
T cd05048           4 LSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTK----   79 (283)
T ss_pred             hHHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcC----
Confidence            3578999999999999999998542 2     5789998864432 234568899999999999999999998765    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCC--------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccc
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAW--------------QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT  161 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~--------------~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~  161 (205)
                         ....++++||+++++|.+++.....              ..+++..++.++.|++.||.|||+   .+++|+||||+
T Consensus        80 ---~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~---~~i~H~dlkp~  153 (283)
T cd05048          80 ---EQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSS---HHFVHRDLAAR  153 (283)
T ss_pred             ---CCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccccc
Confidence               5678999999999999999874321              357888899999999999999999   79999999999


Q ss_pred             cEEeCCCCceeEcCCCchhhccccc---ccccccccccccCCCCC
Q 028725          162 DILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       162 nilv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      ||++++++.++|+|||++.......   ......++..|+|||..
T Consensus       154 Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  198 (283)
T cd05048         154 NCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAI  198 (283)
T ss_pred             eEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCHHHh
Confidence            9999999999999999997543322   22234567889999964

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.96  E-value=1.8e-28  Score=189.08  Aligned_cols=184  Identities=14%  Similarity=0.240  Sum_probs=149.1

Q ss_pred             cCHHHHHHHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhcc-CCCcccccccceee
Q 028725           14 FSLEELEEATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFE   91 (205)
Q Consensus        14 ~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~   91 (205)
                      +.++.+....++|++.+.||+|+||.||++.. .+++.+++|+++... .....+.+|..+++.+ +|||++++.+.+..
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   86 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH-DIDEEIEAEYNILKALSDHPNVVKFYGMYYK   86 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc-chHHHHHHHHHHHHHHhcCCCeeeeeeeeee
Confidence            44567777889999999999999999999995 458899999886432 2335677899999998 69999999998754


Q ss_pred             ecccCCCCCeEEEEEeecCCCcHHHhhcc--CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC
Q 028725           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISG--HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL  169 (205)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~  169 (205)
                      ..  ...++..+++|||+++++|.+++..  .....+++..+..++.|++.||.|||+   .+++||||+|+||++++++
T Consensus        87 ~~--~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nili~~~~  161 (286)
T cd06638          87 KD--VKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHV---NKTIHRDVKGNNILLTTEG  161 (286)
T ss_pred             cc--cCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHh---CCccccCCCHHhEEECCCC
Confidence            21  1234678999999999999998752  122467888999999999999999999   7999999999999999999


Q ss_pred             ceeEcCCCchhhccccc-ccccccccccccCCCCC
Q 028725          170 VAKISSYNLPLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       170 ~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      .++|+|||++....... ......++..|+|||..
T Consensus       162 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  196 (286)
T cd06638         162 GVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVI  196 (286)
T ss_pred             CEEEccCCceeecccCCCccccccCCCcccChhhh
Confidence            99999999987655432 33345789999999964

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.96  E-value=5e-28  Score=184.74  Aligned_cols=170  Identities=14%  Similarity=0.268  Sum_probs=142.3

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|++.+.||+|+||.||+|.. .+++.+++|.++...   ......+.+|+.+++.++|||++++.+.+..       .
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~   74 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIE-------D   74 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEE-------C
Confidence            6899999999999999999995 468999999886432   2234567889999999999999999998765       5


Q ss_pred             CeEEEEEeecCCCcHHHhhccC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725          100 SRIFLIFEYVPNGTLRSWISGH--AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      ...++++|++++++|.+++...  ....+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||
T Consensus        75 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~~~nil~~~~~~~~l~d~g  151 (267)
T cd08228          75 NELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHS---RRVMHRDIKPANVFITATGVVKLGDLG  151 (267)
T ss_pred             CeEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCCHHHEEEcCCCCEEECccc
Confidence            6789999999999999988632  22357888999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccc-cccccccccccCCCCC
Q 028725          178 LPLLAENAEK-VGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~-~~~~~~~~~~~aPE~~  203 (205)
                      ++........ .....++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~aPE~~  178 (267)
T cd08228         152 LGRFFSSKTTAAHSLVGTPYYMSPERI  178 (267)
T ss_pred             cceeccchhHHHhcCCCCccccChhhh
Confidence            9876654332 2234688899999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.96  E-value=4.3e-28  Score=186.51  Aligned_cols=163  Identities=15%  Similarity=0.307  Sum_probs=138.5

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ++|++.+.||+|++|.||+|.. .+++.+++|.+.... ......+.+|+.++++++||||+++.+.+..       .+.
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~~   73 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFV-------ENR   73 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEE-------CCE
Confidence            3688899999999999999994 568899999986542 2334568889999999999999999998876       567


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++||+++++|..+.      .+++..+..++.|++.||.|||+   .+++|+||||+||++++++.++|+|||++..
T Consensus        74 ~~lv~e~~~~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~  144 (279)
T cd06619          74 ISICTEFMDGGSLDVYR------KIPEHVLGRIAVAVVKGLTYLWS---LKILHRDVKPSNMLVNTRGQVKLCDFGVSTQ  144 (279)
T ss_pred             EEEEEecCCCCChHHhh------cCCHHHHHHHHHHHHHHHHHHHH---CCEeeCCCCHHHEEECCCCCEEEeeCCccee
Confidence            89999999999986542      46778888999999999999999   7999999999999999999999999999976


Q ss_pred             cccccccccccccccccCCCCC
Q 028725          182 AENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ..... .....++..|+|||..
T Consensus       145 ~~~~~-~~~~~~~~~y~aPE~~  165 (279)
T cd06619         145 LVNSI-AKTYVGTNAYMAPERI  165 (279)
T ss_pred             ccccc-ccCCCCChhhcCceee
Confidence            55432 2335789999999964

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.96  E-value=3.6e-28  Score=184.41  Aligned_cols=167  Identities=22%  Similarity=0.368  Sum_probs=143.9

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-----CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-----SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      +|+..+.||+|++|.||+|... ++..+++|.+....     ....+.+.+|+.+++.++|+|++++.+.+..       
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-------   73 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTERE-------   73 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEec-------
Confidence            5788899999999999999965 78999999986543     2245678899999999999999999998765       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....++++||+++++|.+++....  .+++..++.++.|++.++.|||+   .+++|+||+|+||++++++.++|+|||+
T Consensus        74 ~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~~~ni~~~~~~~~kl~d~~~  148 (258)
T cd06632          74 EDNLYIFLELVPGGSLAKLLKKYG--SFPEPVIRLYTRQILLGLEYLHD---RNTVHRDIKGANILVDTNGVVKLADFGM  148 (258)
T ss_pred             CCeEEEEEEecCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEccCcc
Confidence            568999999999999999987653  57889999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +.............++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~~~y~~pe~~  173 (258)
T cd06632         149 AKQVVEFSFAKSFKGSPYWMAPEVI  173 (258)
T ss_pred             ceeccccccccccCCCcceeCHHHh
Confidence            9776654434456788899999964

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.96  E-value=2.8e-28  Score=188.00  Aligned_cols=170  Identities=15%  Similarity=0.307  Sum_probs=143.4

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc-CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ++|++.+.||+|+||.||++... ++..+++|.++.. .......+.+|+.++++++|+||+++.+.+..       .+.
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-------~~~   73 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFI-------EGA   73 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheec-------CCe
Confidence            36889999999999999999965 6899999988654 23335678899999999999999999998765       678


Q ss_pred             EEEEEeecCCCcHHHhhccC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          102 IFLIFEYVPNGTLRSWISGH-AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      .++++||+++++|.+++... ....+++..+..++.+++.+|.|||+.  .+++|+||+|+||++++++.++|+|||++.
T Consensus        74 ~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  151 (286)
T cd06622          74 VYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEE--HNIIHRDVKPTNVLVNGNGQVKLCDFGVSG  151 (286)
T ss_pred             EEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhc--CCEeeCCCCHHHEEECCCCCEEEeecCCcc
Confidence            99999999999999988653 123689999999999999999999963  599999999999999999999999999997


Q ss_pred             hcccccccccccccccccCCCCC
Q 028725          181 LAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ...... .....++..|+|||..
T Consensus       152 ~~~~~~-~~~~~~~~~y~aPE~~  173 (286)
T cd06622         152 NLVASL-AKTNIGCQSYMAPERI  173 (286)
T ss_pred             cccCCc-cccCCCccCccCcchh
Confidence            654332 2334688899999975

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.96  E-value=2.1e-28  Score=186.05  Aligned_cols=167  Identities=19%  Similarity=0.328  Sum_probs=145.6

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      +|++.+.||.|+||.||+|... ++..+++|++....   ....+.+.+|+.++++++||||+++.+.+..       ..
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~   73 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQD-------EE   73 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcC-------CC
Confidence            5889999999999999999964 68999999997543   2346778899999999999999999988755       67


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++++||+.+++|.+.+...  ..+++..+..++.|++++|.|||+   .+++|+||+|+||++++++.++|+|||.+.
T Consensus        74 ~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lh~---~~i~h~dl~~~nil~~~~~~~~l~d~~~~~  148 (258)
T cd05578          74 NMYLVVDLLLGGDLRYHLSQK--VKFSEEQVKFWICEIVLALEYLHS---KGIIHRDIKPDNILLDEQGHVHITDFNIAT  148 (258)
T ss_pred             eEEEEEeCCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeEEcCCCCEEEeeccccc
Confidence            899999999999999998765  368899999999999999999999   799999999999999999999999999998


Q ss_pred             hcccccccccccccccccCCCCC
Q 028725          181 LAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ............++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~y~~PE~~  171 (258)
T cd05578         149 KVTPDTLTTSTSGTPGYMAPEVL  171 (258)
T ss_pred             ccCCCccccccCCChhhcCHHHH
Confidence            76655444456788899999964

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=3.5e-28  Score=185.05  Aligned_cols=172  Identities=24%  Similarity=0.415  Sum_probs=144.6

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ...++|.+.+.||+|++|.||+|...++..+++|.+... ......+.+|+.+++.++|+|++++.+.+..       ..
T Consensus         3 ~~~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~   74 (261)
T cd05034           3 IPRESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPG-TMSPEAFLQEAQIMKKLRHDKLVQLYAVCSE-------EE   74 (261)
T ss_pred             cchhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCC-ccCHHHHHHHHHHHhhCCCCCEeeeeeeeec-------CC
Confidence            345789999999999999999999777788999998743 3445678899999999999999999987754       46


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++++|++++++|.+++.......+++..+..++.+++.|+.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        75 ~~~~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~---~~i~h~di~p~nili~~~~~~~l~d~g~~~  151 (261)
T cd05034          75 PIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLES---RNYIHRDLAARNILVGENLVCKIADFGLAR  151 (261)
T ss_pred             ceEEEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcchheEEEcCCCCEEECccccce
Confidence            78999999999999999987654578999999999999999999999   699999999999999999999999999987


Q ss_pred             hccccccc--ccccccccccCCCCC
Q 028725          181 LAENAEKV--GHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~--~~~~~~~~~~aPE~~  203 (205)
                      ........  .....+..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~y~~PE~~  176 (261)
T cd05034         152 LIEDDEYTAREGAKFPIKWTAPEAA  176 (261)
T ss_pred             eccchhhhhhhccCCCccccCHHHh
Confidence            66542211  112344679999953

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.96  E-value=2.3e-28  Score=186.04  Aligned_cols=170  Identities=22%  Similarity=0.381  Sum_probs=141.8

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ...+|++.+.||+|++|.||+|...++..+++|.++.... ....+.+|+.+++.++|++++++.+.+.        ...
T Consensus         4 ~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~--------~~~   74 (260)
T cd05070           4 PRESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLYAVVS--------EEP   74 (260)
T ss_pred             chHHhhhhheeccccCceEEEEEecCCceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEEeEEC--------CCC
Confidence            3467999999999999999999977788899999875432 4567889999999999999999987653        245


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .+++||++++++|.+++.......+++..++.++.+++.+|.|||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        75 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~di~p~Nili~~~~~~~l~dfg~~~~  151 (260)
T cd05070          75 IYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIER---MNYIHRDLRSANILVGDGLVCKIADFGLARL  151 (260)
T ss_pred             cEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCccceEEEeCCceEEeCCceeeee
Confidence            7899999999999999876544568899999999999999999999   7999999999999999999999999999976


Q ss_pred             ccccccc--ccccccccccCCCCC
Q 028725          182 AENAEKV--GHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~~--~~~~~~~~~~aPE~~  203 (205)
                      .......  ....++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~y~aPE~~  175 (260)
T cd05070         152 IEDNEYTARQGAKFPIKWTAPEAA  175 (260)
T ss_pred             ccCcccccccCCCCCccccChHHH
Confidence            5543221  112345679999963

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.96  E-value=5.7e-28  Score=187.45  Aligned_cols=168  Identities=15%  Similarity=0.317  Sum_probs=145.6

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      .+|++.+.||.|++|.||+|.. .+++.+++|.+........+.+.+|+..++.++|||++++.+.+..       ....
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-------~~~~   91 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLV-------GDEL   91 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEec-------CceE
Confidence            4699999999999999999984 5688999999976655566778899999999999999999998865       5689


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      ++++||+++++|.+++...   .+++..+..++.+++.++.|||+   .+++|+||+|+||+++.++.++|+|||++...
T Consensus        92 ~lv~e~~~~~~L~~~~~~~---~l~~~~~~~i~~~l~~al~~LH~---~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~  165 (296)
T cd06655          92 FVVMEYLAGGSLTDVVTET---CMDEAQIAAVCRECLQALEFLHA---NQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQI  165 (296)
T ss_pred             EEEEEecCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEccCccchhc
Confidence            9999999999999988653   57899999999999999999999   79999999999999999999999999998765


Q ss_pred             ccccc-cccccccccccCCCCCC
Q 028725          183 ENAEK-VGHVTPYSGSINPTNSA  204 (205)
Q Consensus       183 ~~~~~-~~~~~~~~~~~aPE~~~  204 (205)
                      ..... .....++..|+|||...
T Consensus       166 ~~~~~~~~~~~~~~~y~aPE~~~  188 (296)
T cd06655         166 TPEQSKRSTMVGTPYWMAPEVVT  188 (296)
T ss_pred             ccccccCCCcCCCccccCcchhc
Confidence            54332 23347888999999753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=2.5e-28  Score=199.05  Aligned_cols=163  Identities=13%  Similarity=0.186  Sum_probs=137.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ...|.+.+.||+|+||.||+|... +++.|++|...      ...+.+|+++++.++|+||+++++++..       ...
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~------~~~~~~E~~iL~~L~HpnIv~l~~~~~~-------~~~  234 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW------YASSVHEARLLRRLSHPAVLALLDVRVV-------GGL  234 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc------ccCHHHHHHHHHHCCCCCCCcEEEEEEE-------CCE
Confidence            346999999999999999999965 47889999542      2335689999999999999999998766       567


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++|++. ++|.+++.... ..+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||+++.
T Consensus       235 ~~lv~e~~~-~~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~yLH~---~gIvHrDLKP~NILl~~~~~vkL~DFGla~~  309 (461)
T PHA03211        235 TCLVLPKYR-SDLYTYLGARL-RPLGLAQVTAVARQLLSAIDYIHG---EGIIHRDIKTENVLVNGPEDICLGDFGAACF  309 (461)
T ss_pred             EEEEEEccC-CCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCEEECcCCHHHEEECCCCCEEEcccCCcee
Confidence            899999995 58888876543 368999999999999999999999   7999999999999999999999999999976


Q ss_pred             cccccc---cccccccccccCCCCC
Q 028725          182 AENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      ......   .....||..|+|||+.
T Consensus       310 ~~~~~~~~~~~~~~GT~~Y~APE~~  334 (461)
T PHA03211        310 ARGSWSTPFHYGIAGTVDTNAPEVL  334 (461)
T ss_pred             cccccccccccccCCCcCCcCHHHH
Confidence            544321   1234699999999975

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.96  E-value=7e-28  Score=182.69  Aligned_cols=169  Identities=18%  Similarity=0.334  Sum_probs=144.9

Q ss_pred             CCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +|+..+.||+|++|.||++.. .+++.+++|.+....  ......+.+|+.+++.++|||++++.+.+..       .+.
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-------~~~   73 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLE-------DKA   73 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEec-------CCE
Confidence            588999999999999999995 468899999987553  3345678899999999999999999987754       568


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC-CceeEcCCCchh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN-LVAKISSYNLPL  180 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~-~~~~l~Dfg~a~  180 (205)
                      .++++|++++++|.+++.......+++..+..++.+++.+|.|||+   .+++|+||+|+||+++++ +.++|+|||.+.
T Consensus        74 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~---~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~  150 (256)
T cd08220          74 LMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHT---KLILHRDLKTQNILLDKHKMVVKIGDFGISK  150 (256)
T ss_pred             EEEEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEEccCCCce
Confidence            9999999999999999986544568999999999999999999999   799999999999999855 568999999998


Q ss_pred             hcccccccccccccccccCCCCC
Q 028725          181 LAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ............++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~y~aPE~~  173 (256)
T cd08220         151 ILSSKSKAYTVVGTPCYISPELC  173 (256)
T ss_pred             ecCCCccccccccCCcccCchhc
Confidence            77665554556788999999974

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=4.8e-29  Score=197.17  Aligned_cols=169  Identities=16%  Similarity=0.234  Sum_probs=152.1

Q ss_pred             hcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccCCc--CHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSH--STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ..-|.+.+.||+|-|+.|.+|+ .-+|.+||+|++++.+..  ....+++|++.++.++||||++++++.-.       .
T Consensus        17 AGLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDT-------Q   89 (864)
T KOG4717|consen   17 AGLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDT-------Q   89 (864)
T ss_pred             eeeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcc-------c
Confidence            4568999999999999999999 458999999999877543  34678899999999999999999998743       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC-CCCceeEcCCCc
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD-QNLVAKISSYNL  178 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~-~~~~~~l~Dfg~  178 (205)
                      ..+|+|+|.-.+|+|.++|.++. ..+.+.....++.||+.|+.|+|+   ..++||||||+|+.+. +-|.+||.|||+
T Consensus        90 TKlyLiLELGD~GDl~DyImKHe-~Gl~E~La~kYF~QI~~AI~YCHq---LHVVHRDLKPENVVFFEKlGlVKLTDFGF  165 (864)
T KOG4717|consen   90 TKLYLILELGDGGDLFDYIMKHE-EGLNEDLAKKYFAQIVHAISYCHQ---LHVVHRDLKPENVVFFEKLGLVKLTDFGF  165 (864)
T ss_pred             ceEEEEEEecCCchHHHHHHhhh-ccccHHHHHHHHHHHHHHHHHHhh---hhhhcccCCcceeEEeeecCceEeeeccc
Confidence            79999999999999999998766 578899999999999999999999   8999999999999887 568999999999


Q ss_pred             hhhcccccccccccccccccCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      +..+..+.+....+|+.-|-|||-
T Consensus       166 SNkf~PG~kL~TsCGSLAYSAPEI  189 (864)
T KOG4717|consen  166 SNKFQPGKKLTTSCGSLAYSAPEI  189 (864)
T ss_pred             cccCCCcchhhcccchhhccCchh
Confidence            999999898888999999999995

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.96  E-value=1.6e-28  Score=191.34  Aligned_cols=176  Identities=20%  Similarity=0.380  Sum_probs=141.4

Q ss_pred             HHHHHhcCCCcceeeccCcceEEEEEEec--------CCcEEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCccccccc
Q 028725           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLK--------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALG   87 (205)
Q Consensus        18 ~~~~~~~~y~~~~~lg~g~~g~V~~~~~~--------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~i~~~~~   87 (205)
                      .+....++|.+.+.||+|+||.||++...        ++..+|+|.++... ......+.+|+.+++.+ +||||+++.+
T Consensus        12 ~~~~~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~   91 (307)
T cd05098          12 RWEVPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLG   91 (307)
T ss_pred             cceeehHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEE
Confidence            34444578999999999999999999853        13469999997542 33455678899999999 7999999999


Q ss_pred             ceeeecccCCCCCeEEEEEeecCCCcHHHhhccCC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCce
Q 028725           88 HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA--------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGV  153 (205)
Q Consensus        88 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i  153 (205)
                      .+..       .+..++++||+++++|.+++....              ...+++..++.++.|++.||.|||+   .++
T Consensus        92 ~~~~-------~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~---~gi  161 (307)
T cd05098          92 ACTQ-------DGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLAS---KKC  161 (307)
T ss_pred             EEec-------CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHH---CCc
Confidence            8865       567899999999999999997532              1247888999999999999999999   799


Q ss_pred             eecCCccccEEeCCCCceeEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          154 FSNNLKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       154 ~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      +|+||||+||+++.++.++|+|||+++.......   .....++..|+|||..
T Consensus       162 ~H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~  214 (307)
T cd05098         162 IHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEAL  214 (307)
T ss_pred             ccccccHHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHh
Confidence            9999999999999999999999999876543221   1112344689999964

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.96  E-value=3.7e-28  Score=185.73  Aligned_cols=173  Identities=21%  Similarity=0.280  Sum_probs=143.5

Q ss_pred             HHHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           20 EEATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        20 ~~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      +...++......||+|+||.||+|.. .++..+++|.+..........+.+|+.+++.++|+||+++++.+..       
T Consensus         4 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-------   76 (268)
T cd06624           4 EYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSE-------   76 (268)
T ss_pred             ccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeecc-------
Confidence            34456666778899999999999994 4578899999876655566788899999999999999999998865       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCC--CHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC-CCceeEcC
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSL--TWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-NLVAKISS  175 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~--~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~-~~~~~l~D  175 (205)
                      ++..++++|++++++|.+++.... ..+  ++..+..++.|++.||.|||+   .+++|+||+|+||+++. ++.++|+|
T Consensus        77 ~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~h~dl~p~nil~~~~~~~~~l~d  152 (268)
T cd06624          77 NGFFKIFMEQVPGGSLSALLRSKW-GPLKDNEQTIIFYTKQILEGLKYLHD---NQIVHRDIKGDNVLVNTYSGVVKISD  152 (268)
T ss_pred             CCEEEEEEecCCCCCHHHHHHHhc-ccCCCcHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCeEEEec
Confidence            578999999999999999987542 234  778888899999999999999   79999999999999986 67999999


Q ss_pred             CCchhhcccccc-cccccccccccCCCCC
Q 028725          176 YNLPLLAENAEK-VGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~~-~~~~~~~~~~~aPE~~  203 (205)
                      ||++........ .....++..|+|||..
T Consensus       153 fg~~~~~~~~~~~~~~~~~~~~~~aPE~~  181 (268)
T cd06624         153 FGTSKRLAGINPCTETFTGTLQYMAPEVI  181 (268)
T ss_pred             chhheecccCCCccccCCCCccccChhhh
Confidence            999876543222 2234678899999964

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.96  E-value=4.8e-28  Score=186.50  Aligned_cols=167  Identities=19%  Similarity=0.325  Sum_probs=144.1

Q ss_pred             CCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +|++.+.||+|++|.||+|.. .++..+++|++....  ......+.+|+.+++.++|||++++.+.+..       ...
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-------~~~   73 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPH-------GSG   73 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEec-------CCe
Confidence            588999999999999999995 468899999997654  3335678899999999999999999998865       668


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++|+|++ +++|.+++.... ..+++..++.++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        74 ~~~v~e~~-~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~  148 (286)
T cd07832          74 FVLVMEYM-PSDLSEVLRDEE-RPLPEAQVKSYMRMLLKGVAYMHA---NGIMHRDLKPANLLISADGVLKIADFGLARL  148 (286)
T ss_pred             eEEEeccc-CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCcCHHHEEEcCCCcEEEeeeeeccc
Confidence            99999999 999999987543 468999999999999999999999   7999999999999999999999999999987


Q ss_pred             cccccc--cccccccccccCCCCC
Q 028725          182 AENAEK--VGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~--~~~~~~~~~~~aPE~~  203 (205)
                      ......  .....++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~~y~aPE~~  172 (286)
T cd07832         149 FSEEEPRLYSHQVATRWYRAPELL  172 (286)
T ss_pred             ccCCCCCccccccCcccccCceee
Confidence            665432  3345788999999974

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.96  E-value=6.3e-28  Score=185.84  Aligned_cols=168  Identities=23%  Similarity=0.373  Sum_probs=140.0

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +|++.+.||+|++|.||+|... ++..|++|.++...  ......+.+|+.+++.++|||++++.+.+..       +..
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~   73 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQ-------ESR   73 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEee-------CCe
Confidence            5888999999999999999954 68899999986543  2334677889999999999999999998875       568


Q ss_pred             EEEEEeecCCCcHHHhhccCC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          102 IFLIFEYVPNGTLRSWISGHA-WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      .++|+||++ ++|.+++.... ...+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        74 ~~~v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  149 (285)
T cd07861          74 LYLIFEFLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHS---RRVLHRDLKPQNLLIDNKGVIKLADFGLAR  149 (285)
T ss_pred             EEEEEecCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCCHHHEEEcCCCcEEECccccee
Confidence            999999997 58888876432 2468899999999999999999999   799999999999999999999999999987


Q ss_pred             hcccccc-cccccccccccCCCCC
Q 028725          181 LAENAEK-VGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~~aPE~~  203 (205)
                      ....... .....++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~y~aPE~~  173 (285)
T cd07861         150 AFGIPVRVYTHEVVTLWYRAPEVL  173 (285)
T ss_pred             ecCCCcccccCCcccccccChHHh
Confidence            5543322 2223668889999964

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.96  E-value=5.4e-28  Score=184.58  Aligned_cols=167  Identities=21%  Similarity=0.384  Sum_probs=140.0

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCc---------CHHHHHHHHHHHhccCCCcccccccceeeecc
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH---------STRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~---------~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   94 (205)
                      +|.+...||+|++|.||+|... ++..+++|.+......         ..+.+.+|+.+++.++||||+++.+.+..   
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---   77 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLD---   77 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEe---
Confidence            5888999999999999999954 5889999988654322         12467789999999999999999998765   


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEc
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  174 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~  174 (205)
                          ....++++||+++++|.+++....  .+++..+..++.|++.+|.|||+   .+++|+||+|+||++++++.++|+
T Consensus        78 ----~~~~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~~l~~~l~~lH~---~~ivH~di~p~nil~~~~~~~~l~  148 (267)
T cd06628          78 ----ADHLNIFLEYVPGGSVAALLNNYG--AFEETLVRNFVRQILKGLNYLHN---RGIIHRDIKGANILVDNKGGIKIS  148 (267)
T ss_pred             ----CCccEEEEEecCCCCHHHHHHhcc--CccHHHHHHHHHHHHHHHHHHHh---cCcccccCCHHHEEEcCCCCEEec
Confidence                568899999999999999997653  67888899999999999999999   799999999999999999999999


Q ss_pred             CCCchhhccccc-------ccccccccccccCCCCC
Q 028725          175 SYNLPLLAENAE-------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       175 Dfg~a~~~~~~~-------~~~~~~~~~~~~aPE~~  203 (205)
                      |||+++......       ......++..|+|||..
T Consensus       149 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~  184 (267)
T cd06628         149 DFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVV  184 (267)
T ss_pred             ccCCCcccccccccCCccccccccCCCcCccChhHh
Confidence            999997665321       11123578889999964

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.96  E-value=1.8e-28  Score=188.39  Aligned_cols=172  Identities=19%  Similarity=0.300  Sum_probs=139.2

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecc
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   94 (205)
                      ..++|++.+.||+|++|.||.|...      ++..+|+|++.... ......+.+|+.+++.++||||+++.+.+..   
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~---   80 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ---   80 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC---
Confidence            4678999999999999999999853      24679999886432 2334568889999999999999999988754   


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCC--------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHA--------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD  166 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~--------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~  166 (205)
                          ....++++||+++++|.+++....        ...+++..+..++.|++.||.|||+   .+++|+||||+||+++
T Consensus        81 ----~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~~vH~dlkp~Nil~~  153 (277)
T cd05062          81 ----GQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVA  153 (277)
T ss_pred             ----CCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCcchheEEEc
Confidence                567899999999999999986422        1235677888999999999999999   7999999999999999


Q ss_pred             CCCceeEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          167 QNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       167 ~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      +++.++|+|||++........   .....++..|+|||+.
T Consensus       154 ~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  193 (277)
T cd05062         154 EDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESL  193 (277)
T ss_pred             CCCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHh
Confidence            999999999999875543221   1123557789999974

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.96  E-value=4.3e-28  Score=206.11  Aligned_cols=169  Identities=18%  Similarity=0.305  Sum_probs=144.3

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC---cCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .++|.+.+.||.|+||.||+|... +++.||+|+++....   .....+..|+.+++.++||||++++..+..       
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~-------   75 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQS-------   75 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEE-------
Confidence            478999999999999999999965 688999999975432   223567889999999999999999887765       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....++||||+.+++|.+++....  .+++..++.++.|++.||.|||.   .+|+||||||+||+++.++.++|+|||+
T Consensus        76 ~~~~~lVmEy~~g~~L~~li~~~~--~l~~~~~~~i~~qil~aL~yLH~---~gIiHrDLKP~NILl~~~g~vkL~DFGl  150 (669)
T cd05610          76 ANNVYLVMEYLIGGDVKSLLHIYG--YFDEEMAVKYISEVALALDYLHR---HGIIHRDLKPDNMLISNEGHIKLTDFGL  150 (669)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCccHHHEEEcCCCCEEEEeCCC
Confidence            568999999999999999987543  67888899999999999999999   7999999999999999999999999999


Q ss_pred             hhhccccc-ccccccccccccCCCCC
Q 028725          179 PLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ++...... ......+|+.|++||..
T Consensus       151 s~~~~~~~~~~~~~~~t~~~~~pe~~  176 (669)
T cd05610         151 SKVTLNRELNMMDILTTPSMAKPKND  176 (669)
T ss_pred             CccccCCcccccccccCccccCcccc
Confidence            98765443 33345788899999863

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.96  E-value=2.3e-28  Score=190.25  Aligned_cols=171  Identities=27%  Similarity=0.408  Sum_probs=137.3

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCc--EEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGT--FIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~--~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .++|++.+.||+|+||.||+|..+ ++.  .+++|.++... ......+.+|+.++.++ +|+||+++.+.+..      
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~------   79 (303)
T cd05088           6 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH------   79 (303)
T ss_pred             hhhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECC------
Confidence            478999999999999999999964 454  35677665332 23345678899999999 89999999998865      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccE
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHA--------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDI  163 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~--------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~ni  163 (205)
                       .+..++++||+++++|.+++....              ...+++..++.++.|++.|+.|||+   .+++||||||+||
T Consensus        80 -~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~---~gi~H~dlkp~Ni  155 (303)
T cd05088          80 -RGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNI  155 (303)
T ss_pred             -CCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHh---CCccccccchheE
Confidence             567999999999999999986431              1357889999999999999999999   7999999999999


Q ss_pred             EeCCCCceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          164 LLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       164 lv~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ++++++.++|+|||++..............+..|+|||..
T Consensus       156 li~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~  195 (303)
T cd05088         156 LVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESL  195 (303)
T ss_pred             EecCCCcEEeCccccCcccchhhhcccCCCcccccCHHHH
Confidence            9999999999999998644322222223446679999963

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.96  E-value=3.8e-28  Score=184.44  Aligned_cols=168  Identities=20%  Similarity=0.399  Sum_probs=141.2

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ...+|.+.+.||+|+||.||++... +..+++|.++..  ...+.+.+|+.+++.++|+|++++.+.+..      ..+.
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~------~~~~   74 (256)
T cd05082           4 NMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVE------EKGG   74 (256)
T ss_pred             cHHhCeeeeeecccCCCeEEEEEEc-CCcEEEEEeCCC--chHHHHHHHHHHHHhCCCCCeeeEEEEEEc------CCCc
Confidence            3568999999999999999999865 788999988643  335678899999999999999999987643      1456


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++||+++++|.+++..+....+++.....++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        75 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~  151 (256)
T cd05082          75 LYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEA---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKE  151 (256)
T ss_pred             eEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeccccchheEEEcCCCcEEecCCcccee
Confidence            8999999999999999986654568899999999999999999999   7999999999999999999999999999875


Q ss_pred             cccccccccccccccccCCCCC
Q 028725          182 AENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      .....  .....+..|+|||..
T Consensus       152 ~~~~~--~~~~~~~~y~aPE~~  171 (256)
T cd05082         152 ASSTQ--DTGKLPVKWTAPEAL  171 (256)
T ss_pred             ccccC--CCCccceeecCHHHH
Confidence            54332  223455689999963

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.96  E-value=6e-29  Score=212.17  Aligned_cols=171  Identities=23%  Similarity=0.439  Sum_probs=142.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEecC--Cc----EEEEEEeccc-CCcCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKN--GT----FIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~--~~----~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      ..+....+.||+|.||.||.|...+  |.    .||+|.++.. +.+...+|.+|..+++.+.||||++++|+|++    
T Consensus       691 ~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~----  766 (1025)
T KOG1095|consen  691 RKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLD----  766 (1025)
T ss_pred             hhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecC----
Confidence            3456778899999999999999653  43    4889988765 46678899999999999999999999999987    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccC-----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGH-----AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  170 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~  170 (205)
                         ....++++|||.+|+|.+++.+.     ....++...++.++.+|++|+.||++   +.++||||.++|+|++....
T Consensus       767 ---~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~---~~fvHRDLAaRNCLL~~~r~  840 (1025)
T KOG1095|consen  767 ---SGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLES---KHFVHRDLAARNCLLDERRV  840 (1025)
T ss_pred             ---CCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHh---CCCcCcchhhhheeecccCc
Confidence               66789999999999999999854     12468889999999999999999999   79999999999999999999


Q ss_pred             eeEcCCCchh-hccccccccc-c-cccccccCCCCC
Q 028725          171 AKISSYNLPL-LAENAEKVGH-V-TPYSGSINPTNS  203 (205)
Q Consensus       171 ~~l~Dfg~a~-~~~~~~~~~~-~-~~~~~~~aPE~~  203 (205)
                      +||+|||+|+ +++...-... . .--..|||||++
T Consensus       841 VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl  876 (1025)
T KOG1095|consen  841 VKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESL  876 (1025)
T ss_pred             EEEcccchhHhhhhchheeccCccccceecCCHHHH
Confidence            9999999998 4443321111 1 233579999975

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.96  E-value=6.9e-28  Score=187.29  Aligned_cols=169  Identities=17%  Similarity=0.330  Sum_probs=141.3

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|.+.+.||.|+||.||+|... +++.||+|.++... ......+.+|+.+++.++||||+++.+.+..       ..
T Consensus         5 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~-------~~   77 (301)
T cd07873           5 LETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHT-------EK   77 (301)
T ss_pred             ccceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEec-------CC
Confidence            467999999999999999999954 58899999987553 3334567789999999999999999998865       56


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++++||+.+ +|.+++.... ..+++..+..++.|++.||.|||+   .+++|+||||+||++++++.++|+|||++.
T Consensus        78 ~~~lv~e~~~~-~l~~~l~~~~-~~~~~~~~~~~~~qi~~aL~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~  152 (301)
T cd07873          78 SLTLVFEYLDK-DLKQYLDDCG-NSINMHNVKLFLFQLLRGLNYCHR---RKVLHRDLKPQNLLINERGELKLADFGLAR  152 (301)
T ss_pred             eEEEEEecccc-CHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHHHEEECCCCcEEECcCcchh
Confidence            79999999974 8888876543 367889999999999999999999   799999999999999999999999999997


Q ss_pred             hcccccc-cccccccccccCCCCC
Q 028725          181 LAENAEK-VGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~~aPE~~  203 (205)
                      ....... .....++..|+|||..
T Consensus       153 ~~~~~~~~~~~~~~~~~y~~PE~~  176 (301)
T cd07873         153 AKSIPTKTYSNEVVTLWYRPPDIL  176 (301)
T ss_pred             ccCCCCCcccccceeecccCcHHH
Confidence            6543322 2234678899999963

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.7e-29  Score=209.08  Aligned_cols=171  Identities=24%  Similarity=0.427  Sum_probs=142.9

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccCCc-CHHHHHHHHHHHhccCCCcccccccceeeecc
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   94 (205)
                      ..++-...+.||+|.||.||+|+..      +...||||.++..... ...+|.+|++++..++||||++++|+|..   
T Consensus       484 ~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~---  560 (774)
T KOG1026|consen  484 PRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCRE---  560 (774)
T ss_pred             chhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEcc---
Confidence            3466677889999999999999843      2446899999876554 67889999999999999999999999987   


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccC--------C----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCcccc
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGH--------A----WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITD  162 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~--------~----~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~n  162 (205)
                          ++..++|+||+..|+|.+|+..+        .    ..+++....+.|+.||+.||.||-+   +.++||||.++|
T Consensus       561 ----~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~---~~FVHRDLATRN  633 (774)
T KOG1026|consen  561 ----GDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSS---HHFVHRDLATRN  633 (774)
T ss_pred             ----CCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh---Ccccccchhhhh
Confidence                77899999999999999998632        1    2238899999999999999999999   799999999999


Q ss_pred             EEeCCCCceeEcCCCchh-hccccc-ccc-cccccccccCCCC
Q 028725          163 ILLDQNLVAKISSYNLPL-LAENAE-KVG-HVTPYSGSINPTN  202 (205)
Q Consensus       163 ilv~~~~~~~l~Dfg~a~-~~~~~~-~~~-~~~~~~~~~aPE~  202 (205)
                      +||.++..+||+|||+++ .+..+. +.. ...--..||+||.
T Consensus       634 CLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEs  676 (774)
T KOG1026|consen  634 CLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPES  676 (774)
T ss_pred             ceeccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHH
Confidence            999999999999999996 333332 222 2244568999996

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.96  E-value=5e-28  Score=186.29  Aligned_cols=186  Identities=18%  Similarity=0.336  Sum_probs=151.7

Q ss_pred             ccCHHHHHHHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhcc-CCCccccccccee
Q 028725           13 TFSLEELEEATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCF   90 (205)
Q Consensus        13 ~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~   90 (205)
                      +.++.++....+.|++.+.||.|+||.||+|.. .+++.+++|++.... .....+..|+.+++.+ +|+|++++.+.+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~   83 (282)
T cd06636           5 DIDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-DEEEEIKLEINMLKKYSHHRNIATYYGAFI   83 (282)
T ss_pred             hhhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-HHHHHHHHHHHHHHHhcCCCcEEEEeeehh
Confidence            346667667789999999999999999999995 468899999986543 3345677888888888 6999999999876


Q ss_pred             eecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc
Q 028725           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  170 (205)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~  170 (205)
                      .... .......+++|||+++++|.+++.......+++..++.++.|++.++.|||+   .+++|+||+|+||++++++.
T Consensus        84 ~~~~-~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~---~~ivH~dl~~~nili~~~~~  159 (282)
T cd06636          84 KKSP-PGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHA---HKVIHRDIKGQNVLLTENAE  159 (282)
T ss_pred             cccc-cCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCC
Confidence            4221 1224678999999999999999876554568888899999999999999999   79999999999999999999


Q ss_pred             eeEcCCCchhhcccc-cccccccccccccCCCCC
Q 028725          171 AKISSYNLPLLAENA-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       171 ~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~aPE~~  203 (205)
                      ++|+|||++...... .......++..|+|||..
T Consensus       160 ~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l  193 (282)
T cd06636         160 VKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVI  193 (282)
T ss_pred             EEEeeCcchhhhhccccCCCcccccccccCHhhc
Confidence            999999998755432 223345788999999964

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.96  E-value=2e-29  Score=206.78  Aligned_cols=170  Identities=24%  Similarity=0.395  Sum_probs=145.6

Q ss_pred             cCCCcceeeccCcceEEEEEEecC----CcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLKN----GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~~----~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      +.-.+.+.||.|.||+|+.|..+.    ...||||.++... .....+|..|+.++.+.+||||+++.|+...       
T Consensus       629 s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTk-------  701 (996)
T KOG0196|consen  629 SCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTK-------  701 (996)
T ss_pred             hheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEec-------
Confidence            445788899999999999999653    3479999998764 5567789999999999999999999999876       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      .....+|+|||++|+|.+|+..+.+ .++...+..+.++|+.||+||-+   ++++||||.++||||+++..||++|||+
T Consensus       702 s~PvMIiTEyMENGsLDsFLR~~DG-qftviQLVgMLrGIAsGMkYLsd---m~YVHRDLAARNILVNsnLvCKVsDFGL  777 (996)
T KOG0196|consen  702 SKPVMIITEYMENGSLDSFLRQNDG-QFTVIQLVGMLRGIASGMKYLSD---MNYVHRDLAARNILVNSNLVCKVSDFGL  777 (996)
T ss_pred             CceeEEEhhhhhCCcHHHHHhhcCC-ceEeehHHHHHHHHHHHhHHHhh---cCchhhhhhhhheeeccceEEEeccccc
Confidence            5678899999999999999998774 58899999999999999999999   8999999999999999999999999999


Q ss_pred             hhhccccccccc-c---cccccccCCCCCC
Q 028725          179 PLLAENAEKVGH-V---TPYSGSINPTNSA  204 (205)
Q Consensus       179 a~~~~~~~~~~~-~---~~~~~~~aPE~~~  204 (205)
                      ++.+.++.+... .   --...|.|||+-|
T Consensus       778 SRvledd~~~~ytt~GGKIPiRWTAPEAIa  807 (996)
T KOG0196|consen  778 SRVLEDDPEAAYTTLGGKIPIRWTAPEAIA  807 (996)
T ss_pred             eeecccCCCccccccCCccceeecChhHhh
Confidence            998877653211 1   1225799999754

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.96  E-value=6.4e-28  Score=183.09  Aligned_cols=171  Identities=16%  Similarity=0.275  Sum_probs=142.7

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +|++.+.||.|++|.||++... +++.+++|.+....  ....+.+.+|+.+++.++|+|++++.+.+..      ....
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~------~~~~   74 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEG------EDGL   74 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecC------CCCE
Confidence            4889999999999999999954 57899999986543  2345668889999999999999998876532      1346


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      +++++|++++++|.+++.......+++..+..++.+++.++.+||+   .+++|+||+|+||+++.++.++|+|||++..
T Consensus        75 ~~lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~---~~i~H~di~p~nil~~~~~~~~l~df~~~~~  151 (257)
T cd08223          75 LYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHE---KHILHRDLKTQNVFLTRTNIIKVGDLGIARV  151 (257)
T ss_pred             EEEEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCchhEEEecCCcEEEecccceEE
Confidence            8999999999999999876544568999999999999999999999   7999999999999999999999999999976


Q ss_pred             ccccc-ccccccccccccCCCCCC
Q 028725          182 AENAE-KVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       182 ~~~~~-~~~~~~~~~~~~aPE~~~  204 (205)
                      ..... ......++..|+|||...
T Consensus       152 ~~~~~~~~~~~~~~~~y~aPE~~~  175 (257)
T cd08223         152 LENQCDMASTLIGTPYYMSPELFS  175 (257)
T ss_pred             ecccCCccccccCCcCccChhHhc
Confidence            65432 223346888999999753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.96  E-value=5.8e-28  Score=187.28  Aligned_cols=167  Identities=23%  Similarity=0.356  Sum_probs=141.5

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCc-----CHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH-----STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~-----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      +|+..+.||+|++|.||+|... +++.|++|.++.....     ....+.+|+.+++.++|+||+++.+.+.+       
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-------   73 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGH-------   73 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeec-------
Confidence            4788899999999999999954 6889999999765322     23456789999999999999999998865       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      .+..++|+||+ +++|.+++.... ..+++..+..++.|+++||.|||+   .+++|+||+|+||++++++.++|+|||+
T Consensus        74 ~~~~~lv~e~~-~~~L~~~i~~~~-~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dl~p~nill~~~~~~~l~dfg~  148 (298)
T cd07841          74 KSNINLVFEFM-ETDLEKVIKDKS-IVLTPADIKSYMLMTLRGLEYLHS---NWILHRDLKPNNLLIASDGVLKLADFGL  148 (298)
T ss_pred             CCEEEEEEccc-CCCHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCChhhEEEcCCCCEEEcccee
Confidence            56899999999 889999987643 368899999999999999999999   7999999999999999999999999999


Q ss_pred             hhhccccc-ccccccccccccCCCCC
Q 028725          179 PLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      +....... ......++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~y~aPE~~  174 (298)
T cd07841         149 ARSFGSPNRKMTHQVVTRWYRAPELL  174 (298)
T ss_pred             eeeccCCCccccccccceeeeCHHHH
Confidence            98766543 22334667889999964

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.96  E-value=6.4e-28  Score=185.81  Aligned_cols=168  Identities=15%  Similarity=0.262  Sum_probs=142.3

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ++|+..+.||+|++|.||+|... +++.+++|++....  ....+.+.+|+.+++.++|+|++++.+.+..       ..
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-------~~   73 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRR-------KR   73 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEee-------CC
Confidence            47899999999999999999965 58899999986543  2234567889999999999999999998866       56


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++++||++++++..++....  .+++..+..++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        74 ~~~~v~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~ql~~~l~~LH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  148 (286)
T cd07847          74 KLHLVFEYCDHTVLNELEKNPR--GVPEHLIKKIIWQTLQAVNFCHK---HNCIHRDVKPENILITKQGQIKLCDFGFAR  148 (286)
T ss_pred             EEEEEEeccCccHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCChhhEEEcCCCcEEECccccce
Confidence            8899999999988887765443  68899999999999999999999   799999999999999999999999999998


Q ss_pred             hccccc-ccccccccccccCCCCC
Q 028725          181 LAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ...... ......++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~aPE~~  172 (286)
T cd07847         149 ILTGPGDDYTDYVATRWYRAPELL  172 (286)
T ss_pred             ecCCCcccccCcccccccCCHHHH
Confidence            766543 22334678889999963

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.96  E-value=3.9e-28  Score=187.05  Aligned_cols=170  Identities=23%  Similarity=0.346  Sum_probs=138.9

Q ss_pred             cCCCcceeeccCcceEEEEEEec-----CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-----NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-----~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ++|++.+.||+|+||.||+|...     ++..+++|.+.... ......+.+|+.+++.++||||+++.+.+..      
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~------   78 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQ------   78 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEec------
Confidence            67889999999999999999842     35789999987443 2334668889999999999999999998765      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCC---------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCcccc
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHA---------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITD  162 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~---------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~n  162 (205)
                       ....+++|||+++++|.+++..+.               ...+++.....++.|++.||.|||+   .+++|+||||+|
T Consensus        79 -~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---~~i~H~dlkp~n  154 (283)
T cd05090          79 -EQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSS---HFFVHKDLAARN  154 (283)
T ss_pred             -CCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---cCeehhccccce
Confidence             567899999999999999985321               1247788889999999999999999   799999999999


Q ss_pred             EEeCCCCceeEcCCCchhhccccc---ccccccccccccCCCCC
Q 028725          163 ILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       163 ilv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      |++++++.++|+|||+++......   ......++..|+|||+.
T Consensus       155 ili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  198 (283)
T cd05090         155 ILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAI  198 (283)
T ss_pred             EEEcCCCcEEeccccccccccCCcceecccCCCccceecChHHh
Confidence            999999999999999997654322   11223456679999975

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.96  E-value=3.4e-28  Score=186.92  Aligned_cols=171  Identities=23%  Similarity=0.425  Sum_probs=141.5

Q ss_pred             hcCCCcceeeccCcceEEEEEEecC------CcEEEEEEecccCCc-CHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~------~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      ..+|.+.+.||+|+||.||+|...+      +..+++|.++..... ....+.+|+.+++.++|+||+++.+.+..    
T Consensus         4 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~----   79 (280)
T cd05049           4 RDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTE----   79 (280)
T ss_pred             hHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEec----
Confidence            4578899999999999999998532      478999999755433 35678899999999999999999998866    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCC------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccE
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHA------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDI  163 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~ni  163 (205)
                         ....+++|||+++++|.+++....            ...+++..+..++.|++.++.|||+   .+++|+||||+||
T Consensus        80 ---~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~---~~i~h~dlkp~ni  153 (280)
T cd05049          80 ---GDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLAS---QHFVHRDLATRNC  153 (280)
T ss_pred             ---CCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhh---CCeeccccccceE
Confidence               567999999999999999986432            1347888899999999999999999   7999999999999


Q ss_pred             EeCCCCceeEcCCCchhhccccc---ccccccccccccCCCCC
Q 028725          164 LLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       164 lv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      +++.++.++|+|||++.......   ......++..|+|||..
T Consensus       154 li~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  196 (280)
T cd05049         154 LVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESI  196 (280)
T ss_pred             EEcCCCeEEECCcccceecccCcceecCCCCcccceecChhhh
Confidence            99999999999999997543322   12233556789999964

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.96  E-value=3.4e-29  Score=200.02  Aligned_cols=169  Identities=20%  Similarity=0.390  Sum_probs=143.7

Q ss_pred             cCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcC-HHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHS-TRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      ....+.+.||+|-||+|.+|....+.+||+|.++...... ..+|..|+++|.+++||||+.+.|+|..       ++.+
T Consensus       538 s~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~-------DePi  610 (807)
T KOG1094|consen  538 SRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQ-------DDPL  610 (807)
T ss_pred             hheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeec-------CCch
Confidence            4578889999999999999998778999999998765544 4889999999999999999999999987       6789


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      ++++||+++|+|.+++..+.-..........|+.||+.||+||.+   .+++|||+.++|+|+|.++++||+|||+++.+
T Consensus       611 cmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes---~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~l  687 (807)
T KOG1094|consen  611 CMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLES---LNFVHRDLATRNCLVDGEFTIKIADFGMSRNL  687 (807)
T ss_pred             HHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHh---hchhhccccccceeecCcccEEecCccccccc
Confidence            999999999999999998753345566677799999999999999   89999999999999999999999999999843


Q ss_pred             cccc--cc-ccccccccccCCCC
Q 028725          183 ENAE--KV-GHVTPYSGSINPTN  202 (205)
Q Consensus       183 ~~~~--~~-~~~~~~~~~~aPE~  202 (205)
                      -...  +. ....-...|||||.
T Consensus       688 ysg~yy~vqgr~vlpiRwmawEs  710 (807)
T KOG1094|consen  688 YSGDYYRVQGRAVLPIRWMAWES  710 (807)
T ss_pred             ccCCceeeecceeeeeeehhHHH
Confidence            3221  11 12244578999985

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.96  E-value=3.5e-28  Score=187.83  Aligned_cols=171  Identities=23%  Similarity=0.429  Sum_probs=141.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      .++|.+.+.||+|+||.||++...      ++..+++|.+..........+.+|+.+++.++||||+++.+.+..     
T Consensus         4 ~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----   78 (288)
T cd05093           4 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVE-----   78 (288)
T ss_pred             hHHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-----
Confidence            367899999999999999999742      245688998875555556778999999999999999999998865     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCC-----------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEe
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHA-----------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL  165 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~-----------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv  165 (205)
                        .+..++++||+++++|.+++....           ...+++..++.++.|++.+|.|||+   .+++||||||+||++
T Consensus        79 --~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~---~~i~H~dlkp~Nili  153 (288)
T cd05093          79 --GDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLV  153 (288)
T ss_pred             --CCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccCcceEEE
Confidence              567899999999999999986432           1348999999999999999999999   799999999999999


Q ss_pred             CCCCceeEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          166 DQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       166 ~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      ++++.++|+|||++........   .....++..|+|||+.
T Consensus       154 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  194 (288)
T cd05093         154 GENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESI  194 (288)
T ss_pred             ccCCcEEeccCCccccccCCceeecCCCCCccccccCHHHh
Confidence            9999999999999975543221   1223456789999964

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.96  E-value=9.7e-28  Score=187.68  Aligned_cols=164  Identities=20%  Similarity=0.269  Sum_probs=131.4

Q ss_pred             ceeeccCcceEEEEEEec---CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEE
Q 028725           29 SAFMGEGSKGQMYRGRLK---NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (205)
                      ++.||+|+||.||+|...   +++.+|+|.++...  ......+|+.+++.++||||+++.+.+..     ......+++
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~~~~~~~lv   78 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLS-----HADRKVWLL   78 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC--CcHHHHHHHHHHHhcCCCCCcceeeeEec-----CCCcEEEEE
Confidence            468999999999999854   46789999986432  23456789999999999999999887754     224578999


Q ss_pred             EeecCCCcHHHhhccC-------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEe----CCCCceeEc
Q 028725          106 FEYVPNGTLRSWISGH-------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL----DQNLVAKIS  174 (205)
Q Consensus       106 ~e~~~~~~L~~~~~~~-------~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv----~~~~~~~l~  174 (205)
                      +|++.+ +|.+++...       ....+++..+..++.|++.||.|||+   .+++||||||+||++    +..+.++|+
T Consensus        79 ~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivHrDlkp~Nil~~~~~~~~~~~kl~  154 (317)
T cd07868          79 FDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPERGRVKIA  154 (317)
T ss_pred             EeccCC-CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHh---CCEEcCCCCHHHEEEecCCCCcCcEEEe
Confidence            999855 888876521       12358889999999999999999999   799999999999999    456789999


Q ss_pred             CCCchhhccccc----ccccccccccccCCCCC
Q 028725          175 SYNLPLLAENAE----KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       175 Dfg~a~~~~~~~----~~~~~~~~~~~~aPE~~  203 (205)
                      |||+++......    ......+|..|+|||..
T Consensus       155 DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~  187 (317)
T cd07868         155 DMGFARLFNSPLKPLADLDPVVVTFWYRAPELL  187 (317)
T ss_pred             ecCceeccCCCCccccccCCccccccccCCHHH
Confidence            999998765432    22345789999999964

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.96  E-value=4.1e-28  Score=185.58  Aligned_cols=170  Identities=24%  Similarity=0.424  Sum_probs=139.5

Q ss_pred             hcCCCcceeeccCcceEEEEEEecC-C---cEEEEEEeccc-CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKN-G---TFIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~-~---~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .++|++.+.||+|+||.||+|.... +   ..|++|+++.. .......+..|+..++.++||||+++.+.+..      
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~------   76 (269)
T cd05065           3 VSCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTK------   76 (269)
T ss_pred             hHHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECC------
Confidence            3568899999999999999999643 3   36999998754 23345678899999999999999999988755      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       +...++++||+++++|.+++.... ..+++..++.++.|++.|+.|||+   .+++|+||+|+||+++.++.++|+|||
T Consensus        77 -~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~l~~al~~lH~---~g~~H~dl~p~nili~~~~~~kl~dfg  151 (269)
T cd05065          77 -SRPVMIITEFMENGALDSFLRQND-GQFTVIQLVGMLRGIAAGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFG  151 (269)
T ss_pred             -CCceEEEEecCCCCcHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccChheEEEcCCCcEEECCCc
Confidence             567899999999999999987543 468899999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccccccc------cccccccCCCCC
Q 028725          178 LPLLAENAEKVGHV------TPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~~~~------~~~~~~~aPE~~  203 (205)
                      ++............      ..+..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  183 (269)
T cd05065         152 LSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAI  183 (269)
T ss_pred             cccccccCccccccccccCCCcceeecCHhHh
Confidence            99766543221111      123579999975

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.96  E-value=6.1e-28  Score=185.76  Aligned_cols=170  Identities=12%  Similarity=0.262  Sum_probs=137.7

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC-cCHHHHHHHHHH-HhccCCCcccccccceeeecccCCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIEL-ISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~~e~~~-l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ++|++.+.||+|+||.||++... +|+.||+|+++.... .....+..|... ++...|||++++.+.+..       .+
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~-------~~   73 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFR-------EG   73 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEec-------CC
Confidence            47899999999999999999954 699999999975532 223345555554 566789999999998865       56


Q ss_pred             eEEEEEeecCCCcHHHhhccC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725          101 RIFLIFEYVPNGTLRSWISGH--AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ..++++||++ ++|.+++...  ....+++..++.++.|++.||.|||++  .+++|+||||+||++++++.++|+|||+
T Consensus        74 ~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~--~~i~h~dlkp~nil~~~~~~~kl~dfg~  150 (283)
T cd06617          74 DVWICMEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSK--LSVIHRDVKPSNVLINRNGQVKLCDFGI  150 (283)
T ss_pred             cEEEEhhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeeccc
Confidence            7999999996 5888877532  224689999999999999999999983  3899999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +.............++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~y~aPE~~  175 (283)
T cd06617         151 SGYLVDSVAKTIDAGCKPYMAPERI  175 (283)
T ss_pred             ccccccccccccccCCccccChhhc
Confidence            9876554433445788899999964

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.96  E-value=5.7e-28  Score=183.05  Aligned_cols=163  Identities=19%  Similarity=0.371  Sum_probs=134.1

Q ss_pred             eeeccCcceEEEEEEe-cCCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEEe
Q 028725           30 AFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE  107 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e  107 (205)
                      +.||+|+||.||+|.. .+++.+++|.+.... ......+.+|+.+++.++||||+++.+.+..       ....++++|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~~~lv~e   73 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQ-------KQPIYIVME   73 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcC-------CCCeEEEEe
Confidence            4689999999999995 468899999886443 2334568899999999999999999998865       567899999


Q ss_pred             ecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcccccc
Q 028725          108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK  187 (205)
Q Consensus       108 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~  187 (205)
                      |+++++|.+++.... ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++....+...
T Consensus        74 ~~~~~~L~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~  149 (252)
T cd05084          74 LVQGGDFLTFLRTEG-PRLKVKELIQMVENAAAGMEYLES---KHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVY  149 (252)
T ss_pred             eccCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCccccccchheEEEcCCCcEEECccccCcccccccc
Confidence            999999999986543 357899999999999999999999   7999999999999999999999999999876543221


Q ss_pred             c---ccccccccccCCCCC
Q 028725          188 V---GHVTPYSGSINPTNS  203 (205)
Q Consensus       188 ~---~~~~~~~~~~aPE~~  203 (205)
                      .   .....+..|+|||..
T Consensus       150 ~~~~~~~~~~~~y~aPE~~  168 (252)
T cd05084         150 ASTGGMKQIPVKWTAPEAL  168 (252)
T ss_pred             cccCCCCCCceeecCchhh
Confidence            1   111234579999964

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.96  E-value=6.3e-28  Score=186.01  Aligned_cols=171  Identities=20%  Similarity=0.380  Sum_probs=141.0

Q ss_pred             cCCCcceeeccCcceEEEEEEe-----cCCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-----KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-----~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ..|++.+.||+|+||.||.+..     .++..|++|.++... ......+.+|+.+++.++|||++++.+.+..     .
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~   78 (284)
T cd05079           4 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTE-----D   78 (284)
T ss_pred             hhhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEec-----C
Confidence            4578999999999999999974     247789999986543 3345678899999999999999999987754     2


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      .....++++||+++++|.+++.... ..+++..++.++.|++.+|.|||+   .+++||||||+||+++.++.++|+|||
T Consensus        79 ~~~~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~i~~~i~~aL~~lH~---~gi~H~dlkp~Nil~~~~~~~~l~dfg  154 (284)
T cd05079          79 GGNGIKLIMEFLPSGSLKEYLPRNK-NKINLKQQLKYAVQICKGMDYLGS---RQYVHRDLAARNVLVESEHQVKIGDFG  154 (284)
T ss_pred             CCCceEEEEEccCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccchheEEEcCCCCEEECCCc
Confidence            2356899999999999999986543 357899999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccc----cccccccccccCCCCC
Q 028725          178 LPLLAENAEK----VGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~----~~~~~~~~~~~aPE~~  203 (205)
                      +++.......    .....++..|+|||..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~y~apE~~  184 (284)
T cd05079         155 LTKAIETDKEYYTVKDDLDSPVFWYAPECL  184 (284)
T ss_pred             cccccccCccceeecCCCCCCccccCHHHh
Confidence            9986654321    1223556679999953

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.96  E-value=5.4e-28  Score=184.10  Aligned_cols=169  Identities=22%  Similarity=0.377  Sum_probs=140.2

Q ss_pred             hcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      .++|++.+.||+|++|.||++....+..+++|.+... ....+.+.+|+.+++.++|+|++++.+.+.        ....
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~--------~~~~   75 (260)
T cd05069           5 RESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPG-TMMPEAFLQEAQIMKKLRHDKLVPLYAVVS--------EEPI   75 (260)
T ss_pred             hHHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccC-CccHHHHHHHHHHHHhCCCCCeeeEEEEEc--------CCCc
Confidence            4679999999999999999999776678999987643 234567888999999999999999887653        3457


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      +++|||+.+++|.+++.......+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++...
T Consensus        76 ~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~  152 (260)
T cd05069          76 YIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIER---MNYIHRDLRAANILVGDNLVCKIADFGLARLI  152 (260)
T ss_pred             EEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccCcceEEEcCCCeEEECCCccceEc
Confidence            899999999999999976554568899999999999999999999   79999999999999999999999999999766


Q ss_pred             cccccc--ccccccccccCCCCC
Q 028725          183 ENAEKV--GHVTPYSGSINPTNS  203 (205)
Q Consensus       183 ~~~~~~--~~~~~~~~~~aPE~~  203 (205)
                      ......  ....++..|+|||..
T Consensus       153 ~~~~~~~~~~~~~~~~y~~Pe~~  175 (260)
T cd05069         153 EDNEYTARQGAKFPIKWTAPEAA  175 (260)
T ss_pred             cCCcccccCCCccchhhCCHHHh
Confidence            443211  123456789999963

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.96  E-value=4.7e-28  Score=185.11  Aligned_cols=170  Identities=23%  Similarity=0.409  Sum_probs=139.8

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-C---CcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-N---GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~---~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ..+|++.+.||+|+||.||+|... +   +..+++|.++... ......+.+|+.+++.++||||+++.+.+..      
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~------   76 (267)
T cd05066           3 ASCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTK------   76 (267)
T ss_pred             HHHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec------
Confidence            467899999999999999999853 2   3368999886543 2335678889999999999999999988754      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ....+++||++++++|.+++.... ..+++...+.++.|++.++.|||+   .+++|+||||+||++++++.++|+|||
T Consensus        77 -~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~---~~i~h~dlkp~nili~~~~~~~l~dfg  151 (267)
T cd05066          77 -SKPVMIVTEYMENGSLDAFLRKHD-GQFTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNILVNSNLVCKVSDFG  151 (267)
T ss_pred             -CCccEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCEeehhhchhcEEECCCCeEEeCCCC
Confidence             567899999999999999987543 367889999999999999999999   799999999999999999999999999


Q ss_pred             chhhccccccc----ccccccccccCCCCC
Q 028725          178 LPLLAENAEKV----GHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~----~~~~~~~~~~aPE~~  203 (205)
                      ++.........    ....++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~  181 (267)
T cd05066         152 LSRVLEDDPEAAYTTRGGKIPIRWTAPEAI  181 (267)
T ss_pred             cccccccccceeeecCCCccceeecCHhHh
Confidence            99866543221    112335679999974

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.96  E-value=6.3e-28  Score=184.19  Aligned_cols=170  Identities=14%  Similarity=0.274  Sum_probs=143.3

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|++.+.||+|++|.||++.. .+++.+++|.+....   ......+.+|+.+++.++|+||+++.+.+..       .
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-------~   74 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIE-------D   74 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEe-------C
Confidence            5788999999999999999994 578999999886542   2234577889999999999999999998876       5


Q ss_pred             CeEEEEEeecCCCcHHHhhccC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725          100 SRIFLIFEYVPNGTLRSWISGH--AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      ...++++|++++++|.+++...  ....+++...+.++.|++.+|.|||+   .+++|+||+|+||+++.++.++|+|||
T Consensus        75 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~p~nili~~~~~~~l~dfg  151 (267)
T cd08229          75 NELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHS---RRVMHRDIKPANVFITATGVVKLGDLG  151 (267)
T ss_pred             CeEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEECcch
Confidence            6899999999999999988632  22468899999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccc-cccccccccccCCCCC
Q 028725          178 LPLLAENAEK-VGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~-~~~~~~~~~~~aPE~~  203 (205)
                      ++........ .....++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~ape~~  178 (267)
T cd08229         152 LGRFFSSKTTAAHSLVGTPYYMSPERI  178 (267)
T ss_pred             hhhccccCCcccccccCCcCccCHHHh
Confidence            9876654332 2234788899999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1e-27  Score=182.91  Aligned_cols=170  Identities=19%  Similarity=0.318  Sum_probs=141.3

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC-----CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK-----SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .+|++.+.||+|++|.||+|.. .+++.+++|.+....     ......+.+|+.+++.++|+||+++.+.+.+     .
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~-----~   76 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRD-----P   76 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEc-----C
Confidence            5799999999999999999995 468999999875331     2334578889999999999999999987654     2


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      .....++++|++++++|.+.+....  .+++.....++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||
T Consensus        77 ~~~~~~~v~e~~~~~~L~~~~~~~~--~l~~~~~~~~~~~i~~al~~LH~---~~i~H~dl~p~ni~i~~~~~~~l~dfg  151 (264)
T cd06653          77 EEKKLSIFVEYMPGGSIKDQLKAYG--ALTENVTRRYTRQILQGVSYLHS---NMIVHRDIKGANILRDSAGNVKLGDFG  151 (264)
T ss_pred             CCCEEEEEEEeCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEECccc
Confidence            2456889999999999999987654  57888899999999999999999   799999999999999999999999999


Q ss_pred             chhhcccc----cccccccccccccCCCCC
Q 028725          178 LPLLAENA----EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~----~~~~~~~~~~~~~aPE~~  203 (205)
                      +++.....    .......++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  181 (264)
T cd06653         152 ASKRIQTICMSGTGIKSVTGTPYWMSPEVI  181 (264)
T ss_pred             cccccccccccCccccccCCcccccCHhhh
Confidence            99765432    112234688899999975

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.96  E-value=8.7e-28  Score=185.08  Aligned_cols=167  Identities=23%  Similarity=0.376  Sum_probs=137.7

Q ss_pred             CCcceeeccCcceEEEEEEe-----cCCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           26 FDTSAFMGEGSKGQMYRGRL-----KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~-----~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      |+..+.||+|+||.||++..     .++..+|+|.++... ......+.+|+.+++.++||||+++.+.+..     ...
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~   80 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSE-----QGG   80 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-----CCC
Confidence            48999999999999988653     247789999997543 2345678889999999999999999987654     224


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...+++|||+++++|.+++...   .+++..++.++.|++.||.|||+   .+++|+||||+||++++++.++|+|||++
T Consensus        81 ~~~~lv~e~~~~~~l~~~~~~~---~l~~~~~~~i~~~l~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~~  154 (283)
T cd05080          81 KGLQLIMEYVPLGSLRDYLPKH---KLNLAQLLLFAQQICEGMAYLHS---QHYIHRDLAARNVLLDNDRLVKIGDFGLA  154 (283)
T ss_pred             ceEEEEecCCCCCCHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHHH---CCeeccccChheEEEcCCCcEEEeecccc
Confidence            5689999999999999998754   58999999999999999999999   79999999999999999999999999999


Q ss_pred             hhccccccc----ccccccccccCCCCC
Q 028725          180 LLAENAEKV----GHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~----~~~~~~~~~~aPE~~  203 (205)
                      +........    ....++..|+|||..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~PE~~  182 (283)
T cd05080         155 KAVPEGHEYYRVREDGDSPVFWYAVECL  182 (283)
T ss_pred             cccCCcchhhccCCCCCCCceeeCHhHh
Confidence            866543321    122455679999964

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=6.8e-28  Score=184.79  Aligned_cols=167  Identities=19%  Similarity=0.314  Sum_probs=145.1

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ++|++.+.||.|++|.||+|... ++..+++|.+.... ......+.+|+.+++.++|+|++++.+.+.+       ...
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~   73 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLK-------GSK   73 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEE-------CCe
Confidence            47889999999999999999954 58899999997653 3445678889999999999999999998766       568


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++|++++++|.+++...   .+++..++.++.|++.++.|||+   .+++|+||+|+||++++++.++|+|||+++.
T Consensus        74 ~~~v~e~~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~  147 (274)
T cd06609          74 LWIIMEYCGGGSCLDLLKPG---KLDETYIAFILREVLLGLEYLHE---EGKIHRDIKAANILLSEEGDVKLADFGVSGQ  147 (274)
T ss_pred             EEEEEEeeCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEEccccccee
Confidence            99999999999999998764   68899999999999999999999   7999999999999999999999999999977


Q ss_pred             cccc-cccccccccccccCCCCC
Q 028725          182 AENA-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~-~~~~~~~~~~~~~aPE~~  203 (205)
                      .... .......++..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~y~~PE~~  170 (274)
T cd06609         148 LTSTMSKRNTFVGTPFWMAPEVI  170 (274)
T ss_pred             ecccccccccccCCccccChhhh
Confidence            7654 233445788899999974

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=5e-28  Score=194.67  Aligned_cols=163  Identities=12%  Similarity=0.202  Sum_probs=136.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEec---CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK---NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ..+|.+.+.||+|+||.||++...   +++.|++|.+...     ....+|+.+++.++||||+++++.+..       .
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~h~~iv~~~~~~~~-------~  158 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKTISHRAIINLIHAYRW-------K  158 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHhcCCCCccceeeeEee-------C
Confidence            356999999999999999999743   3678899988643     234579999999999999999988765       5


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...+++||++. ++|.+++...  ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||++
T Consensus       159 ~~~~lv~e~~~-~~l~~~l~~~--~~l~~~~~~~i~~ql~~aL~~LH~---~givHrDlkp~Nill~~~~~~~l~DfG~a  232 (392)
T PHA03207        159 STVCMVMPKYK-CDLFTYVDRS--GPLPLEQAITIQRRLLEALAYLHG---RGIIHRDVKTENIFLDEPENAVLGDFGAA  232 (392)
T ss_pred             CEEEEEehhcC-CCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEcCCCCEEEccCccc
Confidence            67899999995 5888888543  378999999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccc---cccccccccccCCCCC
Q 028725          180 LLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      ........   .....||..|+|||..
T Consensus       233 ~~~~~~~~~~~~~~~~gt~~y~aPE~~  259 (392)
T PHA03207        233 CKLDAHPDTPQCYGWSGTLETNSPELL  259 (392)
T ss_pred             cccCcccccccccccccccCccCHhHh
Confidence            76554322   2335799999999975

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.96  E-value=1e-27  Score=182.73  Aligned_cols=170  Identities=16%  Similarity=0.293  Sum_probs=145.4

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ++|++.+.||.|++|+||+|... ++..+++|++.... ......+.+|+..++.++|+|++++.+.+..       .+.
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~   73 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVV-------GDE   73 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEee-------CCE
Confidence            47999999999999999999954 58899999997543 3356778999999999999999999988765       678


Q ss_pred             EEEEEeecCCCcHHHhhccCCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAW-QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      .++++|++++++|.+++..... ..+++.....++.|++.++.+||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        74 ~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~---~~i~h~~l~p~ni~~~~~~~~~l~df~~~~  150 (267)
T cd06610          74 LWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHS---NGQIHRDIKAGNILLGEDGSVKIADFGVSA  150 (267)
T ss_pred             EEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHhEEEcCCCCEEEcccchHH
Confidence            9999999999999999875432 468899999999999999999999   799999999999999999999999999997


Q ss_pred             hccccccc-----ccccccccccCCCCC
Q 028725          181 LAENAEKV-----GHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~-----~~~~~~~~~~aPE~~  203 (205)
                      ........     ....++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~y~~Pe~~  178 (267)
T cd06610         151 SLADGGDRTRKVRKTFVGTPCWMAPEVM  178 (267)
T ss_pred             HhccCccccccccccccCChhhcChHHH
Confidence            66654322     334688899999974

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.96  E-value=1.3e-27  Score=182.02  Aligned_cols=167  Identities=18%  Similarity=0.389  Sum_probs=143.4

Q ss_pred             CCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCc--CHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSH--STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +|++.+.||+|++|.||++.. .+++.+++|.++.....  ....+.+|+.+++.++|+||+++.+.+..       .+.
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-------~~~   73 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVH-------REK   73 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEec-------CCE
Confidence            588999999999999999995 46889999999766443  56778899999999999999999998765       678


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++||+++++|.+++....  .+++.....++.+++.|+.|||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        74 ~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~~i~~~l~~lh~---~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~  148 (264)
T cd06626          74 VYIFMEYCSGGTLEELLEHGR--ILDEHVIRVYTLQLLEGLAYLHS---HGIVHRDIKPANIFLDHNGVIKLGDFGCAVK  148 (264)
T ss_pred             EEEEEecCCCCcHHHHHhhcC--CCChHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEcccccccc
Confidence            999999999999999987653  57888899999999999999999   7999999999999999999999999999876


Q ss_pred             ccccccc-----ccccccccccCCCCC
Q 028725          182 AENAEKV-----GHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~~-----~~~~~~~~~~aPE~~  203 (205)
                      .......     ....++..|+|||+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~PE~~  175 (264)
T cd06626         149 LKNNTTTMGEEVQSLAGTPAYMAPEVI  175 (264)
T ss_pred             cCCCCCcccccccCCcCCcCccChhhc
Confidence            6543221     124678899999974

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.96  E-value=1.4e-27  Score=182.06  Aligned_cols=170  Identities=14%  Similarity=0.283  Sum_probs=144.0

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|++.+.||+|++|.||+|... +|+.+++|.++...   ......+.+|+.++++++|+|++++.+.+..       .
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~-------~   74 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIE-------N   74 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeec-------C
Confidence            68999999999999999999965 78999999886432   2335678899999999999999999998876       5


Q ss_pred             CeEEEEEeecCCCcHHHhhccC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725          100 SRIFLIFEYVPNGTLRSWISGH--AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      +..++++||+++++|.+++...  ....+++..+..++.+++.+|.|||+   .+++|+||+|+||+++.++.++|+|||
T Consensus        75 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~nil~~~~~~~~l~d~~  151 (267)
T cd08224          75 NELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHS---KRIMHRDIKPANVFITATGVVKLGDLG  151 (267)
T ss_pred             CeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHh---CCEecCCcChhhEEECCCCcEEEeccc
Confidence            6789999999999999988632  22458899999999999999999999   799999999999999999999999999


Q ss_pred             chhhccccc-ccccccccccccCCCCC
Q 028725          178 LPLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ++....... ......++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~y~apE~~  178 (267)
T cd08224         152 LGRFFSSKTTAAHSLVGTPYYMSPERI  178 (267)
T ss_pred             eeeeccCCCcccceecCCccccCHHHh
Confidence            987654432 22334688889999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.96  E-value=6.8e-28  Score=182.78  Aligned_cols=168  Identities=20%  Similarity=0.359  Sum_probs=145.9

Q ss_pred             hcCCCcceeeccCcceEEEEEEecC-CcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~-~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      .++|+..+.||.|++|.||+|.... ++.+++|.+.....  .+.+.+|+++++.++|+|++++.+.+..       ...
T Consensus         2 ~~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~-------~~~   72 (256)
T cd06612           2 EEVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYFK-------NTD   72 (256)
T ss_pred             cccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeeec-------CCc
Confidence            4689999999999999999999654 78999999865432  6788999999999999999999998876       568


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++|++++++|.+++.... ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        73 ~~l~~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~l~~~l~~lh~---~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~  148 (256)
T cd06612          73 LWIVMEYCGAGSVSDIMKITN-KTLTEEEIAAILYQTLKGLEYLHS---NKKIHRDIKAGNILLNEEGQAKLADFGVSGQ  148 (256)
T ss_pred             EEEEEecCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEECCCCcEEEcccccchh
Confidence            999999999999999986533 468999999999999999999999   7999999999999999999999999999987


Q ss_pred             ccccc-ccccccccccccCCCCC
Q 028725          182 AENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ..... ......++..|+|||+.
T Consensus       149 ~~~~~~~~~~~~~~~~y~~PE~~  171 (256)
T cd06612         149 LTDTMAKRNTVIGTPFWMAPEVI  171 (256)
T ss_pred             cccCccccccccCCccccCHHHH
Confidence            66543 33445688899999964

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.96  E-value=8.6e-28  Score=182.78  Aligned_cols=171  Identities=15%  Similarity=0.280  Sum_probs=143.6

Q ss_pred             CCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +|++.+.||.|++|.||++.. .++..+++|.+....  ....+.+.+|+..++.++|+|++++.+.+..     .....
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~   75 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIID-----RSNQT   75 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeec-----CCCCE
Confidence            588899999999999999994 468899999986543  2335567889999999999999999887654     23567


Q ss_pred             EEEEEeecCCCcHHHhhccC--CCCCCCHHHHHHHHHHHHHHHHHhh-----cCCCCceeecCCccccEEeCCCCceeEc
Q 028725          102 IFLIFEYVPNGTLRSWISGH--AWQSLTWTQRISAAIGVARGIQFLH-----TGIVPGVFSNNLKITDILLDQNLVAKIS  174 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lh-----~~~~~~i~h~dlkp~nilv~~~~~~~l~  174 (205)
                      .++++||+++++|.+++...  ....+++..++.++.|++.+|.|||     +   .+++|+||+|+||++++++.++|+
T Consensus        76 ~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~---~~i~h~dl~p~nili~~~~~~kl~  152 (265)
T cd08217          76 LYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPG---NTVLHRDLKPANIFLDANNNVKLG  152 (265)
T ss_pred             EEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCcccc---CcceecCCCHHHEEEecCCCEEEe
Confidence            89999999999999998643  2346899999999999999999999     6   799999999999999999999999


Q ss_pred             CCCchhhcccccc-cccccccccccCCCCC
Q 028725          175 SYNLPLLAENAEK-VGHVTPYSGSINPTNS  203 (205)
Q Consensus       175 Dfg~a~~~~~~~~-~~~~~~~~~~~aPE~~  203 (205)
                      |||++........ .....++..|+|||..
T Consensus       153 d~g~~~~~~~~~~~~~~~~~~~~~~~pE~~  182 (265)
T cd08217         153 DFGLAKILGHDSSFAKTYVGTPYYMSPEQL  182 (265)
T ss_pred             cccccccccCCcccccccccCCCccChhhh
Confidence            9999987765443 3345788999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.96  E-value=1e-27  Score=183.56  Aligned_cols=174  Identities=16%  Similarity=0.284  Sum_probs=137.1

Q ss_pred             CCcceeeccCcceEEEEEEecC-Cc--EEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           26 FDTSAFMGEGSKGQMYRGRLKN-GT--FIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~~~-~~--~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      +.+++.||+|+||.||+|.... +.  .+|+|.++...  ......+.+|+.+++.++|+||+++.+.+...... ....
T Consensus         1 ~~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~-~~~~   79 (272)
T cd05075           1 LALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVES-EGYP   79 (272)
T ss_pred             CccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcc-cCCC
Confidence            4577899999999999999653 33  68999887542  33456788899999999999999999887642211 1233


Q ss_pred             eEEEEEeecCCCcHHHhhccC----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725          101 RIFLIFEYVPNGTLRSWISGH----AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                      ..++++||+.+++|.+++...    ....+++.....++.|++.||.|||+   .+++||||||+||++++++.++|+||
T Consensus        80 ~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Df  156 (272)
T cd05075          80 SPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSS---KSFIHRDLAARNCMLNENMNVCVADF  156 (272)
T ss_pred             CcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchhheEEcCCCCEEECCC
Confidence            578999999999999987421    22357899999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhcccccc---cccccccccccCCCCC
Q 028725          177 NLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      |+++.......   ......+..|+|||..
T Consensus       157 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  186 (272)
T cd05075         157 GLSKKIYNGDYYRQGRIAKMPVKWIAIESL  186 (272)
T ss_pred             CcccccCcccceecCCcccCCcccCCHHHc
Confidence            99987654322   1223456679999975

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.96  E-value=1.1e-27  Score=181.85  Aligned_cols=164  Identities=27%  Similarity=0.473  Sum_probs=140.3

Q ss_pred             eeeccCcceEEEEEEecC----CcEEEEEEecccCCc-CHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRLKN----GTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~~----~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||+|+||.||+|....    +..+++|.+...... ....+.+|+..++.++|+|++++.+++..       ....++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-------~~~~~l   73 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTE-------EEPLYL   73 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecC-------CCceEE
Confidence            468999999999999643    778999999765433 36788899999999999999999998865       567999


Q ss_pred             EEeecCCCcHHHhhccCC-------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725          105 IFEYVPNGTLRSWISGHA-------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~-------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      ++||+++++|.+++....       ...+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||
T Consensus        74 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~di~p~nili~~~~~~~l~dfg  150 (262)
T cd00192          74 VLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLAS---KKFVHRDLAARNCLVGEDLVVKISDFG  150 (262)
T ss_pred             EEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHc---CCcccCccCcceEEECCCCcEEEcccc
Confidence            999999999999988651       2478999999999999999999999   799999999999999999999999999


Q ss_pred             chhhccccc---ccccccccccccCCCCC
Q 028725          178 LPLLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      .+.......   ......++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  179 (262)
T cd00192         151 LSRDVYDDDYYRKKTGGKLPIRWMAPESL  179 (262)
T ss_pred             cccccccccccccccCCCcCccccCHHHh
Confidence            998776542   23334678899999964

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.96  E-value=4.7e-28  Score=187.10  Aligned_cols=173  Identities=16%  Similarity=0.289  Sum_probs=138.2

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeec
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECY   93 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   93 (205)
                      ....+|++.+.||+|+||.||+|..+      .+..|++|.++... ......+.+|+.+++.++||||+++.+.+..  
T Consensus         3 ~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~--   80 (288)
T cd05061           3 VSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSK--   80 (288)
T ss_pred             ccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC--
Confidence            45678999999999999999999743      24579999886443 2233457789999999999999999988755  


Q ss_pred             ccCCCCCeEEEEEeecCCCcHHHhhccCC--------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEe
Q 028725           94 FDDSSVSRIFLIFEYVPNGTLRSWISGHA--------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL  165 (205)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv  165 (205)
                           ....+++|||+++++|.+++....        ....+...+..++.|++.||.|||+   .+++||||||+||++
T Consensus        81 -----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dikp~nili  152 (288)
T cd05061          81 -----GQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNA---KKFVHRDLAARNCMV  152 (288)
T ss_pred             -----CCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCCcCCCCChheEEE
Confidence                 557899999999999999986421        1234667788899999999999999   799999999999999


Q ss_pred             CCCCceeEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          166 DQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       166 ~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      ++++.++|+|||+++.......   .....++..|+|||..
T Consensus       153 ~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~  193 (288)
T cd05061         153 AHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESL  193 (288)
T ss_pred             cCCCcEEECcCCccccccccccccccCCCcccccccCHHHh
Confidence            9999999999999875543221   1222446779999974

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.96  E-value=1.1e-27  Score=184.79  Aligned_cols=168  Identities=19%  Similarity=0.310  Sum_probs=142.6

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ++|++.+.||+|++|.||+|... +++.|++|.++...  ......+.+|+++++.++|+||+++.+.+..       .+
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~   73 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRR-------KG   73 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEE-------CC
Confidence            47899999999999999999965 58899999987542  3345678899999999999999999998876       66


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++++||++++.+..+....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        74 ~~~iv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~  148 (288)
T cd07833          74 RLYLVFEYVERTLLELLEASP--GGLPPDAVRSYIWQLLQAIAYCHS---HNIIHRDIKPENILVSESGVLKLCDFGFAR  148 (288)
T ss_pred             EEEEEEecCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCCEEEEeeeccc
Confidence            899999999987666655443  358899999999999999999999   799999999999999999999999999998


Q ss_pred             hccccc--ccccccccccccCCCCC
Q 028725          181 LAENAE--KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~--~~~~~~~~~~~~aPE~~  203 (205)
                      ......  ......++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~PE~~  173 (288)
T cd07833         149 ALRARPASPLTDYVATRWYRAPELL  173 (288)
T ss_pred             ccCCCccccccCcccccCCcCCchh
Confidence            766554  33345778899999964

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.95  E-value=8.1e-28  Score=185.06  Aligned_cols=168  Identities=19%  Similarity=0.330  Sum_probs=135.7

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCc----EEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGT----FIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~----~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .+|++.+.||+|+||.||+|.+. ++.    .+++|.+.... ......+..|+..++.+.||||+++.+++.       
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-------   79 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICP-------   79 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEEC-------
Confidence            57888999999999999999953 344    46777775332 223456777888899999999999998764       


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ....++++|++++++|.+++.... ..+++..+..++.|++.||.|||+   .+++|+||||+||++++++.++|+|||
T Consensus        80 -~~~~~~i~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~---~~iiH~dlkp~nili~~~~~~kl~Dfg  154 (279)
T cd05111          80 -GASLQLVTQLSPLGSLLDHVRQHR-DSLDPQRLLNWCVQIAKGMYYLEE---HRMVHRNLAARNILLKSDSIVQIADFG  154 (279)
T ss_pred             -CCccEEEEEeCCCCcHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHH---CCEeccccCcceEEEcCCCcEEEcCCc
Confidence             235788999999999999997543 468899999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccc---cccccccccccCCCCC
Q 028725          178 LPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      +++.......   .....++..|+|||..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~y~~pE~~  183 (279)
T cd05111         155 VADLLYPDDKKYFYSEHKTPIKWMALESI  183 (279)
T ss_pred             cceeccCCCcccccCCCCCcccccCHHHh
Confidence            9976543321   1223566789999974

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.95  E-value=8.2e-28  Score=186.03  Aligned_cols=171  Identities=22%  Similarity=0.401  Sum_probs=141.3

Q ss_pred             hcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      ..+|.+.+.||+|+||.||+|...      ++..+++|.++.......+.+.+|+..++.++|+||+++.+.+..     
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----   78 (291)
T cd05094           4 RRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGD-----   78 (291)
T ss_pred             hHHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEcc-----
Confidence            356888999999999999999842      245688888875554555678899999999999999999998865     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCcccc
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHA--------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITD  162 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~--------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~n  162 (205)
                        ....+++|||+++++|.+++....              ...+++..++.++.|++.++.|||+   .+++||||||+|
T Consensus        79 --~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---~~i~H~dlkp~N  153 (291)
T cd05094          79 --GDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLAS---QHFVHRDLATRN  153 (291)
T ss_pred             --CCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccCcce
Confidence              567899999999999999986432              1347889999999999999999999   799999999999


Q ss_pred             EEeCCCCceeEcCCCchhhccccc---ccccccccccccCCCCC
Q 028725          163 ILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       163 ilv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      |++++++.++|+|||++.......   ......++..|+|||+.
T Consensus       154 il~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~  197 (291)
T cd05094         154 CLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESI  197 (291)
T ss_pred             EEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecChHHh
Confidence            999999999999999997554432   12234567889999963

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.95  E-value=4.6e-28  Score=185.89  Aligned_cols=172  Identities=19%  Similarity=0.310  Sum_probs=141.3

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecC------CcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecc
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKN------GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~------~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   94 (205)
                      ..++|.+.+.||+|+||.||+|....      +..+++|.+.... ......+.+|+.+++.++||||+++.+.+..   
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~---   80 (277)
T cd05032           4 PREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVST---   80 (277)
T ss_pred             chHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcC---
Confidence            45789999999999999999998542      3689999986442 2334567889999999999999999998765   


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCC--------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHA--------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD  166 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~--------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~  166 (205)
                          ....++++||+++++|.+++....        ...+++..++.++.|++.||.|||+   .+++|+||+|+||+++
T Consensus        81 ----~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~di~p~nill~  153 (277)
T cd05032          81 ----GQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAA---KKFVHRDLAARNCMVA  153 (277)
T ss_pred             ----CCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHh---CCccccccChheEEEc
Confidence                567899999999999999986432        1236788899999999999999999   7999999999999999


Q ss_pred             CCCceeEcCCCchhhccccc---ccccccccccccCCCCC
Q 028725          167 QNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       167 ~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      +++.++|+|||+++......   ......++..|+|||..
T Consensus       154 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  193 (277)
T cd05032         154 EDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESL  193 (277)
T ss_pred             CCCCEEECCcccchhhccCcccccCCCCCccccccCHHHH
Confidence            99999999999997655432   12233567889999964

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.95  E-value=5.3e-28  Score=187.10  Aligned_cols=176  Identities=21%  Similarity=0.393  Sum_probs=142.7

Q ss_pred             HHHHHhcCCCcceeeccCcceEEEEEEecC------CcEEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCcccccccce
Q 028725           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLKN------GTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHC   89 (205)
Q Consensus        18 ~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~------~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~   89 (205)
                      ++....++|++.+.||+|+||.||++....      ...+++|.+.... ......+.+|+.++..+ +|+||+++.+.+
T Consensus         6 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~   85 (293)
T cd05053           6 EWELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVC   85 (293)
T ss_pred             ccccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            344556789999999999999999998542      3578999887542 23345678899999999 799999999987


Q ss_pred             eeecccCCCCCeEEEEEeecCCCcHHHhhccC--------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceee
Q 028725           90 FECYFDDSSVSRIFLIFEYVPNGTLRSWISGH--------------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFS  155 (205)
Q Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--------------~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h  155 (205)
                      ..       .+..+++|||+++++|.+++...              ....+++..++.++.|++.||.|||+   .+++|
T Consensus        86 ~~-------~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivH  155 (293)
T cd05053          86 TQ-------EGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLAS---KKCIH  155 (293)
T ss_pred             cC-------CCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHH---CCccc
Confidence            65       56789999999999999998632              23468889999999999999999999   79999


Q ss_pred             cCCccccEEeCCCCceeEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          156 NNLKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       156 ~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      +||||+||++++++.++|+|||+++.......   .....++..|+|||..
T Consensus       156 ~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  206 (293)
T cd05053         156 RDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEAL  206 (293)
T ss_pred             cccceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHh
Confidence            99999999999999999999999986654321   1112345679999963

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.95  E-value=5.1e-28  Score=191.39  Aligned_cols=173  Identities=21%  Similarity=0.362  Sum_probs=137.8

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe------cCCcEEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCcccccccceeeec
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL------KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFECY   93 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~------~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~   93 (205)
                      ..++|++.+.||+|+||.||+|..      .+++.||+|+++... ......+.+|+.++..+ +||||+++.+.+..  
T Consensus         5 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~--   82 (343)
T cd05103           5 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTK--   82 (343)
T ss_pred             chhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeec--
Confidence            346899999999999999999973      246789999997543 23345678899999999 68999999997754  


Q ss_pred             ccCCCCCeEEEEEeecCCCcHHHhhccCCC--------------------------------------------------
Q 028725           94 FDDSSVSRIFLIFEYVPNGTLRSWISGHAW--------------------------------------------------  123 (205)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~--------------------------------------------------  123 (205)
                          .+...+++|||+++++|.+++.....                                                  
T Consensus        83 ----~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (343)
T cd05103          83 ----PGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSL  158 (343)
T ss_pred             ----CCCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCcc
Confidence                14567899999999999998853210                                                  


Q ss_pred             ---------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcccccc-
Q 028725          124 ---------------QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK-  187 (205)
Q Consensus       124 ---------------~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~-  187 (205)
                                     ..+++.....++.|++.||.|||+   .+++||||||+||++++++.++|+|||++........ 
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~  235 (343)
T cd05103         159 SDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDY  235 (343)
T ss_pred             ccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCccCeEEEcCCCcEEEEecccccccccCcch
Confidence                           135677788899999999999999   7999999999999999999999999999976543221 


Q ss_pred             --cccccccccccCCCCC
Q 028725          188 --VGHVTPYSGSINPTNS  203 (205)
Q Consensus       188 --~~~~~~~~~~~aPE~~  203 (205)
                        .....++..|+|||..
T Consensus       236 ~~~~~~~~~~~y~aPE~~  253 (343)
T cd05103         236 VRKGDARLPLKWMAPETI  253 (343)
T ss_pred             hhcCCCCCCcceECcHHh
Confidence              1122445679999964

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.95  E-value=1.2e-27  Score=185.76  Aligned_cols=170  Identities=26%  Similarity=0.392  Sum_probs=136.4

Q ss_pred             cCCCcceeeccCcceEEEEEEecC-Cc--EEEEEEeccc-CCcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLKN-GT--FIAIRCLKMK-KSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~~-~~--~vaiK~~~~~-~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ++|++.+.||+|+||.||+|..++ +.  .+++|.++.. .....+.+.+|+.++.++ +||||+++.+.+..       
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~-------   74 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACEN-------   74 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEcc-------
Confidence            578999999999999999998643 33  4678877632 223456788899999999 79999999998765       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEE
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHA--------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL  164 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~--------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nil  164 (205)
                      .+..++++||+++++|.+++....              ...+++..++.++.|++.||.|||+   .+++||||||+||+
T Consensus        75 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~---~~ivH~dlkp~Nil  151 (297)
T cd05089          75 RGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSE---KQFIHRDLAARNVL  151 (297)
T ss_pred             CCcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCcCCcceEE
Confidence            567899999999999999986432              1247888999999999999999999   79999999999999


Q ss_pred             eCCCCceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          165 LDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       165 v~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +++++.++|+|||++..............+..|+|||..
T Consensus       152 l~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~  190 (297)
T cd05089         152 VGENLASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESL  190 (297)
T ss_pred             ECCCCeEEECCcCCCccccceeccCCCCcCccccCchhh
Confidence            999999999999998654332222222335679999974

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.95  E-value=1.1e-27  Score=184.47  Aligned_cols=167  Identities=16%  Similarity=0.302  Sum_probs=139.1

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +|++.+.||+|++|.||+|... +|+.+++|.++...  ......+.+|+.+++.++|||++++.+.+.+       ...
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~-------~~~   73 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHS-------DKK   73 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhcc-------CCc
Confidence            5888999999999999999964 68899999997542  2234567789999999999999999998865       567


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++||+.+ +|.+++.... ..+++..++.++.|+++||.|||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        74 ~~lv~e~~~~-~l~~~~~~~~-~~~~~~~~~~~~~qi~~al~~LH~---~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~  148 (284)
T cd07839          74 LTLVFEYCDQ-DLKKYFDSCN-GDIDPEIVKSFMFQLLKGLAFCHS---HNVLHRDLKPQNLLINKNGELKLADFGLARA  148 (284)
T ss_pred             eEEEEecCCC-CHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEEcCCCcEEECccchhhc
Confidence            9999999965 7887776433 368999999999999999999999   7999999999999999999999999999976


Q ss_pred             cccccc-cccccccccccCCCCC
Q 028725          182 AENAEK-VGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~-~~~~~~~~~~~aPE~~  203 (205)
                      ...... .....++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~y~aPE~~  171 (284)
T cd07839         149 FGIPVRCYSAEVVTLWYRPPDVL  171 (284)
T ss_pred             cCCCCCCcCCCccccCCcChHHH
Confidence            544322 2234678899999953

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.95  E-value=2.1e-28  Score=170.37  Aligned_cols=167  Identities=18%  Similarity=0.317  Sum_probs=142.4

Q ss_pred             cCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .+|.-.+.||+|.||+||+|+ +.++..||+|.+....  .....+..+|+.+++.++|.||+++.++...       +.
T Consensus         2 ~~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhs-------dk   74 (292)
T KOG0662|consen    2 QKYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHS-------DK   74 (292)
T ss_pred             cchHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhcc-------Cc
Confidence            357778899999999999999 4568899999996653  4456778899999999999999999998865       67


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      .+.+|+|++ ...|..+...-+ +.++.+....++.|+++|+.++|+   +++.|||+||.|.+|..+|..|++|||+++
T Consensus        75 kltlvfe~c-dqdlkkyfdsln-g~~d~~~~rsfmlqllrgl~fchs---hnvlhrdlkpqnllin~ngelkladfglar  149 (292)
T KOG0662|consen   75 KLTLVFEFC-DQDLKKYFDSLN-GDLDPEIVRSFMLQLLRGLGFCHS---HNVLHRDLKPQNLLINRNGELKLADFGLAR  149 (292)
T ss_pred             eeEEeHHHh-hHHHHHHHHhcC-CcCCHHHHHHHHHHHHhhhhhhhh---hhhhhccCCcceEEeccCCcEEecccchhh
Confidence            899999999 459999887654 468888899999999999999999   799999999999999999999999999998


Q ss_pred             hccccccc-ccccccccccCCCC
Q 028725          181 LAENAEKV-GHVTPYSGSINPTN  202 (205)
Q Consensus       181 ~~~~~~~~-~~~~~~~~~~aPE~  202 (205)
                      ...-+-+. ....-|.+|.+|..
T Consensus       150 afgipvrcysaevvtlwyrppdv  172 (292)
T KOG0662|consen  150 AFGIPVRCYSAEVVTLWYRPPDV  172 (292)
T ss_pred             hcCCceEeeeceeeeeeccCcce
Confidence            66654322 33477889999875

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.95  E-value=9.7e-28  Score=183.06  Aligned_cols=160  Identities=19%  Similarity=0.342  Sum_probs=131.6

Q ss_pred             eeeccCcceEEEEEEecC-------------CcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           30 AFMGEGSKGQMYRGRLKN-------------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~~-------------~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      +.||+|+||.||+|...+             ...+++|++..........+.+|+.+++.++||||+++.+++..     
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~-----   75 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVR-----   75 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEec-----
Confidence            468999999999998532             23588888875555555678889999999999999999998865     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc------
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV------  170 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~------  170 (205)
                        ....++++||+++++|..++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.      
T Consensus        76 --~~~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~Nill~~~~~~~~~~~  149 (262)
T cd05077          76 --DVENIMVEEFVEFGPLDLFMHRKS-DVLTTPWKFKVAKQLASALSYLED---KDLVHGNVCTKNILLAREGIDGECGP  149 (262)
T ss_pred             --CCCCEEEEecccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHhhh---CCeECCCCCcccEEEecCCccCCCCc
Confidence              556799999999999998876543 468899999999999999999999   79999999999999986654      


Q ss_pred             -eeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          171 -AKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       171 -~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                       ++++|||++.......   ...++..|+|||..
T Consensus       150 ~~~l~d~g~~~~~~~~~---~~~~~~~y~aPE~~  180 (262)
T cd05077         150 FIKLSDPGIPITVLSRQ---ECVERIPWIAPECV  180 (262)
T ss_pred             eeEeCCCCCCccccCcc---cccccccccChhhh
Confidence             8999999987554322   24677889999964

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.95  E-value=1.1e-27  Score=182.84  Aligned_cols=167  Identities=19%  Similarity=0.335  Sum_probs=140.8

Q ss_pred             CCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCC------cCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           25 NFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS------HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      +|+..+.||+|++|.||++.. .+++.+++|++.....      .....+.+|+..++.++|+||+++.+.+.+      
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------   74 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCE------   74 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceecc------
Confidence            588899999999999999994 5689999999865431      124678889999999999999999998865      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC-ceeEcCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-VAKISSY  176 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~-~~~l~Df  176 (205)
                       .+..++++||+++++|.+++....  .+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++ .++|+||
T Consensus        75 -~~~~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~ql~~al~~LH~---~~i~H~~i~~~nil~~~~~~~~~l~df  148 (268)
T cd06630          75 -DSHFNLFVEWMAGGSVSHLLSKYG--AFKEAVIINYTEQLLRGLSYLHE---NQIIHRDVKGANLLIDSTGQRLRIADF  148 (268)
T ss_pred             -CCeEEEEEeccCCCcHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEEccc
Confidence             568999999999999999987543  68889999999999999999999   7999999999999998765 6999999


Q ss_pred             Cchhhccccc-----ccccccccccccCCCCC
Q 028725          177 NLPLLAENAE-----KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~-----~~~~~~~~~~~~aPE~~  203 (205)
                      |.+.......     ......++..|+|||..
T Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~  180 (268)
T cd06630         149 GAAARLAAKGTGAGEFQGQLLGTIAFMAPEVL  180 (268)
T ss_pred             ccccccccccccCCccccccccccceeCHhHh
Confidence            9997665432     11234678899999964

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.95  E-value=1.9e-27  Score=183.89  Aligned_cols=169  Identities=18%  Similarity=0.269  Sum_probs=138.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|.+.+.||+|+||.||+|.. .+++.+++|++.... ......+.+|+.+++.++|+||+++.+.+..       ..
T Consensus         4 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~-------~~   76 (291)
T cd07870           4 ATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHT-------KE   76 (291)
T ss_pred             cceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEec-------CC
Confidence            57899999999999999999985 468899999997553 2333456789999999999999999998765       56


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++++|++. +++.+.+.... ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||+++
T Consensus        77 ~~~lv~e~~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~  151 (291)
T cd07870          77 TLTFVFEYMH-TDLAQYMIQHP-GGLHPYNVRLFMFQLLRGLAYIHG---QHILHRDLKPQNLLISYLGELKLADFGLAR  151 (291)
T ss_pred             eEEEEEeccc-CCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChHHEEEcCCCcEEEecccccc
Confidence            7899999996 57777665433 356778888899999999999999   799999999999999999999999999987


Q ss_pred             hccccc-ccccccccccccCCCCC
Q 028725          181 LAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ...... ......++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~y~aPE~~  175 (291)
T cd07870         152 AKSIPSQTYSSEVVTLWYRPPDVL  175 (291)
T ss_pred             ccCCCCCCCCCccccccccCCcee
Confidence            544322 22334678899999964

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.95  E-value=6.6e-28  Score=187.65  Aligned_cols=173  Identities=20%  Similarity=0.392  Sum_probs=140.9

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec--------CCcEEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCccccccccee
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK--------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCF   90 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~--------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~   90 (205)
                      ....+|.+.+.||+|+||.||+|...        ++..+++|.+.... ......+.+|+.+++.+ +||||+++.+.+.
T Consensus        12 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~   91 (304)
T cd05101          12 FSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT   91 (304)
T ss_pred             ccHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEe
Confidence            44678999999999999999999742        24578999886442 33456788999999999 8999999999886


Q ss_pred             eecccCCCCCeEEEEEeecCCCcHHHhhccCC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeec
Q 028725           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA--------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSN  156 (205)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~  156 (205)
                      .       ....+++|||+++++|.+++....              ...+++..+..++.|++.||.|||+   .+++|+
T Consensus        92 ~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~---~givH~  161 (304)
T cd05101          92 Q-------DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLAS---QKCIHR  161 (304)
T ss_pred             c-------CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHH---CCeeec
Confidence            5       567899999999999999987532              1347788889999999999999999   799999


Q ss_pred             CCccccEEeCCCCceeEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          157 NLKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       157 dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      ||||+||++++++.++|+|||+++.......   .....++..|+|||..
T Consensus       162 dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  211 (304)
T cd05101         162 DLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEAL  211 (304)
T ss_pred             ccccceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhh
Confidence            9999999999999999999999976654321   1223456789999964

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.95  E-value=1.9e-27  Score=184.27  Aligned_cols=169  Identities=16%  Similarity=0.311  Sum_probs=144.9

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ..+|.+.+.||+|+||.||++.. .++..+++|.+........+.+.+|+.+++.++|||++++.+.+..       .+.
T Consensus        18 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~-------~~~   90 (293)
T cd06647          18 KKKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLV-------GDE   90 (293)
T ss_pred             hhhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeee-------CCc
Confidence            47899999999999999999984 4688999999976655566778899999999999999999998866       567


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++|+||+++++|.+++...   .+++..+..++.|++.+|.|||+   .+++|+||+|+||+++.++.++|+|||++..
T Consensus        91 ~~lv~e~~~~~~L~~~~~~~---~l~~~~~~~i~~~l~~al~~LH~---~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~  164 (293)
T cd06647          91 LWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQ  164 (293)
T ss_pred             EEEEEecCCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHh---CCEeeccCCHHHEEEcCCCCEEEccCcceec
Confidence            89999999999999998753   47788889999999999999999   7999999999999999999999999998865


Q ss_pred             ccccc-ccccccccccccCCCCCC
Q 028725          182 AENAE-KVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       182 ~~~~~-~~~~~~~~~~~~aPE~~~  204 (205)
                      ..... ......++..|+|||...
T Consensus       165 ~~~~~~~~~~~~~~~~y~~PE~~~  188 (293)
T cd06647         165 ITPEQSKRSTMVGTPYWMAPEVVT  188 (293)
T ss_pred             ccccccccccccCChhhcCchhhc
Confidence            54432 223346888899999753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.95  E-value=9.1e-28  Score=185.05  Aligned_cols=168  Identities=21%  Similarity=0.346  Sum_probs=142.1

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ++|++.+.||+|++|.||+|... +++.+++|.+.....  ...+.+.+|+++++.++||||+++.+.+..       ..
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~   73 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRR-------KK   73 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhccc-------CC
Confidence            47899999999999999999965 588999999865432  234567889999999999999999998865       67


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++++||+.+++|..+.....  .+++..+..++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        74 ~~~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~l~~LH~---~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~  148 (286)
T cd07846          74 RLYLVFEFVDHTVLDDLEKYPN--GLDESRVRKYLFQILRGIEFCHS---HNIIHRDIKPENILVSQSGVVKLCDFGFAR  148 (286)
T ss_pred             eEEEEEecCCccHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCcEEEEeeeeee
Confidence            8999999999988888765443  58899999999999999999999   799999999999999999999999999987


Q ss_pred             hccccccc-ccccccccccCCCCC
Q 028725          181 LAENAEKV-GHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~-~~~~~~~~~~aPE~~  203 (205)
                      ........ ....++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~~y~aPE~~  172 (286)
T cd07846         149 TLAAPGEVYTDYVATRWYRAPELL  172 (286)
T ss_pred             eccCCccccCcccceeeccCcHHh
Confidence            65543322 234678899999964

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.95  E-value=5e-28  Score=194.71  Aligned_cols=175  Identities=21%  Similarity=0.362  Sum_probs=140.8

Q ss_pred             HHHHhcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccC-CcCHHHHHHHHHHHhccC-CCccccccccee
Q 028725           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLR-HCHLVSALGHCF   90 (205)
Q Consensus        19 ~~~~~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~   90 (205)
                      +....++|.+++.||+|+||.||+|.+.      +++.||+|+++... ......+.+|+.++..+. ||||+++++.+.
T Consensus        32 ~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~  111 (401)
T cd05107          32 WEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACT  111 (401)
T ss_pred             ceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEc
Confidence            4455577899999999999999999853      24689999997553 223456888999999997 999999999886


Q ss_pred             eecccCCCCCeEEEEEeecCCCcHHHhhccCCC-----------------------------------------------
Q 028725           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAW-----------------------------------------------  123 (205)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-----------------------------------------------  123 (205)
                      .       ....++|+||+++|+|.+++.....                                               
T Consensus       112 ~-------~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (401)
T cd05107         112 K-------GGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKD  184 (401)
T ss_pred             c-------CCCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCc
Confidence            5       5578999999999999998853210                                               


Q ss_pred             -------------------------------------------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCcee
Q 028725          124 -------------------------------------------------QSLTWTQRISAAIGVARGIQFLHTGIVPGVF  154 (205)
Q Consensus       124 -------------------------------------------------~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~  154 (205)
                                                                       ..+++..++.++.|++.||.|||+   .+++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~iv  261 (401)
T cd05107         185 ESADYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLAS---KNCV  261 (401)
T ss_pred             cccCccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcC
Confidence                                                             135666778899999999999999   7999


Q ss_pred             ecCCccccEEeCCCCceeEcCCCchhhccccc---ccccccccccccCCCCC
Q 028725          155 SNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       155 h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      ||||||+||++++++.++|+|||+++......   ......++..|+|||..
T Consensus       262 Hrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~  313 (401)
T cd05107         262 HRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESI  313 (401)
T ss_pred             cccCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHh
Confidence            99999999999999999999999997654322   11223567789999964

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.95  E-value=1.8e-27  Score=183.94  Aligned_cols=169  Identities=18%  Similarity=0.336  Sum_probs=140.3

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|++.+.||+|++|.||+|... +++.|++|.+..... .....+.+|+.+++.++|+||+++.+++.+       ..
T Consensus         4 ~~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-------~~   76 (291)
T cd07844           4 LETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHT-------KK   76 (291)
T ss_pred             ccceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEec-------CC
Confidence            478999999999999999999954 688999999875432 223456789999999999999999998765       56


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++|+||+.+ +|.+++.... ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||+++
T Consensus        77 ~~~lv~e~~~~-~L~~~~~~~~-~~~~~~~~~~~~~ql~~al~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~  151 (291)
T cd07844          77 TLTLVFEYLDT-DLKQYMDDCG-GGLSMHNVRLFLFQLLRGLAYCHQ---RRVLHRDLKPQNLLISERGELKLADFGLAR  151 (291)
T ss_pred             eEEEEEecCCC-CHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeecccCCHHHEEEcCCCCEEECcccccc
Confidence            89999999975 9999887554 367889999999999999999999   799999999999999999999999999987


Q ss_pred             hcccccc-cccccccccccCCCCC
Q 028725          181 LAENAEK-VGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~~aPE~~  203 (205)
                      ....... .....++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~aPE~~  175 (291)
T cd07844         152 AKSVPSKTYSNEVVTLWYRPPDVL  175 (291)
T ss_pred             ccCCCCccccccccccccCCcHHh
Confidence            5443221 1223567889999964

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.95  E-value=6.7e-28  Score=186.74  Aligned_cols=167  Identities=17%  Similarity=0.328  Sum_probs=141.2

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      ..|.....||+|+||.||++.. .++..+++|.++.......+.+.+|+..++.++|+|++++.+.+..       .+..
T Consensus        22 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~-------~~~~   94 (292)
T cd06658          22 EYLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLV-------GDEL   94 (292)
T ss_pred             HHHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheec-------CCeE
Confidence            4455567799999999999995 4588999999876555556778899999999999999999998765       6789


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      ++++||+++++|.+++...   .+++..+..++.|++.+|.|||+   .+++||||+|+||++++++.++|+|||++...
T Consensus        95 ~lv~e~~~~~~L~~~~~~~---~l~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~  168 (292)
T cd06658          95 WVVMEFLEGGALTDIVTHT---RMNEEQIATVCLSVLRALSYLHN---QGVIHRDIKSDSILLTSDGRIKLSDFGFCAQV  168 (292)
T ss_pred             EEEEeCCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCEEEccCcchhhc
Confidence            9999999999999988543   57888999999999999999999   79999999999999999999999999998755


Q ss_pred             cccc-ccccccccccccCCCCC
Q 028725          183 ENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       183 ~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      .... ......++..|+|||..
T Consensus       169 ~~~~~~~~~~~~~~~y~aPE~~  190 (292)
T cd06658         169 SKEVPKRKSLVGTPYWMAPEVI  190 (292)
T ss_pred             ccccccCceeecCccccCHHHH
Confidence            4322 22335788899999964

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.95  E-value=7.3e-28  Score=187.36  Aligned_cols=174  Identities=24%  Similarity=0.344  Sum_probs=142.3

Q ss_pred             HHHhcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCcccccccceee
Q 028725           20 EEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFE   91 (205)
Q Consensus        20 ~~~~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~   91 (205)
                      ....++|.+.+.||+|+||.||++...      ++..+|+|.++... ....+.+.+|+.+++++ +||||+++.+.+..
T Consensus        31 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~  110 (302)
T cd05055          31 EFPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTI  110 (302)
T ss_pred             cccHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEec
Confidence            344567999999999999999999741      25579999887543 33356788999999999 79999999998765


Q ss_pred             ecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCce
Q 028725           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVA  171 (205)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~  171 (205)
                             .+..++++||+++++|.+++.......+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.+
T Consensus       111 -------~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~  180 (302)
T cd05055         111 -------GGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNVLLTHGKIV  180 (302)
T ss_pred             -------CCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeehhhhccceEEEcCCCeE
Confidence                   5678999999999999999875443458999999999999999999999   799999999999999999999


Q ss_pred             eEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      +++|||+++.......   .....++..|+|||..
T Consensus       181 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  215 (302)
T cd05055         181 KICDFGLARDIMNDSNYVVKGNARLPVKWMAPESI  215 (302)
T ss_pred             EECCCcccccccCCCceeecCCCCcccccCCHhhh
Confidence            9999999975543321   1123456789999963

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.95  E-value=7.8e-28  Score=185.49  Aligned_cols=169  Identities=16%  Similarity=0.280  Sum_probs=143.9

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|++.+.||+|++|.||++.. .+++.+++|++.... ......+.+|+++++.++||||+++.+.+..       .+
T Consensus         4 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-------~~   76 (284)
T cd06620           4 NEDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLN-------EN   76 (284)
T ss_pred             HHHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEec-------CC
Confidence            36789999999999999999995 468899999886543 3345678899999999999999999998876       57


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++++||+++++|.+++....  .+++.....++.+++.+|.|||+.  .+++|+||+|+||++++++.++|+|||++.
T Consensus        77 ~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~l~~LH~~--~~i~H~dl~p~nil~~~~~~~~l~d~gl~~  152 (284)
T cd06620          77 NICMCMEFMDCGSLDRIYKKGG--PIPVEILGKIAVAVVEGLTYLYNV--HRIMHRDIKPSNILVNSRGQIKLCDFGVSG  152 (284)
T ss_pred             EEEEEEecCCCCCHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHh--cCeeccCCCHHHEEECCCCcEEEccCCccc
Confidence            8999999999999999887643  688999999999999999999963  589999999999999999999999999987


Q ss_pred             hcccccccccccccccccCCCCC
Q 028725          181 LAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ...... .....++..|+|||+.
T Consensus       153 ~~~~~~-~~~~~~~~~~~aPE~~  174 (284)
T cd06620         153 ELINSI-ADTFVGTSTYMSPERI  174 (284)
T ss_pred             chhhhc-cCccccCcccCCHHHH
Confidence            554322 2335789999999974

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.95  E-value=8.5e-28  Score=186.14  Aligned_cols=171  Identities=19%  Similarity=0.364  Sum_probs=140.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEecC-----------------CcEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKN-----------------GTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVS   84 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~-----------------~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~   84 (205)
                      ..+|++.+.||+|+||.||+|....                 +..+++|.+..... .....+.+|+++++.++|||+++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~   83 (296)
T cd05051           4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIAR   83 (296)
T ss_pred             hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeE
Confidence            4689999999999999999988532                 24588999875532 34567888999999999999999


Q ss_pred             cccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCC---------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceee
Q 028725           85 ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA---------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFS  155 (205)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~---------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h  155 (205)
                      +.+.+..       ....++++|++++++|.+++....         ...+++..++.++.|++.||.|||+   .+++|
T Consensus        84 ~~~~~~~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~---~~i~H  153 (296)
T cd05051          84 LLGVCTV-------DPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLES---LNFVH  153 (296)
T ss_pred             EEEEEec-------CCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHH---cCccc
Confidence            9998865       467899999999999999986432         1257899999999999999999999   79999


Q ss_pred             cCCccccEEeCCCCceeEcCCCchhhccccc---ccccccccccccCCCCC
Q 028725          156 NNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       156 ~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      +||||+||++++++.++|+|||+++......   ......++..|+|||..
T Consensus       154 ~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  204 (296)
T cd05051         154 RDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESV  204 (296)
T ss_pred             cccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHh
Confidence            9999999999999999999999987654332   12233556789999963

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.95  E-value=2e-27  Score=183.70  Aligned_cols=168  Identities=18%  Similarity=0.293  Sum_probs=140.4

Q ss_pred             CCCcceeeccCcceEEEEEEec----CCcEEEEEEecccC----CcCHHHHHHHHHHHhcc-CCCcccccccceeeeccc
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK----SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFD   95 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~----~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~   95 (205)
                      +|++.+.||+|+||.||.+...    +|..|++|++....    ....+.+.+|+.++..+ +|++|+++.+.+..    
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~----   76 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT----   76 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeec----
Confidence            5888999999999999999853    58899999997532    22345677899999999 58999999877654    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                         +...++++||+++++|.+++....  .+++..+..++.|++.+|.|||+   .+++||||+|+||++++++.++|+|
T Consensus        77 ---~~~~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~al~~lH~---~~i~H~dl~p~nil~~~~~~~kl~d  148 (290)
T cd05613          77 ---DTKLHLILDYINGGELFTHLSQRE--RFKEQEVQIYSGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVLTD  148 (290)
T ss_pred             ---CCeEEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeEECCCCCEEEee
Confidence               567899999999999999987653  67888899999999999999999   7999999999999999999999999


Q ss_pred             CCchhhccccc--ccccccccccccCCCCCC
Q 028725          176 YNLPLLAENAE--KVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       176 fg~a~~~~~~~--~~~~~~~~~~~~aPE~~~  204 (205)
                      ||++.......  ......++..|+|||...
T Consensus       149 fg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  179 (290)
T cd05613         149 FGLSKEFHEDEVERAYSFCGTIEYMAPDIVR  179 (290)
T ss_pred             CccceecccccccccccccCCcccCChhhcc
Confidence            99997654432  222346888999999753

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.95  E-value=1.4e-27  Score=180.60  Aligned_cols=163  Identities=21%  Similarity=0.408  Sum_probs=134.9

Q ss_pred             eeeccCcceEEEEEEecCCcEEEEEEecccCCc-CHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEEee
Q 028725           30 AFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEY  108 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~  108 (205)
                      +.||+|+||.||+|...++..+++|.+...... ....+.+|+.+++.++||||+++.+.+..       ....+++|||
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~~~lv~e~   73 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQ-------RQPIYIVMEL   73 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEec-------CCccEEEEEC
Confidence            368999999999999777889999998754322 23467889999999999999999998865       5678999999


Q ss_pred             cCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccccccc
Q 028725          109 VPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKV  188 (205)
Q Consensus       109 ~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~~  188 (205)
                      +++++|.+++.... ..+++..+..++.+++.+|.|+|+   .+++|+||+|+||++++++.++|+|||++.........
T Consensus        74 ~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~  149 (250)
T cd05085          74 VPGGDFLSFLRKKK-DELKTKQLVKFALDAAAGMAYLES---KNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYS  149 (250)
T ss_pred             CCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccChheEEEcCCCeEEECCCccceeccccccc
Confidence            99999999886543 357899999999999999999999   79999999999999999999999999998755433211


Q ss_pred             --ccccccccccCCCCC
Q 028725          189 --GHVTPYSGSINPTNS  203 (205)
Q Consensus       189 --~~~~~~~~~~aPE~~  203 (205)
                        ....++..|+|||..
T Consensus       150 ~~~~~~~~~~y~aPE~~  166 (250)
T cd05085         150 SSGLKQIPIKWTAPEAL  166 (250)
T ss_pred             cCCCCCCcccccCHHHh
Confidence              112445679999964

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.95  E-value=1.7e-27  Score=185.43  Aligned_cols=168  Identities=15%  Similarity=0.241  Sum_probs=139.9

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|++.+.||+|+||.||++... +++.|++|.+....   ......+.+|+.+++.++||||+++++.+..       +
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-------~   73 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFET-------K   73 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEec-------C
Confidence            47899999999999999999964 57899999986543   2334567789999999999999999987755       5


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +..++++|++++++|.+++....  .+++.....++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++
T Consensus        74 ~~~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~NIll~~~~~~~l~dfg~~  148 (305)
T cd05609          74 RHLCMVMEYVEGGDCATLLKNIG--ALPVDMARMYFAETVLALEYLHN---YGIVHRDLKPDNLLITSMGHIKLTDFGLS  148 (305)
T ss_pred             CEEEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCchHHEEECCCCCEEEeeCCCc
Confidence            68899999999999999997654  68889999999999999999999   79999999999999999999999999998


Q ss_pred             hhccccc----------------ccccccccccccCCCCC
Q 028725          180 LLAENAE----------------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~----------------~~~~~~~~~~~~aPE~~  203 (205)
                      +......                ......++..|+|||+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  188 (305)
T cd05609         149 KIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVI  188 (305)
T ss_pred             cccCcCccccccccccccchhhccccCCccCccccCchhc
Confidence            6422111                01123567889999974

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.95  E-value=1.6e-27  Score=183.10  Aligned_cols=162  Identities=19%  Similarity=0.270  Sum_probs=137.7

Q ss_pred             eccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEEe
Q 028725           32 MGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE  107 (205)
Q Consensus        32 lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e  107 (205)
                      ||+|+||.||+|.. .+|+.+++|.+....   ......+.+|+.+++.++|||++++.+.+..       .+..++++|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~~~lv~e   73 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFET-------KDDLCLVMT   73 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEec-------CCeEEEEEe
Confidence            68999999999984 468899999986542   2334556789999999999999999887755       568999999


Q ss_pred             ecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcccccc
Q 028725          108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK  187 (205)
Q Consensus       108 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~  187 (205)
                      |+++++|.+++.......+++..+..++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||.+........
T Consensus        74 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~---~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~  150 (277)
T cd05577          74 LMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQ---RRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKK  150 (277)
T ss_pred             cCCCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEEccCcchhhhccCCc
Confidence            9999999999876554568999999999999999999999   7999999999999999999999999999987665444


Q ss_pred             cccccccccccCCCCC
Q 028725          188 VGHVTPYSGSINPTNS  203 (205)
Q Consensus       188 ~~~~~~~~~~~aPE~~  203 (205)
                      .....++..|+|||..
T Consensus       151 ~~~~~~~~~y~~PE~~  166 (277)
T cd05577         151 IKGRAGTPGYMAPEVL  166 (277)
T ss_pred             cccccCCCCcCCHHHh
Confidence            4445778899999964

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.95  E-value=2e-27  Score=183.01  Aligned_cols=168  Identities=20%  Similarity=0.367  Sum_probs=141.0

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +|+..+.||.|++|.||+|... +++.+++|.++...  ......+.+|++++++++||||+++.+.+.+       ...
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-------~~~   73 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT-------ENK   73 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhccc-------CCc
Confidence            5889999999999999999954 68899999886543  2234578889999999999999999998865       567


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++||+. ++|.+++.......+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        74 ~~~v~e~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~---~~i~H~~l~p~nill~~~~~~~l~dfg~~~~  149 (284)
T cd07860          74 LYLVFEFLH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARA  149 (284)
T ss_pred             EEEEeeccc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEeeccchhh
Confidence            999999996 589888876554578999999999999999999999   7999999999999999999999999999876


Q ss_pred             cccccc-cccccccccccCCCCC
Q 028725          182 AENAEK-VGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~-~~~~~~~~~~~aPE~~  203 (205)
                      ...... .....++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~y~aPE~~  172 (284)
T cd07860         150 FGVPVRTYTHEVVTLWYRAPEIL  172 (284)
T ss_pred             cccCccccccccccccccCCeEE
Confidence            544322 2233567889999954

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.95  E-value=1e-27  Score=186.16  Aligned_cols=167  Identities=18%  Similarity=0.313  Sum_probs=142.3

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      ..|.....||+|+||.||++.. .+++.+++|.+........+.+.+|+..+..++|||++++.+.+..       ++..
T Consensus        21 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~-------~~~~   93 (297)
T cd06659          21 SLLENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLV-------GEEL   93 (297)
T ss_pred             hhHHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheee-------CCeE
Confidence            4455666899999999999995 4688999999976555566778899999999999999999998866       6789


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      ++++||+++++|.+++...   .+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++...
T Consensus        94 ~iv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~  167 (297)
T cd06659          94 WVLMEFLQGGALTDIVSQT---RLNEEQIATVCESVLQALCYLHS---QGVIHRDIKSDSILLTLDGRVKLSDFGFCAQI  167 (297)
T ss_pred             EEEEecCCCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHeEEccCCcEEEeechhHhhc
Confidence            9999999999999977553   57899999999999999999999   79999999999999999999999999998755


Q ss_pred             cccc-ccccccccccccCCCCC
Q 028725          183 ENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       183 ~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      .... ......++..|+|||..
T Consensus       168 ~~~~~~~~~~~~~~~y~aPE~~  189 (297)
T cd06659         168 SKDVPKRKSLVGTPYWMAPEVI  189 (297)
T ss_pred             ccccccccceecCccccCHHHH
Confidence            4432 22335788999999964

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.95  E-value=1.7e-27  Score=184.20  Aligned_cols=184  Identities=18%  Similarity=0.301  Sum_probs=149.1

Q ss_pred             cCHHHHHHHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhcc-CCCcccccccceee
Q 028725           14 FSLEELEEATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFE   91 (205)
Q Consensus        14 ~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~   91 (205)
                      +.+.++....++|.+.+.||+|+||.||++.. .+++.+++|++.... .....+.+|+.++..+ +|||++++.+.+..
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~   90 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS-DVDEEIEAEYNILQSLPNHPNVVKFYGMFYK   90 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc-cHHHHHHHHHHHHHHhcCCCCeEEEEEEEEe
Confidence            44456666789999999999999999999995 468899999986432 2345677888889888 79999999998765


Q ss_pred             ecccCCCCCeEEEEEeecCCCcHHHhhcc--CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC
Q 028725           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISG--HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL  169 (205)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~  169 (205)
                      ..  .......++++||+++++|.+++..  .....+++..++.++.|++.+|.|||+   .+++|+||+|+||++++++
T Consensus        91 ~~--~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~nili~~~~  165 (291)
T cd06639          91 AD--KLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHN---NRIIHRDVKGNNILLTTEG  165 (291)
T ss_pred             cc--ccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEEcCCC
Confidence            21  1223568999999999999998763  122468899999999999999999999   7999999999999999999


Q ss_pred             ceeEcCCCchhhccccc-ccccccccccccCCCCC
Q 028725          170 VAKISSYNLPLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       170 ~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      .++|+|||++....... ......++..|+|||..
T Consensus       166 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  200 (291)
T cd06639         166 GVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVI  200 (291)
T ss_pred             CEEEeecccchhcccccccccCccCCccccChhhh
Confidence            99999999997655432 23345788899999964

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.95  E-value=8.7e-28  Score=186.24  Aligned_cols=171  Identities=18%  Similarity=0.348  Sum_probs=137.9

Q ss_pred             hcCCCcceeeccCcceEEEEEEecC---------------CcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKN---------------GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSAL   86 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~---------------~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~   86 (205)
                      .++|++.+.||+|+||.||++....               ...|++|.+.... ......+.+|+++++.++|+|++++.
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~   83 (295)
T cd05097           4 RQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLL   83 (295)
T ss_pred             hHhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEE
Confidence            3689999999999999999987532               2358899886542 22345688999999999999999999


Q ss_pred             cceeeecccCCCCCeEEEEEeecCCCcHHHhhccCC----------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeec
Q 028725           87 GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA----------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSN  156 (205)
Q Consensus        87 ~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~----------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~  156 (205)
                      +.+..       .+..+++|||+++++|.+++....          ...+++..++.++.|++.||.|||+   .+++|+
T Consensus        84 ~~~~~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---~~i~H~  153 (295)
T cd05097          84 GVCVS-------DDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLAS---LNFVHR  153 (295)
T ss_pred             EEEcC-------CCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHh---cCeecc
Confidence            98865       567899999999999999985431          1236788889999999999999999   799999


Q ss_pred             CCccccEEeCCCCceeEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          157 NLKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       157 dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      ||||+||++++++.++|+|||++........   .....++..|+|||..
T Consensus       154 dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  203 (295)
T cd05097         154 DLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESI  203 (295)
T ss_pred             ccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhh
Confidence            9999999999999999999999975543221   1222446789999964

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.95  E-value=1.4e-27  Score=181.88  Aligned_cols=171  Identities=19%  Similarity=0.329  Sum_probs=141.9

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ....+|++.+.||+|+||.||++....+..+++|.+... ......+.+|+.+++.++|+|++++.+.+..        .
T Consensus         3 ~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~--------~   73 (260)
T cd05073           3 IPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKLHAVVTK--------E   73 (260)
T ss_pred             ccccceeEEeEecCccceEEEEEEecCCccEEEEecCCC-hhHHHHHHHHHHHHHhcCCCCcceEEEEEcC--------C
Confidence            446789999999999999999999766778999988643 2345678889999999999999999877643        4


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++++||+++++|.+++........++..+..++.|++.+|.|||+   .+++|+||+|+||+++.++.++|+|||.+.
T Consensus        74 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~  150 (260)
T cd05073          74 PIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLAR  150 (260)
T ss_pred             CeEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHh---CCccccccCcceEEEcCCCcEEECCCccee
Confidence            57999999999999999986554567888899999999999999999   799999999999999999999999999997


Q ss_pred             hccccccc--ccccccccccCCCCC
Q 028725          181 LAENAEKV--GHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~--~~~~~~~~~~aPE~~  203 (205)
                      ........  ....++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~y~~PE~~  175 (260)
T cd05073         151 VIEDNEYTAREGAKFPIKWTAPEAI  175 (260)
T ss_pred             eccCCCcccccCCcccccccCHhHh
Confidence            65543211  122455779999964

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.95  E-value=1.1e-27  Score=184.12  Aligned_cols=169  Identities=16%  Similarity=0.322  Sum_probs=138.3

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCc----EEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGT----FIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~----~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      .++|++.+.||+|+||.||+|.+. ++.    +||+|+++... ......+.+|..+++.+.||||+++.+.+..     
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----   80 (279)
T cd05109           6 ETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLT-----   80 (279)
T ss_pred             hhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-----
Confidence            467899999999999999999853 444    47899986543 2335667889999999999999999988753     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                         ...+++++++++|+|.+++.... ..+++...+.++.|++.||.|||+   .+++||||||+||++++++.++|+||
T Consensus        81 ---~~~~l~~~~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~lH~---~~iiH~dlkp~Nil~~~~~~~kL~df  153 (279)
T cd05109          81 ---STVQLVTQLMPYGCLLDYVRENK-DRIGSQDLLNWCVQIAKGMSYLEE---VRLVHRDLAARNVLVKSPNHVKITDF  153 (279)
T ss_pred             ---CCcEEEEEcCCCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccccceEEEcCCCcEEECCC
Confidence               34678999999999999987543 368899999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhccccccc---ccccccccccCCCCC
Q 028725          177 NLPLLAENAEKV---GHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~~~---~~~~~~~~~~aPE~~  203 (205)
                      |+++........   ....++..|+|||..
T Consensus       154 G~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  183 (279)
T cd05109         154 GLARLLDIDETEYHADGGKVPIKWMALESI  183 (279)
T ss_pred             CceeecccccceeecCCCccchhhCCHHHh
Confidence            999866543221   122446679999974

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.95  E-value=1e-27  Score=184.52  Aligned_cols=171  Identities=23%  Similarity=0.396  Sum_probs=140.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      .+++...+.||+|+||.||++...      ++..+++|.++.........+.+|+..++.++|+||+++.+.+..     
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----   78 (280)
T cd05092           4 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTE-----   78 (280)
T ss_pred             hHhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEec-----
Confidence            357888999999999999999732      356788998876655666788999999999999999999988765     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCC-------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccE
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAW-------------QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDI  163 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~-------------~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~ni  163 (205)
                        ....++++||+++++|.+++.....             ..+++..+..++.|++.|+.|||+   .+++|+||||+||
T Consensus        79 --~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~---~~i~H~dlkp~ni  153 (280)
T cd05092          79 --GRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLAS---LHFVHRDLATRNC  153 (280)
T ss_pred             --CCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHH---CCeecccccHhhE
Confidence              5678999999999999999864321             247889999999999999999999   7999999999999


Q ss_pred             EeCCCCceeEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          164 LLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       164 lv~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      ++++++.++|+|||++........   .....++..|+|||..
T Consensus       154 l~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  196 (280)
T cd05092         154 LVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESI  196 (280)
T ss_pred             EEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCHHHh
Confidence            999999999999999875543221   1122346789999964

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.95  E-value=1.2e-27  Score=182.90  Aligned_cols=162  Identities=20%  Similarity=0.342  Sum_probs=128.9

Q ss_pred             eeccCcceEEEEEEecC---CcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEE
Q 028725           31 FMGEGSKGQMYRGRLKN---GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIF  106 (205)
Q Consensus        31 ~lg~g~~g~V~~~~~~~---~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~  106 (205)
                      .||+|+||.||+|...+   ...+++|.+.... ......+.+|+..++.++|+||+++.+.+..       ....+++|
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~-------~~~~~lv~   74 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIE-------SIPYLLVL   74 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECC-------CCceEEEE
Confidence            58999999999997433   3467888775443 2234567889999999999999999998865       56789999


Q ss_pred             eecCCCcHHHhhccCCC---CCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcc
Q 028725          107 EYVPNGTLRSWISGHAW---QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  183 (205)
Q Consensus       107 e~~~~~~L~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~  183 (205)
                      ||+++++|.+++.....   ...++.....++.|++.|+.|||+   .+++||||||+||+++.++.++|+|||++....
T Consensus        75 e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~  151 (269)
T cd05042          75 EFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQ---ADFIHSDLALRNCQLTADLSVKIGDYGLALEQY  151 (269)
T ss_pred             EeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHh---cCEecccccHhheEecCCCcEEEeccccccccc
Confidence            99999999999875431   234677788999999999999999   799999999999999999999999999986543


Q ss_pred             ccc---ccccccccccccCCCC
Q 028725          184 NAE---KVGHVTPYSGSINPTN  202 (205)
Q Consensus       184 ~~~---~~~~~~~~~~~~aPE~  202 (205)
                      ...   ......++..|+|||.
T Consensus       152 ~~~~~~~~~~~~~~~~y~aPE~  173 (269)
T cd05042         152 PEDYYITKDCHAVPLRWLAPEL  173 (269)
T ss_pred             cchheeccCCCCCcccccCHHH
Confidence            221   1122345677999995

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1.5e-28  Score=198.09  Aligned_cols=177  Identities=18%  Similarity=0.358  Sum_probs=155.2

Q ss_pred             HHHHHHhcCCCcceeeccCcceEEEEEEecC-CcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        17 ~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~-~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      ++|+....+-...+.||-|-||.||.|.|+. .-.||+|.++ +.......|..|..+++.++|||+++++|+|..    
T Consensus       260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLK-EDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~----  334 (1157)
T KOG4278|consen  260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTH----  334 (1157)
T ss_pred             chhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhh-hcchhHHHHHHHHHHHHhhcCccHHHHhhhhcc----
Confidence            6788888888888999999999999999864 6689999997 556778899999999999999999999999976    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                         ...+|||+|||..|+|-+++...++..++...+++++-||..||.||..   +++|||||.++|+||.+++.+||+|
T Consensus       335 ---EpPFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEk---knFIHRDLAARNCLVgEnhiVKvAD  408 (1157)
T KOG4278|consen  335 ---EPPFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHIVKVAD  408 (1157)
T ss_pred             ---CCCeEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHH---hhhhhhhhhhhhccccccceEEeec
Confidence               6679999999999999999998777789999999999999999999999   8999999999999999999999999


Q ss_pred             CCchhhcccccccccc--cccccccCCCCCC
Q 028725          176 YNLPLLAENAEKVGHV--TPYSGSINPTNSA  204 (205)
Q Consensus       176 fg~a~~~~~~~~~~~~--~~~~~~~aPE~~~  204 (205)
                      ||++++.+.+.-..+-  --..-|.|||..|
T Consensus       409 FGLsRlMtgDTYTAHAGAKFPIKWTAPEsLA  439 (1157)
T KOG4278|consen  409 FGLSRLMTGDTYTAHAGAKFPIKWTAPESLA  439 (1157)
T ss_pred             cchhhhhcCCceecccCccCcccccCccccc
Confidence            9999998876422111  1223588999865

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.95  E-value=2.2e-27  Score=180.60  Aligned_cols=161  Identities=21%  Similarity=0.328  Sum_probs=131.3

Q ss_pred             eeccCcceEEEEEEec---CCcEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEE
Q 028725           31 FMGEGSKGQMYRGRLK---NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIF  106 (205)
Q Consensus        31 ~lg~g~~g~V~~~~~~---~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~  106 (205)
                      .||+|+||.||+|.+.   ++..+++|++..... ...+.+.+|+.+++.++||||+++.+.+.        ....++++
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~--------~~~~~lv~   73 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE--------AEALMLVM   73 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc--------CCCeEEEE
Confidence            3899999999999854   355689999875532 33466889999999999999999998763        24689999


Q ss_pred             eecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccccc
Q 028725          107 EYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE  186 (205)
Q Consensus       107 e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~  186 (205)
                      ||+++++|.+++.... ..+++..++.++.|++.+|.|||+   .+++|+||||+||+++.++.++|+|||++.......
T Consensus        74 e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~  149 (257)
T cd05115          74 EMASGGPLNKFLSGKK-DEITVSNVVELMHQVSMGMKYLEG---KNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADD  149 (257)
T ss_pred             EeCCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHh---cCeeecccchheEEEcCCCcEEeccCCccccccCCc
Confidence            9999999999987543 468999999999999999999999   799999999999999999999999999997655432


Q ss_pred             cc----ccccccccccCCCCC
Q 028725          187 KV----GHVTPYSGSINPTNS  203 (205)
Q Consensus       187 ~~----~~~~~~~~~~aPE~~  203 (205)
                      ..    ....++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~y~aPE~~  170 (257)
T cd05115         150 SYYKARSAGKWPLKWYAPECI  170 (257)
T ss_pred             cceeccCCCCCCcccCCHHHH
Confidence            21    111235679999963

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.95  E-value=6.3e-28  Score=185.82  Aligned_cols=170  Identities=23%  Similarity=0.320  Sum_probs=138.1

Q ss_pred             cCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccCCc-CHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      .+|++.+.||+|+||.||+|...      +++.+|+|+++..... ....+.+|+.++..++||||+++.+.+..     
T Consensus         5 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~-----   79 (283)
T cd05091           5 STVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTK-----   79 (283)
T ss_pred             HHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC-----
Confidence            46888899999999999999853      2468999999754322 24567889999999999999999998865     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCcccc
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHA--------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITD  162 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~--------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~n  162 (205)
                        ....++++||+.+++|.+++..+.              ...+++..+..++.|++.||.|||+   .+++||||||+|
T Consensus        80 --~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~---~gi~H~dlkp~N  154 (283)
T cd05091          80 --EQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSS---HHVVHKDLATRN  154 (283)
T ss_pred             --CCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHH---cCccccccchhh
Confidence              567899999999999999985321              1247788889999999999999999   799999999999


Q ss_pred             EEeCCCCceeEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          163 ILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       163 ilv~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      |++++++.++|+|||+++.......   .....++..|+|||+.
T Consensus       155 il~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  198 (283)
T cd05091         155 VLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAI  198 (283)
T ss_pred             eEecCCCceEecccccccccccchheeeccCccCCccccCHHHH
Confidence            9999999999999999876543321   1223456789999964

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.95  E-value=1.1e-27  Score=183.83  Aligned_cols=159  Identities=21%  Similarity=0.339  Sum_probs=129.0

Q ss_pred             eeccCcceEEEEEEecC-------------------------CcEEEEEEecccCCcCHHHHHHHHHHHhccCCCccccc
Q 028725           31 FMGEGSKGQMYRGRLKN-------------------------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSA   85 (205)
Q Consensus        31 ~lg~g~~g~V~~~~~~~-------------------------~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~   85 (205)
                      .||+|+||.||+|.+..                         ...|++|+++.........+.+|+.+++.++||||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            58999999999997421                         13578888865544445678889999999999999999


Q ss_pred             ccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEe
Q 028725           86 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL  165 (205)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv  165 (205)
                      .+.+..       ....++||||+++++|..++.... ..+++..+..++.|++.||.|||+   .+++||||||+||++
T Consensus        82 ~~~~~~-------~~~~~lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~---~~iiH~dlkp~Nill  150 (274)
T cd05076          82 HGVCVR-------GSENIMVEEFVEHGPLDVCLRKEK-GRVPVAWKITVAQQLASALSYLED---KNLVHGNVCAKNILL  150 (274)
T ss_pred             EEEEEe-------CCceEEEEecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHc---CCccCCCCCcccEEE
Confidence            999876       567899999999999999886533 367888899999999999999999   799999999999999


Q ss_pred             CCCC-------ceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          166 DQNL-------VAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       166 ~~~~-------~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ++.+       .++++|||++.......   ...++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~kl~d~g~~~~~~~~~---~~~~~~~~~aPe~~  192 (274)
T cd05076         151 ARLGLAEGTSPFIKLSDPGVSFTALSRE---ERVERIPWIAPECV  192 (274)
T ss_pred             eccCcccCccceeeecCCcccccccccc---ccccCCcccCchhh
Confidence            7543       47999999886443222   23567789999965

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.95  E-value=8.7e-28  Score=184.55  Aligned_cols=167  Identities=16%  Similarity=0.315  Sum_probs=141.3

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ..|+..+.||+|+||.||+|.. .++..+++|.++... ......+.+|+.+++.++||||+++.+.+..       ...
T Consensus         4 ~~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~   76 (277)
T cd06642           4 ELFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLK-------GTK   76 (277)
T ss_pred             HHHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhccccc-------CCc
Confidence            4467778899999999999985 457889999987543 3345678899999999999999999998865       567


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++|+||+++++|.+++...   .+++..+..++.|++.++.|||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        77 ~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~---~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~  150 (277)
T cd06642          77 LWIIMEYLGGGSALDLLKPG---PLEETYIATILREILKGLDYLHS---ERKIHRDIKAANVLLSEQGDVKLADFGVAGQ  150 (277)
T ss_pred             eEEEEEccCCCcHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHhc---CCeeccCCChheEEEeCCCCEEEcccccccc
Confidence            99999999999999988653   57889999999999999999999   7999999999999999999999999999976


Q ss_pred             ccccc-ccccccccccccCCCCC
Q 028725          182 AENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ..... ......++..|+|||+.
T Consensus       151 ~~~~~~~~~~~~~~~~y~aPE~~  173 (277)
T cd06642         151 LTDTQIKRNTFVGTPFWMAPEVI  173 (277)
T ss_pred             ccCcchhhhcccCcccccCHHHh
Confidence            55432 22234678899999975

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=8.4e-29  Score=186.21  Aligned_cols=170  Identities=19%  Similarity=0.274  Sum_probs=145.8

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcC---HHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHS---TRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~---~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ..++|..++.||+|.||.|-+++. .+++.+|+|+++++-...   ...-..|-++|+.++||.+..+--.+..      
T Consensus       166 Tm~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt------  239 (516)
T KOG0690|consen  166 TMEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQT------  239 (516)
T ss_pred             ccchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhcc------
Confidence            457899999999999999999995 479999999998774333   3344568899999999999887666654      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ...+++||||..||.|.-.+.+..  .+++.....+...|..||.|||+   .+|++||+|.+|.++|.+|.+||.|||
T Consensus       240 -~drlCFVMeyanGGeLf~HLsrer--~FsE~RtRFYGaEIvsAL~YLHs---~~ivYRDlKLENLlLDkDGHIKitDFG  313 (516)
T KOG0690|consen  240 -QDRLCFVMEYANGGELFFHLSRER--VFSEDRTRFYGAEIVSALGYLHS---RNIVYRDLKLENLLLDKDGHIKITDFG  313 (516)
T ss_pred             -CceEEEEEEEccCceEeeehhhhh--cccchhhhhhhHHHHHHhhhhhh---CCeeeeechhhhheeccCCceEeeecc
Confidence             678999999999999988777654  78999999999999999999999   799999999999999999999999999


Q ss_pred             chhh-cccccccccccccccccCCCCC
Q 028725          178 LPLL-AENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~-~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +++. ++.+......+||+.|+|||..
T Consensus       314 LCKE~I~~g~t~kTFCGTPEYLAPEVl  340 (516)
T KOG0690|consen  314 LCKEEIKYGDTTKTFCGTPEYLAPEVL  340 (516)
T ss_pred             cchhcccccceeccccCChhhcCchhh
Confidence            9964 3444455668999999999975

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.95  E-value=1.7e-27  Score=187.25  Aligned_cols=166  Identities=13%  Similarity=0.205  Sum_probs=135.6

Q ss_pred             cceeeccC--cceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           28 TSAFMGEG--SKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        28 ~~~~lg~g--~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      +++.||+|  +|++||++.. .+|+.||+|.++...  ......+.+|+.+++.++||||+++.+.+..       .+..
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~-------~~~~   74 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIA-------DNEL   74 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEE-------CCEE
Confidence            56789999  6789999995 568999999997553  2234567789999999999999999998876       5689


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      ++|+||+++++|.+++..+....+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++++||+.+...
T Consensus        75 ~lv~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~---~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~  151 (327)
T cd08227          75 WVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHH---MGYVHRSVKASHILISVDGKVYLSGLRSNLSM  151 (327)
T ss_pred             EEEEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCChhhEEEecCCcEEEcccchhhcc
Confidence            999999999999999976543468899999999999999999999   79999999999999999999999999865433


Q ss_pred             cccc--------ccccccccccccCCCCC
Q 028725          183 ENAE--------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       183 ~~~~--------~~~~~~~~~~~~aPE~~  203 (205)
                      ....        ......++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  180 (327)
T cd08227         152 INHGQRLRVVHDFPKYSVKVLPWLSPEVL  180 (327)
T ss_pred             ccccccccccccccccccceecccChHHh
Confidence            2211        11123566779999964

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.95  E-value=3.6e-27  Score=184.34  Aligned_cols=164  Identities=20%  Similarity=0.275  Sum_probs=131.1

Q ss_pred             ceeeccCcceEEEEEEec---CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEE
Q 028725           29 SAFMGEGSKGQMYRGRLK---NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (205)
                      +..||+|+||.||+|...   ++..+|+|.++...  ....+.+|+.+++.++||||+++.+.+..     ......+++
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~~~~~~~lv   78 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG--ISMSACREIALLRELKHPNVIALQKVFLS-----HSDRKVWLL   78 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCC--CcHHHHHHHHHHHhCCCCCeeeEEEEEec-----cCCCeEEEE
Confidence            467999999999999964   35789999886432  33457789999999999999999988754     235678999


Q ss_pred             EeecCCCcHHHhhccC-------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEe----CCCCceeEc
Q 028725          106 FEYVPNGTLRSWISGH-------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL----DQNLVAKIS  174 (205)
Q Consensus       106 ~e~~~~~~L~~~~~~~-------~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv----~~~~~~~l~  174 (205)
                      +||+.+ +|.+++...       ....+++..+..++.|++.||.|||+   .+++||||||+||++    +.++.++|+
T Consensus        79 ~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~~kl~  154 (317)
T cd07867          79 FDYAEH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPERGRVKIA  154 (317)
T ss_pred             EeeeCC-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHh---CCEEcCCCCHHHEEEccCCCCCCcEEEe
Confidence            999865 777776421       12357888899999999999999999   799999999999999    456799999


Q ss_pred             CCCchhhccccc----ccccccccccccCCCCC
Q 028725          175 SYNLPLLAENAE----KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       175 Dfg~a~~~~~~~----~~~~~~~~~~~~aPE~~  203 (205)
                      |||+++......    ......+|..|+|||..
T Consensus       155 DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~  187 (317)
T cd07867         155 DMGFARLFNSPLKPLADLDPVVVTFWYRAPELL  187 (317)
T ss_pred             eccceeccCCCcccccccCcceecccccCcHHh
Confidence            999998665432    12334788999999964

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.95  E-value=1.9e-27  Score=180.55  Aligned_cols=169  Identities=14%  Similarity=0.254  Sum_probs=143.4

Q ss_pred             CCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +|++.+.||+|+||.||.+.. .+++.+++|.+....  ......+.+|+.+++.++||||+++.+.+..       .+.
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~   73 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEE-------NGN   73 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecC-------CCe
Confidence            588999999999999999994 468899999986542  3345678899999999999999999988755       668


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++||+++++|.+.+.......+++.....++.|++.++.|||+   .+++|+||+|+||+++.++.++|+|||++..
T Consensus        74 ~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~  150 (256)
T cd08218          74 LYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTIKLGDFGIARV  150 (256)
T ss_pred             EEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEEeeccceee
Confidence            9999999999999998876544467889999999999999999999   7999999999999999999999999999976


Q ss_pred             ccccc-ccccccccccccCCCCC
Q 028725          182 AENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ..... ......++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~pe~~  173 (256)
T cd08218         151 LNSTVELARTCIGTPYYLSPEIC  173 (256)
T ss_pred             cCcchhhhhhccCCccccCHHHh
Confidence            65432 22234678889999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.95  E-value=1.4e-27  Score=184.77  Aligned_cols=171  Identities=22%  Similarity=0.352  Sum_probs=142.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|+..+.||.|++|.||+|... +++.+++|.++....  .....+.+|+.++.+++||||+++.+.+..     ...
T Consensus         4 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~-----~~~   78 (293)
T cd07843           4 VDEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVG-----SNL   78 (293)
T ss_pred             hhhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEe-----cCC
Confidence            367999999999999999999965 588999999975532  233456789999999999999999998765     123


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++++||+.+ +|.+++.... ..+++.....++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++
T Consensus        79 ~~~~lv~e~~~~-~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~---~~i~H~dl~p~nili~~~~~~~l~d~g~~  153 (293)
T cd07843          79 DKIYMVMEYVEH-DLKSLMETMK-QPFLQSEVKCLMLQLLSGVAHLHD---NWILHRDLKTSNLLLNNRGILKICDFGLA  153 (293)
T ss_pred             CcEEEEehhcCc-CHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHHHEEECCCCcEEEeecCce
Confidence            689999999975 9998887544 368999999999999999999999   79999999999999999999999999999


Q ss_pred             hhccccc-ccccccccccccCCCCC
Q 028725          180 LLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ....... ......++..|+|||..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~aPE~~  178 (293)
T cd07843         154 REYGSPLKPYTQLVVTLWYRAPELL  178 (293)
T ss_pred             eeccCCccccccccccccccCchhh
Confidence            8666542 22334678889999964

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.6e-27  Score=182.33  Aligned_cols=178  Identities=18%  Similarity=0.324  Sum_probs=146.3

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ...++|++.+.||+|++|.||+|... +++.+++|++.... .....+.+|+.+++++ .|+||+++.+.+...... ..
T Consensus         3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~-~~   80 (275)
T cd06608           3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIE-DEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPP-GN   80 (275)
T ss_pred             CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCc-hhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCC-Cc
Confidence            34689999999999999999999964 57889999987543 3456788999999998 699999999988653211 12


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHA--WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                      ....++++||+++++|.+++....  ...+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+||
T Consensus        81 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~---~~i~H~~l~p~ni~~~~~~~~~l~d~  157 (275)
T cd06608          81 DDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHE---NKVIHRDIKGQNILLTKNAEVKLVDF  157 (275)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHHHEEEccCCeEEECCC
Confidence            456899999999999999886432  3468899999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhccccc-ccccccccccccCCCCC
Q 028725          177 NLPLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      |++....... ......++..|+|||..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~  185 (275)
T cd06608         158 GVSAQLDSTLGRRNTFIGTPYWMAPEVI  185 (275)
T ss_pred             ccceecccchhhhcCccccccccCHhHh
Confidence            9987654432 23345788899999964

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.95  E-value=3.2e-27  Score=179.11  Aligned_cols=168  Identities=24%  Similarity=0.443  Sum_probs=140.9

Q ss_pred             CCcceeeccCcceEEEEEEecC-C----cEEEEEEecccCCc-CHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           26 FDTSAFMGEGSKGQMYRGRLKN-G----TFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~~~-~----~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      +++.+.||.|+||.||++.... +    ..+++|++...... ....+.+|+..+..++|+|++++++.+.+       .
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~   73 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTE-------E   73 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcC-------C
Confidence            4577899999999999999653 3    78999999755433 56788899999999999999999998866       4


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++++|++++++|.+++.......+++..+..++.|++.++.+||+   .+++|+||+|+||++++++.++|+|||++
T Consensus        74 ~~~~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~---~~~~h~dl~~~nil~~~~~~~~l~dfg~~  150 (258)
T smart00219       74 EPLMIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLES---KNFIHRDLAARNCLVGENLVVKISDFGLS  150 (258)
T ss_pred             CeeEEEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhc---CCeeecccccceEEEccCCeEEEcccCCc
Confidence            689999999999999999876542338999999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccccc--cccccccccCCCCC
Q 028725          180 LLAENAEKVG--HVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~--~~~~~~~~~aPE~~  203 (205)
                      ..........  ...++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~y~~Pe~~  176 (258)
T smart00219      151 RDLYDDDYYKKKGGKLPIRWMAPESL  176 (258)
T ss_pred             eecccccccccccCCCcccccChHHh
Confidence            7666542211  12366889999953

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.95  E-value=2e-27  Score=181.79  Aligned_cols=164  Identities=22%  Similarity=0.365  Sum_probs=131.1

Q ss_pred             eeeccCcceEEEEEEecC---CcEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEE
Q 028725           30 AFMGEGSKGQMYRGRLKN---GTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~~---~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (205)
                      +.||+|+||.||+|...+   +..+++|.++.... .....+.+|+.+++.++||||+++.+.+.+       ....+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~~~~lv   73 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTE-------VTPYLLV   73 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcC-------CCCcEEE
Confidence            358999999999998543   45789998865432 234568889999999999999999988765       4568999


Q ss_pred             EeecCCCcHHHhhccCC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          106 FEYVPNGTLRSWISGHA---WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       106 ~e~~~~~~L~~~~~~~~---~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      |||+++++|.+++....   ....++.....++.|++.|+.|||+   .+++|+||||+||+++.++.++|+|||++...
T Consensus        74 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~  150 (269)
T cd05087          74 MEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHK---NNFIHSDLALRNCLLTADLTVKIGDYGLSHNK  150 (269)
T ss_pred             EECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHH---CCEeccccCcceEEEcCCCcEEECCccccccc
Confidence            99999999999986432   1245667778899999999999999   79999999999999999999999999998654


Q ss_pred             ccccc---cccccccccccCCCCC
Q 028725          183 ENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       183 ~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      .....   .....++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~y~aPE~~  174 (269)
T cd05087         151 YKEDYYVTPDQLWVPLRWIAPELV  174 (269)
T ss_pred             cCcceeecCCCcCCcccccCHhHh
Confidence            33221   1223567789999964

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.95  E-value=2.5e-27  Score=180.47  Aligned_cols=160  Identities=18%  Similarity=0.298  Sum_probs=138.5

Q ss_pred             eccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEEe
Q 028725           32 MGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE  107 (205)
Q Consensus        32 lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e  107 (205)
                      ||.|++|.||++... +++.+++|++....   ....+.+.+|+.+++.++||||+++.+.+.+       +...++++|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~~~lv~e   73 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKD-------KKYIYMLME   73 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEc-------CCccEEEEe
Confidence            689999999999954 58899999997543   2344678899999999999999999998765       567999999


Q ss_pred             ecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcccccc
Q 028725          108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK  187 (205)
Q Consensus       108 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~  187 (205)
                      |+++++|.+++....  .+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++........
T Consensus        74 ~~~~~~L~~~l~~~~--~l~~~~~~~~~~~i~~~l~~lH~---~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~  148 (262)
T cd05572          74 YCLGGELWTILRDRG--LFDEYTARFYIACVVLAFEYLHN---RGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQK  148 (262)
T ss_pred             cCCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCHHHEEEcCCCCEEEeeCCcccccCcccc
Confidence            999999999997654  58889999999999999999999   7999999999999999999999999999987766544


Q ss_pred             cccccccccccCCCCC
Q 028725          188 VGHVTPYSGSINPTNS  203 (205)
Q Consensus       188 ~~~~~~~~~~~aPE~~  203 (205)
                      .....++..|++||..
T Consensus       149 ~~~~~~~~~~~~PE~~  164 (262)
T cd05572         149 TWTFCGTPEYVAPEII  164 (262)
T ss_pred             cccccCCcCccChhHh
Confidence            4445788899999974

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=7.1e-28  Score=196.17  Aligned_cols=162  Identities=23%  Similarity=0.311  Sum_probs=140.2

Q ss_pred             eeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEEeec
Q 028725           31 FMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYV  109 (205)
Q Consensus        31 ~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~  109 (205)
                      .||+|.||+||-|+. .+...+|+|-+.-......+.+.+|+.+-+.++|.||++++|.+.+       ++.+-+.||.+
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~se-------nGf~kIFMEqV  654 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSE-------NGFFKIFMEQV  654 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCC-------CCeEEEEeecC
Confidence            589999999999994 4577899999976667778889999999999999999999998855       66888999999


Q ss_pred             CCCcHHHhhccCCCCCC--CHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC-CCCceeEcCCCchhhccccc
Q 028725          110 PNGTLRSWISGHAWQSL--TWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD-QNLVAKISSYNLPLLAENAE  186 (205)
Q Consensus       110 ~~~~L~~~~~~~~~~~~--~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~-~~~~~~l~Dfg~a~~~~~~~  186 (205)
                      +||+|.+++.... +++  .+.++..+.+||++||.|||+   ..|+|||||-+|++|. -.|.+||+|||.++.+..-.
T Consensus       655 PGGSLSsLLrskW-GPlKDNEstm~fYtkQILeGLkYLHe---n~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAgin  730 (1226)
T KOG4279|consen  655 PGGSLSSLLRSKW-GPLKDNESTMNFYTKQILEGLKYLHE---NKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGIN  730 (1226)
T ss_pred             CCCcHHHHHHhcc-CCCccchhHHHHHHHHHHHHhhhhhh---cceeeccccCCcEEEeeccceEEecccccchhhccCC
Confidence            9999999987543 455  788899999999999999999   6999999999999998 56899999999997666543


Q ss_pred             cc-ccccccccccCCCCC
Q 028725          187 KV-GHVTPYSGSINPTNS  203 (205)
Q Consensus       187 ~~-~~~~~~~~~~aPE~~  203 (205)
                      +. ....||.+|||||.-
T Consensus       731 P~TETFTGTLQYMAPEvI  748 (1226)
T KOG4279|consen  731 PCTETFTGTLQYMAPEVI  748 (1226)
T ss_pred             ccccccccchhhhChHhh
Confidence            33 446999999999964

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.95  E-value=2.8e-27  Score=179.73  Aligned_cols=158  Identities=20%  Similarity=0.357  Sum_probs=130.4

Q ss_pred             eeeccCcceEEEEEEecC-C----------cEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           30 AFMGEGSKGQMYRGRLKN-G----------TFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~~-~----------~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      +.||+|+||.||+|...+ +          ..+++|.+...... ...+.+|+.+++.++||||+++.+.+..       
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------   72 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLYGVCVR-------   72 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhheeeEEec-------
Confidence            468999999999999653 3          24777777544333 6778899999999999999999998754       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC-------ce
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-------VA  171 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~-------~~  171 (205)
                       ...++++||+++++|.+++.... ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++       .+
T Consensus        73 -~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dlkp~Nill~~~~~~~~~~~~~  147 (259)
T cd05037          73 -DENIMVEEYVKFGPLDVFLHREK-NNVSLHWKLDVAKQLASALHYLED---KKLVHGNVCGKNILVARYGLNEGYVPFI  147 (259)
T ss_pred             -CCcEEEEEcCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhh---CCeecccCccceEEEecCccccCCceeE
Confidence             34689999999999999987654 268888999999999999999999   7999999999999999887       79


Q ss_pred             eEcCCCchhhcccccccccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +|+|||++......   ....++..|+|||+.
T Consensus       148 kl~Dfg~a~~~~~~---~~~~~~~~y~aPE~~  176 (259)
T cd05037         148 KLSDPGIPITVLSR---EERVERIPWIAPECI  176 (259)
T ss_pred             EeCCCCcccccccc---cccccCCCccChhhh
Confidence            99999999865542   223566789999975

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.95  E-value=4.4e-27  Score=178.13  Aligned_cols=169  Identities=16%  Similarity=0.335  Sum_probs=145.5

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +|++.+.||.|++|.||++... ++..+++|++.....  .....+.+|++.++.++|+|++++.+.+..       ...
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~-------~~~   73 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEE-------KGK   73 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEec-------CCE
Confidence            5888999999999999999954 688999999976533  456678899999999999999999988765       578


Q ss_pred             EEEEEeecCCCcHHHhhccCC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          102 IFLIFEYVPNGTLRSWISGHA--WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      .++++|++++++|.+.+....  ...+++..+..++.+++.||.+||+   .+++|+||+|+||++++++.++|+|||++
T Consensus        74 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~---~~~~H~dl~~~nil~~~~~~~~l~d~~~~  150 (258)
T cd08215          74 LCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHS---RKILHRDIKPQNIFLTSNGLVKLGDFGIS  150 (258)
T ss_pred             EEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHh---CCEecccCChHHeEEcCCCcEEECCccce
Confidence            999999999999999987542  3578999999999999999999999   79999999999999999999999999999


Q ss_pred             hhccccc-ccccccccccccCCCCC
Q 028725          180 LLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ....... ......++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~y~~pe~~  175 (258)
T cd08215         151 KVLSSTVDLAKTVVGTPYYLSPELC  175 (258)
T ss_pred             eecccCcceecceeeeecccChhHh
Confidence            7665543 33335788899999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.95  E-value=2.9e-27  Score=181.37  Aligned_cols=170  Identities=21%  Similarity=0.371  Sum_probs=140.4

Q ss_pred             cCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccCCc-CHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      .+|+....||.|+||.||+|...      +.+.+++|.+...... ....+.+|+.+++.++|+||+++.+.+..     
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----   79 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCRE-----   79 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECC-----
Confidence            67899999999999999999954      2457899988654433 45678999999999999999999987754     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCC-------CCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAW-------QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL  169 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~-------~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~  169 (205)
                        .+..+++||++++++|.+++.....       ..+++..+..++.|++.+|.|||+   .+++|+||||+||+++.++
T Consensus        80 --~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~---~~i~H~dlkp~Nili~~~~  154 (275)
T cd05046          80 --AEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSN---ARFVHRDLAARNCLVSSQR  154 (275)
T ss_pred             --CCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhh---cCcccCcCccceEEEeCCC
Confidence              5678999999999999999875431       258899999999999999999999   7999999999999999999


Q ss_pred             ceeEcCCCchhhccccc--ccccccccccccCCCCC
Q 028725          170 VAKISSYNLPLLAENAE--KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       170 ~~~l~Dfg~a~~~~~~~--~~~~~~~~~~~~aPE~~  203 (205)
                      .++++|||++.......  ......++..|+|||..
T Consensus       155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  190 (275)
T cd05046         155 EVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEAV  190 (275)
T ss_pred             cEEEcccccccccCcccccccCCceeEEeecChhhh
Confidence            99999999986443222  22233566779999964

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.95  E-value=4.4e-28  Score=175.74  Aligned_cols=180  Identities=16%  Similarity=0.188  Sum_probs=149.8

Q ss_pred             HHhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ...++|++.+.||+|+|+.||++. ..++..+|+|++...+..+.+...+|++..++++|||++++++.+....-+  ..
T Consensus        18 In~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D--~~   95 (302)
T KOG2345|consen   18 INNKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKD--GK   95 (302)
T ss_pred             EcCceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhcc--Cc
Confidence            345789999999999999999999 667999999999887778888899999999999999999999877653222  35


Q ss_pred             CeEEEEEeecCCCcHHHhhccC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725          100 SRIFLIFEYVPNGTLRSWISGH--AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      ...|++++|+..|+|.+.+...  ++..+++..++.|+.++++||.+||+. ..++.||||||+||+++.++.+.+.|||
T Consensus        96 ~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl~D~G  174 (302)
T KOG2345|consen   96 HEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVLMDLG  174 (302)
T ss_pred             eeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEEEecc
Confidence            5799999999999999998743  445789999999999999999999993 2249999999999999999999999999


Q ss_pred             chhhccc----cc------ccccccccccccCCCCC
Q 028725          178 LPLLAEN----AE------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~----~~------~~~~~~~~~~~~aPE~~  203 (205)
                      .++...-    ..      ......-|..|.|||.+
T Consensus       175 S~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf  210 (302)
T KOG2345|consen  175 SATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELF  210 (302)
T ss_pred             CccccceEeechHHHHHHHHHHHHhCCCcccCchhe
Confidence            8853321    11      11223667889999975

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=3e-27  Score=181.46  Aligned_cols=167  Identities=18%  Similarity=0.386  Sum_probs=142.5

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc-CCcCHHHHHHHHHHHhccC---CCcccccccceeeecccCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK-KSHSTRNFMHHIELISKLR---HCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~---~~~i~~~~~~~~~~~~~~~~   98 (205)
                      +.|+..+.||.|+||.||+|.. .+++.+++|.++.. .......+.+|+.+++.++   |||++++.+.+..       
T Consensus         1 ~~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~-------   73 (277)
T cd06917           1 SLYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLK-------   73 (277)
T ss_pred             ChhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeee-------
Confidence            3588889999999999999995 56889999998754 2345567888999999986   9999999998765       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....++++||+++++|.+++...   .+++...+.++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||+
T Consensus        74 ~~~~~lv~e~~~~~~L~~~~~~~---~l~~~~~~~i~~~i~~~l~~lh~---~~i~H~dl~p~ni~i~~~~~~~l~dfg~  147 (277)
T cd06917          74 GPRLWIIMEYAEGGSVRTLMKAG---PIAEKYISVIIREVLVALKYIHK---VGVIHRDIKAANILVTNTGNVKLCDFGV  147 (277)
T ss_pred             CCEEEEEEecCCCCcHHHHHHcc---CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcCHHHEEEcCCCCEEEccCCc
Confidence            66899999999999999988653   68899999999999999999999   7999999999999999999999999999


Q ss_pred             hhhccccc-ccccccccccccCCCCC
Q 028725          179 PLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      +....... ......++..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~y~aPE~~  173 (277)
T cd06917         148 AALLNQNSSKRSTFVGTPYWMAPEVI  173 (277)
T ss_pred             eeecCCCccccccccCCcceeCHHHh
Confidence            87665433 23334788899999964

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.95  E-value=3.1e-27  Score=180.88  Aligned_cols=167  Identities=19%  Similarity=0.350  Sum_probs=139.5

Q ss_pred             CCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCC---c-------CHHHHHHHHHHHhccCCCcccccccceeeec
Q 028725           25 NFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS---H-------STRNFMHHIELISKLRHCHLVSALGHCFECY   93 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~---~-------~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   93 (205)
                      +|...+.||.|++|.||+|.. .+++.+++|.++....   .       ..+.+..|+.+++.++|||++++.+.+..  
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~--   79 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETT--   79 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEecc--
Confidence            588899999999999999985 4688999998854211   1       12457789999999999999999998765  


Q ss_pred             ccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeE
Q 028725           94 FDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  173 (205)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l  173 (205)
                           .+..++++||+++++|.+++....  .+++..+..++.|++.+|.|||+   .+++|+||+|+||++++++.++|
T Consensus        80 -----~~~~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~~~nil~~~~~~~~l  149 (272)
T cd06629          80 -----EEYLSIFLEYVPGGSIGSCLRTYG--RFEEQLVRFFTEQVLEGLAYLHS---KGILHRDLKADNLLVDADGICKI  149 (272)
T ss_pred             -----CCceEEEEecCCCCcHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHhh---CCeeecCCChhhEEEcCCCeEEE
Confidence                 568899999999999999987653  68888899999999999999999   79999999999999999999999


Q ss_pred             cCCCchhhcccccc---cccccccccccCCCCC
Q 028725          174 SSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       174 ~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      +|||++........   .....++..|+|||..
T Consensus       150 ~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  182 (272)
T cd06629         150 SDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVI  182 (272)
T ss_pred             eeccccccccccccccccccccCCccccCHHHh
Confidence            99999976543221   2234678899999963

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.95  E-value=2.5e-27  Score=181.33  Aligned_cols=169  Identities=17%  Similarity=0.327  Sum_probs=138.8

Q ss_pred             hcCCCcceeeccCcceEEEEEEecC----CcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKN----GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~----~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ..+|.+.+.||+|+||.||+|...+    ...+++|...... ....+.+.+|+.+++.++||||+++.+.+.+      
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~------   78 (270)
T cd05056           5 REDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE------   78 (270)
T ss_pred             hhhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC------
Confidence            4568899999999999999998543    2468889886554 3445678899999999999999999987753      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                        +..+++||++++++|.+++.... ..+++..++.++.+++.||.|||+   .+++|+||+|+||+++.++.++|+|||
T Consensus        79 --~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lH~---~~~~H~dl~p~nili~~~~~~~l~d~g  152 (270)
T cd05056          79 --NPVWIVMELAPLGELRSYLQVNK-YSLDLASLILYSYQLSTALAYLES---KRFVHRDIAARNVLVSSPDCVKLGDFG  152 (270)
T ss_pred             --CCcEEEEEcCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccChheEEEecCCCeEEccCc
Confidence              35789999999999999997543 358899999999999999999999   799999999999999999999999999


Q ss_pred             chhhccccccc--ccccccccccCCCCC
Q 028725          178 LPLLAENAEKV--GHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~--~~~~~~~~~~aPE~~  203 (205)
                      +++........  ....+...|+|||..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~  180 (270)
T cd05056         153 LSRYLEDESYYKASKGKLPIKWMAPESI  180 (270)
T ss_pred             eeeecccccceecCCCCccccccChhhh
Confidence            99766543221  122344679999964

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.95  E-value=3.6e-27  Score=181.32  Aligned_cols=169  Identities=21%  Similarity=0.396  Sum_probs=139.3

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCc----EEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGT----FIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~----~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      ..+|++.+.||+|+||.||+|... +|.    .+++|....... .....+.+|+..++.++|||++++.+.+..     
T Consensus         6 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----   80 (279)
T cd05057           6 ETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-----   80 (279)
T ss_pred             HHHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-----
Confidence            367899999999999999999954 333    588898865543 345678889999999999999999998753     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                         ...++++|++++++|.+++.... ..+++..++.++.|++.|+.|||+   .+++|+||+|+||++++++.++|+||
T Consensus        81 ---~~~~~v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~---~~i~H~di~p~nil~~~~~~~kL~df  153 (279)
T cd05057          81 ---SQVQLITQLMPLGCLLDYVRNHK-DNIGSQYLLNWCVQIAKGMSYLEE---KRLVHRDLAARNVLVKTPQHVKITDF  153 (279)
T ss_pred             ---CceEEEEecCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHh---CCEEecccCcceEEEcCCCeEEECCC
Confidence               46899999999999999987643 358899999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhccccccccc---ccccccccCCCCC
Q 028725          177 NLPLLAENAEKVGH---VTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~~~~~---~~~~~~~~aPE~~  203 (205)
                      |+++..........   ..++..|+|||..
T Consensus       154 g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  183 (279)
T cd05057         154 GLAKLLDVDEKEYHAEGGKVPIKWMALESI  183 (279)
T ss_pred             cccccccCcccceecCCCcccccccCHHHh
Confidence            99987664332221   1234679999964

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.95  E-value=4.8e-27  Score=178.78  Aligned_cols=169  Identities=17%  Similarity=0.350  Sum_probs=146.3

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ++|++.+.||.|++|.||+|... +++.+++|.+..... .....+.+|+..+..++|+|++++.+.+..       ...
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~   73 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYK-------EGE   73 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcc-------CCe
Confidence            47889999999999999999965 589999999876543 446778899999999999999999998865       578


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++||+++++|.+++...  ..+++...+.++.|++.++.|||+.  .+++|+||+|+||++++++.++|+|||.+..
T Consensus        74 ~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lh~~--~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~  149 (264)
T cd06623          74 ISIVLEYMDGGSLADLLKKV--GKIPEPVLAYIARQILKGLDYLHTK--RHIIHRDIKPSNLLINSKGEVKIADFGISKV  149 (264)
T ss_pred             EEEEEEecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHhcc--CCCccCCCCHHHEEECCCCCEEEccCcccee
Confidence            99999999999999999765  3689999999999999999999983  3999999999999999999999999999987


Q ss_pred             cccccccc-cccccccccCCCCC
Q 028725          182 AENAEKVG-HVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~~~-~~~~~~~~~aPE~~  203 (205)
                      ........ ...++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~y~~pE~~  172 (264)
T cd06623         150 LENTLDQCNTFVGTVTYMSPERI  172 (264)
T ss_pred             cccCCCcccceeecccccCHhhh
Confidence            66544332 45788899999964

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.95  E-value=2e-27  Score=185.87  Aligned_cols=174  Identities=21%  Similarity=0.400  Sum_probs=139.7

Q ss_pred             HHHhcCCCcceeeccCcceEEEEEEec--------CCcEEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCcccccccce
Q 028725           20 EEATNNFDTSAFMGEGSKGQMYRGRLK--------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHC   89 (205)
Q Consensus        20 ~~~~~~y~~~~~lg~g~~g~V~~~~~~--------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~   89 (205)
                      .....+|.+.+.||+|+||.||++...        ....+++|.++... ......+.+|+.+++.+ +||||+++.+++
T Consensus         8 ~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~   87 (314)
T cd05099           8 EFPRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVC   87 (314)
T ss_pred             cccHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEE
Confidence            344578999999999999999999742        24568999887542 23355678899999999 699999999988


Q ss_pred             eeecccCCCCCeEEEEEeecCCCcHHHhhccCC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceee
Q 028725           90 FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA--------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFS  155 (205)
Q Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h  155 (205)
                      ..       ....++++||+++++|.+++....              ...+++..+..++.|++.||.|||+   .+++|
T Consensus        88 ~~-------~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~---~gi~H  157 (314)
T cd05099          88 TQ-------EGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLES---RRCIH  157 (314)
T ss_pred             cc-------CCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHH---CCeee
Confidence            65       567899999999999999986432              1347888899999999999999999   79999


Q ss_pred             cCCccccEEeCCCCceeEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          156 NNLKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       156 ~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      +||||+||++++++.++|+|||+++.......   .....++..|+|||..
T Consensus       158 ~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  208 (314)
T cd05099         158 RDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEAL  208 (314)
T ss_pred             ccccceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHH
Confidence            99999999999999999999999976553221   1122344579999963

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.95  E-value=2e-27  Score=187.36  Aligned_cols=175  Identities=21%  Similarity=0.387  Sum_probs=140.3

Q ss_pred             HHHHhcCCCcceeeccCcceEEEEEEecC--------CcEEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCcccccccc
Q 028725           19 LEEATNNFDTSAFMGEGSKGQMYRGRLKN--------GTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGH   88 (205)
Q Consensus        19 ~~~~~~~y~~~~~lg~g~~g~V~~~~~~~--------~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~i~~~~~~   88 (205)
                      |.....+|.+++.||+|+||.||+|....        +..+++|.++... ......+.+|+.+++++ +||||+++.+.
T Consensus         7 ~~~~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~   86 (334)
T cd05100           7 WELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGA   86 (334)
T ss_pred             cccCHhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEE
Confidence            44445679999999999999999997421        2368999887442 23456788999999999 79999999998


Q ss_pred             eeeecccCCCCCeEEEEEeecCCCcHHHhhccCC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCcee
Q 028725           89 CFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA--------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVF  154 (205)
Q Consensus        89 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~  154 (205)
                      +..       .+..++++||+++++|.+++....              ...+++..+..++.|++.||.|||+   .+++
T Consensus        87 ~~~-------~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~---~giv  156 (334)
T cd05100          87 CTQ-------DGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLAS---QKCI  156 (334)
T ss_pred             Ecc-------CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHH---CCee
Confidence            865       567899999999999999987432              1247788889999999999999999   7999


Q ss_pred             ecCCccccEEeCCCCceeEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          155 SNNLKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       155 h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      ||||||+||+++.++.++|+|||+++.......   .....++..|+|||..
T Consensus       157 H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  208 (334)
T cd05100         157 HRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEAL  208 (334)
T ss_pred             ccccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHh
Confidence            999999999999999999999999976554321   1122345679999964

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.95  E-value=4.9e-27  Score=179.67  Aligned_cols=174  Identities=15%  Similarity=0.305  Sum_probs=137.4

Q ss_pred             CCcceeeccCcceEEEEEEec-C---CcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           26 FDTSAFMGEGSKGQMYRGRLK-N---GTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~~-~---~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      |.+.+.||+|+||.||.|... +   +..+|+|.++...  ......+.+|+..++.++|||++++.+.+...... ...
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~-~~~   79 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSL-QKI   79 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCcc-ccC
Confidence            578899999999999999853 2   3679999987543  23356788999999999999999999877652110 112


Q ss_pred             CeEEEEEeecCCCcHHHhhccC----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725          100 SRIFLIFEYVPNGTLRSWISGH----AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                      ...++++||+++++|..++...    ....+++.....++.|++.||.|||+   .+++|+||||+||++++++.++|+|
T Consensus        80 ~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~d  156 (273)
T cd05035          80 PKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSN---RNFIHRDLAARNCMLREDMTVCVAD  156 (273)
T ss_pred             cccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHh---CCeeccccchheEEECCCCeEEECC
Confidence            3578999999999999988532    22368889999999999999999999   7999999999999999999999999


Q ss_pred             CCchhhcccccc---cccccccccccCCCCC
Q 028725          176 YNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      ||+++.......   ......+..|+|||..
T Consensus       157 fg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  187 (273)
T cd05035         157 FGLSKKIYSGDYYRQGRIAKMPVKWIAIESL  187 (273)
T ss_pred             ccceeeccccccccccccccCCccccCHhhc
Confidence            999976544321   1122445679999964

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.95  E-value=3.3e-28  Score=181.75  Aligned_cols=173  Identities=23%  Similarity=0.304  Sum_probs=143.8

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEecC-----CcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeec
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLKN-----GTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECY   93 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~~-----~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   93 (205)
                      .....|+....||+|.||.||+|...+     .+.+|+|.++.++  ........+|+.+++.++|||++.+..+++.  
T Consensus        21 e~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~--   98 (438)
T KOG0666|consen   21 EDLFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLS--   98 (438)
T ss_pred             HHHHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhc--
Confidence            556779999999999999999997432     3368999997663  2345667889999999999999999998875  


Q ss_pred             ccCCCCCeEEEEEeecCCCcHHHhhccC---CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC--
Q 028725           94 FDDSSVSRIFLIFEYVPNGTLRSWISGH---AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN--  168 (205)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~--  168 (205)
                          .+...|+++||.++ +|.+.|...   ....++...+..|..||+.|+.|||+|   =++||||||+||+|.-+  
T Consensus        99 ----~d~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~N---WvlHRDLKPaNIlvmgdgp  170 (438)
T KOG0666|consen   99 ----HDKKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSN---WVLHRDLKPANILVMGDGP  170 (438)
T ss_pred             ----cCceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhh---heeeccCCcceEEEeccCC
Confidence                25689999999988 898888622   223578888999999999999999994   78999999999999866  


Q ss_pred             --CceeEcCCCchhhcccccc----cccccccccccCCCCC
Q 028725          169 --LVAKISSYNLPLLAENAEK----VGHVTPYSGSINPTNS  203 (205)
Q Consensus       169 --~~~~l~Dfg~a~~~~~~~~----~~~~~~~~~~~aPE~~  203 (205)
                        |.+||+|+|+++.+.++-.    ...++-|.+|.|||..
T Consensus       171 erG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELL  211 (438)
T KOG0666|consen  171 ERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELL  211 (438)
T ss_pred             ccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHh
Confidence              9999999999998887653    3456899999999963

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.95  E-value=5.8e-28  Score=194.49  Aligned_cols=166  Identities=18%  Similarity=0.404  Sum_probs=141.7

Q ss_pred             CCcceeeccCcceEEEEEEecC---Cc--EEEEEEeccc-CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           26 FDTSAFMGEGSKGQMYRGRLKN---GT--FIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~~~---~~--~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      -...++||.|-||.||.|.+.+   |.  .||+|+.+.+ .....+.|..|..+++.++||||++++|+|.+        
T Consensus       391 Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e--------  462 (974)
T KOG4257|consen  391 ITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVE--------  462 (974)
T ss_pred             ccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeec--------
Confidence            3455689999999999999643   33  5789988774 45668899999999999999999999999975        


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...|+|||.++-|.|+++++.+. ..++-.++..++.|++.+|.|||+   ..++||||.++||+|++..-+||+|||++
T Consensus       463 ~P~WivmEL~~~GELr~yLq~nk-~sL~l~tL~ly~~Qi~talaYLeS---krfVHRDIAaRNiLVsSp~CVKLaDFGLS  538 (974)
T KOG4257|consen  463 QPMWIVMELAPLGELREYLQQNK-DSLPLRTLTLYCYQICTALAYLES---KRFVHRDIAARNILVSSPQCVKLADFGLS  538 (974)
T ss_pred             cceeEEEecccchhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHHHh---hchhhhhhhhhheeecCcceeeecccchh
Confidence            57899999999999999999765 578888889999999999999999   89999999999999999999999999999


Q ss_pred             hhccccccccc--ccccccccCCCCC
Q 028725          180 LLAENAEKVGH--VTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~--~~~~~~~~aPE~~  203 (205)
                      +......-...  ..-..-|||||+.
T Consensus       539 R~~ed~~yYkaS~~kLPIKWmaPESI  564 (974)
T KOG4257|consen  539 RYLEDDAYYKASRGKLPIKWMAPESI  564 (974)
T ss_pred             hhccccchhhccccccceeecCcccc
Confidence            98887653322  2334569999973

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.95  E-value=4.1e-27  Score=186.91  Aligned_cols=174  Identities=16%  Similarity=0.204  Sum_probs=142.3

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc--CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK--KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ...++|+..+.||+|+||.||+|.. .+++.+|+|.+...  .......+.+|+.+++.++|+||+++.+.+..... ..
T Consensus        13 ~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-~~   91 (353)
T cd07850          13 TVLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKS-LE   91 (353)
T ss_pred             hhhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCC-cc
Confidence            4568899999999999999999994 46899999998643  23334567789999999999999999987653211 11


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      .....++++|++.+ +|.+.+..    .++...+..++.|++.||.|||.   .+++||||||+||++++++.++|+|||
T Consensus        92 ~~~~~~lv~e~~~~-~l~~~~~~----~l~~~~~~~~~~ql~~aL~~LH~---~gi~H~dlkp~Nil~~~~~~~kL~Dfg  163 (353)
T cd07850          92 EFQDVYLVMELMDA-NLCQVIQM----DLDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFG  163 (353)
T ss_pred             ccCcEEEEEeccCC-CHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEccCc
Confidence            22457999999965 88887754    37888899999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccccccccccccccCCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +++............++..|+|||..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~y~aPE~~  189 (353)
T cd07850         164 LARTAGTSFMMTPYVVTRYYRAPEVI  189 (353)
T ss_pred             cceeCCCCCCCCCCcccccccCHHHH
Confidence            99876654444445788899999964

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.95  E-value=3.6e-27  Score=179.28  Aligned_cols=160  Identities=19%  Similarity=0.290  Sum_probs=131.8

Q ss_pred             eeccCcceEEEEEEec---CCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEE
Q 028725           31 FMGEGSKGQMYRGRLK---NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (205)
Q Consensus        31 ~lg~g~~g~V~~~~~~---~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (205)
                      .||+|+||.||+|.++   ++..+++|+++....  ...+.+.+|+.+++.++||||+++.+.+.        ....+++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~--------~~~~~lv   73 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE--------AESWMLV   73 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc--------CCCcEEE
Confidence            5899999999999753   478899999865432  23567888999999999999999988763        2457899


Q ss_pred             EeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcccc
Q 028725          106 FEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENA  185 (205)
Q Consensus       106 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~  185 (205)
                      ||++++++|.+++....  .+++.....++.|++.||.|||+   .+++|+||||+||++++++.++|+|||+++.....
T Consensus        74 ~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~  148 (257)
T cd05116          74 MELAELGPLNKFLQKNK--HVTEKNITELVHQVSMGMKYLEE---TNFVHRDLAARNVLLVTQHYAKISDFGLSKALGAD  148 (257)
T ss_pred             EecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCEeecccchhhEEEcCCCeEEECCCccccccCCC
Confidence            99999999999987553  68899999999999999999999   79999999999999999999999999999766543


Q ss_pred             cc----cccccccccccCCCCC
Q 028725          186 EK----VGHVTPYSGSINPTNS  203 (205)
Q Consensus       186 ~~----~~~~~~~~~~~aPE~~  203 (205)
                      ..    .....++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~  170 (257)
T cd05116         149 ENYYKAKTHGKWPVKWYAPECM  170 (257)
T ss_pred             CCeeeecCCCCCCccccCHhHh
Confidence            22    1122345789999954

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.95  E-value=2.7e-27  Score=183.05  Aligned_cols=169  Identities=23%  Similarity=0.347  Sum_probs=136.7

Q ss_pred             CCCcceeeccCcceEEEEEEec------CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      +|++.+.||+|+||.||+|...      ....+++|.+.... ......+.+|+.+++.++||||+++.+.+..      
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~------   74 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQ------   74 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEec------
Confidence            5788999999999999999853      13468888886543 2345678899999999999999999998765      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCC----------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceee
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHA----------------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFS  155 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~----------------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h  155 (205)
                       .+..++++||+.+++|.+++....                      ...+++..++.++.|++.+|.|||+   .+++|
T Consensus        75 -~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~---~~ivH  150 (290)
T cd05045          75 -DGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAE---MKLVH  150 (290)
T ss_pred             -CCCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHH---CCeeh
Confidence             567899999999999999875321                      1247888899999999999999999   79999


Q ss_pred             cCCccccEEeCCCCceeEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          156 NNLKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       156 ~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      |||+|+||++++++.++|+|||+++.......   .....++..|+|||+.
T Consensus       151 ~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~  201 (290)
T cd05045         151 RDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESL  201 (290)
T ss_pred             hhhhhheEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHH
Confidence            99999999999999999999999975533221   1223456789999964

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.95  E-value=2e-27  Score=180.33  Aligned_cols=165  Identities=20%  Similarity=0.402  Sum_probs=138.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      .++|.+.+.||+|+||.||.+.. +++.+++|.++..  .....+.+|+.+++.++|||++++.+.+..        +..
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~--~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~--------~~~   73 (254)
T cd05083           5 LQKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCD--VTAQAFLEETAVMTKLHHKNLVRLLGVILH--------NGL   73 (254)
T ss_pred             HHHceeeeeeccCCCCceEeccc-CCCceEEEeecCc--chHHHHHHHHHHHHhCCCCCcCeEEEEEcC--------CCc
Confidence            46799999999999999999875 5788999998643  234678889999999999999999887653        347


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      ++++||+++++|.+++.......+++...+.++.|++.|+.|||+   .+++||||+|+||+++.++.++|+|||++...
T Consensus        74 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~  150 (254)
T cd05083          74 YIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLES---KKLVHRDLAARNILVSEDGVAKVSDFGLARVG  150 (254)
T ss_pred             EEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccCcceEEEcCCCcEEECCCccceec
Confidence            899999999999999986654568899999999999999999999   79999999999999999999999999998754


Q ss_pred             ccccccccccccccccCCCCC
Q 028725          183 ENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       183 ~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ....  .....+..|+|||..
T Consensus       151 ~~~~--~~~~~~~~y~~pe~~  169 (254)
T cd05083         151 SMGV--DNSKLPVKWTAPEAL  169 (254)
T ss_pred             cccC--CCCCCCceecCHHHh
Confidence            4321  122445679999964

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=7e-27  Score=176.84  Aligned_cols=167  Identities=24%  Similarity=0.458  Sum_probs=144.9

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +|++.+.||+|++|.||++... +++.+++|.+.....  .....+.+|+++++.++|+|++++.+.+..       .+.
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~   73 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIET-------SDS   73 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEe-------CCE
Confidence            5888999999999999999854 588999999976543  455678899999999999999999988765       568


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++|++++++|.+++....  .+++..++.++.|++.++.+||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        74 ~~~v~e~~~~~~L~~~~~~~~--~l~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~  148 (254)
T cd06627          74 LYIILEYAENGSLRQIIKKFG--PFPESLVAVYVYQVLQGLAYLHE---QGVIHRDIKAANILTTKDGVVKLADFGVATK  148 (254)
T ss_pred             EEEEEecCCCCcHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCHHHEEECCCCCEEEecccccee
Confidence            999999999999999987653  78999999999999999999999   7999999999999999999999999999976


Q ss_pred             cccccc-cccccccccccCCCCC
Q 028725          182 AENAEK-VGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~-~~~~~~~~~~~aPE~~  203 (205)
                      ...... .....++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~y~~pe~~  171 (254)
T cd06627         149 LNDVSKDDASVVGTPYWMAPEVI  171 (254)
T ss_pred             cCCCcccccccccchhhcCHhhh
Confidence            665443 2335788899999964

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.95  E-value=6.2e-27  Score=182.56  Aligned_cols=172  Identities=22%  Similarity=0.349  Sum_probs=140.8

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ..++|++.+.||+|+||.||+|.. .+|..||+|.++....  .......+|+.++++++|+|++++.+.+..     ..
T Consensus         5 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~   79 (309)
T cd07845           5 SVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVG-----KH   79 (309)
T ss_pred             cccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEec-----CC
Confidence            357899999999999999999995 4689999999875432  223456679999999999999999987754     22


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      .+..++|+|++.+ +|.+++.... ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||+
T Consensus        80 ~~~~~lv~e~~~~-~l~~~l~~~~-~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~kL~dfg~  154 (309)
T cd07845          80 LDSIFLVMEYCEQ-DLASLLDNMP-TPFSESQVKCLMLQLLRGLQYLHE---NFIIHRDLKVSNLLLTDKGCLKIADFGL  154 (309)
T ss_pred             CCeEEEEEecCCC-CHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEECccce
Confidence            3568999999965 8888877543 468899999999999999999999   7999999999999999999999999999


Q ss_pred             hhhccccc-ccccccccccccCCCCC
Q 028725          179 PLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      +....... ......++..|+|||..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~y~aPE~~  180 (309)
T cd07845         155 ARTYGLPAKPMTPKVVTLWYRAPELL  180 (309)
T ss_pred             eeecCCccCCCCcccccccccChhhh
Confidence            97665432 22223457789999964

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.95  E-value=9.5e-27  Score=181.24  Aligned_cols=178  Identities=15%  Similarity=0.302  Sum_probs=142.4

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeeccc-C
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD-D   96 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~-~   96 (205)
                      ...++|++.+.||+|+||.||+|... +++.+|+|.+....  ......+.+|+.++++++||||+++.+++...... .
T Consensus         9 ~~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   88 (310)
T cd07865           9 DEVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYN   88 (310)
T ss_pred             chhhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEeccccccc
Confidence            34578999999999999999999954 68899999986542  22334567899999999999999999987653322 1


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                      ......++++||+.+ ++.+.+.... ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+||
T Consensus        89 ~~~~~~~lv~e~~~~-~l~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dl~p~nil~~~~~~~kl~df  163 (310)
T cd07865          89 RYKGSFYLVFEFCEH-DLAGLLSNKN-VKFTLSEIKKVMKMLLNGLYYIHR---NKILHRDMKAANILITKDGILKLADF  163 (310)
T ss_pred             CCCceEEEEEcCCCc-CHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEECCCCcEEECcC
Confidence            224567999999965 8888776543 368899999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhccccccc-----ccccccccccCCCCC
Q 028725          177 NLPLLAENAEKV-----GHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~~~-----~~~~~~~~~~aPE~~  203 (205)
                      |++.........     ....++..|+|||..
T Consensus       164 g~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  195 (310)
T cd07865         164 GLARAFSLSKNSKPNRYTNRVVTLWYRPPELL  195 (310)
T ss_pred             CCcccccCCcccCCCCccCcccCccccCcHHh
Confidence            999766543221     223567889999963

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.95  E-value=1e-26  Score=178.99  Aligned_cols=167  Identities=19%  Similarity=0.341  Sum_probs=140.3

Q ss_pred             CCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           26 FDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      |++.+.||.|++|.||+|.. .+|..|++|++....  ......+.+|+..++.++|||++++.+.+.+       .+..
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~-------~~~~   73 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHS-------ENKL   73 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheecc-------CCeE
Confidence            67889999999999999995 469999999987553  2334567889999999999999999998865       5789


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      ++++||+. ++|.+++.......+++..+..++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||++...
T Consensus        74 ~iv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~---~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~  149 (283)
T cd07835          74 YLVFEFLD-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHS---HRVLHRDLKPQNLLIDREGALKLADFGLARAF  149 (283)
T ss_pred             EEEEeccC-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCHHHEEEcCCCcEEEeeccccccc
Confidence            99999995 589998876554568999999999999999999999   79999999999999999999999999999755


Q ss_pred             ccccc-cccccccccccCCCCC
Q 028725          183 ENAEK-VGHVTPYSGSINPTNS  203 (205)
Q Consensus       183 ~~~~~-~~~~~~~~~~~aPE~~  203 (205)
                      ..... .....++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~aPE~~  171 (283)
T cd07835         150 GVPVRTYTHEVVTLWYRAPEIL  171 (283)
T ss_pred             CCCccccCccccccCCCCCcee
Confidence            43222 1223568889999964

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.95  E-value=4.1e-27  Score=180.85  Aligned_cols=168  Identities=15%  Similarity=0.302  Sum_probs=143.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ...|+..+.||.|+||.||+|... ++..+++|.++... ......+.+|+.+++.+.|+||+++.+.+.+       ..
T Consensus         3 ~~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~   75 (277)
T cd06640           3 EELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-------GT   75 (277)
T ss_pred             HHhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-------CC
Confidence            356888899999999999999964 58899999987543 3445678889999999999999999998876       67


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++++||+++++|.+++...   .+++.....++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        76 ~~~lv~e~~~~~~L~~~i~~~---~l~~~~~~~~~~~l~~~l~~lh~---~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~  149 (277)
T cd06640          76 KLWIIMEYLGGGSALDLLRAG---PFDEFQIATMLKEILKGLDYLHS---EKKIHRDIKAANVLLSEQGDVKLADFGVAG  149 (277)
T ss_pred             EEEEEEecCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHh---CCccCcCCChhhEEEcCCCCEEEcccccce
Confidence            899999999999999988653   57888889999999999999999   799999999999999999999999999997


Q ss_pred             hccccc-ccccccccccccCCCCC
Q 028725          181 LAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ...... ......++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~y~apE~~  173 (277)
T cd06640         150 QLTDTQIKRNTFVGTPFWMAPEVI  173 (277)
T ss_pred             eccCCccccccccCcccccCHhHh
Confidence            655433 22334678899999974

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.95  E-value=5.8e-27  Score=177.76  Aligned_cols=169  Identities=20%  Similarity=0.352  Sum_probs=142.9

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +|.+.+.||.|+||.||++... +|..+++|.+....  ....+.+.+|+.+++.++|+|++++.+.+..       .+.
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~-------~~~   73 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQE-------NGR   73 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheecc-------CCe
Confidence            5888999999999999999954 58899999986542  2345677889999999999999999998765       668


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC-ceeEcCCCchh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-VAKISSYNLPL  180 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~-~~~l~Dfg~a~  180 (205)
                      .++++||+++++|.+++....+..+++.....++.|++.+|.|||+   .+++|+||+|+||++++++ .++|+|||.+.
T Consensus        74 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~  150 (257)
T cd08225          74 LFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHD---RKILHRDIKSQNIFLSKNGMVAKLGDFGIAR  150 (257)
T ss_pred             EEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEEcCCCCeEEecccccch
Confidence            9999999999999999876554568899999999999999999999   7999999999999999875 56999999997


Q ss_pred             hcccccc-cccccccccccCCCCC
Q 028725          181 LAENAEK-VGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~~aPE~~  203 (205)
                      ....... .....++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~ape~~  174 (257)
T cd08225         151 QLNDSMELAYTCVGTPYYLSPEIC  174 (257)
T ss_pred             hccCCcccccccCCCccccCHHHH
Confidence            6654332 2234688899999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.95  E-value=3.3e-27  Score=181.56  Aligned_cols=173  Identities=19%  Similarity=0.300  Sum_probs=141.8

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecC-----CcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKN-----GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~-----~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      ..++|++.+.||+|+||.||+|....     +..|++|.+.... ......+.+|+..++.++|+|++++.+.+...   
T Consensus         4 ~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~---   80 (280)
T cd05043           4 SRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIED---   80 (280)
T ss_pred             chhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecC---
Confidence            45789999999999999999999654     6788999886442 33456688899999999999999999987641   


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCC------CCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAW------QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL  169 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~------~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~  169 (205)
                         +...+++++++++++|.+++.....      ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++
T Consensus        81 ---~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~---~~i~H~di~p~nil~~~~~  154 (280)
T cd05043          81 ---GEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHK---RGVIHKDIAARNCVIDEEL  154 (280)
T ss_pred             ---CCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccCHhhEEEcCCC
Confidence               3567899999999999999864321      358899999999999999999999   7999999999999999999


Q ss_pred             ceeEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          170 VAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       170 ~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      .++|+|||+++.+.....   .....++..|+|||+.
T Consensus       155 ~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~  191 (280)
T cd05043         155 QVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESL  191 (280)
T ss_pred             cEEECCCCCcccccCCceEEeCCCCCcchhccCHHHH
Confidence            999999999976543321   1123456779999964

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.95  E-value=1e-26  Score=175.36  Aligned_cols=168  Identities=20%  Similarity=0.436  Sum_probs=147.2

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEE
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (205)
                      +|...+.||+|++|.||++... +++.+++|++..........+.+|+..++.++|++++++.+.+..       ....+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~~~   73 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLK-------KDELW   73 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEec-------CCeEE
Confidence            4788899999999999999965 688999999976655567788999999999999999999998865       56789


Q ss_pred             EEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcc
Q 028725          104 LIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  183 (205)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~  183 (205)
                      +++|++++++|.+++.... ..+++..+..++.|++.++.+||+   .+++|+||+|+||++++++.++|+|||.+....
T Consensus        74 l~~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~  149 (253)
T cd05122          74 IVMEFCSGGSLKDLLKSTN-QTLTESQIAYVCKELLKGLEYLHS---NGIIHRDIKAANILLTSDGEVKLIDFGLSAQLS  149 (253)
T ss_pred             EEEecCCCCcHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhc---CCEecCCCCHHHEEEccCCeEEEeecccccccc
Confidence            9999999999999987653 468999999999999999999999   799999999999999999999999999998776


Q ss_pred             cccccccccccccccCCCCC
Q 028725          184 NAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       184 ~~~~~~~~~~~~~~~aPE~~  203 (205)
                      .........++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~PE~~  169 (253)
T cd05122         150 DTKARNTMVGTPYWMAPEVI  169 (253)
T ss_pred             ccccccceecCCcccCHHHH
Confidence            65433446788999999964

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.95  E-value=2.5e-27  Score=186.46  Aligned_cols=163  Identities=16%  Similarity=0.147  Sum_probs=125.3

Q ss_pred             HHHHhcCCCcceeeccCcceEEEEEEec--CCcEEEEEEecccC-----CcCHHHHHHHHHHHhccCCCcccccccceee
Q 028725           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK--NGTFIAIRCLKMKK-----SHSTRNFMHHIELISKLRHCHLVSALGHCFE   91 (205)
Q Consensus        19 ~~~~~~~y~~~~~lg~g~~g~V~~~~~~--~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   91 (205)
                      .....++|.+.+.||+|+||.||+|.+.  ++..+|+|++....     ......+.+|+.+++.++|+|+++.+..   
T Consensus        13 ~~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~---   89 (365)
T PRK09188         13 IPALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA---   89 (365)
T ss_pred             cccccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE---
Confidence            4456788999999999999999999864  47778999875331     1124568899999999999999853321   


Q ss_pred             ecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCC-ccccEEeCCCCc
Q 028725           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNL-KITDILLDQNLV  170 (205)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dl-kp~nilv~~~~~  170 (205)
                             .+..+++|||++|++|... ..     ..   ...++.+++.+|.|||+   .||+|||| ||+||+++.++.
T Consensus        90 -------~~~~~LVmE~~~G~~L~~~-~~-----~~---~~~~~~~i~~aL~~lH~---~gIiHrDL~KP~NILv~~~~~  150 (365)
T PRK09188         90 -------TGKDGLVRGWTEGVPLHLA-RP-----HG---DPAWFRSAHRALRDLHR---AGITHNDLAKPQNWLMGPDGE  150 (365)
T ss_pred             -------cCCcEEEEEccCCCCHHHh-Cc-----cc---hHHHHHHHHHHHHHHHH---CCCeeCCCCCcceEEEcCCCC
Confidence                   1247999999999999732 11     11   13578899999999999   79999999 999999999999


Q ss_pred             eeEcCCCchhhccccc---------ccccccccccccCCCCC
Q 028725          171 AKISSYNLPLLAENAE---------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       171 ~~l~Dfg~a~~~~~~~---------~~~~~~~~~~~~aPE~~  203 (205)
                      ++|+|||+|+......         ......++..|+|||..
T Consensus       151 ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~  192 (365)
T PRK09188        151 AAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDAL  192 (365)
T ss_pred             EEEEECccceecccCcchhhhhhhhhhhhhhccCccCCcccC
Confidence            9999999998655432         11234677778888865

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.95  E-value=3.2e-27  Score=180.04  Aligned_cols=169  Identities=15%  Similarity=0.295  Sum_probs=144.5

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ++|+..+.||.|++|.||++... +++.+++|.+.... ......+.+|+..++.++||||+++.+.+..       ...
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-------~~~   73 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYN-------NGD   73 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeec-------CCE
Confidence            46888899999999999999965 58899999987653 3345678889999999999999999998876       578


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++|++++++|.+++.... ..+++..+..++.|++.+|.|||+.  .+++|+||+|+||++++++.++|+|||.+..
T Consensus        74 ~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~--~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~  150 (265)
T cd06605          74 ISICMEYMDGGSLDKILKEVQ-GRIPERILGKIAVAVLKGLTYLHEK--HKIIHRDVKPSNILVNSRGQIKLCDFGVSGQ  150 (265)
T ss_pred             EEEEEEecCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHcCC--CCeecCCCCHHHEEECCCCCEEEeecccchh
Confidence            999999999999999987653 4788999999999999999999993  4999999999999999999999999999876


Q ss_pred             cccccccccccccccccCCCCC
Q 028725          182 AENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ........ ..++..|+|||..
T Consensus       151 ~~~~~~~~-~~~~~~y~~PE~~  171 (265)
T cd06605         151 LVNSLAKT-FVGTSSYMAPERI  171 (265)
T ss_pred             hHHHHhhc-ccCChhccCHHHH
Confidence            65433222 6788899999964

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.95  E-value=8.4e-27  Score=179.32  Aligned_cols=171  Identities=20%  Similarity=0.365  Sum_probs=141.4

Q ss_pred             cCCCcceeeccCcceEEEEEEec-----CCcEEEEEEecccCCc-CHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-----NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-----~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .+|+..+.||+|+||.||++.+.     ++..+|+|.++..... ....+.+|+.+++.++|+||+++.+++..     .
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~-----~   78 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEK-----P   78 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeec-----C
Confidence            56788899999999999999853     3678999999755443 46778999999999999999999887754     2


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      .....++++||+++++|.+++.... ..+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||
T Consensus        79 ~~~~~~lv~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg  154 (284)
T cd05038          79 GGRSLRLIMEYLPSGSLRDYLQRHR-DQINLKRLLLFSSQICKGMDYLGS---QRYIHRDLAARNILVESEDLVKISDFG  154 (284)
T ss_pred             CCCceEEEEecCCCCCHHHHHHhCc-cccCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHhEEEcCCCCEEEcccc
Confidence            3457899999999999999997653 358899999999999999999999   799999999999999999999999999


Q ss_pred             chhhccccccc----ccccccccccCCCCC
Q 028725          178 LPLLAENAEKV----GHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~----~~~~~~~~~~aPE~~  203 (205)
                      ++.........    ....++..|+|||..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~  184 (284)
T cd05038         155 LAKVLPEDKDYYYVKEPGESPIFWYAPECL  184 (284)
T ss_pred             cccccccCCcceeccCCCCCcccccCcHHH
Confidence            99876633211    123445669999953

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.95  E-value=6.5e-27  Score=180.02  Aligned_cols=167  Identities=20%  Similarity=0.317  Sum_probs=141.2

Q ss_pred             CCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC-cCHHHHHHHHHHHhccC-CCcccccccceeeecccCCCCCeE
Q 028725           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      |.+.+.||.|++|.||+|... +++.+++|.+..... .......+|+..++.++ |+|++++.+.+..       ....
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~-------~~~~   73 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRE-------NDEL   73 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhc-------CCcE
Confidence            678899999999999999965 578899999865432 22334456889999998 9999999998866       6689


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      +++||++ +++|.+.+.......+++..+..++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||++...
T Consensus        74 ~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~---~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~  149 (283)
T cd07830          74 YFVFEYM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHK---HGFFHRDLKPENLLVSGPEVVKIADFGLAREI  149 (283)
T ss_pred             EEEEecC-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEEcCCCCEEEeecccceec
Confidence            9999999 7799988876544568999999999999999999999   79999999999999999999999999999877


Q ss_pred             ccccccccccccccccCCCCC
Q 028725          183 ENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       183 ~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ..........++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~aPE~~  170 (283)
T cd07830         150 RSRPPYTDYVSTRWYRAPEIL  170 (283)
T ss_pred             cCCCCcCCCCCcccccCceee
Confidence            655444456788899999964

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.95  E-value=8.6e-27  Score=176.90  Aligned_cols=169  Identities=20%  Similarity=0.364  Sum_probs=140.3

Q ss_pred             hcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      ..+|++.+.||+|+||.||++.+.++..+++|.+... ......+.+|+.+++.++|||++++.+.+..       ....
T Consensus         3 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~~   74 (256)
T cd05112           3 PSELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREG-AMSEEDFIEEAQVMMKLSHPKLVQLYGVCTE-------RSPI   74 (256)
T ss_pred             hhHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCC-CCCHHHHHHHHHHHHhCCCCCeeeEEEEEcc-------CCce
Confidence            3578889999999999999999766888999988643 3345678899999999999999999887755       5678


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      ++++||+.+++|.+++.... ..+++..++.++.+++.++.+||+   .+++|+||+|+||+++.++.++|+|||++...
T Consensus        75 ~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~  150 (256)
T cd05112          75 CLVFEFMEHGCLSDYLRAQR-GKFSQETLLGMCLDVCEGMAYLES---SNVIHRDLAARNCLVGENQVVKVSDFGMTRFV  150 (256)
T ss_pred             EEEEEcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHH---CCccccccccceEEEcCCCeEEECCCcceeec
Confidence            99999999999999887543 357889999999999999999999   79999999999999999999999999998755


Q ss_pred             ccccc--cccccccccccCCCCC
Q 028725          183 ENAEK--VGHVTPYSGSINPTNS  203 (205)
Q Consensus       183 ~~~~~--~~~~~~~~~~~aPE~~  203 (205)
                      .+...  ......+.+|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~aPe~~  173 (256)
T cd05112         151 LDDQYTSSTGTKFPVKWSSPEVF  173 (256)
T ss_pred             ccCcccccCCCccchhhcCHhHh
Confidence            43221  1122345689999964

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.95  E-value=9e-27  Score=181.90  Aligned_cols=169  Identities=24%  Similarity=0.350  Sum_probs=138.4

Q ss_pred             CCCcceeeccCcceEEEEEEec---CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK---NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~---~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      +|++.+.||+|++|.||+|...   ++..+|+|.+....   ......+.+|+.+++.++||||+++.+.+..     ..
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~   75 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLE-----HA   75 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeC-----CC
Confidence            4788999999999999999954   47899999997643   3445667889999999999999999998865     22


Q ss_pred             CCeEEEEEeecCCCcHHHhhccC---CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC----CCce
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGH---AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ----NLVA  171 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~----~~~~  171 (205)
                      ....++|+|++.+ ++.+++...   ....+++..++.++.|++.||.|||+   .+++|+||+|+||++++    ++.+
T Consensus        76 ~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~h~dlkp~Nil~~~~~~~~~~~  151 (316)
T cd07842          76 DKSVYLLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHS---NWVLHRDLKPANILVMGEGPERGVV  151 (316)
T ss_pred             CceEEEEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHh---CCEeeCCCCHHHEEEcCCCCccceE
Confidence            3679999999965 777766422   21367899999999999999999999   79999999999999999    8999


Q ss_pred             eEcCCCchhhcccccc----cccccccccccCCCC
Q 028725          172 KISSYNLPLLAENAEK----VGHVTPYSGSINPTN  202 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~----~~~~~~~~~~~aPE~  202 (205)
                      +|+|||++........    .....++..|+|||.
T Consensus       152 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  186 (316)
T cd07842         152 KIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPEL  186 (316)
T ss_pred             EECCCccccccCCCcccccccCCccccccccCHHH
Confidence            9999999986554322    233467889999995

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.95  E-value=5.3e-27  Score=178.16  Aligned_cols=163  Identities=22%  Similarity=0.371  Sum_probs=135.8

Q ss_pred             eeeccCcceEEEEEEecC--C--cEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRLKN--G--TFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~~--~--~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||+|++|.||+|.+.+  +  ..+++|.+..... ...+.+.+|+..+++++||||+++.+.+..        ...++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--------~~~~~   72 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT--------HPLMM   72 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC--------CeEEE
Confidence            468999999999999643  3  3689999976654 456778899999999999999999887643        57899


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ++|++++++|.+.+.......+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++.....
T Consensus        73 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~  149 (257)
T cd05040          73 VTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLES---KRFIHRDLAARNILLASDDKVKIGDFGLMRALPQ  149 (257)
T ss_pred             EEEecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHh---CCccccccCcccEEEecCCEEEeccccccccccc
Confidence            9999999999999976543468899999999999999999999   7999999999999999999999999999987654


Q ss_pred             cccc----ccccccccccCCCCC
Q 028725          185 AEKV----GHVTPYSGSINPTNS  203 (205)
Q Consensus       185 ~~~~----~~~~~~~~~~aPE~~  203 (205)
                      ....    ....++..|+|||+.
T Consensus       150 ~~~~~~~~~~~~~~~~y~~pE~~  172 (257)
T cd05040         150 NEDHYVMEEHLKVPFAWCAPESL  172 (257)
T ss_pred             cccceecccCCCCCceecCHHHh
Confidence            3211    123567789999963

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.95  E-value=1.1e-27  Score=191.17  Aligned_cols=168  Identities=16%  Similarity=0.212  Sum_probs=144.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--------CcCHHHHHHHHHHHhccC---CCccccccccee
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--------SHSTRNFMHHIELISKLR---HCHLVSALGHCF   90 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--------~~~~~~~~~e~~~l~~l~---~~~i~~~~~~~~   90 (205)
                      ..+|..+..+|.|+||.|++|.++ +...|++|.+.+++        ......+-.|+++|..+.   |+||++++++|.
T Consensus       560 ~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFE  639 (772)
T KOG1152|consen  560 FSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFE  639 (772)
T ss_pred             cccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheee
Confidence            456899999999999999999965 46789999997663        122233456999999997   999999999997


Q ss_pred             eecccCCCCCeEEEEEeec-CCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC
Q 028725           91 ECYFDDSSVSRIFLIFEYV-PNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL  169 (205)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~-~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~  169 (205)
                      +       ++..|++||.. ++.+|.++|...+  .+++.....|++|+..|+.+||+   ++|+|||||-+|++++.+|
T Consensus       640 d-------dd~yyl~te~hg~gIDLFd~IE~kp--~m~E~eAk~IFkQV~agi~hlh~---~~ivhrdikdenvivd~~g  707 (772)
T KOG1152|consen  640 D-------DDYYYLETEVHGEGIDLFDFIEFKP--RMDEPEAKLIFKQVVAGIKHLHD---QGIVHRDIKDENVIVDSNG  707 (772)
T ss_pred             c-------CCeeEEEecCCCCCcchhhhhhccC--ccchHHHHHHHHHHHhccccccc---cCceecccccccEEEecCC
Confidence            7       77899999876 4568999998775  78999999999999999999999   9999999999999999999


Q ss_pred             ceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          170 VAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       170 ~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      -+||+|||.|.+.+++. -....||.+|.|||..
T Consensus       708 ~~klidfgsaa~~ksgp-fd~f~gtv~~aapevl  740 (772)
T KOG1152|consen  708 FVKLIDFGSAAYTKSGP-FDVFVGTVDYAAPEVL  740 (772)
T ss_pred             eEEEeeccchhhhcCCC-cceeeeeccccchhhh
Confidence            99999999998777644 4457999999999964

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.95  E-value=9.5e-27  Score=178.83  Aligned_cols=167  Identities=16%  Similarity=0.321  Sum_probs=141.3

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +-|+..+.||.|+||.||+|.. .++..+|+|.+.... ......+.+|+..++.++||||+++.+.+..       +..
T Consensus         4 ~~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-------~~~   76 (277)
T cd06641           4 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-------DTK   76 (277)
T ss_pred             HhhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEe-------CCe
Confidence            4577889999999999999985 468899999986543 2344678889999999999999999998866       678


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++|+||+++++|.+++...   .+++..+..++.+++.++.+||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        77 ~~lv~e~~~~~~l~~~i~~~---~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~  150 (277)
T cd06641          77 LWIIMEYLGGGSALDLLEPG---PLDETQIATILREILKGLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAGQ  150 (277)
T ss_pred             EEEEEEeCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHcc---CCeecCCCCHHhEEECCCCCEEEeeccccee
Confidence            99999999999999988653   57889999999999999999999   7999999999999999999999999999876


Q ss_pred             ccccc-ccccccccccccCCCCC
Q 028725          182 AENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ..... ......++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~y~~PE~~  173 (277)
T cd06641         151 LTDTQIKRNTFVGTPFWMAPEVI  173 (277)
T ss_pred             cccchhhhccccCCccccChhhh
Confidence            55432 22234678899999974

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.95  E-value=5e-27  Score=180.12  Aligned_cols=168  Identities=20%  Similarity=0.353  Sum_probs=143.0

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccC-CCcccccccceeeecccCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ++|.+.+.||+|++|.||++... +++.+++|++....   ......+.+|..+++++. ||||+++.+.+..       
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~-------   73 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQD-------   73 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcC-------
Confidence            47899999999999999999954 68999999997532   233466788999999998 9999999998765       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....+++||++.+++|.+++....  .+++..++.++.|++.+|.+||+   .+++|+||+|+||++++++.++|+|||+
T Consensus        74 ~~~~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~i~~ql~~~l~~Lh~---~~~~H~dl~~~ni~i~~~~~~~l~df~~  148 (280)
T cd05581          74 EENLYFVLEYAPNGELLQYIRKYG--SLDEKCTRFYAAEILLALEYLHS---KGIIHRDLKPENILLDKDMHIKITDFGT  148 (280)
T ss_pred             CceEEEEEcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEecCCcc
Confidence            668999999999999999998654  68999999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccccc---------------------cccccccccccCCCCC
Q 028725          179 PLLAENAEK---------------------VGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~---------------------~~~~~~~~~~~aPE~~  203 (205)
                      +........                     .....++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~  194 (280)
T cd05581         149 AKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELL  194 (280)
T ss_pred             ccccCCccccccCCCCCccccccccccccccccccCCccccCHHHh
Confidence            876554321                     1223577889999964

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.95  E-value=9e-27  Score=179.89  Aligned_cols=171  Identities=20%  Similarity=0.294  Sum_probs=142.0

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ++|...+.||.|++|.||++.. .+++.+++|.+..... .....+.+|+++++.++||||+++.+.+..     .....
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~~~   75 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLD-----ESSSS   75 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEc-----cCCCe
Confidence            4688899999999999999996 4588999999975432 345678899999999999999999988764     22457


Q ss_pred             EEEEEeecCCCcHHHhhcc--CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          102 IFLIFEYVPNGTLRSWISG--HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ++++|||+++++|.+++..  .....++...+..++.|++.+|.|||+   .+++|+||+|+||+++.++.++|+|||++
T Consensus        76 ~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~---~~i~H~dl~~~nil~~~~~~~~l~dfg~~  152 (287)
T cd06621          76 IGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHS---RKIIHRDIKPSNILLTRKGQVKLCDFGVS  152 (287)
T ss_pred             EEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEecCCeEEEeecccc
Confidence            8999999999999988653  222467888999999999999999999   79999999999999999999999999998


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ........ ....++..|+|||..
T Consensus       153 ~~~~~~~~-~~~~~~~~y~~pE~~  175 (287)
T cd06621         153 GELVNSLA-GTFTGTSFYMAPERI  175 (287)
T ss_pred             cccccccc-ccccCCccccCHHHh
Confidence            75554332 234678889999964

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PTZ00284 protein kinase; Provisional

Probab=99.95  E-value=4.5e-27  Score=193.05  Aligned_cols=170  Identities=15%  Similarity=0.250  Sum_probs=131.4

Q ss_pred             HHHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCC------cccccccceeee
Q 028725           20 EEATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHC------HLVSALGHCFEC   92 (205)
Q Consensus        20 ~~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~------~i~~~~~~~~~~   92 (205)
                      ....++|++.+.||+|+||.||+|.. .+++.||+|+++... ........|+.++..++|.      +++.+..++.. 
T Consensus       125 ~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~-  202 (467)
T PTZ00284        125 DVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQN-  202 (467)
T ss_pred             ccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch-hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEc-
Confidence            34467899999999999999999995 458889999996432 2334455677777776554      46666655533 


Q ss_pred             cccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC---
Q 028725           93 YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL---  169 (205)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~---  169 (205)
                           .....+++++++ +++|.+++....  .+++..+..++.|++.||.|||..  .+|+||||||+||+++.++   
T Consensus       203 -----~~~~~~iv~~~~-g~~l~~~l~~~~--~l~~~~~~~i~~qi~~aL~yLH~~--~gIiHrDlKP~NILl~~~~~~~  272 (467)
T PTZ00284        203 -----ETGHMCIVMPKY-GPCLLDWIMKHG--PFSHRHLAQIIFQTGVALDYFHTE--LHLMHTDLKPENILMETSDTVV  272 (467)
T ss_pred             -----CCceEEEEEecc-CCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhc--CCeecCCCCHHHEEEecCCccc
Confidence                 235688999988 668888887553  688999999999999999999962  4999999999999998765   


Q ss_pred             -------------ceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          170 -------------VAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       170 -------------~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                                   .+||+|||.+.....  ......+|..|+|||..
T Consensus       273 ~~~~~~~~~~~~~~vkl~DfG~~~~~~~--~~~~~~gt~~Y~APE~~  317 (467)
T PTZ00284        273 DPVTNRALPPDPCRVRICDLGGCCDERH--SRTAIVSTRHYRSPEVV  317 (467)
T ss_pred             ccccccccCCCCceEEECCCCccccCcc--ccccccCCccccCcHHh
Confidence                         499999998764332  23346899999999974

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.95  E-value=1.3e-26  Score=178.42  Aligned_cols=168  Identities=20%  Similarity=0.359  Sum_probs=140.3

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      +|++.+.||.|++|.||+|... +|..+++|.++... ......+.+|+.+++.++|+|++++.+.+..       .+..
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-------~~~~   73 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHT-------ENKL   73 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEee-------CCcE
Confidence            5889999999999999999964 58899999997653 2345567789999999999999999998876       5678


Q ss_pred             EEEEeecCCCcHHHhhccCC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          103 FLIFEYVPNGTLRSWISGHA-WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      ++++||+++ +|.+++.... ...+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        74 ~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~  149 (284)
T cd07836          74 MLVFEYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHE---NRVLHRDLKPQNLLINKRGELKLADFGLARA  149 (284)
T ss_pred             EEEEecCCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEECCCCcEEEeecchhhh
Confidence            999999975 8888876432 2358999999999999999999999   7999999999999999999999999999975


Q ss_pred             cccccc-cccccccccccCCCCC
Q 028725          182 AENAEK-VGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~-~~~~~~~~~~~aPE~~  203 (205)
                      ...... .....++..|++||..
T Consensus       150 ~~~~~~~~~~~~~~~~y~~PE~~  172 (284)
T cd07836         150 FGIPVNTFSNEVVTLWYRAPDVL  172 (284)
T ss_pred             hcCCccccccccccccccChHHh
Confidence            544322 2234668889999963

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.95  E-value=7.9e-27  Score=178.51  Aligned_cols=163  Identities=19%  Similarity=0.335  Sum_probs=129.8

Q ss_pred             eeccCcceEEEEEEecCC---cEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEE
Q 028725           31 FMGEGSKGQMYRGRLKNG---TFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIF  106 (205)
Q Consensus        31 ~lg~g~~g~V~~~~~~~~---~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~  106 (205)
                      .||+|+||.||++...++   ..+++|.++... ....+.+.+|+..++.++||||+++.+.+..       ....+++|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~-------~~~~~lv~   74 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVE-------AIPYLLVF   74 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecC-------CCccEEEE
Confidence            589999999999985433   345666665443 3345678899999999999999999998865       56789999


Q ss_pred             eecCCCcHHHhhccCC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          107 EYVPNGTLRSWISGHA--WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       107 e~~~~~~L~~~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ||+++++|.+++....  ....+...+..++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++.....
T Consensus        75 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~---~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~  151 (268)
T cd05086          75 EYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHK---HNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYK  151 (268)
T ss_pred             ecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHH---CCeeccCCccceEEEcCCccEEecccccccccCc
Confidence            9999999999987532  1345667788899999999999999   7999999999999999999999999999854322


Q ss_pred             cc---ccccccccccccCCCCC
Q 028725          185 AE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 ~~---~~~~~~~~~~~~aPE~~  203 (205)
                      ..   ......++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~y~aPE~~  173 (268)
T cd05086         152 EDYIETEDDKCVPLRWLAPELV  173 (268)
T ss_pred             chhhhcccCCcCcccccCchhc
Confidence            11   12234678889999964

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.95  E-value=8e-27  Score=178.27  Aligned_cols=170  Identities=22%  Similarity=0.393  Sum_probs=138.8

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCc---EEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGT---FIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~---~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .++|+..+.||+|++|.||+|... ++.   .+++|.++... ......+.+|+.+++.++|||++++.+.+..      
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~------   77 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTK------   77 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEcc------
Confidence            467889999999999999999964 333   68899886542 3335678889999999999999999998765      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ....+++||++++++|.+++.... ..+++.....++.|++.|+.|||+   .+++|+||||+||++++++.++|+|||
T Consensus        78 -~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~dlkp~Nili~~~~~~kl~dfg  152 (268)
T cd05063          78 -FKPAMIITEYMENGALDKYLRDHD-GEFSSYQLVGMLRGIAAGMKYLSD---MNYVHRDLAARNILVNSNLECKVSDFG  152 (268)
T ss_pred             -CCCcEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchhhEEEcCCCcEEECCCc
Confidence             567899999999999999987543 468889999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccccc----cccccccccCCCCC
Q 028725          178 LPLLAENAEKVG----HVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~~----~~~~~~~~~aPE~~  203 (205)
                      ++..........    ....+..|+|||..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  182 (268)
T cd05063         153 LSRVLEDDPEGTYTTSGGKIPIRWTAPEAI  182 (268)
T ss_pred             cceecccccccceeccCCCcCceecCHHHh
Confidence            997665432211    11234579999963

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.95  E-value=9.6e-27  Score=183.46  Aligned_cols=172  Identities=12%  Similarity=0.227  Sum_probs=142.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ..+|++.+.||+|++|.||+|.. .+++.|++|++....  ......+.+|+.+++.++||||+++.+.+....   ...
T Consensus         4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~---~~~   80 (334)
T cd07855           4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPG---ADF   80 (334)
T ss_pred             hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccC---CCC
Confidence            47899999999999999999994 469999999987542  234566778999999999999999988765321   234


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++++||+. ++|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||++++++.++|+|||++
T Consensus        81 ~~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~dfg~~  154 (334)
T cd07855          81 KDVYVVMDLME-SDLHHIIHSDQ--PLTEEHIRYFLYQLLRGLKYIHS---ANVIHRDLKPSNLLVNEDCELRIGDFGMA  154 (334)
T ss_pred             ceEEEEEehhh-hhHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCcEEecccccc
Confidence            57899999995 58998886553  58999999999999999999999   79999999999999999999999999999


Q ss_pred             hhccccccc-----ccccccccccCCCCC
Q 028725          180 LLAENAEKV-----GHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~-----~~~~~~~~~~aPE~~  203 (205)
                      .........     ....++..|+|||..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  183 (334)
T cd07855         155 RGLSSSPTEHKYFMTEYVATRWYRAPELL  183 (334)
T ss_pred             eeecccCcCCCcccccccccccccChHHh
Confidence            765543211     234788899999963

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.95  E-value=1.6e-26  Score=175.03  Aligned_cols=169  Identities=21%  Similarity=0.365  Sum_probs=146.5

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +|...+.||+|++|.||+|... +++.+++|++.....  ...+.+.+|+..+++++|+||+++.+.+...     ....
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-----~~~~   75 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDE-----EKNT   75 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecC-----CCCe
Confidence            4788899999999999999965 688999999975542  4567788999999999999999999888651     1267


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++|++++++|.+++....  .+++..++.++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||.+..
T Consensus        76 ~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~---~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~  150 (260)
T cd06606          76 LNIFLEYVSGGSLSSLLKKFG--KLPEPVIRKYTRQILEGLAYLHS---NGIVHRDIKGANILVDSDGVVKLADFGCAKR  150 (260)
T ss_pred             EEEEEEecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEcCCCCEEEcccccEEe
Confidence            899999999999999988654  78999999999999999999999   7999999999999999999999999999987


Q ss_pred             cccccc---cccccccccccCCCCC
Q 028725          182 AENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      ......   .....++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~y~~pE~~  175 (260)
T cd06606         151 LGDIETGEGTGSVRGTPYWMAPEVI  175 (260)
T ss_pred             cccccccccccCCCCCccccCHhhh
Confidence            776543   3446788899999964

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.95  E-value=1e-26  Score=177.06  Aligned_cols=164  Identities=20%  Similarity=0.358  Sum_probs=130.9

Q ss_pred             eeeccCcceEEEEEEec----CCcEEEEEEeccc-CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRLK----NGTFIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~----~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||+|+||.||+|...    +...+++|.+... .......+.+|+.+++.++|||++++.+.+..      .+...++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------~~~~~~l   74 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLP------SEGSPLV   74 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeec------CCCCcEE
Confidence            46899999999999853    2457899988543 23345678889999999999999999987653      1345789


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ++||+.+++|.+++.... ...++.....++.|++.|+.|||+   .+++|+||||+||++++++.++|+|||+++....
T Consensus        75 v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~  150 (262)
T cd05058          75 VLPYMKHGDLRNFIRSET-HNPTVKDLIGFGLQVAKGMEYLAS---KKFVHRDLAARNCMLDESFTVKVADFGLARDIYD  150 (262)
T ss_pred             EEecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHh---CCccccccCcceEEEcCCCcEEECCccccccccC
Confidence            999999999999987543 346677788899999999999999   7999999999999999999999999999975543


Q ss_pred             cc-----ccccccccccccCCCCC
Q 028725          185 AE-----KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 ~~-----~~~~~~~~~~~~aPE~~  203 (205)
                      ..     ......++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~y~aPE~~  174 (262)
T cd05058         151 KEYYSVHNHTGAKLPVKWMALESL  174 (262)
T ss_pred             CcceeecccccCcCCccccChhHh
Confidence            21     11223556789999964

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.95  E-value=1.5e-26  Score=178.40  Aligned_cols=171  Identities=18%  Similarity=0.366  Sum_probs=147.3

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ...++|+..+.+|+|++|.||++... ++..+++|+++.... ....+.+|++.++.++|+|++++.+.+..       .
T Consensus        16 ~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~   87 (286)
T cd06614          16 DPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLV-------G   87 (286)
T ss_pred             CccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEE-------C
Confidence            55678999999999999999999965 688999999975544 56678899999999999999999998876       5


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++++||+++++|.+++.... ..+++..++.++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||++
T Consensus        88 ~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~lH~---~gi~H~dl~p~ni~i~~~~~~~l~d~~~~  163 (286)
T cd06614          88 DELWVVMEYMDGGSLTDIITQNF-VRMNEPQIAYVCREVLQGLEYLHS---QNVIHRDIKSDNILLSKDGSVKLADFGFA  163 (286)
T ss_pred             CEEEEEEeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCChhhEEEcCCCCEEECccchh
Confidence            78999999999999999998653 468899999999999999999999   79999999999999999999999999998


Q ss_pred             hhccccc-ccccccccccccCCCCC
Q 028725          180 LLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ....... ......++..|+|||..
T Consensus       164 ~~~~~~~~~~~~~~~~~~y~~PE~~  188 (286)
T cd06614         164 AQLTKEKSKRNSVVGTPYWMAPEVI  188 (286)
T ss_pred             hhhccchhhhccccCCcccCCHhHh
Confidence            7655432 22334678899999964

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.95  E-value=1.1e-26  Score=177.97  Aligned_cols=164  Identities=27%  Similarity=0.421  Sum_probs=130.7

Q ss_pred             eeeccCcceEEEEEEec-CCc--EEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRLK-NGT--FIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~-~~~--~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||+|+||.||+|... ++.  .+++|.++... ......+.+|+.++..+ +||||+++.+.+..       .+..++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~-------~~~~~l   73 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH-------RGYLYL   73 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEec-------CCCceE
Confidence            35899999999999964 343  46888886432 23446788899999999 79999999998865       567899


Q ss_pred             EEeecCCCcHHHhhccCC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc
Q 028725          105 IFEYVPNGTLRSWISGHA--------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  170 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~--------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~  170 (205)
                      +|||+++++|.+++....              ...+++..+..++.|++.||.|||+   .+++|+||||+||++++++.
T Consensus        74 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~---~~i~H~dikp~nili~~~~~  150 (270)
T cd05047          74 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYV  150 (270)
T ss_pred             EEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccccceEEEcCCCe
Confidence            999999999999986432              1247888999999999999999999   79999999999999999999


Q ss_pred             eeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          171 AKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       171 ~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ++|+|||++..............+..|+|||+.
T Consensus       151 ~kl~dfgl~~~~~~~~~~~~~~~~~~y~apE~~  183 (270)
T cd05047         151 AKIADFGLSRGQEVYVKKTMGRLPVRWMAIESL  183 (270)
T ss_pred             EEECCCCCccccchhhhccCCCCccccCChHHH
Confidence            999999998643322222223345679999964

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.95  E-value=6.1e-27  Score=182.23  Aligned_cols=168  Identities=21%  Similarity=0.385  Sum_probs=136.1

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCc----EEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGT----FIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~----~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ++|+..+.||+|+||.||+|.+. ++.    .+++|.+..... .....+.+|+.+++.++||||+++++.+..      
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~------   80 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLS------   80 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcC------
Confidence            56888999999999999999853 444    578888864432 223467889999999999999999998754      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                        ...++++|++++|+|.+++.... ..+++..++.++.|++.||.|||+   .+++|+||||+||++++++.++|+|||
T Consensus        81 --~~~~~v~e~~~~g~l~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~dikp~Nill~~~~~~kL~Dfg  154 (303)
T cd05110          81 --PTIQLVTQLMPHGCLLDYVHEHK-DNIGSQLLLNWCVQIAKGMMYLEE---RRLVHRDLAARNVLVKSPNHVKITDFG  154 (303)
T ss_pred             --CCceeeehhcCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHhh---cCeeccccccceeeecCCCceEEcccc
Confidence              23578999999999999987543 357888999999999999999999   799999999999999999999999999


Q ss_pred             chhhccccccc---ccccccccccCCCCC
Q 028725          178 LPLLAENAEKV---GHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~---~~~~~~~~~~aPE~~  203 (205)
                      +++........   ....++..|+|||..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  183 (303)
T cd05110         155 LARLLEGDEKEYNADGGKMPIKWMALECI  183 (303)
T ss_pred             ccccccCcccccccCCCccccccCCHHHh
Confidence            99866543321   123456789999964

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.95  E-value=9e-27  Score=180.62  Aligned_cols=170  Identities=18%  Similarity=0.364  Sum_probs=136.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-----------------CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-----------------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVS   84 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-----------------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~   84 (205)
                      .++|++.+.||+|+||.||++...                 ++..+++|++.... ......+.+|+.+++.++|+||++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~   83 (296)
T cd05095           4 RKRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIR   83 (296)
T ss_pred             hhhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcce
Confidence            357999999999999999998532                 23468899886543 233467889999999999999999


Q ss_pred             cccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCC---------CCCCHHHHHHHHHHHHHHHHHhhcCCCCceee
Q 028725           85 ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAW---------QSLTWTQRISAAIGVARGIQFLHTGIVPGVFS  155 (205)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~---------~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h  155 (205)
                      +.+.+..       ....++++|++++++|.+++.....         ..+++..++.++.|++.||.|||+   .+++|
T Consensus        84 ~~~~~~~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~---~~i~H  153 (296)
T cd05095          84 LLAVCIT-------SDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSS---LNFVH  153 (296)
T ss_pred             EEEEEec-------CCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHH---CCeec
Confidence            9998765       5578999999999999999865321         236678899999999999999999   79999


Q ss_pred             cCCccccEEeCCCCceeEcCCCchhhcccccc---cccccccccccCCCC
Q 028725          156 NNLKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTN  202 (205)
Q Consensus       156 ~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~  202 (205)
                      +||||+||++++++.++|+|||+++.......   ......+..|+|||.
T Consensus       154 ~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~  203 (296)
T cd05095         154 RDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWES  203 (296)
T ss_pred             ccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHH
Confidence            99999999999999999999999975543221   111233567999984

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.95  E-value=1.4e-26  Score=182.70  Aligned_cols=171  Identities=18%  Similarity=0.316  Sum_probs=139.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|++.+.||+|++|.||+|.. .+++.|++|+++... ......+.+|+.+++.++|+||+++.+.+.....  ....
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~--~~~~   81 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSF--ESFN   81 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccc--cccc
Confidence            57899999999999999999994 468999999986432 3345567889999999999999999987654221  1234


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++++|++.+ ++.+.+...   .+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||++.
T Consensus        82 ~~~lv~e~~~~-~l~~~~~~~---~l~~~~~~~i~~ql~~aL~~LH~---~~ivH~dlkp~Nill~~~~~~kl~dfg~~~  154 (336)
T cd07849          82 DVYIVQELMET-DLYKLIKTQ---HLSNDHIQYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTNCDLKICDFGLAR  154 (336)
T ss_pred             eEEEEehhccc-CHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEECCCCCEEECccccee
Confidence            68999999965 888777543   68899999999999999999999   799999999999999999999999999997


Q ss_pred             hccccccc----ccccccccccCCCC
Q 028725          181 LAENAEKV----GHVTPYSGSINPTN  202 (205)
Q Consensus       181 ~~~~~~~~----~~~~~~~~~~aPE~  202 (205)
                      ........    ....++..|+|||.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~y~aPE~  180 (336)
T cd07849         155 IADPEHDHTGFLTEYVATRWYRAPEI  180 (336)
T ss_pred             eccccccccCCcCCcCcCCCccChHH
Confidence            65443211    22467889999996

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.95  E-value=1.9e-28  Score=209.85  Aligned_cols=173  Identities=19%  Similarity=0.356  Sum_probs=149.4

Q ss_pred             HHHhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           20 EEATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        20 ~~~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      ....-+|+-+..||.|.||.||.|. ..+|.-.|+|-++...  ......+.+|..++..+.|||+++++|+-.+     
T Consensus      1231 snV~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvH----- 1305 (1509)
T KOG4645|consen 1231 SNVTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVH----- 1305 (1509)
T ss_pred             ccceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeec-----
Confidence            3445679999999999999999999 5568889999886553  3455678899999999999999999999887     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                        .+..+|.||||.+|+|.+++....  ..++.....+..|++.|+.|||+   .||+||||||+||+++.+|.+|++||
T Consensus      1306 --Rekv~IFMEyC~~GsLa~ll~~gr--i~dE~vt~vyt~qll~gla~LH~---~gIVHRDIK~aNI~Ld~~g~iK~~DF 1378 (1509)
T KOG4645|consen 1306 --REKVYIFMEYCEGGSLASLLEHGR--IEDEMVTRVYTKQLLEGLAYLHE---HGIVHRDIKPANILLDFNGLIKYGDF 1378 (1509)
T ss_pred             --HHHHHHHHHHhccCcHHHHHHhcc--hhhhhHHHHHHHHHHHHHHHHHh---cCceecCCCccceeeecCCcEEeecc
Confidence              678899999999999999998654  67777778889999999999999   79999999999999999999999999


Q ss_pred             Cchhhccccc-----ccccccccccccCCCCCC
Q 028725          177 NLPLLAENAE-----KVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       177 g~a~~~~~~~-----~~~~~~~~~~~~aPE~~~  204 (205)
                      |.|..+.+..     ..+...||+-|||||...
T Consensus      1379 Gsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit 1411 (1509)
T KOG4645|consen 1379 GSAVKIKNNAQTMPGELQSMMGTPMYMAPEVIT 1411 (1509)
T ss_pred             cceeEecCchhcCCHHHHhhcCCchhcCchhhc
Confidence            9997666543     445579999999999764

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.95  E-value=1.4e-26  Score=177.02  Aligned_cols=170  Identities=17%  Similarity=0.323  Sum_probs=139.7

Q ss_pred             CCCcceeeccCcceEEEEEEecC--CcEEEEEEecccC----------CcCHHHHHHHHHHHhc-cCCCcccccccceee
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLKN--GTFIAIRCLKMKK----------SHSTRNFMHHIELISK-LRHCHLVSALGHCFE   91 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~~--~~~vaiK~~~~~~----------~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~   91 (205)
                      +|++.+.||+|+||.||++....  ++.+++|.+....          ......+.+|+.++.. ++||||+++.+.+..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            48889999999999999999654  6789999885431          1223456678887764 789999999998865


Q ss_pred             ecccCCCCCeEEEEEeecCCCcHHHhhcc--CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC
Q 028725           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISG--HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL  169 (205)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~  169 (205)
                             .+..++++||+++++|.+++..  .....+++..++.++.|++.+|.|||+.  .+++|+||+|+||++++++
T Consensus        81 -------~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~--~~i~H~dl~~~nil~~~~~  151 (269)
T cd08528          81 -------NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKE--KRIVHRDLTPNNIMLGEDD  151 (269)
T ss_pred             -------CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccC--CceeecCCCHHHEEECCCC
Confidence                   6789999999999999998753  2224688999999999999999999963  5899999999999999999


Q ss_pred             ceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          170 VAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       170 ~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      .++|+|||++.............++..|+|||..
T Consensus       152 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~Pe~~  185 (269)
T cd08528         152 KVTITDFGLAKQKQPESKLTSVVGTILYSCPEIV  185 (269)
T ss_pred             cEEEecccceeecccccccccccCcccCcChhhh
Confidence            9999999999876655444456788899999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.95  E-value=1.7e-26  Score=179.40  Aligned_cols=178  Identities=19%  Similarity=0.303  Sum_probs=142.0

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecc---
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYF---   94 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~---   94 (205)
                      ...++|++.+.||.|++|.||+|... +++.|++|.++...  ......+.+|+.+++.++|||++++.+.+.+...   
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~   83 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD   83 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence            34678999999999999999999965 58899999997543  2334567789999999999999999988765220   


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEc
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  174 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~  174 (205)
                      ........++++||+++ ++.+.+.... ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+
T Consensus        84 ~~~~~~~~~lv~e~~~~-~l~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~---~~i~H~dl~p~nili~~~~~~kl~  158 (302)
T cd07864          84 FKKDKGAFYLVFEYMDH-DLMGLLESGL-VHFSEDHIKSFMKQLLEGLNYCHK---KNFLHRDIKCSNILLNNKGQIKLA  158 (302)
T ss_pred             ccccCCcEEEEEcccCc-cHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCcEEeC
Confidence            00113378999999976 7777766542 468899999999999999999999   799999999999999999999999


Q ss_pred             CCCchhhcccccc--cccccccccccCCCCC
Q 028725          175 SYNLPLLAENAEK--VGHVTPYSGSINPTNS  203 (205)
Q Consensus       175 Dfg~a~~~~~~~~--~~~~~~~~~~~aPE~~  203 (205)
                      |||++........  .....++..|+|||..
T Consensus       159 dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~  189 (302)
T cd07864         159 DFGLARLYNSEESRPYTNKVITLWYRPPELL  189 (302)
T ss_pred             cccccccccCCcccccccceeccCccChHHh
Confidence            9999986654332  1223557789999964

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.95  E-value=1.7e-26  Score=179.96  Aligned_cols=167  Identities=18%  Similarity=0.302  Sum_probs=139.8

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCc---CHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH---STRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ....|+..+.||+|++|.||+|... +++.|++|.+......   ....+.+|+.+++.++|||++++.+.+..      
T Consensus        13 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~------   86 (307)
T cd06607          13 PEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLR------   86 (307)
T ss_pred             cchhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEe------
Confidence            3466999999999999999999954 6889999998654322   23567889999999999999999999876      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ....++++||+.+ ++.+++.... ..+++..+..++.|++.+|.|||+   .+++|+||+|+||+++.++.++|+|||
T Consensus        87 -~~~~~lv~e~~~g-~l~~~~~~~~-~~l~~~~~~~~~~ql~~~L~~LH~---~~i~H~dl~p~nIl~~~~~~~kL~dfg  160 (307)
T cd06607          87 -EHTAWLVMEYCLG-SASDILEVHK-KPLQEVEIAAICHGALQGLAYLHS---HERIHRDIKAGNILLTEPGTVKLADFG  160 (307)
T ss_pred             -CCeEEEEHHhhCC-CHHHHHHHcc-cCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcccEEECCCCCEEEeecC
Confidence             5678999999975 7777765332 368899999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccccccccccccccCCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ++......   ....++..|+|||..
T Consensus       161 ~~~~~~~~---~~~~~~~~y~aPE~~  183 (307)
T cd06607         161 SASLVSPA---NSFVGTPYWMAPEVI  183 (307)
T ss_pred             cceecCCC---CCccCCccccCceee
Confidence            98765533   234678899999963

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.95  E-value=2.4e-27  Score=180.38  Aligned_cols=160  Identities=19%  Similarity=0.327  Sum_probs=131.9

Q ss_pred             eeeccCcceEEEEEEecC--------CcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           30 AFMGEGSKGQMYRGRLKN--------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~~--------~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +.||.|+||.||+|....        ...+++|.+........+.+.+|..+++.++|||++++.+.+..       ...
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~-------~~~   73 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVC-------GDE   73 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEe-------CCC
Confidence            468999999999998532        23478888765544556678889999999999999999998876       456


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc--------eeE
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV--------AKI  173 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~--------~~l  173 (205)
                      .+++|||+++++|.+++.... ..+++.....++.|++.||.|||+   .+++||||||+||++++++.        +++
T Consensus        74 ~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~---~~iiH~dlkp~nili~~~~~~~~~~~~~~~l  149 (258)
T cd05078          74 SIMVQEYVKFGSLDTYLKKNK-NLINISWKLEVAKQLAWALHFLED---KGLTHGNVCAKNVLLIREEDRKTGNPPFIKL  149 (258)
T ss_pred             cEEEEecCCCCcHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCccceEEEecccccccCCCceEEe
Confidence            899999999999999987654 367888899999999999999999   79999999999999987654        699


Q ss_pred             cCCCchhhcccccccccccccccccCCCCC
Q 028725          174 SSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       174 ~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +|||++......   ....++..|+|||..
T Consensus       150 ~d~g~~~~~~~~---~~~~~~~~y~aPE~~  176 (258)
T cd05078         150 SDPGISITVLPK---EILLERIPWVPPECI  176 (258)
T ss_pred             cccccccccCCc---hhccccCCccCchhc
Confidence            999988654432   224678889999964

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.95  E-value=2.2e-26  Score=177.12  Aligned_cols=167  Identities=23%  Similarity=0.384  Sum_probs=140.3

Q ss_pred             CCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      |++.+.||.|++|.||+|... +++.+++|.+....  ......+.+|+.+++.++|+|++++.+.+...     .....
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-----~~~~~   75 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSK-----GKGSI   75 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecC-----CCCcE
Confidence            678899999999999999965 58899999997653  34456688899999999999999999988651     13679


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      ++++||+++ +|.+++.... ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++...
T Consensus        76 ~lv~e~~~~-~l~~~~~~~~-~~~~~~~~~~i~~~i~~al~~LH~---~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~  150 (287)
T cd07840          76 YMVFEYMDH-DLTGLLDSPE-VKFTESQIKCYMKQLLEGLQYLHS---NGILHRDIKGSNILINNDGVLKLADFGLARPY  150 (287)
T ss_pred             EEEeccccc-cHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCcHHHeEEcCCCCEEEccccceeec
Confidence            999999975 8888887553 468899999999999999999999   79999999999999999999999999999766


Q ss_pred             cccc--ccccccccccccCCCC
Q 028725          183 ENAE--KVGHVTPYSGSINPTN  202 (205)
Q Consensus       183 ~~~~--~~~~~~~~~~~~aPE~  202 (205)
                      ....  ......++..|+|||.
T Consensus       151 ~~~~~~~~~~~~~~~~y~~PE~  172 (287)
T cd07840         151 TKRNSADYTNRVITLWYRPPEL  172 (287)
T ss_pred             cCCCcccccccccccccCCcee
Confidence            6543  1223466788999995

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.95  E-value=1.8e-26  Score=178.64  Aligned_cols=174  Identities=20%  Similarity=0.295  Sum_probs=138.7

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccC-CCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|++.+.||+|+||.||+|... +++.|++|.++...  ......+.+|+.+++.+. ||||+++.+.+.....  .+.
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~--~~~   78 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEK--NGK   78 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCC--CCC
Confidence            47899999999999999999954 68899999986553  223466788999999995 6999999987765221  122


Q ss_pred             CeEEEEEeecCCCcHHHhhccCC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC-CCceeEcC
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHA---WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-NLVAKISS  175 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~-~~~~~l~D  175 (205)
                      ...++++||+++ +|.+++....   ...+++..++.++.|++.||.|||+   .+++|+||+|+||+++. ++.++|+|
T Consensus        79 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~---~~i~H~dl~~~nil~~~~~~~~kl~d  154 (295)
T cd07837          79 PSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHK---HGVMHRDLKPQNLLVDKQKGLLKIAD  154 (295)
T ss_pred             ceEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChHHEEEecCCCeEEEee
Confidence            348999999976 8888876432   2357999999999999999999999   79999999999999998 88999999


Q ss_pred             CCchhhccccc-ccccccccccccCCCCC
Q 028725          176 YNLPLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ||++....... ......++..|+|||..
T Consensus       155 fg~~~~~~~~~~~~~~~~~~~~~~aPE~~  183 (295)
T cd07837         155 LGLGRAFSIPVKSYTHEIVTLWYRAPEVL  183 (295)
T ss_pred             cccceecCCCccccCCcccccCCCChHHh
Confidence            99987554322 22334668889999964

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.94  E-value=1.7e-26  Score=174.84  Aligned_cols=163  Identities=23%  Similarity=0.431  Sum_probs=135.2

Q ss_pred             eeeccCcceEEEEEEecCCcEEEEEEecccCCc-CHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEEee
Q 028725           30 AFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEY  108 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~  108 (205)
                      +.||+|++|.||++....++.+++|.++..... ....+.+|+.++++++|+||+++.+.+..       ....++++|+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~~~~v~e~   73 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQ-------KQPIYIVMEL   73 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEec-------CCCeEEEEEc
Confidence            468999999999999766899999998765433 45678889999999999999999988765       5678999999


Q ss_pred             cCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccccccc
Q 028725          109 VPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKV  188 (205)
Q Consensus       109 ~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~~  188 (205)
                      +++++|.+++.... ..+++..+..++.+++.++.|||+   .+++|+||+|+||+++.++.++|+|||++.........
T Consensus        74 ~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~lH~---~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~  149 (251)
T cd05041          74 VPGGSLLTFLRKKK-NRLTVKKLLQMSLDAAAGMEYLES---KNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYT  149 (251)
T ss_pred             CCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHh---CCEehhhcCcceEEEcCCCcEEEeeccccccccCCcce
Confidence            99999999986543 367888999999999999999999   69999999999999999999999999999765532211


Q ss_pred             ---ccccccccccCCCCC
Q 028725          189 ---GHVTPYSGSINPTNS  203 (205)
Q Consensus       189 ---~~~~~~~~~~aPE~~  203 (205)
                         .....+..|+|||..
T Consensus       150 ~~~~~~~~~~~y~~PE~~  167 (251)
T cd05041         150 VSDGLKQIPIKWTAPEAL  167 (251)
T ss_pred             eccccCcceeccCChHhh
Confidence               112345679999963

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.94  E-value=1.4e-26  Score=179.37  Aligned_cols=166  Identities=16%  Similarity=0.337  Sum_probs=139.8

Q ss_pred             CCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEE
Q 028725           26 FDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      |.....||+|+||.||++.. .++..+++|.+..........+.+|+.+++.++|+|++++.+.+..       .+..++
T Consensus        22 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-------~~~~~l   94 (292)
T cd06657          22 LDNFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLV-------GDELWV   94 (292)
T ss_pred             hhhHHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEe-------CCEEEE
Confidence            33446789999999999985 4688999999865555556678899999999999999999998876       678999


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ++||+++++|.+++...   .+++..+..++.|++.++.|||+   .+++|+||+|+||++++++.++|+|||++.....
T Consensus        95 v~e~~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lH~---~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~  168 (292)
T cd06657          95 VMEFLEGGALTDIVTHT---RMNEEQIAAVCLAVLKALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK  168 (292)
T ss_pred             EEecCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEcccccceeccc
Confidence            99999999999977543   57889999999999999999999   7999999999999999999999999998865543


Q ss_pred             cc-ccccccccccccCCCCCC
Q 028725          185 AE-KVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       185 ~~-~~~~~~~~~~~~aPE~~~  204 (205)
                      .. ......++..|+|||+..
T Consensus       169 ~~~~~~~~~~~~~y~~pE~~~  189 (292)
T cd06657         169 EVPRRKSLVGTPYWMAPELIS  189 (292)
T ss_pred             ccccccccccCccccCHHHhc
Confidence            22 223357888999999753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.94  E-value=1.2e-26  Score=176.40  Aligned_cols=160  Identities=19%  Similarity=0.338  Sum_probs=136.0

Q ss_pred             eccCcceEEEEEEec-CCcEEEEEEecccCC---cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEEe
Q 028725           32 MGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE  107 (205)
Q Consensus        32 lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e  107 (205)
                      ||.|+||.||++... +++.+++|.+.....   .....+.+|+.+++.++|||++++.+.+..       ....++++|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-------~~~~~lv~e   73 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQG-------KKNLYLVME   73 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheec-------CcEEEEEEe
Confidence            588999999999965 589999999975533   345678889999999999999999887754       678999999


Q ss_pred             ecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccccc-
Q 028725          108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE-  186 (205)
Q Consensus       108 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~-  186 (205)
                      ++++++|.+++....  .+++..+..++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||++....... 
T Consensus        74 ~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~L~~lH~---~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~  148 (265)
T cd05579          74 YLPGGDLASLLENVG--SLDEDVARIYIAEIVLALEYLHS---NGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQ  148 (265)
T ss_pred             cCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---cCeecCCCCHHHeEEcCCCCEEEEecccchhcccCcc
Confidence            999999999987654  68899999999999999999999   799999999999999999999999999987554432 


Q ss_pred             --------ccccccccccccCCCCC
Q 028725          187 --------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       187 --------~~~~~~~~~~~~aPE~~  203 (205)
                              ......++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~Pe~~  173 (265)
T cd05579         149 INLNDDEKEDKRIVGTPDYIAPEVI  173 (265)
T ss_pred             cccccccccccCcccCccccCHHHh
Confidence                    22334678889999964

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.94  E-value=1.6e-26  Score=179.25  Aligned_cols=173  Identities=16%  Similarity=0.311  Sum_probs=140.3

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC-cCHHHHHHHHHHHhcc-CCCcccccccceeeecccCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ...++|++.+.||+|++|.||+|... +++.+++|.++.... .....+..|+..+... .||||+++.+.+..      
T Consensus        12 ~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~------   85 (296)
T cd06618          12 ADLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFIT------   85 (296)
T ss_pred             CCcchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeec------
Confidence            44578999999999999999999965 488999999975432 2344556677666666 49999999998876      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ....++++|++.+ ++.+++.... ..+++..+..++.|++.+|.|||+.  .+++|+||+|+||++++++.++|+|||
T Consensus        86 -~~~~~~v~e~~~~-~l~~l~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~~--~~i~H~dl~p~nill~~~~~~kL~dfg  160 (296)
T cd06618          86 -DSDVFICMELMST-CLDKLLKRIQ-GPIPEDILGKMTVAIVKALHYLKEK--HGVIHRDVKPSNILLDASGNVKLCDFG  160 (296)
T ss_pred             -CCeEEEEeeccCc-CHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhh--CCEecCCCcHHHEEEcCCCCEEECccc
Confidence             6689999999854 7777776533 3788999999999999999999963  489999999999999999999999999


Q ss_pred             chhhcccccccccccccccccCCCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~~~  204 (205)
                      ++.............++..|+|||...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~y~aPE~~~  187 (296)
T cd06618         161 ISGRLVDSKAKTRSAGCAAYMAPERID  187 (296)
T ss_pred             cchhccCCCcccCCCCCccccCHhhcC
Confidence            998766544444456788999999764

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.94  E-value=1.8e-26  Score=177.65  Aligned_cols=160  Identities=20%  Similarity=0.282  Sum_probs=128.3

Q ss_pred             eeccCcceEEEEEEe-cCCcEEEEEEecccCC---cCHHHHHHHHHHHh---ccCCCcccccccceeeecccCCCCCeEE
Q 028725           31 FMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS---HSTRNFMHHIELIS---KLRHCHLVSALGHCFECYFDDSSVSRIF  103 (205)
Q Consensus        31 ~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~---~l~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (205)
                      .||+|+||.||++.. .+++.+|+|.+.....   .......+|..++.   ...||+++.+.+.+..       .+..+
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~   73 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHT-------PDKLC   73 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEec-------CCeEE
Confidence            379999999999995 4588999999865432   11223344443333   3479999998887765       56789


Q ss_pred             EEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcc
Q 028725          104 LIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  183 (205)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~  183 (205)
                      +||||+++++|.+++....  .+++..+..++.|++.||.|||+   .+++|+||||+||++++++.++|+|||++....
T Consensus        74 lv~e~~~~~~L~~~i~~~~--~l~~~~~~~i~~qi~~al~~lH~---~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~  148 (279)
T cd05633          74 FILDLMNGGDLHYHLSQHG--VFSEKEMRFYATEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDFS  148 (279)
T ss_pred             EEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCcCCCCCCHHHEEECCCCCEEEccCCcceecc
Confidence            9999999999999887654  68999999999999999999999   799999999999999999999999999987554


Q ss_pred             cccccccccccccccCCCCC
Q 028725          184 NAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       184 ~~~~~~~~~~~~~~~aPE~~  203 (205)
                      .... ....++..|+|||..
T Consensus       149 ~~~~-~~~~~~~~y~aPE~~  167 (279)
T cd05633         149 KKKP-HASVGTHGYMAPEVL  167 (279)
T ss_pred             ccCc-cCcCCCcCccCHHHh
Confidence            4322 335789999999964

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.94  E-value=2.3e-26  Score=176.82  Aligned_cols=167  Identities=19%  Similarity=0.324  Sum_probs=136.5

Q ss_pred             CCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC-CcCHHHHHHHHHHHhccC-CCcccccccceeeecccCCCCCeE
Q 028725           26 FDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      |++.+.||+|+||.||+|.. .+++.+++|.++... ........+|+..+.++. |+|++++.+.+.+     ...+..
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~-----~~~~~~   75 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFD-----RKTGRL   75 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEec-----CCCCcE
Confidence            67889999999999999994 468899999987542 222334456888888885 9999999998865     123678


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      ++++||+.+ ++.+.+.... ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++ +.++|+|||++...
T Consensus        76 ~lv~e~~~~-~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~LH~---~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~  149 (282)
T cd07831          76 ALVFELMDM-NLYELIKGRK-RPLPEKRVKSYMYQLLKSLDHMHR---NGIFHRDIKPENILIKD-DILKLADFGSCRGI  149 (282)
T ss_pred             EEEEecCCc-cHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHH---CCceecccCHHHEEEcC-CCeEEEeccccccc
Confidence            999999965 8887776543 368999999999999999999999   79999999999999999 99999999999876


Q ss_pred             ccccccccccccccccCCCCC
Q 028725          183 ENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       183 ~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ..........++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~y~aPE~~  170 (282)
T cd07831         150 YSKPPYTEYISTRWYRAPECL  170 (282)
T ss_pred             ccCCCcCCCCCCcccCChhHh
Confidence            654444445678899999953

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.94  E-value=3.7e-27  Score=194.73  Aligned_cols=171  Identities=12%  Similarity=0.131  Sum_probs=129.4

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecC--CcEEEEEE--------------ecc---cCCcCHHHHHHHHHHHhccCCCcc
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKN--GTFIAIRC--------------LKM---KKSHSTRNFMHHIELISKLRHCHL   82 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~--~~~vaiK~--------------~~~---~~~~~~~~~~~e~~~l~~l~~~~i   82 (205)
                      ..++|++++.||+|+||.||+|..+.  +...+.|.              +.+   ........+.+|+.+++.++||||
T Consensus       146 ~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnI  225 (501)
T PHA03210        146 FLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENI  225 (501)
T ss_pred             hhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCc
Confidence            45789999999999999999987532  21222221              110   112234557889999999999999


Q ss_pred             cccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCc
Q 028725           83 VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA---WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLK  159 (205)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlk  159 (205)
                      +++++++..       ....+++++++. +++.+++....   ...........++.|++.||.|||+   .+|+|||||
T Consensus       226 v~l~~~~~~-------~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~---~gIiHrDLK  294 (501)
T PHA03210        226 LKIEEILRS-------EANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHD---KKLIHRDIK  294 (501)
T ss_pred             CcEeEEEEE-------CCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHh---CCeecCCCC
Confidence            999998876       567899999985 47777665321   1123345567899999999999999   799999999


Q ss_pred             cccEEeCCCCceeEcCCCchhhcccccc--cccccccccccCCCCC
Q 028725          160 ITDILLDQNLVAKISSYNLPLLAENAEK--VGHVTPYSGSINPTNS  203 (205)
Q Consensus       160 p~nilv~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~aPE~~  203 (205)
                      |+||+++.++.++|+|||+++.......  .....||..|+|||..
T Consensus       295 P~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~  340 (501)
T PHA03210        295 LENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEIL  340 (501)
T ss_pred             HHHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhh
Confidence            9999999999999999999987654332  2235799999999975

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.94  E-value=3e-26  Score=177.44  Aligned_cols=169  Identities=18%  Similarity=0.320  Sum_probs=138.4

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ++|++.+.||+|++|.||+|... +++.+++|.+.....  .....+.+|+.+++.++|||++++.+.+..       ..
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~   74 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHS-------EK   74 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEec-------CC
Confidence            57999999999999999999964 688999999865432  334567889999999999999999998865       56


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC-CCceeEcCCCch
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-NLVAKISSYNLP  179 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~-~~~~~l~Dfg~a  179 (205)
                      ..++|+||+++ ++.+.+........++..+..++.|++.||.|||+   .+++|+||+|+||++++ ++.++|+|||++
T Consensus        75 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~---~~i~H~dl~p~nill~~~~~~~kl~dfg~~  150 (294)
T PLN00009         75 RLYLVFEYLDL-DLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHS---HRVLHRDLKPQNLLIDRRTNALKLADFGLA  150 (294)
T ss_pred             eEEEEEecccc-cHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCcceEEEECCCCEEEEcccccc
Confidence            89999999964 88887765543456788888999999999999999   79999999999999985 567999999999


Q ss_pred             hhcccccc-cccccccccccCCCCC
Q 028725          180 LLAENAEK-VGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~-~~~~~~~~~~~aPE~~  203 (205)
                      ........ .....++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~y~~PE~~  175 (294)
T PLN00009        151 RAFGIPVRTFTHEVVTLWYRAPEIL  175 (294)
T ss_pred             cccCCCccccccCceeecccCHHHH
Confidence            75543221 2224667899999953

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.94  E-value=1.1e-26  Score=178.46  Aligned_cols=171  Identities=22%  Similarity=0.331  Sum_probs=137.5

Q ss_pred             hcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      .++|.+.+.||+|++|.||+|...      ++..|++|.+.... ......+.+|+.+++.++|+||+++++.+.+    
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~----   80 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFE----   80 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEcc----
Confidence            467999999999999999999964      35678999886443 2234568889999999999999999998765    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCC-----CCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC-
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAW-----QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-  169 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~-----~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~-  169 (205)
                         ....++++|++++++|.+++.....     ..+++..+..++.|++.+|.|||+   .+++|+||+|+||+++.++ 
T Consensus        81 ---~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~nil~~~~~~  154 (277)
T cd05036          81 ---RLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEE---NHFIHRDIAARNCLLTCKGP  154 (277)
T ss_pred             ---CCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccchheEEEeccCC
Confidence               4567999999999999999864321     257889999999999999999999   7999999999999998654 


Q ss_pred             --ceeEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          170 --VAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       170 --~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                        .++|+|||+++.......   ......+..|+|||+.
T Consensus       155 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  193 (277)
T cd05036         155 GRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAF  193 (277)
T ss_pred             CcceEeccCccccccCCccceecCCCCCccHhhCCHHHH
Confidence              689999999986643221   1112334679999964

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.94  E-value=1.2e-26  Score=179.22  Aligned_cols=170  Identities=24%  Similarity=0.392  Sum_probs=138.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      .++|++.+.||+|+||.||++...      ++..+++|.+..... .....+.+|+.+++.++||||+++.+.+..    
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~----   79 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAV----   79 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcC----
Confidence            478999999999999999999853      467899999875432 234568889999999999999999998765    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCC--------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceee
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHA--------------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFS  155 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~--------------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h  155 (205)
                         +...++++|++++++|.+++....                    ...+++..++.++.|++.||.|||+   .+++|
T Consensus        80 ---~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~---~~i~H  153 (288)
T cd05050          80 ---GKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSE---RKFVH  153 (288)
T ss_pred             ---CCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---CCeec
Confidence               557899999999999999986321                    1246788889999999999999999   79999


Q ss_pred             cCCccccEEeCCCCceeEcCCCchhhccccc---ccccccccccccCCCC
Q 028725          156 NNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  202 (205)
Q Consensus       156 ~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~  202 (205)
                      +||+|+||+++.++.++|+|||++.......   .......+..|+|||.
T Consensus       154 ~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  203 (288)
T cd05050         154 RDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPES  203 (288)
T ss_pred             ccccHhheEecCCCceEECccccceecccCccccccCCCccChhhcCHHH
Confidence            9999999999999999999999987543321   1122244567999995

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.94  E-value=1.6e-26  Score=191.78  Aligned_cols=187  Identities=17%  Similarity=0.319  Sum_probs=157.6

Q ss_pred             cccCHHHHHHHhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccCCcCHHHHHHHHHHHhcc-CCCcccccccce
Q 028725           12 RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHC   89 (205)
Q Consensus        12 ~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~   89 (205)
                      ....++.++.....|++.+.||.|.+|.||++. .++++.+|+|+..... ...++...|..+++.. .|||++.+++++
T Consensus         7 ~~~~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~-d~deEiE~eynil~~~~~hpnv~~fyg~~   85 (953)
T KOG0587|consen    7 MDIDLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTE-DEEEEIELEYNMLKKYSHHPNVATFYGAF   85 (953)
T ss_pred             cccchhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCc-cccHHHHHHHHHHHhccCCCCcceEEEEE
Confidence            344556667778889999999999999999999 4568888999886443 3334455677777776 599999999988


Q ss_pred             eeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC
Q 028725           90 FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL  169 (205)
Q Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~  169 (205)
                      ....-  -.++.+|||||+|.+|+..+++++-.+..+.|+.+.+|++.++.|+.+||+   ..++|||+|=.||+++.++
T Consensus        86 ~k~~~--~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~---nkviHRDikG~NiLLT~e~  160 (953)
T KOG0587|consen   86 IKKDP--GNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHN---NKVIHRDIKGQNVLLTENA  160 (953)
T ss_pred             EEecC--CCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhh---cceeeecccCceEEEeccC
Confidence            76443  346799999999999999999997767789999999999999999999999   5899999999999999999


Q ss_pred             ceeEcCCCchhhcccc-cccccccccccccCCCCCC
Q 028725          170 VAKISSYNLPLLAENA-EKVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       170 ~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~aPE~~~  204 (205)
                      .+||.|||++..++.. ...+...||+.|||||.-|
T Consensus       161 ~VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEVia  196 (953)
T KOG0587|consen  161 EVKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIA  196 (953)
T ss_pred             cEEEeeeeeeeeeecccccccCcCCCcccccceeee
Confidence            9999999999877754 3556679999999999754

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.94  E-value=2.6e-26  Score=181.81  Aligned_cols=179  Identities=13%  Similarity=0.220  Sum_probs=144.2

Q ss_pred             CHHHHHHHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceee
Q 028725           15 SLEELEEATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFE   91 (205)
Q Consensus        15 ~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   91 (205)
                      ...++....++|.+.+.||+|+||.||++.. .+++.||+|+++...  ....+.+.+|+.++++++||||+++.+.+..
T Consensus         8 ~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~   87 (345)
T cd07877           8 LNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTP   87 (345)
T ss_pred             HHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeee
Confidence            3456667789999999999999999999984 568899999997542  2234567789999999999999999987754


Q ss_pred             ecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCce
Q 028725           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVA  171 (205)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~  171 (205)
                      .... ......+++++++ +++|.+++...   .+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.+
T Consensus        88 ~~~~-~~~~~~~lv~~~~-~~~L~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIll~~~~~~  159 (345)
T cd07877          88 ARSL-EEFNDVYLVTHLM-GADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCEL  159 (345)
T ss_pred             cccc-cccccEEEEehhc-ccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChHHEEEcCCCCE
Confidence            2211 1123567888876 77998887653   58899999999999999999999   799999999999999999999


Q ss_pred             eEcCCCchhhcccccccccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +|+|||++......  .....++..|+|||..
T Consensus       160 kl~dfg~~~~~~~~--~~~~~~~~~y~aPE~~  189 (345)
T cd07877         160 KILDFGLARHTDDE--MTGYVATRWYRAPEIM  189 (345)
T ss_pred             EEeccccccccccc--ccccccCCCccCHHHH
Confidence            99999998765432  2335778899999953

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.94  E-value=3.2e-26  Score=176.71  Aligned_cols=166  Identities=17%  Similarity=0.328  Sum_probs=141.2

Q ss_pred             CCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEE
Q 028725           25 NFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (205)
                      .|...+.||+|++|.||++.. .++..+++|.++.......+.+.+|+.+++.+.|||++++.+.+..       .+..+
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~-------~~~~~   92 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLV-------GDELW   92 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEc-------CCeEE
Confidence            466678999999999999995 4688999999875554556678899999999999999999997765       56789


Q ss_pred             EEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcc
Q 028725          104 LIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  183 (205)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~  183 (205)
                      +++|++++++|.+++...   .+++..+..++.|++.+|.|||+   .+++||||+|+||+++.++.++|+|||++....
T Consensus        93 ~v~e~~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~  166 (285)
T cd06648          93 VVMEFLEGGALTDIVTHT---RMNEEQIATVCLAVLKALSFLHA---QGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVS  166 (285)
T ss_pred             EEEeccCCCCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCChhhEEEcCCCcEEEcccccchhhc
Confidence            999999999999988762   57889999999999999999999   799999999999999999999999999887554


Q ss_pred             ccc-ccccccccccccCCCCC
Q 028725          184 NAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       184 ~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ... ......++..|+|||..
T Consensus       167 ~~~~~~~~~~~~~~y~aPE~~  187 (285)
T cd06648         167 KEVPRRKSLVGTPYWMAPEVI  187 (285)
T ss_pred             cCCcccccccCCccccCHHHh
Confidence            332 22334688999999974

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.94  E-value=1.6e-26  Score=182.45  Aligned_cols=170  Identities=16%  Similarity=0.290  Sum_probs=139.9

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc--CCcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK--KSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ..++|.+.+.||+|+||.||+|... ++..+++|.+...  .......+.+|+.+++++ +||||+++.+.+..     .
T Consensus         5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~-----~   79 (337)
T cd07852           5 ILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKA-----E   79 (337)
T ss_pred             hhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeecc-----C
Confidence            3578999999999999999999954 5889999988543  233345677899999999 99999999997754     1


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      .....++++|++.+ +|.+++...   .+++.....++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||
T Consensus        80 ~~~~~~lv~e~~~~-~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~---~~i~H~dl~p~nill~~~~~~kl~d~g  152 (337)
T cd07852          80 NDKDIYLVFEYMET-DLHAVIRAN---ILEDVHKRYIMYQLLKALKYIHS---GNVIHRDLKPSNILLNSDCRVKLADFG  152 (337)
T ss_pred             CCceEEEEeccccc-CHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCcEEEeecc
Confidence            24468999999975 998888654   57788888999999999999999   799999999999999999999999999


Q ss_pred             chhhccccc------ccccccccccccCCCCC
Q 028725          178 LPLLAENAE------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~------~~~~~~~~~~~~aPE~~  203 (205)
                      ++.......      ......++..|+|||..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  184 (337)
T cd07852         153 LARSLSELEENPENPVLTDYVATRWYRAPEIL  184 (337)
T ss_pred             chhccccccccccCcchhcccccccccCceee
Confidence            997654432      22234688899999964

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.94  E-value=4.5e-26  Score=174.34  Aligned_cols=169  Identities=14%  Similarity=0.196  Sum_probs=136.9

Q ss_pred             CHHHHHHHhcCCCcceee--ccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhcc-CCCccccccccee
Q 028725           15 SLEELEEATNNFDTSAFM--GEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCF   90 (205)
Q Consensus        15 ~~~~~~~~~~~y~~~~~l--g~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~   90 (205)
                      +..+.....++|.+.+.+  |+|+||.||++.. .++..+++|.+........     |+.....+ +|||++++.+.+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-----e~~~~~~~~~h~~iv~~~~~~~   79 (267)
T PHA03390          5 SLSELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAI-----EPMVHQLMKDNPNFIKLYYSVT   79 (267)
T ss_pred             HHHHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchh-----hHHHHHHhhcCCCEEEEEEEEe
Confidence            345556667888888887  9999999999994 4688999999875432222     12122212 6999999998886


Q ss_pred             eecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC-
Q 028725           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-  169 (205)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~-  169 (205)
                      .       .+..+++|||+++++|.+++....  .+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++ 
T Consensus        80 ~-------~~~~~iv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil~~~~~~  147 (267)
T PHA03390         80 T-------LKGHVLIMDYIKDGDLFDLLKKEG--KLSEAEVKKIIRQLVEALNDLHK---HNIIHNDIKLENVLYDRAKD  147 (267)
T ss_pred             c-------CCeeEEEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEEeCCCC
Confidence            6       568999999999999999997654  78999999999999999999999   7999999999999999888 


Q ss_pred             ceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          170 VAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       170 ~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      .++|+|||++......   ....++..|+|||..
T Consensus       148 ~~~l~dfg~~~~~~~~---~~~~~~~~y~aPE~~  178 (267)
T PHA03390        148 RIYLCDYGLCKIIGTP---SCYDGTLDYFSPEKI  178 (267)
T ss_pred             eEEEecCccceecCCC---ccCCCCCcccChhhh
Confidence            9999999998765432   224688999999975

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=7.3e-28  Score=173.23  Aligned_cols=166  Identities=16%  Similarity=0.281  Sum_probs=145.8

Q ss_pred             HhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccCCcCHHHHHHHHHHHhccC-CCcccccccceeeecccCCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ...+|++.+.+|+|.+++||.|. ..+..++++|+++   +...+...+|+.+|..+. +|||++++++..+     +..
T Consensus        36 ~~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLK---PVkkkKIkREikIL~nL~gg~NIi~L~DiV~D-----p~S  107 (338)
T KOG0668|consen   36 NQDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILK---PVKKKKIKREIKILQNLRGGPNIIKLLDIVKD-----PES  107 (338)
T ss_pred             ccchHHHHHHHcCccHhhHhcccccCCCceEEEeeec---hHHHHHHHHHHHHHHhccCCCCeeehhhhhcC-----ccc
Confidence            34779999999999999999999 5568899999997   555677889999999997 9999999998877     335


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC-CceeEcCCCc
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN-LVAKISSYNL  178 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~-~~~~l~Dfg~  178 (205)
                      ..+.+++|++.+.+...+..     .++...+..++.+++.||.|||+   +||+|||+||.|++||.. -..+|+|||+
T Consensus       108 ktpaLiFE~v~n~Dfk~ly~-----tl~d~dIryY~~elLkALdyCHS---~GImHRDVKPhNvmIdh~~rkLrlIDWGL  179 (338)
T KOG0668|consen  108 KTPSLIFEYVNNTDFKQLYP-----TLTDYDIRYYIYELLKALDYCHS---MGIMHRDVKPHNVMIDHELRKLRLIDWGL  179 (338)
T ss_pred             cCchhHhhhhccccHHHHhh-----hhchhhHHHHHHHHHHHHhHHHh---cCcccccCCcceeeechhhceeeeeecch
Confidence            56789999999988887664     46778899999999999999999   899999999999999954 5799999999


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |-++-.....+....+..|-.||..
T Consensus       180 AEFYHp~~eYnVRVASRyfKGPELL  204 (338)
T KOG0668|consen  180 AEFYHPGKEYNVRVASRYFKGPELL  204 (338)
T ss_pred             HhhcCCCceeeeeeehhhcCCchhe
Confidence            9999998888888999999999963

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.94  E-value=2.1e-26  Score=181.07  Aligned_cols=171  Identities=19%  Similarity=0.253  Sum_probs=143.1

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +|++.+.||.|++|.||+|... +++.+++|.+....  ....+.+.+|+..++.++|+||+++.+++.....  .....
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~~~~   78 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSP--EDFND   78 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCc--ccccc
Confidence            5889999999999999999964 58899999987543  3445678899999999999999999998865211  12346


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .+++++|+.+ +|.+++....  .+++..++.++.|++.||.+||+   .+++|+||||.||++++++.++|+|||++..
T Consensus        79 ~~lv~e~~~~-~l~~~l~~~~--~l~~~~~~~i~~~l~~~l~~LH~---~gi~H~dlkp~nili~~~~~~~L~dfg~~~~  152 (330)
T cd07834          79 VYIVTELMET-DLHKVIKSPQ--PLTDDHIQYFLYQILRGLKYLHS---ANVIHRDLKPSNILVNSNCDLKICDFGLARG  152 (330)
T ss_pred             eEEEecchhh-hHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEcccCceEe
Confidence            8999999974 8888887654  78899999999999999999999   7999999999999999999999999999987


Q ss_pred             ccccc----ccccccccccccCCCCC
Q 028725          182 AENAE----KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~----~~~~~~~~~~~~aPE~~  203 (205)
                      .....    ......++..|+|||..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~y~aPE~~  178 (330)
T cd07834         153 VDPDEDEKGFLTEYVVTRWYRAPELL  178 (330)
T ss_pred             ecccccccccccccccccCcCCceee
Confidence            66543    23345678899999964

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.94  E-value=5.4e-26  Score=174.87  Aligned_cols=160  Identities=21%  Similarity=0.283  Sum_probs=128.4

Q ss_pred             eeccCcceEEEEEEe-cCCcEEEEEEecccCCc---CHHHHHHHH---HHHhccCCCcccccccceeeecccCCCCCeEE
Q 028725           31 FMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSH---STRNFMHHI---ELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (205)
Q Consensus        31 ~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~---~~~~~~~e~---~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (205)
                      .||+|+||.||++.. .+++.||+|.+......   ....+..|.   ..++...||+|+++.+.+..       ....+
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~   73 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT-------PDKLS   73 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeec-------CCEEE
Confidence            379999999999995 46889999998654211   112233333   33444579999998887765       56899


Q ss_pred             EEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcc
Q 028725          104 LIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  183 (205)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~  183 (205)
                      +++||+++++|.+++....  .+++..+..++.|++.|+.|||+   .+++|+||+|+||+++.++.++|+|||++....
T Consensus        74 ~v~e~~~g~~L~~~l~~~~--~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~  148 (278)
T cd05606          74 FILDLMNGGDLHYHLSQHG--VFSEAEMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDFS  148 (278)
T ss_pred             EEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCEEcCCCCHHHEEECCCCCEEEccCcCccccC
Confidence            9999999999999887543  68999999999999999999999   799999999999999999999999999987554


Q ss_pred             cccccccccccccccCCCCC
Q 028725          184 NAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       184 ~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ... .....++..|+|||..
T Consensus       149 ~~~-~~~~~~~~~y~aPE~~  167 (278)
T cd05606         149 KKK-PHASVGTHGYMAPEVL  167 (278)
T ss_pred             ccC-CcCcCCCcCCcCcHHh
Confidence            332 2335789999999975

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.94  E-value=3.6e-26  Score=180.45  Aligned_cols=173  Identities=15%  Similarity=0.243  Sum_probs=141.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc--CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK--KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|.+.+.||+|+||.||+|.. .+++.|++|.++..  .......+.+|+.+++.++|+||+++.+++.....  ...
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~--~~~   81 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHR--EAF   81 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccc--ccc
Confidence            46899999999999999999994 46899999998653  23334567789999999999999999987754211  122


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++++||+. ++|.+++....  .+++.....++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++
T Consensus        82 ~~~~lv~e~~~-~~L~~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~---~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~  155 (337)
T cd07858          82 NDVYIVYELMD-TDLHQIIRSSQ--TLSDDHCQYFLYQLLRGLKYIHS---ANVLHRDLKPSNLLLNANCDLKICDFGLA  155 (337)
T ss_pred             CcEEEEEeCCC-CCHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEECcCccc
Confidence            45899999995 58988887553  68899999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccc-cccccccccccccCCCCC
Q 028725          180 LLAENA-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~-~~~~~~~~~~~~~aPE~~  203 (205)
                      ...... .......++..|+|||..
T Consensus       156 ~~~~~~~~~~~~~~~~~~y~aPE~~  180 (337)
T cd07858         156 RTTSEKGDFMTEYVVTRWYRAPELL  180 (337)
T ss_pred             cccCCCcccccccccccCccChHHH
Confidence            866543 222334678899999963

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.94  E-value=1.3e-26  Score=178.99  Aligned_cols=171  Identities=13%  Similarity=0.220  Sum_probs=137.9

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccC-CCcccccccceeeecccCCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .+|...+.||+|+||.||++... ++..+++|.+.... ......+.+|+..+.++. |+||+++.+.+..       ..
T Consensus         4 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~-------~~   76 (288)
T cd06616           4 EDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFR-------EG   76 (288)
T ss_pred             HHhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEec-------CC
Confidence            45667788999999999999954 58899999987543 234456788999999986 9999999998765       55


Q ss_pred             eEEEEEeecCCCcHHHhhc---cCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725          101 RIFLIFEYVPNGTLRSWIS---GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~---~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      ..++++|++.. ++.++..   ......+++.....++.+++.||.|||+.  .+++||||+|+||++++++.++|+|||
T Consensus        77 ~~~~~~e~~~~-~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~dfg  153 (288)
T cd06616          77 DCWICMELMDI-SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEE--LKIIHRDVKPSNILLDRNGNIKLCDFG  153 (288)
T ss_pred             cEEEEEecccC-CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhc--CCeeccCCCHHHEEEccCCcEEEeecc
Confidence            78899999854 6655432   22224689999999999999999999973  589999999999999999999999999


Q ss_pred             chhhcccccccccccccccccCCCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~~~  204 (205)
                      +++............++..|+|||...
T Consensus       154 ~~~~~~~~~~~~~~~~~~~y~aPE~~~  180 (288)
T cd06616         154 ISGQLVDSIAKTRDAGCRPYMAPERID  180 (288)
T ss_pred             hhHHhccCCccccccCccCccCHHHhc
Confidence            998766554444457888999999753

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.94  E-value=3.7e-26  Score=173.63  Aligned_cols=161  Identities=19%  Similarity=0.286  Sum_probs=132.4

Q ss_pred             eeeccCcceEEEEEEecC----CcEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRLKN----GTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~~----~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||+|+||.||+|.+..    +..+++|.+..... ...+.+.+|+.+++.+.|+|++++.+.+.        .+..++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--------~~~~~~   72 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK--------GEPLML   72 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc--------CCceEE
Confidence            468999999999998532    26899999875543 34567888999999999999999988653        345799


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ++|++++++|.+++....  .+++..+..++.|++.+|.|||.   .+++|+||||+||+++.++.++|+|||+++....
T Consensus        73 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lh~---~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~  147 (257)
T cd05060          73 VMELAPLGPLLKYLKKRR--EIPVSDLKELAHQVAMGMAYLES---KHFVHRDLAARNVLLVNRHQAKISDFGMSRALGA  147 (257)
T ss_pred             EEEeCCCCcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHhh---cCeeccCcccceEEEcCCCcEEeccccccceeec
Confidence            999999999999998654  68899999999999999999999   7999999999999999999999999999986654


Q ss_pred             ccccc----cccccccccCCCCC
Q 028725          185 AEKVG----HVTPYSGSINPTNS  203 (205)
Q Consensus       185 ~~~~~----~~~~~~~~~aPE~~  203 (205)
                      .....    ...++..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~y~aPE~~  170 (257)
T cd05060         148 GSDYYRATTAGRWPLKWYAPECI  170 (257)
T ss_pred             CCcccccccCccccccccCHHHh
Confidence            33221    11234579999964

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=2e-27  Score=191.74  Aligned_cols=145  Identities=14%  Similarity=0.267  Sum_probs=128.6

Q ss_pred             cCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .-|-.++.||-|+||+|.++. ..+...+|.|.+.+..   .....-++.|-.+|...+++.|++++-.|.+       .
T Consensus       629 SmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQD-------k  701 (1034)
T KOG0608|consen  629 SMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQD-------K  701 (1034)
T ss_pred             cceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEecc-------C
Confidence            447788899999999999998 5567789999997653   3345557789999999999999999888876       7


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      .++|+||+|++||++.+++.+-+  -+.+.....++..+..|+.+.|.   +|+|||||||+|||||.+|.+||.|||++
T Consensus       702 dnLYFVMdYIPGGDmMSLLIrmg--IFeE~LARFYIAEltcAiesVHk---mGFIHRDiKPDNILIDrdGHIKLTDFGLC  776 (1034)
T KOG0608|consen  702 DNLYFVMDYIPGGDMMSLLIRMG--IFEEDLARFYIAELTCAIESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGLC  776 (1034)
T ss_pred             CceEEEEeccCCccHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHHHh---ccceecccCccceEEccCCceeeeecccc
Confidence            79999999999999999988664  78899999999999999999999   89999999999999999999999999998


Q ss_pred             h
Q 028725          180 L  180 (205)
Q Consensus       180 ~  180 (205)
                      .
T Consensus       777 T  777 (1034)
T KOG0608|consen  777 T  777 (1034)
T ss_pred             c
Confidence            3

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=4e-27  Score=200.73  Aligned_cols=181  Identities=20%  Similarity=0.325  Sum_probs=138.9

Q ss_pred             HHHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeec----
Q 028725           20 EEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECY----   93 (205)
Q Consensus        20 ~~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----   93 (205)
                      ....++|+.++.||+|+||.||+++.+ +|+.||+|++.... ........+|+..++++.||||++++..+.+..    
T Consensus       475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~  554 (1351)
T KOG1035|consen  475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELT  554 (1351)
T ss_pred             hhHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccc
Confidence            355678999999999999999999965 79999999997653 344567889999999999999976553110000    


Q ss_pred             --------------------------------------------------------------------------------
Q 028725           94 --------------------------------------------------------------------------------   93 (205)
Q Consensus        94 --------------------------------------------------------------------------------   93 (205)
                                                                                                      
T Consensus       555 ~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS  634 (1351)
T KOG1035|consen  555 VLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTS  634 (1351)
T ss_pred             cccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccccccccccccccc
Confidence                                                                                            


Q ss_pred             -ccC-------------------CCC--------CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Q 028725           94 -FDD-------------------SSV--------SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFL  145 (205)
Q Consensus        94 -~~~-------------------~~~--------~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~l  145 (205)
                       .++                   ...        ..+||=||||+..++.+++..+.. .-.....|.++++|++|+.|+
T Consensus       635 ~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~-~~~~d~~wrLFreIlEGLaYI  713 (1351)
T KOG1035|consen  635 DSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHF-NSQRDEAWRLFREILEGLAYI  713 (1351)
T ss_pred             ccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhccc-chhhHHHHHHHHHHHHHHHHH
Confidence             000                   001        356788899988777777765431 114678899999999999999


Q ss_pred             hcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcc-------------------cccccccccccccccCCCCCC
Q 028725          146 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE-------------------NAEKVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       146 h~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~-------------------~~~~~~~~~~~~~~~aPE~~~  204 (205)
                      |+   +|++||||||.||++++++.+||+|||+|....                   ++.......||.-|+|||...
T Consensus       714 H~---~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~  788 (1351)
T KOG1035|consen  714 HD---QGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLS  788 (1351)
T ss_pred             Hh---CceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhc
Confidence            99   899999999999999999999999999997622                   011233458999999999764

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.94  E-value=4.3e-26  Score=180.42  Aligned_cols=173  Identities=13%  Similarity=0.229  Sum_probs=140.2

Q ss_pred             HHhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ...++|++.+.||+|++|.||++. ..++..||+|.+....  ......+.+|+.+++.++||||+++.+.+..... ..
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-~~   90 (343)
T cd07880          12 EVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLS-LD   90 (343)
T ss_pred             ccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcc-cc
Confidence            456789999999999999999999 4468999999986542  2234567889999999999999999987754111 01


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      .....+++++++ +++|.+++...   .+++..+..++.|++.||.|||+   .+++||||+|+||++++++.++|+|||
T Consensus        91 ~~~~~~lv~e~~-~~~l~~~~~~~---~l~~~~~~~i~~qi~~al~~LH~---~gi~H~dlkp~Nill~~~~~~kl~dfg  163 (343)
T cd07880          91 RFHDFYLVMPFM-GTDLGKLMKHE---KLSEDRIQFLVYQMLKGLKYIHA---AGIIHRDLKPGNLAVNEDCELKILDFG  163 (343)
T ss_pred             ccceEEEEEecC-CCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeecc
Confidence            123568999998 66998887643   58899999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccccccccccccccCCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ++.......  ....++..|+|||..
T Consensus       164 ~~~~~~~~~--~~~~~~~~y~aPE~~  187 (343)
T cd07880         164 LARQTDSEM--TGYVVTRWYRAPEVI  187 (343)
T ss_pred             cccccccCc--cccccCCcccCHHHH
Confidence            997655432  234678899999953

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.94  E-value=6.5e-26  Score=176.59  Aligned_cols=176  Identities=18%  Similarity=0.325  Sum_probs=140.0

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeeccc-CCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFD-DSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~-~~~   98 (205)
                      .++|++.+.||.|++|.||+|... +++.+++|.+.....  .....+.+|+++++.++||||+++.+.+...... ...
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            578999999999999999999954 588999999865432  2234667899999999999999999877653221 122


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....+++++|+.+ ++.+.+.... ..+++..+..++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||+
T Consensus        87 ~~~~~lv~~~~~~-~l~~~~~~~~-~~~~~~~~~~i~~~l~~al~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~  161 (311)
T cd07866          87 RGSVYMVTPYMDH-DLSGLLENPS-VKLTESQIKCYMLQLLEGINYLHE---NHILHRDIKAANILIDNQGILKIADFGL  161 (311)
T ss_pred             CceEEEEEecCCc-CHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEECcCcc
Confidence            4567999999965 6777665432 468999999999999999999999   7999999999999999999999999999


Q ss_pred             hhhccccccc------------ccccccccccCCCCC
Q 028725          179 PLLAENAEKV------------GHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~------------~~~~~~~~~~aPE~~  203 (205)
                      ++........            ....++..|+|||..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  198 (311)
T cd07866         162 ARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELL  198 (311)
T ss_pred             chhccCCCcccccCCcccccccccceeccCcCChHHh
Confidence            9765543221            122567889999963

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.94  E-value=4.6e-26  Score=179.25  Aligned_cols=171  Identities=19%  Similarity=0.285  Sum_probs=141.0

Q ss_pred             HHHHHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecc
Q 028725           18 ELEEATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (205)
Q Consensus        18 ~~~~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   94 (205)
                      ++....++|++.+.||.|+||.||++.. .+++.+++|.+....  ......+.+|+.+++.++|||++++.+.+..   
T Consensus         4 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~---   80 (328)
T cd07856           4 TVFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFIS---   80 (328)
T ss_pred             ceeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEec---
Confidence            3445678999999999999999999984 478999999886432  3345677889999999999999999987753   


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEc
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  174 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~  174 (205)
                         .....++++|++ +++|.+++...   .+++.....++.|++.||.|||+   .+++|+||+|+||++++++.++|+
T Consensus        81 ---~~~~~~lv~e~~-~~~L~~~~~~~---~~~~~~~~~~~~ql~~aL~~LH~---~~iiH~dl~p~Nili~~~~~~~l~  150 (328)
T cd07856          81 ---PLEDIYFVTELL-GTDLHRLLTSR---PLEKQFIQYFLYQILRGLKYVHS---AGVVHRDLKPSNILINENCDLKIC  150 (328)
T ss_pred             ---CCCcEEEEeehh-ccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEeECCCCCEEeC
Confidence               134688999998 55898887643   57788888999999999999999   799999999999999999999999


Q ss_pred             CCCchhhcccccccccccccccccCCCCC
Q 028725          175 SYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       175 Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |||.+......  .....++..|+|||..
T Consensus       151 dfg~~~~~~~~--~~~~~~~~~y~aPE~~  177 (328)
T cd07856         151 DFGLARIQDPQ--MTGYVSTRYYRAPEIM  177 (328)
T ss_pred             ccccccccCCC--cCCCcccccccCceee
Confidence            99999755432  2234678889999963

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.94  E-value=6.8e-26  Score=177.44  Aligned_cols=165  Identities=17%  Similarity=0.319  Sum_probs=138.2

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCC---cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS---HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      +.|...+.||+|+||.||++.. .++..+++|.+.....   .....+.+|+.+++.++|||++++.+.+..       .
T Consensus        25 ~~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-------~   97 (317)
T cd06635          25 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLR-------E   97 (317)
T ss_pred             hhhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-------C
Confidence            4488899999999999999995 4688999999865432   234567889999999999999999998876       5


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++++||+.+ ++.+.+.... ..+++..+..++.+++.+|.|||+   .+++|+||+|+||+++.++.++|+|||++
T Consensus        98 ~~~~lv~e~~~g-~l~~~~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~---~~i~H~dL~p~Nil~~~~~~~kl~dfg~~  172 (317)
T cd06635          98 HTAWLVMEYCLG-SASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHS---HNMIHRDIKAGNILLTEPGQVKLADFGSA  172 (317)
T ss_pred             CeEEEEEeCCCC-CHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcccEEECCCCCEEEecCCCc
Confidence            678999999975 7777765433 468899999999999999999999   79999999999999999999999999998


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ......   ....++..|+|||..
T Consensus       173 ~~~~~~---~~~~~~~~y~aPE~~  193 (317)
T cd06635         173 SIASPA---NSFVGTPYWMAPEVI  193 (317)
T ss_pred             cccCCc---ccccCCccccChhhh
Confidence            755432   234688899999974

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=5.9e-26  Score=172.75  Aligned_cols=159  Identities=18%  Similarity=0.251  Sum_probs=129.6

Q ss_pred             eeeccCcceEEEEEEe-cCCcEEEEEEecccCC---cCHHHHHHHHH-HHhccCCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS---HSTRNFMHHIE-LISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~---~~~~~~~~e~~-~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||.|++|.||+|.. .+++.+|+|++.....   .....+..|.. .....+|+|++++.+.+..       .+..++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-------~~~~~l   74 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQS-------KDYLYL   74 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEc-------CCeEEE
Confidence            5689999999999995 4588999999865421   12223344444 3445589999999998865       668999


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ++||+++++|.+++....  .+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++.....
T Consensus        75 v~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  149 (260)
T cd05611          75 VMEYLNGGDCASLIKTLG--GLPEDWAKQYIAEVVLGVEDLHQ---RGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLE  149 (260)
T ss_pred             EEeccCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCcEEEeecccceeccc
Confidence            999999999999987653  68889999999999999999999   7999999999999999999999999999875543


Q ss_pred             ccccccccccccccCCCCC
Q 028725          185 AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 ~~~~~~~~~~~~~~aPE~~  203 (205)
                         .....++..|+|||..
T Consensus       150 ---~~~~~~~~~y~~pe~~  165 (260)
T cd05611         150 ---NKKFVGTPDYLAPETI  165 (260)
T ss_pred             ---cccCCCCcCccChhhh
Confidence               2234678899999974

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.94  E-value=7.6e-26  Score=174.24  Aligned_cols=172  Identities=23%  Similarity=0.328  Sum_probs=138.5

Q ss_pred             CCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC--cCHHHHHHHHHHHhcc---CCCcccccccceeeecccCCCC
Q 028725           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKL---RHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l---~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      |++.+.||+|++|.||+|..+ +++.+++|.++....  .....+.+|+.+++.+   .|+|++++.+.+.....  ...
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~--~~~   78 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRT--DRE   78 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccC--CCC
Confidence            678899999999999999975 489999999975422  2234455677666555   69999999998876321  122


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++++|++.+ +|.+++.......+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++
T Consensus        79 ~~~~l~~e~~~~-~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~---~~i~h~~l~~~nili~~~~~~~l~dfg~~  154 (287)
T cd07838          79 LKLTLVFEHVDQ-DLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHS---HRIVHRDLKPQNILVTSDGQVKIADFGLA  154 (287)
T ss_pred             ceeEEEehhccc-CHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCChhhEEEccCCCEEEeccCcc
Confidence            348999999965 89988876543468999999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      .............++..|+|||..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~PE~~  178 (287)
T cd07838         155 RIYSFEMALTSVVVTLWYRAPEVL  178 (287)
T ss_pred             eeccCCcccccccccccccChHHh
Confidence            877665544445678899999964

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.94  E-value=6.9e-26  Score=185.29  Aligned_cols=179  Identities=15%  Similarity=0.219  Sum_probs=130.1

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe-----------------cCCcEEEEEEecccCCcCHHHH--------------HHH
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL-----------------KNGTFIAIRCLKMKKSHSTRNF--------------MHH   70 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~-----------------~~~~~vaiK~~~~~~~~~~~~~--------------~~e   70 (205)
                      ..++|++.+.||+|+||.||+|..                 ..++.||+|.+........+.+              ..|
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence            467899999999999999999963                 1356799999865433222222              335


Q ss_pred             HHHHhccCCCcc-----cccccceeeecccC-CCCCeEEEEEeecCCCcHHHhhccCCC---------------------
Q 028725           71 IELISKLRHCHL-----VSALGHCFECYFDD-SSVSRIFLIFEYVPNGTLRSWISGHAW---------------------  123 (205)
Q Consensus        71 ~~~l~~l~~~~i-----~~~~~~~~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~---------------------  123 (205)
                      +.++.+++|.++     ++++++|.....++ ......++|+||+++++|.+++....+                     
T Consensus       223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~  302 (507)
T PLN03224        223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMP  302 (507)
T ss_pred             HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcc
Confidence            666666766544     55666654322111 123568999999999999998863210                     


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccccccccc--ccccccccCC
Q 028725          124 -QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH--VTPYSGSINP  200 (205)
Q Consensus       124 -~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~~~~--~~~~~~~~aP  200 (205)
                       ..+++..+..++.|++.+|.|||+   .+++||||||+||+++.++.++|+|||++...........  ...++.|+||
T Consensus       303 ~~~~~~~~~~~i~~ql~~aL~~lH~---~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aP  379 (507)
T PLN03224        303 QDKRDINVIKGVMRQVLTGLRKLHR---IGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPP  379 (507)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeCh
Confidence             124566788899999999999999   7999999999999999999999999999976544322222  2447899999


Q ss_pred             CCC
Q 028725          201 TNS  203 (205)
Q Consensus       201 E~~  203 (205)
                      |..
T Consensus       380 E~l  382 (507)
T PLN03224        380 EEL  382 (507)
T ss_pred             hhh
Confidence            975

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.94  E-value=5.3e-26  Score=172.32  Aligned_cols=168  Identities=20%  Similarity=0.338  Sum_probs=142.6

Q ss_pred             CCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +|++.+.||.|++|.||++.. .+++.+++|.+....  ......+.+|+..++.++|+||+++.+.+..       ...
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~   73 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLD-------GNK   73 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhcc-------CCE
Confidence            588899999999999999984 468899999987543  3345567789999999999999999988865       578


Q ss_pred             EEEEEeecCCCcHHHhhccC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          102 IFLIFEYVPNGTLRSWISGH--AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      .++++|++++++|.+++...  ....+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++
T Consensus        74 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~---~~i~h~~l~~~ni~~~~~~~~kl~d~g~~  150 (256)
T cd08530          74 LCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHE---QKILHRDLKSANILLVANDLVKIGDLGIS  150 (256)
T ss_pred             EEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCcceEEEecCCcEEEeeccch
Confidence            99999999999999988652  12468889999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ...... ......++..|+|||..
T Consensus       151 ~~~~~~-~~~~~~~~~~~~~Pe~~  173 (256)
T cd08530         151 KVLKKN-MAKTQIGTPHYMAPEVW  173 (256)
T ss_pred             hhhccC-CcccccCCccccCHHHH
Confidence            877665 22335688899999964

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.94  E-value=7.2e-26  Score=178.49  Aligned_cols=168  Identities=16%  Similarity=0.261  Sum_probs=136.6

Q ss_pred             hcCCC-cceeeccCcceEEEEEEec-CCcEEEEEEecccCCcC--------------HHHHHHHHHHHhccCCCcccccc
Q 028725           23 TNNFD-TSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHS--------------TRNFMHHIELISKLRHCHLVSAL   86 (205)
Q Consensus        23 ~~~y~-~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~--------------~~~~~~e~~~l~~l~~~~i~~~~   86 (205)
                      .++|. +.+.||.|+||.||+|... +++.||+|.++......              ...+.+|+.+++.++|+||+++.
T Consensus         7 ~~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   86 (335)
T PTZ00024          7 SERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLV   86 (335)
T ss_pred             ccchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeee
Confidence            46776 4577999999999999954 68899999986542221              12467899999999999999999


Q ss_pred             cceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC
Q 028725           87 GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD  166 (205)
Q Consensus        87 ~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~  166 (205)
                      +.+..       .+..+++||++. ++|.+++....  .+++.....++.|++.||.|||+   .+++|+||+|+||+++
T Consensus        87 ~~~~~-------~~~~~lv~e~~~-~~l~~~l~~~~--~~~~~~~~~~~~ql~~aL~~LH~---~~i~H~dl~~~nill~  153 (335)
T PTZ00024         87 DVYVE-------GDFINLVMDIMA-SDLKKVVDRKI--RLTESQVKCILLQILNGLNVLHK---WYFMHRDLSPANIFIN  153 (335)
T ss_pred             EEEec-------CCcEEEEEeccc-cCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeecccccHHHeEEC
Confidence            98765       568899999996 58999887543  68889999999999999999999   7999999999999999


Q ss_pred             CCCceeEcCCCchhhcccc---------------cccccccccccccCCCCC
Q 028725          167 QNLVAKISSYNLPLLAENA---------------EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       167 ~~~~~~l~Dfg~a~~~~~~---------------~~~~~~~~~~~~~aPE~~  203 (205)
                      .++.++|+|||++.....+               .......++..|+|||..
T Consensus       154 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  205 (335)
T PTZ00024        154 SKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELL  205 (335)
T ss_pred             CCCCEEECCccceeecccccccccccccccccccccccccccccCCCCChhc
Confidence            9999999999999765511               111223567789999964

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.94  E-value=7.2e-26  Score=174.83  Aligned_cols=167  Identities=19%  Similarity=0.274  Sum_probs=138.6

Q ss_pred             CCCcceeeccCcceEEEEEEec----CCcEEEEEEecccC----CcCHHHHHHHHHHHhcc-CCCcccccccceeeeccc
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK----SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFD   95 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~----~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~   95 (205)
                      +|++.+.||+|++|.||++...    ++..+++|+++...    ......+.+|+.++.++ +||+|+++.+.+..    
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~----   76 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQT----   76 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeec----
Confidence            4788999999999999998842    46789999986432    23345678899999999 59999999887754    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                         +...++|+||+++++|.+.+....  .+++..+..++.|++.+|.|||+   .+++|+||+|+||+++.++.++|+|
T Consensus        77 ---~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~ql~~~l~~lH~---~~~~H~dl~p~nil~~~~~~~~l~d  148 (288)
T cd05583          77 ---DTKLHLILDYVNGGELFTHLYQRE--HFTESEVRVYIAEIVLALDHLHQ---LGIIYRDIKLENILLDSEGHVVLTD  148 (288)
T ss_pred             ---CCEEEEEEecCCCCcHHHHHhhcC--CcCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEEEE
Confidence               567899999999999999887543  67888899999999999999999   7999999999999999999999999


Q ss_pred             CCchhhcccccc--cccccccccccCCCCC
Q 028725          176 YNLPLLAENAEK--VGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~~--~~~~~~~~~~~aPE~~  203 (205)
                      ||+++.......  .....++..|+|||..
T Consensus       149 fg~~~~~~~~~~~~~~~~~~~~~y~aPE~~  178 (288)
T cd05583         149 FGLSKEFLAEEEERAYSFCGTIEYMAPEVI  178 (288)
T ss_pred             CccccccccccccccccccCCccccCHHHh
Confidence            999876544322  2234678899999964

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.94  E-value=7e-26  Score=176.93  Aligned_cols=166  Identities=11%  Similarity=0.147  Sum_probs=133.0

Q ss_pred             CcceeeccCcceEEEEEEecCCcEEEEEEeccc--CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEE
Q 028725           27 DTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMK--KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        27 ~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      .+++.+|.|+++.|+++.. +++.+|+|+++..  .......+.+|+..++.++|+||+++.+.+..       .+..++
T Consensus         5 ~i~~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~-------~~~~~~   76 (314)
T cd08216           5 LIGKCFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIV-------DSELYV   76 (314)
T ss_pred             hhhHhhcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeec-------CCeEEE
Confidence            3444455555555555544 6899999999765  34456778899999999999999999998865       567899


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ++||+++++|.+++.......+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||.+.....
T Consensus        77 ~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~---~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~  153 (314)
T cd08216          77 VSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHS---KGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIK  153 (314)
T ss_pred             EEeccCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCcceEEEecCCceEEecCccceeecc
Confidence            9999999999999886544568899999999999999999999   7999999999999999999999999998865433


Q ss_pred             ccc--------cccccccccccCCCCC
Q 028725          185 AEK--------VGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 ~~~--------~~~~~~~~~~~aPE~~  203 (205)
                      ...        .....++..|+|||..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~y~aPE~~  180 (314)
T cd08216         154 HGKRQRVVHDFPKSSVKNLPWLSPEVL  180 (314)
T ss_pred             ccccccccccccccccccccccCHHHh
Confidence            221        2234567789999964

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.94  E-value=9.5e-26  Score=173.39  Aligned_cols=166  Identities=20%  Similarity=0.353  Sum_probs=140.3

Q ss_pred             CCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           26 FDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      |++.+.||.|++|.||+|.. .+++.+++|.++....  .....+.+|+.+++.++|+||+++.+.+..       +...
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~~   73 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRH-------KGDL   73 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhcc-------CCCE
Confidence            67788999999999999995 4688999999875532  245678889999999999999999998865       5789


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      ++++||+++ ++.+++.... ..+++..+..++.|++.+|.|||+   .+++|+||+|+||+++.++.++|+|||.+...
T Consensus        74 ~~v~e~~~~-~l~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~p~nili~~~~~~~l~df~~~~~~  148 (283)
T cd05118          74 YLVFEFMDT-DLYKLIKDRQ-RGLPESLIKSYLYQLLQGLAFCHS---HGILHRDLKPENLLINTEGVLKLADFGLARSF  148 (283)
T ss_pred             EEEEeccCC-CHHHHHHhhc-ccCCHHHHHHHHHHHHHHHHHHHH---CCeeecCcCHHHEEECCCCcEEEeeeeeeEec
Confidence            999999975 8888877643 478899999999999999999999   79999999999999999999999999999766


Q ss_pred             cccc-ccccccccccccCCCCC
Q 028725          183 ENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       183 ~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      .... ......++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~~~PE~~  170 (283)
T cd05118         149 GSPVRPYTHYVVTRWYRAPELL  170 (283)
T ss_pred             CCCcccccCccCcccccCcHHH
Confidence            6544 22334678889999963

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.94  E-value=5.3e-27  Score=166.28  Aligned_cols=174  Identities=16%  Similarity=0.285  Sum_probs=144.4

Q ss_pred             HHHHhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEeccc-CCcCHHHHHHHHHHHhcc-CCCcccccccceeeeccc
Q 028725           19 LEEATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMK-KSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFD   95 (205)
Q Consensus        19 ~~~~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~   95 (205)
                      +....+....+..||+|++|.|-+.+ .++|...|+|.+... ..+......+|+.+..+. .+|.++.++|..+.    
T Consensus        41 ~eV~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~r----  116 (282)
T KOG0984|consen   41 FEVPADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFR----  116 (282)
T ss_pred             cccchhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhc----
Confidence            44445666777889999999999988 457999999999755 344456677788766665 69999999997776    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhcc--CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeE
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISG--HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  173 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l  173 (205)
                         ....|+.||.+.. +|..+...  ..+...++..+-.|+..+..||.|||+.  ..++|||+||+|||++.+|.+|+
T Consensus       117 ---egdvwIcME~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~k--L~vIHRDvKPsNiLIn~~GqVKi  190 (282)
T KOG0984|consen  117 ---EGDVWICMELMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSK--LSVIHRDVKPSNILINYDGQVKI  190 (282)
T ss_pred             ---cccEEEeHHHhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHH--hhhhhccCCcceEEEccCCcEEE
Confidence               5689999999954 88887652  2335789999999999999999999997  88999999999999999999999


Q ss_pred             cCCCchhhcccccccccccccccccCCCC
Q 028725          174 SSYNLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       174 ~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      +|||.+..+.++--...-.|...|||||-
T Consensus       191 CDFGIsG~L~dSiAkt~daGCkpYmaPEr  219 (282)
T KOG0984|consen  191 CDFGISGYLVDSIAKTMDAGCKPYMAPER  219 (282)
T ss_pred             cccccceeehhhhHHHHhcCCCccCChhh
Confidence            99999998888766666789999999995

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.94  E-value=1.8e-25  Score=176.75  Aligned_cols=170  Identities=14%  Similarity=0.256  Sum_probs=137.3

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|.+.+.||+|++|.||+|.. .++..+|+|.+....  ......+.+|+.+++.++||||+++.+++...... ...
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~-~~~   92 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSG-DEF   92 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccC-CCC
Confidence            47899999999999999999995 468999999987542  22345678899999999999999999987542211 112


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++++|++.. ++.+...    ..+++..+..++.|++.||.|||+   .+++||||+|+||+++.++.++|+|||++
T Consensus        93 ~~~~lv~e~~~~-~l~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~---~~i~H~dlkp~NIll~~~~~~kL~dfg~~  164 (342)
T cd07879          93 QDFYLVMPYMQT-DLQKIMG----HPLSEDKVQYLVYQMLCGLKYIHS---AGIIHRDLKPGNLAVNEDCELKILDFGLA  164 (342)
T ss_pred             ceEEEEeccccc-CHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEeeCCCC
Confidence            456899999964 7776553    257889999999999999999999   79999999999999999999999999998


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +.....  .....++..|+|||..
T Consensus       165 ~~~~~~--~~~~~~~~~y~aPE~~  186 (342)
T cd07879         165 RHADAE--MTGYVVTRWYRAPEVI  186 (342)
T ss_pred             cCCCCC--CCCceeeecccChhhh
Confidence            765432  2234678889999964

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.94  E-value=1.3e-25  Score=171.86  Aligned_cols=174  Identities=14%  Similarity=0.270  Sum_probs=134.8

Q ss_pred             CCcceeeccCcceEEEEEEec----CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           26 FDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~~----~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      |.+.+.||+|+||.||+|...    ++..+++|++..+.  ....+.+.+|+.+++.++|||++++.+.+......+ ..
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~-~~   79 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKG-RL   79 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCC-cc
Confidence            667889999999999999853    36789999997542  334567888999999999999999998775421110 11


Q ss_pred             CeEEEEEeecCCCcHHHhhccC----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725          100 SRIFLIFEYVPNGTLRSWISGH----AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                      ...+++++|+.+++|.+++...    ....+++.....++.|++.||.|||+   .+++|+||||+||++++++.++|+|
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~nili~~~~~~kl~d  156 (273)
T cd05074          80 PIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSS---KNFIHRDLAARNCMLNENMTVCVAD  156 (273)
T ss_pred             cceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccchhhEEEcCCCCEEECc
Confidence            2357889999999998886421    11247888899999999999999999   7999999999999999999999999


Q ss_pred             CCchhhcccccc---cccccccccccCCCCC
Q 028725          176 YNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      ||+++.......   .....++..|++||..
T Consensus       157 fg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  187 (273)
T cd05074         157 FGLSKKIYSGDYYRQGCASKLPVKWLALESL  187 (273)
T ss_pred             ccccccccCCcceecCCCccCchhhcCHhHH
Confidence            999986543321   1222345678999963

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=3.7e-28  Score=177.00  Aligned_cols=176  Identities=15%  Similarity=0.335  Sum_probs=143.5

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEec--ccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCC-
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLK--MKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS-   97 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~--~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~-   97 (205)
                      ..+.|.-...+|+|.||+||+|+.. +|++|++|.+-  .++......-.+|+.+|..++|+|++.+++.|........ 
T Consensus        15 ~~~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r   94 (376)
T KOG0669|consen   15 EVSKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNR   94 (376)
T ss_pred             cchHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCccc
Confidence            3567888889999999999999954 58888887663  3345555667789999999999999999998876443322 


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      ....+++||.++++ +|.-++.... ..++..++..++.++++||.|+|+   ..|+|||+||+|++|+.++.++|+|||
T Consensus        95 ~r~t~ylVf~~ceh-DLaGlLsn~~-vr~sls~Ikk~Mk~Lm~GL~~iHr---~kilHRDmKaaNvLIt~dgilklADFG  169 (376)
T KOG0669|consen   95 DRATFYLVFDFCEH-DLAGLLSNRK-VRFSLSEIKKVMKGLMNGLYYIHR---NKILHRDMKAANVLITKDGILKLADFG  169 (376)
T ss_pred             ccceeeeeHHHhhh-hHHHHhcCcc-ccccHHHHHHHHHHHHHHHHHHHH---hhHHhhcccHhhEEEcCCceEEeeccc
Confidence            24568999999987 8888887654 578899999999999999999999   699999999999999999999999999


Q ss_pred             chhhccccccc-----ccccccccccCCCC
Q 028725          178 LPLLAENAEKV-----GHVTPYSGSINPTN  202 (205)
Q Consensus       178 ~a~~~~~~~~~-----~~~~~~~~~~aPE~  202 (205)
                      +++....+...     .-.+-|.+|.+||.
T Consensus       170 lar~fs~~~n~~kprytnrvvTLwYrppEl  199 (376)
T KOG0669|consen  170 LARAFSTSKNVVKPRYTNRVVTLWYRPPEL  199 (376)
T ss_pred             cccceecccccCCCCcccceeeeecCCHHH
Confidence            99766654322     22366999999985

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.94  E-value=5.4e-27  Score=174.40  Aligned_cols=172  Identities=17%  Similarity=0.227  Sum_probs=142.6

Q ss_pred             HHhcCCCcce-eeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHH-hccCCCcccccccceeeecccCC
Q 028725           21 EATNNFDTSA-FMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELI-SKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        21 ~~~~~y~~~~-~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ..+.+|.+.. .||-|-.|.|-.+.+ ++++++|+|++...     ....+|+++- ..-.||||+.+++++.....   
T Consensus        58 ~itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds-----~KARrEVeLHw~~s~h~~iV~IidVyeNs~~---  129 (400)
T KOG0604|consen   58 SITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS-----PKARREVELHWMASGHPHIVSIIDVYENSYQ---  129 (400)
T ss_pred             cchhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC-----HHHHhHhhhhhhhcCCCceEEeehhhhhhcc---
Confidence            4567776654 689999999999995 57999999998622     2233455533 33369999999998876332   


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC---CCCceeEc
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD---QNLVAKIS  174 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~---~~~~~~l~  174 (205)
                      +...+.+|||.++||.|.+.++.++.+.+++.....|+.||+.|+.|||+   .+|.||||||+|+|..   .+..+||+
T Consensus       130 ~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~---~nIAHRDlKpENLLyt~t~~na~lKLt  206 (400)
T KOG0604|consen  130 GRKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHS---MNIAHRDLKPENLLYTTTSPNAPLKLT  206 (400)
T ss_pred             CceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh---cchhhccCChhheeeecCCCCcceEec
Confidence            25678899999999999999998887889999999999999999999999   8999999999999997   45678999


Q ss_pred             CCCchhhcccccccccccccccccCCCCC
Q 028725          175 SYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       175 Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |||+|+.-.........+-|++|.|||+.
T Consensus       207 DfGFAK~t~~~~~L~TPc~TPyYvaPevl  235 (400)
T KOG0604|consen  207 DFGFAKETQEPGDLMTPCFTPYYVAPEVL  235 (400)
T ss_pred             ccccccccCCCccccCCcccccccCHHHh
Confidence            99999988877777778999999999975

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.93  E-value=1.7e-25  Score=176.99  Aligned_cols=174  Identities=16%  Similarity=0.274  Sum_probs=139.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeeccc------
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD------   95 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~------   95 (205)
                      ..+|.+.+.||.|+||.||+|.. .+++.|++|.+........+.+.+|+.+++.++||||+++.+.+......      
T Consensus         4 ~~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   83 (342)
T cd07854           4 GSRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVG   83 (342)
T ss_pred             CcceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccc
Confidence            47899999999999999999995 46889999999776666677788999999999999999998776542110      


Q ss_pred             -CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC-CCceeE
Q 028725           96 -DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-NLVAKI  173 (205)
Q Consensus        96 -~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~-~~~~~l  173 (205)
                       .......++++||+.+ +|.+++...   .+++..+..++.|++.||.|||+   .+++||||||+||+++. ++.++|
T Consensus        84 ~~~~~~~~~lv~e~~~~-~L~~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~---~givH~dikp~Nili~~~~~~~kl  156 (342)
T cd07854          84 SLTELNSVYIVQEYMET-DLANVLEQG---PLSEEHARLFMYQLLRGLKYIHS---ANVLHRDLKPANVFINTEDLVLKI  156 (342)
T ss_pred             cccccceEEEEeecccc-cHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEcCCCceEEE
Confidence             0112357899999974 888877643   58889999999999999999999   79999999999999984 567899


Q ss_pred             cCCCchhhccccc----ccccccccccccCCCCC
Q 028725          174 SSYNLPLLAENAE----KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       174 ~Dfg~a~~~~~~~----~~~~~~~~~~~~aPE~~  203 (205)
                      +|||++...+...    ......++..|+|||..
T Consensus       157 ~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  190 (342)
T cd07854         157 GDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLL  190 (342)
T ss_pred             CCcccceecCCccccccccccccccccccCHHHH
Confidence            9999997654321    11223678889999953

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.93  E-value=5.6e-26  Score=173.63  Aligned_cols=164  Identities=22%  Similarity=0.396  Sum_probs=132.4

Q ss_pred             eeeccCcceEEEEEEecC-------CcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           30 AFMGEGSKGQMYRGRLKN-------GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~~-------~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +.||+|+||.||+|...+       +..+++|.+.... ......+.+|+.+++.++||||+++.+.+..       ...
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~   73 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLL-------NEP   73 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecC-------CCC
Confidence            368999999999998542       2578999886443 3456678899999999999999999998865       557


Q ss_pred             EEEEEeecCCCcHHHhhccC-----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC-----ce
Q 028725          102 IFLIFEYVPNGTLRSWISGH-----AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-----VA  171 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~-----~~  171 (205)
                      .++++|++++++|.+++...     ....+++..+..++.|++.+|.|||+   .+++|+||+|+||++++++     .+
T Consensus        74 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~~~~~  150 (269)
T cd05044          74 QYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQ---MHFIHRDLAARNCLVSEKGYDADRVV  150 (269)
T ss_pred             eEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHh---CCcccCCCChheEEEecCCCCCCcce
Confidence            89999999999999998642     22347888999999999999999999   7999999999999999877     89


Q ss_pred             eEcCCCchhhccccc---ccccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      +++|||++.......   .......+..|+|||..
T Consensus       151 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  185 (269)
T cd05044         151 KIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESL  185 (269)
T ss_pred             EECCcccccccccccccccCcccCCCccccCHHHH
Confidence            999999987554322   11223456789999964

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.93  E-value=2.2e-25  Score=175.57  Aligned_cols=169  Identities=15%  Similarity=0.203  Sum_probs=135.6

Q ss_pred             CCCcceeeccCcceEEEEEEec-C--CcEEEEEEecccC--CcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCC
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-N--GTFIAIRCLKMKK--SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~--~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      +|.+.+.||+|+||.||++... +  +..+|+|.+....  ....+.+.+|+.+++.+ .||||+++.+.+....   ..
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~---~~   77 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFP---GN   77 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeecc---cc
Confidence            5788999999999999999954 4  7789999986432  22345677899999998 5999999988654311   12


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....+++++++. ++|.+.+....  .+++..+..++.|++.||.|||+   .+++|+||||+||++++++.++|+|||+
T Consensus        78 ~~~~~~~~e~~~-~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~---~givH~dlkp~Nili~~~~~~kl~Dfg~  151 (332)
T cd07857          78 FNELYLYEELME-ADLHQIIRSGQ--PLTDAHFQSFIYQILCGLKYIHS---ANVLHRDLKPGNLLVNADCELKICDFGL  151 (332)
T ss_pred             CCcEEEEEeccc-CCHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHeEEcCCCCEEeCcCCC
Confidence            345788889885 58998886543  68899999999999999999999   7999999999999999999999999999


Q ss_pred             hhhccccc-----ccccccccccccCCCC
Q 028725          179 PLLAENAE-----KVGHVTPYSGSINPTN  202 (205)
Q Consensus       179 a~~~~~~~-----~~~~~~~~~~~~aPE~  202 (205)
                      +.......     ......++..|+|||.
T Consensus       152 a~~~~~~~~~~~~~~~~~~g~~~y~aPE~  180 (332)
T cd07857         152 ARGFSENPGENAGFMTEYVATRWYRAPEI  180 (332)
T ss_pred             ceecccccccccccccCcccCccccCcHH
Confidence            97654322     1223468889999995

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.93  E-value=1.4e-25  Score=172.40  Aligned_cols=166  Identities=20%  Similarity=0.367  Sum_probs=140.5

Q ss_pred             CCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      |+..+.||+|.+|.||+|... +++.+++|.+....  ....+.+..|+.+++.++|+|++++.+.+..       ....
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-------~~~~   73 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHT-------ERKL   73 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhc-------CCce
Confidence            567788999999999999954 58999999997653  3445677889999999999999999998876       5689


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      ++++|+++ ++|.+++.... ..+++..+..++.+++.+|.+||+   .+++|+||+|+||++++++.++|+|||.+...
T Consensus        74 ~~v~e~~~-~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~  148 (282)
T cd07829          74 YLVFEYCD-MDLKKYLDKRP-GPLSPNLIKSIMYQLLRGLAYCHS---HRILHRDLKPQNILINRDGVLKLADFGLARAF  148 (282)
T ss_pred             EEEecCcC-cCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChheEEEcCCCCEEEecCCccccc
Confidence            99999997 49999998653 368899999999999999999999   79999999999999999999999999999766


Q ss_pred             cccc-ccccccccccccCCCCC
Q 028725          183 ENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       183 ~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      .... ......++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~~aPE~~  170 (282)
T cd07829         149 GIPLRTYTHEVVTLWYRAPEIL  170 (282)
T ss_pred             CCCccccCccccCcCcCChHHh
Confidence            5433 22234567789999964

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.93  E-value=2.1e-25  Score=168.51  Aligned_cols=160  Identities=23%  Similarity=0.365  Sum_probs=137.3

Q ss_pred             eccCcceEEEEEEec-CCcEEEEEEecccCC---cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEEe
Q 028725           32 MGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE  107 (205)
Q Consensus        32 lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e  107 (205)
                      ||+|++|.||++... +++.+++|.+.....   .....+.+|+.+++.++|||++++.+.+..       +...++++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~~~~v~e   73 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQT-------EEKLYLVLE   73 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeec-------CCeeEEEEe
Confidence            689999999999964 588999999875532   245578889999999999999999988755       678999999


Q ss_pred             ecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcccc-c
Q 028725          108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENA-E  186 (205)
Q Consensus       108 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~-~  186 (205)
                      ++++++|.+++....  .+++..+..++.|++.++.|||+   .+++|+||+|+||++++++.++|+|||++...... .
T Consensus        74 ~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lh~---~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~  148 (250)
T cd05123          74 YAPGGELFSHLSKEG--RFSEERARFYAAEIVLALEYLHS---LGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGS  148 (250)
T ss_pred             cCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcceEEEcCCCcEEEeecCcceecccCCC
Confidence            999999999997654  68899999999999999999999   79999999999999999999999999999766553 2


Q ss_pred             ccccccccccccCCCCC
Q 028725          187 KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       187 ~~~~~~~~~~~~aPE~~  203 (205)
                      ......++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~Pe~~  165 (250)
T cd05123         149 RTNTFCGTPEYLAPEVL  165 (250)
T ss_pred             cccCCcCCccccChHHh
Confidence            34446788899999964

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.93  E-value=3.4e-25  Score=173.24  Aligned_cols=163  Identities=15%  Similarity=0.291  Sum_probs=136.4

Q ss_pred             CCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCC---cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           26 FDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS---HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      |...+.||+|+||.||+|.. .++..+++|.+.....   .....+.+|+.+++.++|||++++.+.+.+       ...
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~~   95 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLK-------EHT   95 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEe-------CCE
Confidence            77778899999999999995 4688999999875432   233567789999999999999999998876       678


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++++||+.+ ++.+++.... ..+++..+..++.|++.++.|||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        96 ~~lv~e~~~~-~l~~~l~~~~-~~l~~~~~~~~~~qi~~al~~LH~---~gi~H~dl~p~nili~~~~~~kL~dfg~~~~  170 (313)
T cd06633          96 AWLVMEYCLG-SASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHS---HNMIHRDIKAGNILLTEPGQVKLADFGSASK  170 (313)
T ss_pred             EEEEEecCCC-CHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCChhhEEECCCCCEEEeecCCCcc
Confidence            9999999965 7777776433 468899999999999999999999   7999999999999999999999999999864


Q ss_pred             cccccccccccccccccCCCCC
Q 028725          182 AENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ...   .....++..|+|||..
T Consensus       171 ~~~---~~~~~~~~~y~aPE~~  189 (313)
T cd06633         171 SSP---ANSFVGTPYWMAPEVI  189 (313)
T ss_pred             cCC---CCCccccccccChhhc
Confidence            332   2335788899999975

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.93  E-value=5.6e-27  Score=172.53  Aligned_cols=171  Identities=14%  Similarity=0.300  Sum_probs=141.0

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ..+..+.+..||.|+.|+||++.++ +|...|+|.+.+.. ..+.+.+...+.++... ++|.|++++|.|..       
T Consensus        90 dindl~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~-------  162 (391)
T KOG0983|consen   90 DINDLENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFIT-------  162 (391)
T ss_pred             ChHHhhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEee-------
Confidence            3455667778999999999999965 58899999997664 34456666777766555 59999999999987       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      +...++.||.+.. .+..++.+-. +++++.-+-.+...+.+||.||-+.  ++|+|||+||+|||+|..|++|++|||+
T Consensus       163 n~dV~IcMelMs~-C~ekLlkrik-~piPE~ilGk~tva~v~AL~YLKeK--H~viHRDvKPSNILlDe~GniKlCDFGI  238 (391)
T KOG0983|consen  163 NTDVFICMELMST-CAEKLLKRIK-GPIPERILGKMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGNIKLCDFGI  238 (391)
T ss_pred             CchHHHHHHHHHH-HHHHHHHHhc-CCchHHhhhhhHHHHHHHHHHHHHh--cceeecccCccceEEccCCCEEeecccc
Confidence            5678889998843 7777666443 5788888888899999999999987  8999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +..+.++.-.....|.+-|||||-.
T Consensus       239 sGrlvdSkAhtrsAGC~~YMaPERi  263 (391)
T KOG0983|consen  239 SGRLVDSKAHTRSAGCAAYMAPERI  263 (391)
T ss_pred             cceeecccccccccCCccccCcccc
Confidence            9888877766667999999999964

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.93  E-value=1.8e-25  Score=175.85  Aligned_cols=164  Identities=16%  Similarity=0.255  Sum_probs=131.9

Q ss_pred             eeeccC--cceEEEEEEe-cCCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEG--SKGQMYRGRL-KNGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g--~~g~V~~~~~-~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      ..||+|  +|++||.+.. .+|+.||+|++.....  ...+.+.+|+.+++.++||||+++.+++..       +...++
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~-------~~~~~~   76 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTT-------GSWLWV   76 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEec-------CCceEE
Confidence            456666  9999999995 4699999999875432  234678889999999999999999998866       567899


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ++|++.++++.+++.......+++..+..++.|++.||.|||+   .+++||||||+||++++++.++++||+.+.....
T Consensus        77 v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~---~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~  153 (328)
T cd08226          77 ISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQ---NGYIHRNIKASHILISGDGLVSLSGLSHLYSLVR  153 (328)
T ss_pred             EEecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEeCCCcEEEechHHHhhhhc
Confidence            9999999999999886544468899999999999999999999   7999999999999999999999999986543322


Q ss_pred             ccc--------cccccccccccCCCCC
Q 028725          185 AEK--------VGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 ~~~--------~~~~~~~~~~~aPE~~  203 (205)
                      ...        .....++..|+|||+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~y~aPE~~  180 (328)
T cd08226         154 NGQKAKVVYDFPQFSTSVLPWLSPELL  180 (328)
T ss_pred             cCccccccccccccccCccCccChhhh
Confidence            111        1112345569999974

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.93  E-value=4.3e-27  Score=190.36  Aligned_cols=172  Identities=18%  Similarity=0.365  Sum_probs=154.8

Q ss_pred             HHhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ....+|..+..+|.|++|.||+++ .++++..|+|+++.+...+......|+-+++.++||||+.+++.+..       .
T Consensus        12 nP~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr-------~   84 (829)
T KOG0576|consen   12 NPQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLR-------R   84 (829)
T ss_pred             CCccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhh-------h
Confidence            445789999999999999999999 55799999999999988888889999999999999999999998876       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ..+|+.|||+.+|+|++......  ++++..+.+..+..++|+.|||.   ++-+|||||-.||++++.|.+++.|||.+
T Consensus        85 dklwicMEycgggslQdiy~~Tg--plselqiayvcRetl~gl~ylhs---~gk~hRdiKGanilltd~gDvklaDfgvs  159 (829)
T KOG0576|consen   85 DKLWICMEYCGGGSLQDIYHVTG--PLSELQIAYVCRETLQGLKYLHS---QGKIHRDIKGANILLTDEGDVKLADFGVS  159 (829)
T ss_pred             cCcEEEEEecCCCcccceeeecc--cchhHHHHHHHhhhhccchhhhc---CCcccccccccceeecccCceeecccCch
Confidence            78999999999999999877654  89999999999999999999999   89999999999999999999999999988


Q ss_pred             hhcccc-cccccccccccccCCCCCC
Q 028725          180 LLAENA-EKVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       180 ~~~~~~-~~~~~~~~~~~~~aPE~~~  204 (205)
                      ..+... .+.....||++|||||..|
T Consensus       160 aqitati~KrksfiGtpywmapEvaa  185 (829)
T KOG0576|consen  160 AQITATIAKRKSFIGTPYWMAPEVAA  185 (829)
T ss_pred             hhhhhhhhhhhcccCCccccchhHHH
Confidence            655543 4556689999999999754

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.93  E-value=2.1e-25  Score=174.05  Aligned_cols=166  Identities=19%  Similarity=0.336  Sum_probs=137.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .+.|...+.||+|++|.||+|... ++..+++|.+....   ......+.+|+.+++.++|+|++++.+.+..       
T Consensus        14 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------   86 (308)
T cd06634          14 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR-------   86 (308)
T ss_pred             HHHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEc-------
Confidence            455888899999999999999954 57889999886432   2234567789999999999999999998876       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....++++||+. +++.+.+.... ..+++..+..++.|++.++.|||+   .+++|+||+|+||+++.++.++|+|||+
T Consensus        87 ~~~~~lv~e~~~-~~l~~~~~~~~-~~l~~~~~~~~~~~l~~~l~~LH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~  161 (308)
T cd06634          87 EHTAWLVMEYCL-GSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGS  161 (308)
T ss_pred             CCeeEEEEEccC-CCHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHhEEECCCCcEEECCccc
Confidence            567899999996 58877765433 368889999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +......   ....++..|+|||..
T Consensus       162 ~~~~~~~---~~~~~~~~y~aPE~~  183 (308)
T cd06634         162 ASIMAPA---NXFVGTPYWMAPEVI  183 (308)
T ss_pred             ceeecCc---ccccCCccccCHHHH
Confidence            8765542   234678899999963

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=5.4e-26  Score=180.76  Aligned_cols=168  Identities=11%  Similarity=0.201  Sum_probs=140.5

Q ss_pred             hcCCCcceeeccCcceEEEEEEecCCcEEEEEEeccc--CCcCHHHHHHHHHHHhccC-CCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMK--KSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .+.|++++.||.||.+.||++...+...+|+|.+...  ..+....+.+|+..|.+++ |.+|+++++.-..       +
T Consensus       360 g~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~-------d  432 (677)
T KOG0596|consen  360 GREYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVT-------D  432 (677)
T ss_pred             cchhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeecc-------C
Confidence            4669999999999999999999776777887777544  3556788999999999995 9999999998765       7


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +.+|+|||+= .-+|.+++.........| .+..+..|++.++.++|+   .||+|.||||+|+++- .|.+||+|||+|
T Consensus       433 ~~lYmvmE~G-d~DL~kiL~k~~~~~~~~-~lk~ywkqML~aV~~IH~---~gIVHSDLKPANFLlV-kG~LKLIDFGIA  506 (677)
T KOG0596|consen  433 GYLYMVMECG-DIDLNKILKKKKSIDPDW-FLKFYWKQMLLAVKTIHQ---HGIVHSDLKPANFLLV-KGRLKLIDFGIA  506 (677)
T ss_pred             ceEEEEeecc-cccHHHHHHhccCCCchH-HHHHHHHHHHHHHHHHHH---hceeecCCCcccEEEE-eeeEEeeeechh
Confidence            7999999977 449999998765433434 677889999999999999   7999999999999884 579999999999


Q ss_pred             hhccccccc---ccccccccccCCCCC
Q 028725          180 LLAENAEKV---GHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~---~~~~~~~~~~aPE~~  203 (205)
                      ..+..+...   ...+||..||+||+.
T Consensus       507 ~aI~~DTTsI~kdsQvGT~NYMsPEAl  533 (677)
T KOG0596|consen  507 NAIQPDTTSIVKDSQVGTVNYMSPEAL  533 (677)
T ss_pred             cccCccccceeeccccCcccccCHHHH
Confidence            888776532   234999999999974

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.93  E-value=4.2e-25  Score=174.74  Aligned_cols=172  Identities=16%  Similarity=0.264  Sum_probs=140.2

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ...++|++.+.||+|++|.||+|... ++..+++|++....  ......+.+|+.+++.++|+|++++.+.+...... .
T Consensus        12 ~~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~-~   90 (343)
T cd07851          12 EVPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSL-E   90 (343)
T ss_pred             cccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccc-c
Confidence            34678999999999999999999964 58899999986532  23345677899999999999999998866542110 1


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      .....++++|++ +++|.+++..   ..+++..++.++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||
T Consensus        91 ~~~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~ql~~aL~~LH~---~gi~H~dlkp~Nill~~~~~~kL~dfg  163 (343)
T cd07851          91 DFQDVYLVTHLM-GADLNNIVKC---QKLSDDHIQFLVYQILRGLKYIHS---AGIIHRDLKPSNIAVNEDCELKILDFG  163 (343)
T ss_pred             ccccEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCCEEEcccc
Confidence            223589999998 5699998875   368999999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccccccccccccccCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      ++......  .....++..|+|||.
T Consensus       164 ~~~~~~~~--~~~~~~~~~y~aPE~  186 (343)
T cd07851         164 LARHTDDE--MTGYVATRWYRAPEI  186 (343)
T ss_pred             cccccccc--ccCCcccccccCHHH
Confidence            99766543  233467888999995

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.93  E-value=6.1e-25  Score=170.36  Aligned_cols=172  Identities=10%  Similarity=0.088  Sum_probs=123.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEecC----CcEEEEEEecccCCcCH-H----------HHHHHHHHHhccCCCccccccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKN----GTFIAIRCLKMKKSHST-R----------NFMHHIELISKLRHCHLVSALG   87 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~----~~~vaiK~~~~~~~~~~-~----------~~~~e~~~l~~l~~~~i~~~~~   87 (205)
                      .++|++.+.||+|+||.||+|...+    +..+++|+......... +          ....+...+..++|++++++.+
T Consensus        11 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~   90 (294)
T PHA02882         11 GKEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYG   90 (294)
T ss_pred             CCceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEE
Confidence            4689999999999999999999643    44566665443322111 1          1122334456678999999988


Q ss_pred             ceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC
Q 028725           88 HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ  167 (205)
Q Consensus        88 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~  167 (205)
                      .+....   ......+++++++.. ++.+.+....  ..++..+..++.|++.||.|||+   .+++||||||+||+++.
T Consensus        91 ~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~---~~iiHrDiKp~Nill~~  161 (294)
T PHA02882         91 CGSFKR---CRMYYRFILLEKLVE-NTKEIFKRIK--CKNKKLIKNIMKDMLTTLEYIHE---HGISHGDIKPENIMVDG  161 (294)
T ss_pred             eeeEec---CCceEEEEEEehhcc-CHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcC
Confidence            654421   111244677887744 6777665432  35678888999999999999999   79999999999999999


Q ss_pred             CCceeEcCCCchhhccccc--------ccccccccccccCCCCC
Q 028725          168 NLVAKISSYNLPLLAENAE--------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       168 ~~~~~l~Dfg~a~~~~~~~--------~~~~~~~~~~~~aPE~~  203 (205)
                      ++.++|+|||+|+......        ......||..|+|||..
T Consensus       162 ~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~  205 (294)
T PHA02882        162 NNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAH  205 (294)
T ss_pred             CCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHh
Confidence            9999999999997653221        11234799999999964

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.93  E-value=6.3e-27  Score=171.53  Aligned_cols=170  Identities=12%  Similarity=0.182  Sum_probs=137.9

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC-cCHHHHHHHHHHHhc-cCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIELISK-LRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +.+.+..||.|.||+|++..++ .|+..|+|.+..... .+.+.+..|.+...+ -.+|||++++|.++.       .+.
T Consensus        65 ~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~-------EGd  137 (361)
T KOG1006|consen   65 NLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFS-------EGD  137 (361)
T ss_pred             hHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhc-------CCc
Confidence            3455667999999999999965 599999999976543 455667777765544 468999999999987       678


Q ss_pred             EEEEEeecCCCcHHHhhcc---CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725          102 IFLIFEYVPNGTLRSWISG---HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      .|+.||.+. .++..+.+.   -....+++.-+-.|.--+..||.||-..  ..|+|||+||+|||++..|.+||+|||+
T Consensus       138 cWiCMELMd-~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~--lkiIHRDvKPSNILldr~G~vKLCDFGI  214 (361)
T KOG1006|consen  138 CWICMELMD-ISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEE--LKIIHRDVKPSNILLDRHGDVKLCDFGI  214 (361)
T ss_pred             eeeeHHHHh-hhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHH--hhhhhccCChhheEEecCCCEeeecccc
Confidence            999999994 488877541   1113577777778888889999999987  8999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~~  204 (205)
                      +..+-++--...-.|...|||||-.+
T Consensus       215 cGqLv~SiAkT~daGCrpYmAPERi~  240 (361)
T KOG1006|consen  215 CGQLVDSIAKTVDAGCRPYMAPERID  240 (361)
T ss_pred             hHhHHHHHHhhhccCCccccChhccC
Confidence            98887776666679999999999643

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.93  E-value=5.9e-25  Score=167.24  Aligned_cols=168  Identities=21%  Similarity=0.257  Sum_probs=134.0

Q ss_pred             CCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc-----CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK-----KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~-----~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      +|.+.+.||+|+||.||++... .+..+++|+++..     .......+.+|+.+++.++|||++++.+.+.+       
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------   73 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLE-------   73 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhc-------
Confidence            5888999999999999999854 3445555555432     12234456678899999999999999998765       


Q ss_pred             CCeEEEEEeecCCCcHHHhhcc--CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           99 VSRIFLIFEYVPNGTLRSWISG--HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                      ....++++||+++++|.+++..  .....+++..++.++.|++.||.|||+   .+++|+||+|+||++++ +.++|+||
T Consensus        74 ~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~h~~l~~~nili~~-~~~~l~d~  149 (260)
T cd08222          74 RDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQ---RRILHRDLKAKNIFLKN-NLLKIGDF  149 (260)
T ss_pred             CCceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHH---cCccccCCChhheEeec-CCEeeccc
Confidence            5678999999999999988763  222468999999999999999999999   79999999999999975 56999999


Q ss_pred             Cchhhccccc-ccccccccccccCCCCC
Q 028725          177 NLPLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      |++....... ......++..|+|||..
T Consensus       150 g~~~~~~~~~~~~~~~~~~~~~~~pe~~  177 (260)
T cd08222         150 GVSRLLMGSCDLATTFTGTPYYMSPEAL  177 (260)
T ss_pred             CceeecCCCcccccCCCCCcCccCHHHH
Confidence            9987664433 22335678899999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.93  E-value=3.4e-25  Score=160.96  Aligned_cols=142  Identities=11%  Similarity=0.105  Sum_probs=108.8

Q ss_pred             ceeeccCcceEEEEEEecCCcEEEEEEecccCCcCH--------------------------HHHHHHHHHHhccCCCcc
Q 028725           29 SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST--------------------------RNFMHHIELISKLRHCHL   82 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~--------------------------~~~~~e~~~l~~l~~~~i   82 (205)
                      ...||+|++|.||+|...+|+.||+|+++.......                          .....|...+..+.++++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            467999999999999977899999999975422110                          122348889999988776


Q ss_pred             cccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCceeecCCccc
Q 028725           83 VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFL-HTGIVPGVFSNNLKIT  161 (205)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~l-h~~~~~~i~h~dlkp~  161 (205)
                      ........         ...++||||++++++.......  ..++......++.|++.+|.++ |+   .+++||||||+
T Consensus        82 ~~p~~~~~---------~~~~iVmE~i~g~~l~~~~~~~--~~~~~~~~~~i~~qi~~~L~~l~H~---~giiHrDlkP~  147 (190)
T cd05147          82 PCPEPILL---------KSHVLVMEFIGDDGWAAPRLKD--APLSESKARELYLQVIQIMRILYQD---CRLVHADLSEY  147 (190)
T ss_pred             CCCcEEEe---------cCCEEEEEEeCCCCCcchhhhc--CCCCHHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHH
Confidence            43322211         1238999999887765543322  3688899999999999999999 67   79999999999


Q ss_pred             cEEeCCCCceeEcCCCchhhcccc
Q 028725          162 DILLDQNLVAKISSYNLPLLAENA  185 (205)
Q Consensus       162 nilv~~~~~~~l~Dfg~a~~~~~~  185 (205)
                      ||+++ ++.++|+|||+|...+++
T Consensus       148 NIli~-~~~v~LiDFG~a~~~~~~  170 (190)
T cd05147         148 NLLYH-DGKLYIIDVSQSVEHDHP  170 (190)
T ss_pred             HEEEE-CCcEEEEEccccccCCCc
Confidence            99998 478999999999765543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.93  E-value=4.4e-25  Score=184.09  Aligned_cols=174  Identities=12%  Similarity=0.121  Sum_probs=120.2

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-C----CcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-N----GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~----~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      ..++|++.+.||+|+||.||+|... +    +..||+|.+.....  .+.+.++  .+....+.++..+...+..... .
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~--~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~-~  204 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA--VEIWMNE--RVRRACPNSCADFVYGFLEPVS-S  204 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch--hHHHHHH--HHHhhchhhHHHHHHhhhcccc-c
Confidence            5678999999999999999999954 4    68999998763322  1212211  1111122233333222211111 1


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCC------------------CCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQ------------------SLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNL  158 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~------------------~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dl  158 (205)
                      ......++++||+.+++|.+++......                  ......+..++.|++.||.|||+   .+|+||||
T Consensus       205 ~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~---~gIiHRDL  281 (566)
T PLN03225        205 KKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHS---TGIVHRDV  281 (566)
T ss_pred             ccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHH---CCEEeCcC
Confidence            2356789999999999999988643210                  11223456789999999999999   79999999


Q ss_pred             ccccEEeCC-CCceeEcCCCchhhcccc--cccccccccccccCCCCC
Q 028725          159 KITDILLDQ-NLVAKISSYNLPLLAENA--EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       159 kp~nilv~~-~~~~~l~Dfg~a~~~~~~--~~~~~~~~~~~~~aPE~~  203 (205)
                      ||+||++++ ++.++|+|||+|+.....  .......+++.|+|||++
T Consensus       282 KP~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~  329 (566)
T PLN03225        282 KPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQY  329 (566)
T ss_pred             CHHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHh
Confidence            999999995 579999999999765432  223445788999999954

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=1.1e-26  Score=183.39  Aligned_cols=169  Identities=15%  Similarity=0.229  Sum_probs=149.8

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCc-EEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGT-FIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~-~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ...+++.+..||-|+||.|-++.....+ .+|+|++++..   ....+.+..|-.++..++.|.|++++-.+.+      
T Consensus       418 ~l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd------  491 (732)
T KOG0614|consen  418 KLSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRD------  491 (732)
T ss_pred             chhhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhcc------
Confidence            3466788889999999999999865433 48999998764   3445567788999999999999999988866      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ....|++||-|-||.|...+..++  .++..+...++..+++|+.|||+   ++|++|||||+|+++|.+|-+||.|||
T Consensus       492 -~kyvYmLmEaClGGElWTiLrdRg--~Fdd~tarF~~acv~EAfeYLH~---k~iIYRDLKPENllLd~~Gy~KLVDFG  565 (732)
T KOG0614|consen  492 -SKYVYMLMEACLGGELWTILRDRG--SFDDYTARFYVACVLEAFEYLHR---KGIIYRDLKPENLLLDNRGYLKLVDFG  565 (732)
T ss_pred             -chhhhhhHHhhcCchhhhhhhhcC--CcccchhhhhHHHHHHHHHHHHh---cCceeccCChhheeeccCCceEEeehh
Confidence             678899999999999999998775  88999999999999999999999   899999999999999999999999999


Q ss_pred             chhhcccccccccccccccccCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      +|+.+..+.+.-..+||++|.|||-
T Consensus       566 FAKki~~g~KTwTFcGTpEYVAPEI  590 (732)
T KOG0614|consen  566 FAKKIGSGRKTWTFCGTPEYVAPEI  590 (732)
T ss_pred             hHHHhccCCceeeecCCcccccchh
Confidence            9999999999999999999999995

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.92  E-value=2.5e-24  Score=161.94  Aligned_cols=150  Identities=15%  Similarity=0.114  Sum_probs=123.4

Q ss_pred             CcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEEeecCCCc
Q 028725           35 GSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT  113 (205)
Q Consensus        35 g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~  113 (205)
                      |.++.||++.. .+++.+|+|.+.....     ..+|...+....|||++++.+.+..       ....+++|||+++++
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~lv~e~~~~~~   71 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSSE-----YSRERLTIIPHCVPNMVCLHKYIVS-------EDSVFLVLQHAEGGK   71 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchhh-----hhhHHHHHHhcCCCceeehhhheec-------CCeEEEEEecCCCCC
Confidence            88999999995 5689999999975431     2234444555679999999998865       568999999999999


Q ss_pred             HHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcccccccccccc
Q 028725          114 LRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTP  193 (205)
Q Consensus       114 L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  193 (205)
                      |.+.+....  .+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++++|||.+.......  ....+
T Consensus        72 L~~~l~~~~--~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~--~~~~~  144 (237)
T cd05576          72 LWSHISKFL--NIPEECVKRWAAEMVVALDALHR---EGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSC--DGEAV  144 (237)
T ss_pred             HHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEEcCCCCEEEecccchhcccccc--ccCCc
Confidence            999987653  58899999999999999999999   799999999999999999999999999886555422  22355


Q ss_pred             cccccCCCCC
Q 028725          194 YSGSINPTNS  203 (205)
Q Consensus       194 ~~~~~aPE~~  203 (205)
                      +..|+|||+.
T Consensus       145 ~~~y~aPE~~  154 (237)
T cd05576         145 ENMYCAPEVG  154 (237)
T ss_pred             CccccCCccc
Confidence            6779999975

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=2.3e-24  Score=190.78  Aligned_cols=161  Identities=26%  Similarity=0.456  Sum_probs=130.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ...+...+.||+|+||.||+|.. .++..||+|.++......    ..|++.+++++||||++++++|.+       ...
T Consensus       689 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~----~~~~~~l~~l~HpnIv~~~~~~~~-------~~~  757 (968)
T PLN00113        689 LSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSIP----SSEIADMGKLQHPNIVKLIGLCRS-------EKG  757 (968)
T ss_pred             HhhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCcccc----HHHHHHHhhCCCCCcceEEEEEEc-------CCC
Confidence            45677888999999999999996 568999999986433222    245788999999999999999876       556


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++||||+++++|.+++.     .+++..+..++.|++.||.|||..+..+++|||+||+||+++.++.+++. ++....
T Consensus       758 ~~lv~Ey~~~g~L~~~l~-----~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~  831 (968)
T PLN00113        758 AYLIHEYIEGKNLSEVLR-----NLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGL  831 (968)
T ss_pred             CEEEEeCCCCCcHHHHHh-----cCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccc
Confidence            899999999999999985     37788999999999999999995444799999999999999988887765 555543


Q ss_pred             cccccccccccccccccCCCCC
Q 028725          182 AENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ....   ....++.+|+|||+.
T Consensus       832 ~~~~---~~~~~t~~y~aPE~~  850 (968)
T PLN00113        832 LCTD---TKCFISSAYVAPETR  850 (968)
T ss_pred             cccC---CCccccccccCcccc
Confidence            3221   223678999999975

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=1.4e-25  Score=175.03  Aligned_cols=172  Identities=15%  Similarity=0.264  Sum_probs=140.3

Q ss_pred             hcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccC-C------cCHHHHHHHHHHHhccCCCcccccccceeeecc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKK-S------HSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~-~------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   94 (205)
                      ..+|-++++||+|+|++||+|. ....+-||+|+-...+ .      ...+-..+|-.+-+.++||.|+++++.+.-   
T Consensus       462 n~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfsl---  538 (775)
T KOG1151|consen  462 NDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSL---  538 (775)
T ss_pred             HHHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeee---
Confidence            4568889999999999999999 4457778888764432 1      112335678899999999999999997754   


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC---CCce
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---NLVA  171 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~---~~~~  171 (205)
                         ....++-|+||++|.+|.-+++.+.  ..++.....|+.||+.+|.||.+ ...+|+|-||||.|||+-+   -|.+
T Consensus       539 ---DtdsFCTVLEYceGNDLDFYLKQhk--lmSEKEARSIiMQiVnAL~YLNE-ikpPIIHYDLKPgNILLv~GtacGeI  612 (775)
T KOG1151|consen  539 ---DTDSFCTVLEYCEGNDLDFYLKQHK--LMSEKEARSIIMQIVNALKYLNE-IKPPIIHYDLKPGNILLVNGTACGEI  612 (775)
T ss_pred             ---ccccceeeeeecCCCchhHHHHhhh--hhhHHHHHHHHHHHHHHHHHHhc-cCCCeeeeccCCccEEEecCccccee
Confidence               2557889999999999988888665  78899999999999999999997 4579999999999999964   3789


Q ss_pred             eEcCCCchhhccccc--------ccccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAE--------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~--------~~~~~~~~~~~~aPE~~  203 (205)
                      ||.|||++++.+.+.        ......||+||++||-+
T Consensus       613 KITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcF  652 (775)
T KOG1151|consen  613 KITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECF  652 (775)
T ss_pred             EeeecchhhhccCCccCcccceeeecccCceeeecCccee
Confidence            999999999887643        23445999999999954

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.92  E-value=2.4e-25  Score=181.35  Aligned_cols=169  Identities=21%  Similarity=0.356  Sum_probs=143.5

Q ss_pred             cCCCcceeeccCcceEEEEEEecC--Cc--EEEEEEecccCCc-CHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLKN--GT--FIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~~--~~--~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ......+.||+|.||.|+.|.|..  |+  .||||++...... ...+|.+|+.++.+++|+|+++++|+.++       
T Consensus       110 e~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-------  182 (1039)
T KOG0199|consen  110 EQIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-------  182 (1039)
T ss_pred             HHHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-------
Confidence            445677889999999999999863  44  5899999766544 67899999999999999999999999975       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                       ..+.+|+|.++.|+|.+.+.+.....+--..+..++.||+.||.||..   ++++||||.++|+++.+.-.+||+|||+
T Consensus       183 -qp~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLes---krlvHRDLAARNlllasprtVKI~DFGL  258 (1039)
T KOG0199|consen  183 -QPAMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLES---KRLVHRDLAARNLLLASPRTVKICDFGL  258 (1039)
T ss_pred             -chhhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhh---hhhhhhhhhhhhheecccceeeeecccc
Confidence             357899999999999999987555678888899999999999999999   8999999999999999999999999999


Q ss_pred             hhhcccccccccc----cccccccCCCCC
Q 028725          179 PLLAENAEKVGHV----TPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~----~~~~~~~aPE~~  203 (205)
                      .+.+...+..+..    ---+-|.|||..
T Consensus       259 mRaLg~ned~Yvm~p~rkvPfAWCaPEsL  287 (1039)
T KOG0199|consen  259 MRALGENEDMYVMAPQRKVPFAWCAPESL  287 (1039)
T ss_pred             eeccCCCCcceEecCCCcCcccccCHhHh
Confidence            9988876544332    223458899864

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=2.3e-25  Score=172.37  Aligned_cols=170  Identities=21%  Similarity=0.294  Sum_probs=140.3

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhccC-CCcccccccceeeecccC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDD   96 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~   96 (205)
                      ...+|..+..||+|+||.|.+|..+ +...+|+|++++.   +..+.+.-+.|-++|.... .|.++++...+..     
T Consensus       347 ~~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQT-----  421 (683)
T KOG0696|consen  347 KATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQT-----  421 (683)
T ss_pred             eecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhh-----
Confidence            3467899999999999999999965 4678999999876   3445555667777877764 5677777776655     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                        .+.+|+||||+.||+|.=.++.-+  .+.+.....++..|+-||-+||+   +||++||||.+||++|.+|.+||.||
T Consensus       422 --mDRLyFVMEyvnGGDLMyhiQQ~G--kFKEp~AvFYAaEiaigLFFLh~---kgIiYRDLKLDNvmLd~eGHiKi~DF  494 (683)
T KOG0696|consen  422 --MDRLYFVMEYVNGGDLMYHIQQVG--KFKEPVAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVMLDSEGHIKIADF  494 (683)
T ss_pred             --hhheeeEEEEecCchhhhHHHHhc--ccCCchhhhhhHHHHHHhhhhhc---CCeeeeeccccceEeccCCceEeeec
Confidence              678999999999999998887543  67778888999999999999999   89999999999999999999999999


Q ss_pred             Cchhhc-ccccccccccccccccCCCCC
Q 028725          177 NLPLLA-ENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~-~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |+++.. ..+......+||+.|+|||-.
T Consensus       495 GmcKEni~~~~TTkTFCGTPdYiAPEIi  522 (683)
T KOG0696|consen  495 GMCKENIFDGVTTKTFCGTPDYIAPEII  522 (683)
T ss_pred             ccccccccCCcceeeecCCCcccccceE
Confidence            999633 333445567999999999964

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=6.1e-25  Score=166.32  Aligned_cols=170  Identities=19%  Similarity=0.282  Sum_probs=145.2

Q ss_pred             HhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEeccc---CCcCHHHHHHHHHHHhcc-CCCcccccccceeeecccC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMK---KSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~   96 (205)
                      ..++|++++.||+|+|+.|-.++ .++.+.+|+|+++++   ...+++.+..|-.+..+. .||.++-+...+..     
T Consensus       248 ~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqt-----  322 (593)
T KOG0695|consen  248 GLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQT-----  322 (593)
T ss_pred             ccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcc-----
Confidence            45789999999999999999999 457889999999876   344556666777777665 58999998887765     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                        .+.+++|.||++||+|.-.++...  .++++....+...|+.+|.|||+   .||++||||.+|+++|..|.+||.|+
T Consensus       323 --esrlffvieyv~ggdlmfhmqrqr--klpeeharfys~ei~lal~flh~---rgiiyrdlkldnvlldaeghikltdy  395 (593)
T KOG0695|consen  323 --ESRLFFVIEYVNGGDLMFHMQRQR--KLPEEHARFYSAEICLALNFLHE---RGIIYRDLKLDNVLLDAEGHIKLTDY  395 (593)
T ss_pred             --cceEEEEEEEecCcceeeehhhhh--cCcHHHhhhhhHHHHHHHHHHhh---cCeeeeeccccceEEccCCceeeccc
Confidence              678999999999999988777665  79999999999999999999999   89999999999999999999999999


Q ss_pred             Cchhhcccc-cccccccccccccCCCCC
Q 028725          177 NLPLLAENA-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~-~~~~~~~~~~~~~aPE~~  203 (205)
                      |+++..-.+ ......+||+.|+|||-.
T Consensus       396 gmcke~l~~gd~tstfcgtpnyiapeil  423 (593)
T KOG0695|consen  396 GMCKEGLGPGDTTSTFCGTPNYIAPEIL  423 (593)
T ss_pred             chhhcCCCCCcccccccCCCcccchhhh
Confidence            999754443 455667999999999953

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.92  E-value=1.2e-23  Score=156.21  Aligned_cols=167  Identities=22%  Similarity=0.411  Sum_probs=143.5

Q ss_pred             CCcceeeccCcceEEEEEEecC-CcEEEEEEecccCCc-CHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEE
Q 028725           26 FDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~~~-~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (205)
                      |.+.+.||.|++|.||++.... ++.+++|.+...... ....+.+|+..++.++|+|++++.+.+..       ....+
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~-------~~~~~   73 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFED-------PEPLY   73 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeec-------CCceE
Confidence            5678899999999999999654 889999999866544 67788899999999999999999988765       46789


Q ss_pred             EEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcc
Q 028725          104 LIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  183 (205)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~  183 (205)
                      +++|++++++|.+++..... .+++...+.++.+++.++.+||+   .+++|+|++|.|++++.++.++|+|||.+....
T Consensus        74 ~v~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~  149 (225)
T smart00221       74 LVMEYCEGGDLFDYLRKKGG-KLSEEEARFYLRQILEALEYLHS---LGIVHRDLKPENILLGMDGLVKLADFGLARFIH  149 (225)
T ss_pred             EEEeccCCCCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeeCceeeEec
Confidence            99999999999999986541 27889999999999999999999   799999999999999999999999999998776


Q ss_pred             ccc--ccccccccccccCCCCC
Q 028725          184 NAE--KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       184 ~~~--~~~~~~~~~~~~aPE~~  203 (205)
                      ...  ......++..|++||..
T Consensus       150 ~~~~~~~~~~~~~~~~~~pe~~  171 (225)
T smart00221      150 RDLAALLKTVKGTPFYLAPEVL  171 (225)
T ss_pred             CcccccccceeccCCcCCHhHh
Confidence            653  33345778889999964

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.91  E-value=2.8e-23  Score=155.56  Aligned_cols=156  Identities=22%  Similarity=0.384  Sum_probs=137.2

Q ss_pred             cceEEEEEEec-CCcEEEEEEecccCCcC-HHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEEeecCCCc
Q 028725           36 SKGQMYRGRLK-NGTFIAIRCLKMKKSHS-TRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT  113 (205)
Q Consensus        36 ~~g~V~~~~~~-~~~~vaiK~~~~~~~~~-~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~  113 (205)
                      +||.||+|... ++..+++|++....... .+.+.+|++.++.++|+|++++.+.+..       ....++++|++++++
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-------~~~~~l~~e~~~~~~   73 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFED-------EDKLYLVMEYCDGGD   73 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheee-------CCEEEEEEeCCCCCC
Confidence            58999999975 48899999997665444 7888999999999999999999998876       568999999999999


Q ss_pred             HHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcccccccccccc
Q 028725          114 LRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTP  193 (205)
Q Consensus       114 L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  193 (205)
                      |.+++....  .+++..++.++.+++.++.+||+   .+++|+||+|+||++++++.++|+|||.+.............+
T Consensus        74 L~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~  148 (244)
T smart00220       74 LFDLLKKRG--RLSEDEARFYARQILSALEYLHS---NGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFVG  148 (244)
T ss_pred             HHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHH---cCeecCCcCHHHeEECCCCcEEEccccceeeeccccccccccC
Confidence            999987654  38889999999999999999999   7999999999999999999999999999988777655556788


Q ss_pred             cccccCCCCC
Q 028725          194 YSGSINPTNS  203 (205)
Q Consensus       194 ~~~~~aPE~~  203 (205)
                      +..|++||..
T Consensus       149 ~~~~~~pE~~  158 (244)
T smart00220      149 TPEYMAPEVL  158 (244)
T ss_pred             CcCCCCHHHH
Confidence            9999999964

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.91  E-value=1.7e-23  Score=152.42  Aligned_cols=142  Identities=12%  Similarity=0.118  Sum_probs=109.5

Q ss_pred             ceeeccCcceEEEEEEecCCcEEEEEEecccCCcC--------------------------HHHHHHHHHHHhccCCCcc
Q 028725           29 SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHS--------------------------TRNFMHHIELISKLRHCHL   82 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~--------------------------~~~~~~e~~~l~~l~~~~i   82 (205)
                      ...||+|++|.||+|...+|+.||+|+++......                          ...+.+|...+..+.++++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            57899999999999997689999999997642110                          1123568888999988887


Q ss_pred             cccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCcccc
Q 028725           83 VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITD  162 (205)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~n  162 (205)
                      .........         ..++||||++++++.......  ..++......++.|++.++.++|..  .|++||||||+|
T Consensus        82 ~~p~~~~~~---------~~~lVmE~~~g~~~~~~~l~~--~~~~~~~~~~i~~~l~~~l~~lH~~--~givHrDlkP~N  148 (190)
T cd05145          82 PVPEPILLK---------KNVLVMEFIGDDGSPAPRLKD--VPLEEEEAEELYEQVVEQMRRLYQE--AGLVHGDLSEYN  148 (190)
T ss_pred             CCceEEEec---------CCEEEEEEecCCCchhhhhhh--ccCCHHHHHHHHHHHHHHHHHHHHh--CCEecCCCChhh
Confidence            544333221         248999999887554332222  2567788889999999999999983  499999999999


Q ss_pred             EEeCCCCceeEcCCCchhhccc
Q 028725          163 ILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       163 ilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      |+++ ++.++|+|||++.....
T Consensus       149 Ill~-~~~~~liDFG~a~~~~~  169 (190)
T cd05145         149 ILYH-DGKPYIIDVSQAVELDH  169 (190)
T ss_pred             EEEE-CCCEEEEEcccceecCC
Confidence            9998 88999999999987664

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=6.8e-26  Score=167.14  Aligned_cols=170  Identities=18%  Similarity=0.299  Sum_probs=134.8

Q ss_pred             CCCcceeeccCcceEEEEEE-ecCCcEEEEEEeccc--CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMK--KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +-+..+.||-|+||.||... .++|+.|++|.+..-  +-...+.+.+|+.+|...+|.|++..++....+-.+.  -..
T Consensus        54 Di~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~df--FqE  131 (449)
T KOG0664|consen   54 DIQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSF--FQE  131 (449)
T ss_pred             cCCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchH--HHH
Confidence            45678899999999999998 567999999988533  2234567889999999999999998877554211100  124


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      +|+++|.+.. +|...|..-  +.++...+.-+.+||++||.|||+   .+|+||||||.|.+|+++...||+|||+++.
T Consensus       132 iYV~TELmQS-DLHKIIVSP--Q~Ls~DHvKVFlYQILRGLKYLHs---A~ILHRDIKPGNLLVNSNCvLKICDFGLARv  205 (449)
T KOG0664|consen  132 LYVLTELMQS-DLHKIIVSP--QALTPDHVKVFVYQILRGLKYLHT---ANILHRDIKPGNLLVNSNCILKICDFGLART  205 (449)
T ss_pred             HHHHHHHHHh-hhhheeccC--CCCCcchhhhhHHHHHhhhHHHhh---cchhhccCCCccEEeccCceEEecccccccc
Confidence            6777787744 777666543  478888888899999999999999   7999999999999999999999999999998


Q ss_pred             cccccccc--cccccccccCCCC
Q 028725          182 AENAEKVG--HVTPYSGSINPTN  202 (205)
Q Consensus       182 ~~~~~~~~--~~~~~~~~~aPE~  202 (205)
                      -+.+....  ...-|.+|.|||.
T Consensus       206 ee~d~~~hMTqEVVTQYYRAPEi  228 (449)
T KOG0664|consen  206 WDQRDRLNMTHEVVTQYYRAPEL  228 (449)
T ss_pred             cchhhhhhhHHHHHHHHhccHHH
Confidence            77765443  3477889999995

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.90  E-value=4.6e-24  Score=176.50  Aligned_cols=152  Identities=21%  Similarity=0.405  Sum_probs=132.2

Q ss_pred             CCCcceeeccCcceEEEEEEe-cCC----cEEEEEEeccc-CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           25 NFDTSAFMGEGSKGQMYRGRL-KNG----TFIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~-~~~----~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ....++.||.|+||+||+|.| ..|    -+||+|++... ..+...++..|+-.+.+++|||+++++++|..       
T Consensus       697 elkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~-------  769 (1177)
T KOG1025|consen  697 ELKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCML-------  769 (1177)
T ss_pred             hhhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhccc-------
Confidence            356678899999999999995 333    36889988544 45567889999999999999999999999985       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                       +.+.||+++++.|+|.+++..++ .++.....+.|..||++||.|||+   ++++||||-++|+||.+...+|+.|||+
T Consensus       770 -s~~qlvtq~mP~G~LlDyvr~hr-~~igsq~lLnw~~QIAkgM~YLe~---qrlVHrdLaaRNVLVksP~hvkitdfgl  844 (1177)
T KOG1025|consen  770 -STLQLVTQLMPLGCLLDYVREHR-DNIGSQDLLNWCYQIAKGMKYLEE---QRLVHRDLAARNVLVKSPNHVKITDFGL  844 (1177)
T ss_pred             -chHHHHHHhcccchHHHHHHHhh-ccccHHHHHHHHHHHHHHHHHHHh---cchhhhhhhhhheeecCCCeEEEEecch
Confidence             34789999999999999998654 578888899999999999999999   8999999999999999999999999999


Q ss_pred             hhhccccccc
Q 028725          179 PLLAENAEKV  188 (205)
Q Consensus       179 a~~~~~~~~~  188 (205)
                      ++....++..
T Consensus       845 a~ll~~d~~e  854 (1177)
T KOG1025|consen  845 AKLLAPDEKE  854 (1177)
T ss_pred             hhccCccccc
Confidence            9988876643

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.89  E-value=6.3e-23  Score=172.64  Aligned_cols=176  Identities=23%  Similarity=0.390  Sum_probs=143.1

Q ss_pred             HHHHHhcCCCcceeeccCcceEEEEEEec----C----CcEEEEEEeccc-CCcCHHHHHHHHHHHhcc-CCCccccccc
Q 028725           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLK----N----GTFIAIRCLKMK-KSHSTRNFMHHIELISKL-RHCHLVSALG   87 (205)
Q Consensus        18 ~~~~~~~~y~~~~~lg~g~~g~V~~~~~~----~----~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l-~~~~i~~~~~   87 (205)
                      .|+...++..+.+.+|+|.||.|++|...    .    ...||+|.++.. ...+.+.+..|+.+++.+ +|+||+.++|
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG  369 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLG  369 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhhee
Confidence            45555666778889999999999999843    1    346899998755 345678899999999998 5999999999


Q ss_pred             ceeeecccCCCCCeEEEEEeecCCCcHHHhhccCC------C--------CCCCHHHHHHHHHHHHHHHHHhhcCCCCce
Q 028725           88 HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA------W--------QSLTWTQRISAAIGVARGIQFLHTGIVPGV  153 (205)
Q Consensus        88 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~------~--------~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i  153 (205)
                      .|..       .+.++++.||+..|+|.+++....      .        ..++...++.++.||+.||.||++   .++
T Consensus       370 ~~t~-------~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~---~~~  439 (609)
T KOG0200|consen  370 ACTQ-------DGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLAS---VPC  439 (609)
T ss_pred             eecc-------CCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhh---CCc
Confidence            9976       678999999999999999997543      0        137888999999999999999999   799


Q ss_pred             eecCCccccEEeCCCCceeEcCCCchhhcccccccc--ccc--ccccccCCCCC
Q 028725          154 FSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVG--HVT--PYSGSINPTNS  203 (205)
Q Consensus       154 ~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~~~--~~~--~~~~~~aPE~~  203 (205)
                      +||||.++||++.++..+||+|||+|+...+.....  ...  --..|||||..
T Consensus       440 vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl  493 (609)
T KOG0200|consen  440 VHRDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESL  493 (609)
T ss_pred             cchhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHh
Confidence            999999999999999999999999998655443222  112  23449999974

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.89  E-value=5.7e-22  Score=145.08  Aligned_cols=161  Identities=25%  Similarity=0.472  Sum_probs=136.5

Q ss_pred             eccCcceEEEEEEec-CCcEEEEEEecccCCc-CHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEEeec
Q 028725           32 MGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYV  109 (205)
Q Consensus        32 lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~  109 (205)
                      ||+|.+|.||++... +++.+++|++...... ....+.+|++.++.++|++++++.+.+..       ....++++|++
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-------~~~~~~~~e~~   73 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFED-------ENHLYLVMEYC   73 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeec-------CCeEEEEEecC
Confidence            689999999999965 4889999999755432 35678899999999999999999998865       46899999999


Q ss_pred             CCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC-CCceeEcCCCchhhccccc-c
Q 028725          110 PNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-NLVAKISSYNLPLLAENAE-K  187 (205)
Q Consensus       110 ~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~-~~~~~l~Dfg~a~~~~~~~-~  187 (205)
                      .+++|.+++.... ..++...++.++.+++.++.+||+   .+++|+||+|.||+++. ++.++|+|||.+....... .
T Consensus        74 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~---~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~  149 (215)
T cd00180          74 EGGSLKDLLKENE-GKLSEDEILRILLQILEGLEYLHS---NGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSL  149 (215)
T ss_pred             CCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcch
Confidence            9899999987652 357889999999999999999999   79999999999999999 8999999999997666543 1


Q ss_pred             cccccccccccCCCCC
Q 028725          188 VGHVTPYSGSINPTNS  203 (205)
Q Consensus       188 ~~~~~~~~~~~aPE~~  203 (205)
                      .....+...|++||..
T Consensus       150 ~~~~~~~~~~~~pe~~  165 (215)
T cd00180         150 LKTIVGTPAYMAPEVL  165 (215)
T ss_pred             hhcccCCCCccChhHh
Confidence            2335778889999864

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.89  E-value=1.6e-23  Score=173.25  Aligned_cols=163  Identities=21%  Similarity=0.314  Sum_probs=128.4

Q ss_pred             CCcceeeccCcce-EEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccC-CCcccccccceeeecccCCCCCeEE
Q 028725           26 FDTSAFMGEGSKG-QMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVSRIF  103 (205)
Q Consensus        26 y~~~~~lg~g~~g-~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~~~~~~~~  103 (205)
                      |...+.+|.|+.| .||.|... |+.||||++-   ........+|+..|+..+ ||||+++++.-.+       ....|
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~ye-~R~VAVKrll---~e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d-------~qF~Y  579 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVYE-GREVAVKRLL---EEFFDFAQREIQLLQESDEHPNVIRYYCSEQD-------RQFLY  579 (903)
T ss_pred             eccHHHcccCCCCcEEEEEeeC-CceehHHHHh---hHhHHHHHHHHHHHHhccCCCceEEEEeeccC-------CceEE
Confidence            4555678888886 68999985 8899999885   234445678999999984 9999999876544       67899


Q ss_pred             EEEeecCCCcHHHhhccC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC---C--CceeEcCC
Q 028725          104 LIFEYVPNGTLRSWISGH--AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---N--LVAKISSY  176 (205)
Q Consensus       104 lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~---~--~~~~l~Df  176 (205)
                      +..|.|.- +|.++++..  ..........+....|++.|+++||.   .+|+||||||.||||+.   +  .+++|+||
T Consensus       580 IalELC~~-sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHs---l~iVHRDLkPQNILI~~~~~~~~~ra~iSDf  655 (903)
T KOG1027|consen  580 IALELCAC-SLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHS---LKIVHRDLKPQNILISVPSADGTLRAKISDF  655 (903)
T ss_pred             EEehHhhh-hHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHh---cccccccCCCceEEEEccCCCcceeEEeccc
Confidence            99999955 999999863  11111114456788999999999999   89999999999999985   3  47899999


Q ss_pred             Cchhhccccc----ccccccccccccCCCCC
Q 028725          177 NLPLLAENAE----KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~----~~~~~~~~~~~~aPE~~  203 (205)
                      |+++....+.    ......||.||+|||+.
T Consensus       656 glsKkl~~~~sS~~r~s~~sGt~GW~APE~L  686 (903)
T KOG1027|consen  656 GLSKKLAGGKSSFSRLSGGSGTSGWQAPEQL  686 (903)
T ss_pred             ccccccCCCcchhhcccCCCCcccccCHHHH
Confidence            9998777654    23345999999999974

>smart00090 RIO RIO-like kinase

Probab=99.88  E-value=4.4e-22  Score=149.31  Aligned_cols=162  Identities=11%  Similarity=0.098  Sum_probs=121.5

Q ss_pred             CCcccccCHHHHHHHhcCCCcceeeccCcceEEEEEE--ecCCcEEEEEEecccCCc-------------------C---
Q 028725            8 LPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGR--LKNGTFIAIRCLKMKKSH-------------------S---   63 (205)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~--~~~~~~vaiK~~~~~~~~-------------------~---   63 (205)
                      +++.....+-.+..-..-|.+.+.||+|++|.||+|.  ..+|..||+|++......                   .   
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (237)
T smart00090       12 LDGRTRLALYSLLNRGILSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRK   91 (237)
T ss_pred             cChHHHHHHHHHHhcCchHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHH
Confidence            4555555556666666679999999999999999998  567999999999754210                   0   


Q ss_pred             --HHHHHHHHHHHhccCCCcc--cccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHH
Q 028725           64 --TRNFMHHIELISKLRHCHL--VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVA  139 (205)
Q Consensus        64 --~~~~~~e~~~l~~l~~~~i--~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~  139 (205)
                        ...+.+|...+..+.+.++  ++++..           ...++|||++++.++........  .........++.|++
T Consensus        92 ~~~~~~~~E~~~L~~L~~~~i~~p~~~~~-----------~~~~lV~E~~~g~~L~~~~~~~~--~~~~~~~~~i~~qi~  158 (237)
T smart00090       92 LVRLWAEKEFRNLQRLYEAGVPVPKPIAW-----------RRNVLVMEFIGGDGLPAPRLKDV--EPEEEEEFELYDDIL  158 (237)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCeeeEe-----------cCceEEEEEecCCcccccccccC--CcchHHHHHHHHHHH
Confidence              1234678999988875332  232221           13479999999988876553332  455556678999999


Q ss_pred             HHHHHhhcCCCCc-eeecCCccccEEeCCCCceeEcCCCchhhccccc
Q 028725          140 RGIQFLHTGIVPG-VFSNNLKITDILLDQNLVAKISSYNLPLLAENAE  186 (205)
Q Consensus       140 ~~l~~lh~~~~~~-i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~  186 (205)
                      .++.+||+   .+ ++|+||||+||+++ ++.++|+|||.+....++.
T Consensus       159 ~~l~~LH~---~g~iiH~Dikp~NIli~-~~~i~LiDFg~a~~~~~~~  202 (237)
T smart00090      159 EEMRKLYK---EGELVHGDLSEYNILVH-DGKVVIIDVSQSVELDHPM  202 (237)
T ss_pred             HHHHHHHh---cCCEEeCCCChhhEEEE-CCCEEEEEChhhhccCCcc
Confidence            99999999   78 99999999999999 8899999999998665543

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.87  E-value=1.6e-22  Score=163.37  Aligned_cols=164  Identities=17%  Similarity=0.202  Sum_probs=134.5

Q ss_pred             hcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccCCcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ...|.....+|.|+|+.|..+. ..+++..++|++.+..    .+..+|+.++... +||||+++.+++.+       +-
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~----~~~~~e~~~~~~~~~h~niv~~~~v~~~-------~~  389 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRA----DDNQDEIPISLLVRDHPNIVKSHDVYED-------GK  389 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheeccccc----cccccccchhhhhcCCCcceeecceecC-------Cc
Confidence            5678888899999999999999 4568889999997552    2223455444444 69999999999976       67


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEe-CCCCceeEcCCCch
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL-DQNLVAKISSYNLP  179 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv-~~~~~~~l~Dfg~a  179 (205)
                      ..|+|||.+.++-+.+.+...+   .....+..|+++++.++.|||.   +|++||||||+|||+ ++.+.++|+|||.+
T Consensus       390 ~~~~v~e~l~g~ell~ri~~~~---~~~~e~~~w~~~lv~Av~~LH~---~gvvhRDLkp~NIL~~~~~g~lrltyFG~a  463 (612)
T KOG0603|consen  390 EIYLVMELLDGGELLRRIRSKP---EFCSEASQWAAELVSAVDYLHE---QGVVHRDLKPGNILLDGSAGHLRLTYFGFW  463 (612)
T ss_pred             eeeeeehhccccHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHHHh---cCeeecCCChhheeecCCCCcEEEEEechh
Confidence            8999999999988877776543   2236777899999999999999   899999999999999 58899999999999


Q ss_pred             hhcccccccccccccccccCCCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNSAR  205 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~~~  205 (205)
                      +..+..  ....+-|..|.|||..++
T Consensus       464 ~~~~~~--~~tp~~t~~y~APEvl~~  487 (612)
T KOG0603|consen  464 SELERS--CDTPALTLQYVAPEVLAI  487 (612)
T ss_pred             hhCchh--hcccchhhcccChhhhcc
Confidence            888775  444588999999998764

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.87  E-value=1.1e-21  Score=142.41  Aligned_cols=171  Identities=16%  Similarity=0.187  Sum_probs=132.1

Q ss_pred             cCHHHHHHHhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCC-Ccccccccceee
Q 028725           14 FSLEELEEATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRH-CHLVSALGHCFE   91 (205)
Q Consensus        14 ~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~-~~i~~~~~~~~~   91 (205)
                      .+++++ ...++|.+.+.||.|+||.+|.|. ..+|..||+|+-+...  .-..+..|..+...+++ .+|+.+..+..+
T Consensus         6 ~s~~~~-iv~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a--~hpqL~yEskvY~iL~~g~GiP~i~~y~~e   82 (341)
T KOG1163|consen    6 GSLEEL-IVGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKA--KHPQLLYESKVYRILQGGVGIPHIRHYGTE   82 (341)
T ss_pred             cchhhh-eeccceEEEEeecCCchhheeeeeeccCCceEEEEeecccC--CCcchhHHHHHHHHhccCCCCchhhhhccc
Confidence            344444 345889999999999999999999 5679999999875432  22345568888888874 566666555533


Q ss_pred             ecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC---CC
Q 028725           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD---QN  168 (205)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~---~~  168 (205)
                             ...-.+||+.+ |.+|++++.--. ..++..+.+-++-|++.-+.|+|.   .+++||||||+|++..   .-
T Consensus        83 -------~~ynvlVMdLL-GPsLEdLfnfC~-R~ftmkTvLMLaDQml~RiEyvH~---r~fiHRDIKPdNFLMGlgrh~  150 (341)
T KOG1163|consen   83 -------KDYNVLVMDLL-GPSLEDLFNFCS-RRFTMKTVLMLADQMLSRIEYVHL---RNFIHRDIKPDNFLMGLGRHC  150 (341)
T ss_pred             -------cccceeeeecc-CccHHHHHHHHh-hhhhHHhHHHHHHHHHHHHHHHHh---hccccccCCccceeecccccc
Confidence                   56678999988 889999987332 268889999999999999999999   8999999999999987   44


Q ss_pred             CceeEcCCCchhhccccc--------ccccccccccccC
Q 028725          169 LVAKISSYNLPLLAENAE--------KVGHVTPYSGSIN  199 (205)
Q Consensus       169 ~~~~l~Dfg~a~~~~~~~--------~~~~~~~~~~~~a  199 (205)
                      ..+.++|||+|+.+.+..        .....+||..|.+
T Consensus       151 ~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYAS  189 (341)
T KOG1163|consen  151 NKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYAS  189 (341)
T ss_pred             ceEEEEeccchhhhccccccccCccccCCccceeeeehh
Confidence            689999999997666543        1222478888764

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.87  E-value=4.2e-22  Score=152.47  Aligned_cols=166  Identities=14%  Similarity=0.230  Sum_probs=133.2

Q ss_pred             hcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccCCcCHHHHHHHHHHHhccC-C-C----cccccccceeeeccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-H-C----HLVSALGHCFECYFD   95 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-~-~----~i~~~~~~~~~~~~~   95 (205)
                      .++|.+...+|+|.||.|-.+. ..++..||+|+++.- ..-.+.-.-|++++.++. + |    -++++.+++-.    
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V-~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdy----  162 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNV-DKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDY----  162 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHH-HHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhc----
Confidence            7899999999999999999998 445788999998632 222333455888888883 2 2    23455454433    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC--------
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ--------  167 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~--------  167 (205)
                         .+..++|+|.+ |.++.+++..+.-.+++...+..++.|+++++.+||+   .+++|-||||+||++.+        
T Consensus       163 ---rghiCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~---~kl~HTDLKPENILfvss~~~~~~~  235 (415)
T KOG0671|consen  163 ---RGHICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHD---LKLTHTDLKPENILFVSSEYFKTYN  235 (415)
T ss_pred             ---cCceEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHh---cceeecCCChheEEEeccceEEEec
Confidence               67899999999 6699999998877889999999999999999999999   69999999999999832        


Q ss_pred             ------------CCceeEcCCCchhhcccccccccccccccccCCCC
Q 028725          168 ------------NLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       168 ------------~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                                  +..++|+|||.|++-.+..  ...+.|..|.|||.
T Consensus       236 ~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~h--s~iVsTRHYRAPEV  280 (415)
T KOG0671|consen  236 PKKKVCFIRPLKSTAIKVIDFGSATFDHEHH--STIVSTRHYRAPEV  280 (415)
T ss_pred             cCCccceeccCCCcceEEEecCCcceeccCc--ceeeeccccCCchh
Confidence                        2347999999998776544  45799999999996

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.86  E-value=2.2e-21  Score=146.64  Aligned_cols=165  Identities=13%  Similarity=0.171  Sum_probs=131.9

Q ss_pred             HHhcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccCCcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ...-+|++++.||+|+||.++.|. .-++..||||.-...  ++...+.-|-+..+.+ ..++|...+-+..       .
T Consensus        25 ~VG~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrk--S~APQLrdEYr~YKlL~g~~GIP~vYYFGq-------e   95 (449)
T KOG1165|consen   25 MVGPHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRK--SEAPQLRDEYRTYKLLGGTEGIPQVYYFGQ-------E   95 (449)
T ss_pred             EecccceeccccccCcceeeecccccccCceEEEEecccc--CCcchHHHHHHHHHHHcCCCCCCceeeecc-------c
Confidence            345689999999999999999999 457999999987544  3455566777777777 4788887654432       2


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC-----CCceeE
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-----NLVAKI  173 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~-----~~~~~l  173 (205)
                      +-.-.+|+|.+ |.+|++++.--. ..++..++.-++.|++.-+.|+|+   +.+|+|||||+|+||..     ...+.+
T Consensus        96 G~~NiLVidLL-GPSLEDLFD~Cg-R~FSvKTV~miA~Qmi~rie~vH~---k~LIYRDIKPdNFLIGrp~~k~~n~Ihi  170 (449)
T KOG1165|consen   96 GKYNILVIDLL-GPSLEDLFDLCG-RRFSVKTVAMIAKQMITRIEYVHE---KDLIYRDIKPDNFLIGRPGTKDANVIHI  170 (449)
T ss_pred             cchhhhhhhhh-CcCHHHHHHHhc-CcccHHhHHHHHHHHHHHHHHHHh---cceeecccCccceeecCCCCCCCceEEE
Confidence            55567899988 889999987333 268899999999999999999999   79999999999999973     356899


Q ss_pred             cCCCchhhccccc--------ccccccccccccC
Q 028725          174 SSYNLPLLAENAE--------KVGHVTPYSGSIN  199 (205)
Q Consensus       174 ~Dfg~a~~~~~~~--------~~~~~~~~~~~~a  199 (205)
                      +|||+|+.+.++.        +.....||..||+
T Consensus       171 iDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMS  204 (449)
T KOG1165|consen  171 IDFGMAKEYRDPKTKQHIPYREHKSLSGTARYMS  204 (449)
T ss_pred             EeccchhhhcCccccccCccccccccccceeeeE
Confidence            9999998887654        2333589999985

>PRK10345 hypothetical protein; Provisional

Probab=99.86  E-value=7e-21  Score=139.82  Aligned_cols=142  Identities=11%  Similarity=0.204  Sum_probs=107.1

Q ss_pred             CCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhcc-----CCCcccccccceeeecccCCCCC
Q 028725           26 FDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-----RHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-----~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      +.-.+.||+|+++.||. ...++.. ++|++........+.+.+|+..++.+     .||||+++++++.+.    .+..
T Consensus         4 L~~~~~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~----~g~g   77 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYA-HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETD----CGTG   77 (210)
T ss_pred             cCCcceecCCCceEEEE-CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeC----CCCe
Confidence            44567899999999995 2223444 68888765555667889999999999     579999999988662    1123


Q ss_pred             eE-EEEEee--cCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHH-HHhhcCCCCceeecCCccccEEeCC----CCcee
Q 028725          101 RI-FLIFEY--VPNGTLRSWISGHAWQSLTWTQRISAAIGVARGI-QFLHTGIVPGVFSNNLKITDILLDQ----NLVAK  172 (205)
Q Consensus       101 ~~-~lv~e~--~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l-~~lh~~~~~~i~h~dlkp~nilv~~----~~~~~  172 (205)
                      .. .+|+||  ..+++|.+++...   .+++.  ..++.+++.++ .|||+   .+|+||||||+||+++.    ++.++
T Consensus        78 ~v~~~I~e~~G~~~~tL~~~l~~~---~~~e~--~~~~~~~L~~l~~yLh~---~~IvhrDlKp~NILl~~~~~~~~~~~  149 (210)
T PRK10345         78 YVYDVIADFDGKPSITLTEFAEQC---RYEED--VAQLRQLLKKLKRYLLD---NRIVTMELKPQNILCQRISESEVIPV  149 (210)
T ss_pred             EEEEEEecCCCCcchhHHHHHHcc---cccHh--HHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEeccCCCCCcEE
Confidence            43 378999  5578999999653   35554  35678888777 89999   79999999999999973    34799


Q ss_pred             EcC-CCchhh
Q 028725          173 ISS-YNLPLL  181 (205)
Q Consensus       173 l~D-fg~a~~  181 (205)
                      |+| ||....
T Consensus       150 LiDg~G~~~~  159 (210)
T PRK10345        150 VCDNIGESTF  159 (210)
T ss_pred             EEECCCCcce
Confidence            999 555444

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.86  E-value=4.7e-21  Score=141.53  Aligned_cols=148  Identities=11%  Similarity=0.107  Sum_probs=115.2

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCH---HH------HHHHHHHHhccCCCcccccccceeee
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST---RN------FMHHIELISKLRHCHLVSALGHCFEC   92 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~---~~------~~~e~~~l~~l~~~~i~~~~~~~~~~   92 (205)
                      ..++|+..+.+|.|+||.||++.. ++..+++|++........   ..      +.+|+..+.++.|++|..+...+...
T Consensus        29 l~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~  107 (232)
T PRK10359         29 LSYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLA  107 (232)
T ss_pred             hhCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeec
Confidence            457899999999999999999765 577899999965432222   22      57888899999999999987765542


Q ss_pred             cccC-CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCce
Q 028725           93 YFDD-SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVA  171 (205)
Q Consensus        93 ~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~  171 (205)
                      .... ...+..+++|||++|.+|.++..      .++    ....+++.++..+|+   .|++|||++|+|+++++++ +
T Consensus       108 ~~~~~~~~~~~~lvmEyi~G~tL~~~~~------~~~----~~~~~i~~~l~~lH~---~gi~H~Dikp~Nili~~~g-i  173 (232)
T PRK10359        108 ERKTLRYAHTYIMLIEYIEGVELNDMPE------ISE----DVKAKIKASIESLHQ---HGMVSGDPHKGNFIVSKNG-L  173 (232)
T ss_pred             ccccccccCCeEEEEEEECCccHHHhhh------ccH----HHHHHHHHHHHHHHH---cCCccCCCChHHEEEeCCC-E
Confidence            1110 11346889999999999988732      222    245689999999999   7999999999999999988 9


Q ss_pred             eEcCCCchhhccc
Q 028725          172 KISSYNLPLLAEN  184 (205)
Q Consensus       172 ~l~Dfg~a~~~~~  184 (205)
                      +|+|||.......
T Consensus       174 ~liDfg~~~~~~e  186 (232)
T PRK10359        174 RIIDLSGKRCTAQ  186 (232)
T ss_pred             EEEECCCcccccc
Confidence            9999998876644

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.86  E-value=5.1e-21  Score=150.17  Aligned_cols=167  Identities=16%  Similarity=0.177  Sum_probs=129.4

Q ss_pred             CCCcceeeccCcceEEEEEEecCC--cEEEEEEecccCCcCHHHHHHHHHHHhccCC----CcccccccceeeecccCCC
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLKNG--TFIAIRCLKMKKSHSTRNFMHHIELISKLRH----CHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~~~--~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~----~~i~~~~~~~~~~~~~~~~   98 (205)
                      +|.+.+.||+|+||.||.+.....  ..+|+|+...........+..|..++..+..    +++..+.+...      ..
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~------~~   92 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGR------ST   92 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEecc------CC
Confidence            899999999999999999996543  4788888876543333367778888888762    56666666552      12


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC-----CceeE
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN-----LVAKI  173 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~-----~~~~l  173 (205)
                      ...-++||+.+ |.+|.++........++..+...++.|++.+|.++|+   .|++||||||+|+.+...     ..+.|
T Consensus        93 ~~~~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~---~G~iHRDiKp~N~~~g~~~~~~~~~~~l  168 (322)
T KOG1164|consen   93 EDFNFIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHS---KGFIHRDIKPENFVVGQSSRSEVRTLYL  168 (322)
T ss_pred             CceeEEEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHh---cCcccCCcCHHHeeecCCCCcccceEEE
Confidence            45778999988 7799998876655689999999999999999999999   899999999999999854     47999


Q ss_pred             cCCCchh--hcc-ccc-------c-cccccccccccCCC
Q 028725          174 SSYNLPL--LAE-NAE-------K-VGHVTPYSGSINPT  201 (205)
Q Consensus       174 ~Dfg~a~--~~~-~~~-------~-~~~~~~~~~~~aPE  201 (205)
                      .|||+++  .+. ...       . .....||..|.++.
T Consensus       169 lDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~  207 (322)
T KOG1164|consen  169 LDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASIN  207 (322)
T ss_pred             EecCCCccccccCCCCcccccCCCCccCCCCccccccHH
Confidence            9999998  321 111       1 12245889998875

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.86  E-value=2.7e-22  Score=150.48  Aligned_cols=170  Identities=16%  Similarity=0.195  Sum_probs=138.9

Q ss_pred             hcCCCcceeeccCcceEEEEEE-ecCCcEEEEEEeccc--CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMK--KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ..+|.-+..++.|.- .|..+. .-.+++|++|.+...  .....+...+|..++..+.|+|+++++.++...... ...
T Consensus        16 ~~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l-~~~   93 (369)
T KOG0665|consen   16 PKRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTL-EEF   93 (369)
T ss_pred             eeeeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccH-HHH
Confidence            578888888998888 566665 335889999988654  233456677899999999999999999877643222 223


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...|+|||++.. +|.+.+..    .++-+++..+++|++.|++|||+   .+|+||||||+||++..+..+||.|||+|
T Consensus        94 ~e~y~v~e~m~~-nl~~vi~~----elDH~tis~i~yq~~~~ik~lhs---~~IihRdLkPsnivv~~~~~lKi~dfg~a  165 (369)
T KOG0665|consen   94 QEVYLVMELMDA-NLCQVILM----ELDHETISYILYQMLCGIKHLHS---AGIIHRDLKPSNIVVNSDCTLKILDFGLA  165 (369)
T ss_pred             HhHHHHHHhhhh-HHHHHHHH----hcchHHHHHHHHHHHHHHHHHHh---cceeecccCcccceecchhheeeccchhh
Confidence            568999999965 99998873    57778999999999999999999   69999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      +....+-.-.....|..|.|||.
T Consensus       166 r~e~~~~~mtpyVvtRyyrapev  188 (369)
T KOG0665|consen  166 RTEDTDFMMTPYVVTRYYRAPEV  188 (369)
T ss_pred             cccCcccccCchhheeeccCchh
Confidence            87776645556789999999995

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.85  E-value=9.2e-21  Score=138.91  Aligned_cols=147  Identities=14%  Similarity=0.141  Sum_probs=112.6

Q ss_pred             HHHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCc----------------------CHHHHHHHHHH
Q 028725           16 LEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH----------------------STRNFMHHIEL   73 (205)
Q Consensus        16 ~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~----------------------~~~~~~~e~~~   73 (205)
                      ..++......|.+.+.||+|+||.||++...+|+.+++|++......                      .......|...
T Consensus         7 ~~~~~~~~~~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~   86 (198)
T cd05144           7 LHTLVKRGVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAA   86 (198)
T ss_pred             HHHHHHcCchhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHH
Confidence            34566666669999999999999999999878999999987643211                      01124567888


Q ss_pred             HhccCCCcc--cccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q 028725           74 ISKLRHCHL--VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP  151 (205)
Q Consensus        74 l~~l~~~~i--~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~  151 (205)
                      +..+.++++  +...+           ....+++|||+++++|......        .....++.+++.++.++|+   .
T Consensus        87 l~~l~~~~i~v~~~~~-----------~~~~~lv~e~~~g~~L~~~~~~--------~~~~~~~~~i~~~l~~lh~---~  144 (198)
T cd05144          87 LKALYEEGFPVPKPID-----------WNRHAVVMEYIDGVELYRVRVL--------EDPEEVLDEILEEIVKAYK---H  144 (198)
T ss_pred             HHHHHHcCCCCCceee-----------cCCceEEEEEeCCcchhhcccc--------ccHHHHHHHHHHHHHHHHH---C
Confidence            888877643  22222           2345899999999998765431        2245678899999999999   7


Q ss_pred             ceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       152 ~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      +++|+||+|+||+++.++.++|+|||++.....
T Consensus       145 gi~H~Dl~p~Nill~~~~~~~liDfg~~~~~~~  177 (198)
T cd05144         145 GIIHGDLSEFNILVDDDEKIYIIDWPQMVSTDH  177 (198)
T ss_pred             CCCcCCCCcccEEEcCCCcEEEEECCccccCCC
Confidence            999999999999999999999999999965554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.85  E-value=2.2e-20  Score=138.11  Aligned_cols=136  Identities=14%  Similarity=0.303  Sum_probs=110.5

Q ss_pred             eeeccCcceEEEEEEecCCcEEEEEEecccCCcC--------HHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           30 AFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHS--------TRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~--------~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      +.||+|++|.||+|.+ +|..+++|.........        ...+.+|+.++..+.++++......+..       ...
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~-------~~~   73 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVD-------PEN   73 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEe-------CCC
Confidence            5789999999999987 57788899765432111        2346789999999999988766655543       346


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .+++|||++|++|.+++....     . ....++.+++.+|.++|+   .+++|+|++|.||+++ ++.++|+|||.+..
T Consensus        74 ~~lv~e~~~G~~L~~~~~~~~-----~-~~~~i~~~i~~~l~~lH~---~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         74 FIIVMEYIEGEPLKDLINSNG-----M-EELELSREIGRLVGKLHS---AGIIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             CEEEEEEeCCcCHHHHHHhcc-----H-HHHHHHHHHHHHHHHHHh---CCcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            789999999999999886532     1 677899999999999999   7999999999999999 78999999999876


Q ss_pred             cc
Q 028725          182 AE  183 (205)
Q Consensus       182 ~~  183 (205)
                      ..
T Consensus       144 ~~  145 (211)
T PRK14879        144 SK  145 (211)
T ss_pred             CC
Confidence            44

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.84  E-value=6e-21  Score=140.75  Aligned_cols=167  Identities=17%  Similarity=0.298  Sum_probs=129.6

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEecC-CcEEEEEEecccCCcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~~-~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .....|.+.+.+|+|.||.+-+++++. ...+++|.+... .....+|.+|...---+ .|.||+.-+++.++      .
T Consensus        21 ~l~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p-~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFq------t   93 (378)
T KOG1345|consen   21 DLEDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRP-QTTQADFVREFHYSFFLSPHQHIIDTYEVAFQ------T   93 (378)
T ss_pred             chhhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcc-hhhHHHHHHHhccceeeccchhhhHHHHHHhh------c
Confidence            345779999999999999999999764 667889988644 34566778877644444 48999988776655      2


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC--CCCceeEcCC
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD--QNLVAKISSY  176 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~--~~~~~~l~Df  176 (205)
                      .+..++++||++.|+|.+-+...   .+.+.....++.|++.|+.|+|+   .+++|||||.+||||-  +..++||+||
T Consensus        94 ~d~YvF~qE~aP~gdL~snv~~~---GigE~~~K~v~~ql~SAi~fMHs---knlVHRdlK~eNiLif~~df~rvKlcDF  167 (378)
T KOG1345|consen   94 SDAYVFVQEFAPRGDLRSNVEAA---GIGEANTKKVFAQLLSAIEFMHS---KNLVHRDLKAENILIFDADFYRVKLCDF  167 (378)
T ss_pred             CceEEEeeccCccchhhhhcCcc---cccHHHHHHHHHHHHHHHHHhhc---cchhhcccccceEEEecCCccEEEeeec
Confidence            45677899999999999988764   47778888899999999999999   7999999999999995  4468999999


Q ss_pred             CchhhcccccccccccccccccCCCC
Q 028725          177 NLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       177 g~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      |+.+....  .......+..|-+||.
T Consensus       168 G~t~k~g~--tV~~~~~~~~y~~pe~  191 (378)
T KOG1345|consen  168 GLTRKVGT--TVKYLEYVNNYHAPEL  191 (378)
T ss_pred             ccccccCc--eehhhhhhcccCCcHH
Confidence            99864443  2222344556677764

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.84  E-value=2.3e-20  Score=135.41  Aligned_cols=153  Identities=13%  Similarity=0.075  Sum_probs=113.6

Q ss_pred             CcceeeccCcceEEEEEEecCCcEEEEEEecccCCc----CHHHHHHHHHHHhccC-CCcccccccceeeecccCCCCCe
Q 028725           27 DTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH----STRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        27 ~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~----~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      .+...|++|+||+|+.+.. .+.+++.+.++....-    ....+.+|+++++++. +++++++++.           +.
T Consensus         5 ~~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~-----------~~   72 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW-----------DG   72 (218)
T ss_pred             ccceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE-----------cC
Confidence            4567899999999997665 5778887777644321    1124778999999995 5778888763           23


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCC-ccccEEeCCCCceeEcCCCchh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNL-KITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dl-kp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      .+++|+|+.|.+|.+.....         ...++.|++.++.++|+   .||+|||| ||.||++++++.++|+|||+|.
T Consensus        73 ~~lvmeyI~G~~L~~~~~~~---------~~~~~~qi~~~L~~lH~---~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~  140 (218)
T PRK12274         73 RHLDRSYLAGAAMYQRPPRG---------DLAYFRAARRLLQQLHR---CGVAHNDLAKEANWLVQEDGSPAVIDFQLAV  140 (218)
T ss_pred             EEEEEeeecCccHHhhhhhh---------hHHHHHHHHHHHHHHHH---CcCccCCCCCcceEEEcCCCCEEEEECCCce
Confidence            68999999998887543211         13467899999999999   79999999 7999999999999999999997


Q ss_pred             hcccccc--------------cccccccccccCCCCC
Q 028725          181 LAENAEK--------------VGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~--------------~~~~~~~~~~~aPE~~  203 (205)
                      .......              ......++++++|+..
T Consensus       141 ~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~  177 (218)
T PRK12274        141 RGNPRARWMRLLAREDLRHLLKHKRMYCPAALTPVER  177 (218)
T ss_pred             ecCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence            5443331              1112456677777653

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.84  E-value=1.3e-20  Score=145.90  Aligned_cols=145  Identities=14%  Similarity=0.312  Sum_probs=123.5

Q ss_pred             HHHHhcCCCcceeeccCcceEEEEEEec----CCcEEEEEEecccCCcCHHHHHHHHHHHhccC-CCcccccccceeeec
Q 028725           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECY   93 (205)
Q Consensus        19 ~~~~~~~y~~~~~lg~g~~g~V~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~   93 (205)
                      +....+.|...++||.|.|+.||++...    ..+.||+|.+...  +....+.+|+++|..+. +.||+++.+.+..  
T Consensus        31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~t--s~p~ri~~El~~L~~~gG~~ni~~~~~~~rn--  106 (418)
T KOG1167|consen   31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRT--SSPSRILNELEMLYRLGGSDNIIKLNGCFRN--  106 (418)
T ss_pred             hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccc--cCchHHHHHHHHHHHhccchhhhcchhhhcc--
Confidence            3445677999999999999999999933    3678999988643  34556788999999985 8999999998865  


Q ss_pred             ccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC-CCcee
Q 028725           94 FDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-NLVAK  172 (205)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~-~~~~~  172 (205)
                           ++...+|+||+++-...+++..     ++...+..+++.++.||.++|.   .||+|||+||+|++.+. -+.-.
T Consensus       107 -----nd~v~ivlp~~~H~~f~~l~~~-----l~~~~i~~Yl~~ll~Al~~~h~---~GIvHRDiKpsNFL~n~~t~rg~  173 (418)
T KOG1167|consen  107 -----NDQVAIVLPYFEHDRFRDLYRS-----LSLAEIRWYLRNLLKALAHLHK---NGIVHRDIKPSNFLYNRRTQRGV  173 (418)
T ss_pred             -----CCeeEEEecccCccCHHHHHhc-----CCHHHHHHHHHHHHHHhhhhhc---cCccccCCCccccccccccCCce
Confidence                 7789999999999999988864     5567888899999999999999   79999999999999984 47789


Q ss_pred             EcCCCchh
Q 028725          173 ISSYNLPL  180 (205)
Q Consensus       173 l~Dfg~a~  180 (205)
                      |.|||+|.
T Consensus       174 LvDFgLA~  181 (418)
T KOG1167|consen  174 LVDFGLAQ  181 (418)
T ss_pred             EEechhHH
Confidence            99999996

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.83  E-value=8.1e-20  Score=133.92  Aligned_cols=133  Identities=16%  Similarity=0.271  Sum_probs=105.0

Q ss_pred             eeccCcceEEEEEEecCCcEEEEEEecccC-Cc-------CHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           31 FMGEGSKGQMYRGRLKNGTFIAIRCLKMKK-SH-------STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        31 ~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~-~~-------~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      .||+|++|.||+|.+ ++..+++|+..... ..       ....+.+|..++..++++++......+..       .+..
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~-------~~~~   72 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVD-------PDNK   72 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-------CCCC
Confidence            379999999999996 47889999865432 11       12456789999999988876554444333       3456


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      +++||+++|++|.+++....  .       .++.+++.+|.++|+   .+++|+|++|.||+++ ++.++++|||++...
T Consensus        73 ~lv~e~~~g~~l~~~~~~~~--~-------~~~~~i~~~l~~lH~---~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~~  139 (199)
T TIGR03724        73 TIVMEYIEGKPLKDVIEEGN--D-------ELLREIGRLVGKLHK---AGIVHGDLTTSNIIVR-DDKLYLIDFGLGKYS  139 (199)
T ss_pred             EEEEEEECCccHHHHHhhcH--H-------HHHHHHHHHHHHHHH---CCeecCCCCcceEEEE-CCcEEEEECCCCcCC
Confidence            89999999999999875432  1       788999999999999   7999999999999999 889999999998765


Q ss_pred             cc
Q 028725          183 EN  184 (205)
Q Consensus       183 ~~  184 (205)
                      ..
T Consensus       140 ~~  141 (199)
T TIGR03724       140 DE  141 (199)
T ss_pred             Cc
Confidence            43

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.82  E-value=1e-19  Score=151.69  Aligned_cols=139  Identities=12%  Similarity=0.186  Sum_probs=108.3

Q ss_pred             cCCCcceeeccCcceEEEEEEecCCcEEEEEEe-ccc-CC------cCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCL-KMK-KS------HSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~-~~~-~~------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      ..|...+.||+|+||.||++.+... .+++|+. .+. ..      ...+.+.+|+.++..++|++++.....+..    
T Consensus       333 ~~~~~~~~iG~G~~g~Vy~~~~~~~-~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~----  407 (535)
T PRK09605        333 RRKIPDHLIGKGAEADIKKGEYLGR-DAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVD----  407 (535)
T ss_pred             cccCccceeccCCcEEEEEEeecCc-cceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEe----
Confidence            4456788999999999999987543 3343432 211 11      123457889999999999998876555443    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                         ....+++|||+++++|.+++.          ....++.+++.+|.+||+   .+++|||+||+||++ .++.++|+|
T Consensus       408 ---~~~~~lv~E~~~g~~L~~~l~----------~~~~~~~~i~~~L~~lH~---~giiHrDlkp~NILl-~~~~~~liD  470 (535)
T PRK09605        408 ---PEEKTIVMEYIGGKDLKDVLE----------GNPELVRKVGEIVAKLHK---AGIVHGDLTTSNFIV-RDDRLYLID  470 (535)
T ss_pred             ---CCCCEEEEEecCCCcHHHHHH----------HHHHHHHHHHHHHHHHHh---CCCccCCCChHHEEE-ECCcEEEEe
Confidence               345789999999999998775          235688999999999999   799999999999999 677999999


Q ss_pred             CCchhhccc
Q 028725          176 YNLPLLAEN  184 (205)
Q Consensus       176 fg~a~~~~~  184 (205)
                      ||+++....
T Consensus       471 FGla~~~~~  479 (535)
T PRK09605        471 FGLGKYSDL  479 (535)
T ss_pred             CcccccCCc
Confidence            999987654

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.82  E-value=6.7e-20  Score=145.62  Aligned_cols=181  Identities=18%  Similarity=0.267  Sum_probs=142.4

Q ss_pred             CCCcccccCHHHHHHHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccC------C
Q 028725            7 GLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR------H   79 (205)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~------~   79 (205)
                      ..+++..+.+.++  .-++|.+....|+|-|++|..|..+ -|..||||++.... .-.+.=..|+++|+.|.      -
T Consensus       417 DaEGYYrv~igE~--LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE-~M~KtGl~EleiLkKL~~AD~Edk  493 (752)
T KOG0670|consen  417 DAEGYYRVRIGEL--LDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNE-VMHKTGLKELEILKKLNDADPEDK  493 (752)
T ss_pred             cccceEEEehhhh--hcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecch-HHhhhhhHHHHHHHHhhccCchhh
Confidence            3566777777775  3578999999999999999999954 38899999997442 12222346899999984      3


Q ss_pred             CcccccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCC
Q 028725           80 CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA-WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNL  158 (205)
Q Consensus        80 ~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dl  158 (205)
                      -++++++..|..       .+.+|+|+|.+ ..+|.++++.-+ ...+....+..++.|+.-||..|-.   .+|+|.||
T Consensus       494 ~Hclrl~r~F~h-------knHLClVFE~L-slNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~---c~vlHaDI  562 (752)
T KOG0670|consen  494 FHCLRLFRHFKH-------KNHLCLVFEPL-SLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKK---CGVLHADI  562 (752)
T ss_pred             hHHHHHHHHhhh-------cceeEEEehhh-hchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHh---cCeeeccc
Confidence            477888777765       78999999999 559999998432 1357778888999999999999999   79999999


Q ss_pred             ccccEEeCCC-CceeEcCCCchhhcccccccccccccccccCCCC
Q 028725          159 KITDILLDQN-LVAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       159 kp~nilv~~~-~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      ||.||||.+. ..+||||||.|....+.+. ..+.-+.-|.|||-
T Consensus       563 KPDNiLVNE~k~iLKLCDfGSA~~~~enei-tPYLVSRFYRaPEI  606 (752)
T KOG0670|consen  563 KPDNILVNESKNILKLCDFGSASFASENEI-TPYLVSRFYRAPEI  606 (752)
T ss_pred             CccceEeccCcceeeeccCccccccccccc-cHHHHHHhccCcce
Confidence            9999999954 6789999999987776443 33556667999984

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.80  E-value=2.8e-18  Score=133.20  Aligned_cols=166  Identities=22%  Similarity=0.420  Sum_probs=138.2

Q ss_pred             CCcceeeccCcceEEEEEEecCCcEEEEEEecccCCc---CHHHHHHHHHHHhccCCC-cccccccceeeecccCCCCCe
Q 028725           26 FDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH---STRNFMHHIELISKLRHC-HLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~~~-~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      |.+.+.||.|+|+.||.+...  ..+++|.+......   ....+.+|...+..+.|+ +++++...+..       ...
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-------~~~   72 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQD-------EGS   72 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEec-------CCE
Confidence            678889999999999999976  77899998766433   367788999999999988 79999887743       444


Q ss_pred             EEEEEeecCCCcHHHhhccCCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC-ceeEcCCCch
Q 028725          102 IFLIFEYVPNGTLRSWISGHAW-QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-VAKISSYNLP  179 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~-~~~l~Dfg~a  179 (205)
                      .+++++++.++++.+++..... ..+.......+..|++.++.|+|.   .+++|||+||+|++++..+ .++++|||.+
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~---~~~~hrd~kp~nil~~~~~~~~~l~dfg~~  149 (384)
T COG0515          73 LYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHS---KGIIHRDIKPENILLDRDGRVVKLIDFGLA  149 (384)
T ss_pred             EEEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeeecCCCCeEEEeccCcc
Confidence            7999999999999977665421 258888899999999999999999   7999999999999999888 7999999999


Q ss_pred             hhccccc-------ccccccccccccCCCCC
Q 028725          180 LLAENAE-------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~-------~~~~~~~~~~~~aPE~~  203 (205)
                      +......       ......++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~  180 (384)
T COG0515         150 KLLPDPGSTSSIPALPSTSVGTPGYMAPEVL  180 (384)
T ss_pred             eecCCCCccccccccccccccccccCCHHHh
Confidence            7555543       23557999999999964

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.79  E-value=9.3e-19  Score=138.02  Aligned_cols=138  Identities=20%  Similarity=0.350  Sum_probs=116.4

Q ss_pred             cCCCcceeeccCcceEEEEEE-ecCCcEEEEEEecccCCcCHHHHHHHHHHHhccC-----C---Ccccccccceeeecc
Q 028725           24 NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-----H---CHLVSALGHCFECYF   94 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-----~---~~i~~~~~~~~~~~~   94 (205)
                      ++|-+.++||=|-|++||+|. .++.+.||+|+++.. ....+....|+.+|++++     +   ..|+++++.|-.   
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA-qhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~Fkh---  153 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSA-QHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKH---  153 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehh-hHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeecccee---
Confidence            679999999999999999999 556778999999733 445566677999999984     2   467888888754   


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN  168 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~  168 (205)
                      .++.+..+++|+|++ |-+|-.+|....-..++...+..|++|++.||.|||+.  .||||-||||+|||+...
T Consensus       154 sGpNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~e--cgIIHTDlKPENvLl~~~  224 (590)
T KOG1290|consen  154 SGPNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRE--CGIIHTDLKPENVLLCST  224 (590)
T ss_pred             cCCCCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHh--cCccccCCCcceeeeecc
Confidence            456678899999999 55999999876656788999999999999999999998  799999999999999754

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.78  E-value=2.8e-18  Score=124.49  Aligned_cols=138  Identities=12%  Similarity=0.191  Sum_probs=94.9

Q ss_pred             ceeeccCcceEEEEEEecCCcEEEEEEecccCCcCH--HH----------------------HHHHHHHHhccCCCc--c
Q 028725           29 SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST--RN----------------------FMHHIELISKLRHCH--L   82 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~--~~----------------------~~~e~~~l~~l~~~~--i   82 (205)
                      .+.||+|+||.||+|...++..||+|++........  ..                      ...|...+..+.+.+  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            568999999999999977899999999865422111  11                      123444444443322  2


Q ss_pred             cccccceeeecccCCCCCeEEEEEeecCCCcHHHh-hccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccc
Q 028725           83 VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW-ISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT  161 (205)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~-~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~  161 (205)
                      .+..+           ....+++||+++++++... +....   .. .....++.+++.++.++|.+  .+++|+||+|+
T Consensus        82 ~~~~~-----------~~~~~lv~e~~~g~~~~~~~l~~~~---~~-~~~~~~~~~~~~~l~~lh~~--~~ivH~Dl~p~  144 (187)
T cd05119          82 PKPID-----------LNRHVLVMEFIGGDGIPAPRLKDVR---LL-EDPEELYDQILELMRKLYRE--AGLVHGDLSEY  144 (187)
T ss_pred             CceEe-----------cCCCEEEEEEeCCCCccChhhhhhh---hc-ccHHHHHHHHHHHHHHHhhc--cCcCcCCCChh
Confidence            22221           1235899999998543211 11110   11 45677899999999999984  59999999999


Q ss_pred             cEEeCCCCceeEcCCCchhhccc
Q 028725          162 DILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       162 nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ||+++ ++.++|+|||.+.....
T Consensus       145 Nili~-~~~~~liDfg~a~~~~~  166 (187)
T cd05119         145 NILVD-DGKVYIIDVPQAVEIDH  166 (187)
T ss_pred             hEEEE-CCcEEEEECcccccccC
Confidence            99999 89999999999976655

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.76  E-value=8.4e-18  Score=117.28  Aligned_cols=138  Identities=13%  Similarity=0.135  Sum_probs=109.7

Q ss_pred             cceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCC--CcccccccceeeecccCCCCCeEEEE
Q 028725           28 TSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRH--CHLVSALGHCFECYFDDSSVSRIFLI  105 (205)
Q Consensus        28 ~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~--~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (205)
                      +.+.+++|.++.||++... +..+++|.......  ...+.+|...+..+++  ..++++......       .+..+++
T Consensus         2 ~~~~i~~g~~~~v~~~~~~-~~~~~iK~~~~~~~--~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~-------~~~~~~v   71 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTK-DEDYVLKINPSREK--GADREREVAILQLLARKGLPVPKVLASGES-------DGWSYLL   71 (155)
T ss_pred             cceecccccccceEEEEec-CCeEEEEecCCCCc--hhHHHHHHHHHHHHHHcCCCCCeEEEEcCC-------CCccEEE
Confidence            4578999999999999975 47899998864433  5668889999999876  477776655432       3578999


Q ss_pred             EeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          106 FEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       106 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      +|++.+..+..+         +......++.+++.++..+|.....+++|+|++|.|+++++.+.++++|||.+.....
T Consensus        72 ~e~~~g~~~~~~---------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~~~  141 (155)
T cd05120          72 MEWIEGETLDEV---------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYGPP  141 (155)
T ss_pred             EEecCCeecccC---------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCCCh
Confidence            999988766653         4456677889999999999985334799999999999999989999999999875543

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.75  E-value=5.7e-19  Score=136.21  Aligned_cols=179  Identities=20%  Similarity=0.267  Sum_probs=141.4

Q ss_pred             CHHHHHHHhcCCCcceeeccCcceEEEEEEecC------CcEEEEEEeccc-CCcCHHHHHHHHHHHhccCCCccccccc
Q 028725           15 SLEELEEATNNFDTSAFMGEGSKGQMYRGRLKN------GTFIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALG   87 (205)
Q Consensus        15 ~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~------~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~   87 (205)
                      ...++.....+++....+.+|.||+||.|.|.+      .+.|.+|.++.. ++.....+..|...+..+.|||+.++.+
T Consensus       275 r~~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~  354 (563)
T KOG1024|consen  275 RLQELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLG  354 (563)
T ss_pred             hHHhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeE
Confidence            344555666778888899999999999998653      345667877644 4455677888999999999999999999


Q ss_pred             ceeeecccCCCCCeEEEEEeecCCCcHHHhhcc------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccc
Q 028725           88 HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISG------HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT  161 (205)
Q Consensus        88 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~  161 (205)
                      ++.+      ....+++++.+..-|+|..++.-      ...+.++...+..++.|++.|+.|||+   ++++|.||.++
T Consensus       355 V~ie------~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~---~~ViHkDiAaR  425 (563)
T KOG1024|consen  355 VSIE------DYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHN---HGVIHKDIAAR  425 (563)
T ss_pred             EEee------ccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHh---cCcccchhhhh
Confidence            9876      25678999999999999999871      122356777788899999999999999   89999999999


Q ss_pred             cEEeCCCCceeEcCCCchhhcccccc----cccccccccccCCCCC
Q 028725          162 DILLDQNLVAKISSYNLPLLAENAEK----VGHVTPYSGSINPTNS  203 (205)
Q Consensus       162 nilv~~~~~~~l~Dfg~a~~~~~~~~----~~~~~~~~~~~aPE~~  203 (205)
                      |++||+...+||+|-.+++-+-...-    .+. --...||+||+.
T Consensus       426 NCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnE-nRPvkWMslEal  470 (563)
T KOG1024|consen  426 NCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNE-NRPVKWMSLEAL  470 (563)
T ss_pred             cceehhheeEEeccchhccccCcccccccCCCC-CCcccccCHHHH
Confidence            99999999999999999986654321    111 223458888864

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=5.9e-18  Score=145.31  Aligned_cols=168  Identities=18%  Similarity=0.208  Sum_probs=120.9

Q ss_pred             HHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccC---CCcccccccceeeeccc
Q 028725           19 LEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR---HCHLVSALGHCFECYFD   95 (205)
Q Consensus        19 ~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~---~~~i~~~~~~~~~~~~~   95 (205)
                      ++.....|.+.+.+|+|+||.||.|...+|+.||+|+-+....=+.-   --.+++.+|+   -+.|+.+......    
T Consensus       693 ~~~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WEfY---I~~q~~~RLk~~~~~~~~~~~~a~~~----  765 (974)
T KOG1166|consen  693 FEVGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWEFY---ICLQVMERLKPQMLPSIMHISSAHVF----  765 (974)
T ss_pred             eeecceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCceeee---ehHHHHHhhchhhhcchHHHHHHHcc----
Confidence            34456779999999999999999999777999999988654322211   0112223333   2344444333322    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC-------CC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD-------QN  168 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~-------~~  168 (205)
                         .+..++|++|.+-|+|.+++...+  ..++.....++.|++..+..||.   .+||||||||+|+++.       ..
T Consensus       766 ---~~~S~lv~ey~~~Gtlld~~N~~~--~m~e~lv~~~~~qml~ive~lH~---~~IIHgDiKPDNfll~~~~~~~~~~  837 (974)
T KOG1166|consen  766 ---QNASVLVSEYSPYGTLLDLINTNK--VMDEYLVMFFSCQMLRIVEHLHA---MGIIHGDIKPDNFLLRREICADSDS  837 (974)
T ss_pred             ---CCcceeeeeccccccHHHhhccCC--CCCchhhhHHHHHHHHHHHHHHh---cceecccCCcceeEeecccCCCCcc
Confidence               455789999999999999998543  78899999999999999999999   7999999999999995       23


Q ss_pred             CceeEcCCCchhh---cccccccccccccccccCCC
Q 028725          169 LVAKISSYNLPLL---AENAEKVGHVTPYSGSINPT  201 (205)
Q Consensus       169 ~~~~l~Dfg~a~~---~~~~~~~~~~~~~~~~~aPE  201 (205)
                      .-++|+|||-|--   ..+...-...++|-++-.+|
T Consensus       838 ~~l~lIDfG~siDm~lfp~~~~F~~~~~td~f~C~E  873 (974)
T KOG1166|consen  838 KGLYLIDFGRSIDMKLFPDGTKFKAVWHTDLFDCIE  873 (974)
T ss_pred             cceEEEecccceeeeEcCCCcEEeeeeccccchhHH
Confidence            4689999999843   33332334445665555554

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.73  E-value=8.7e-17  Score=120.92  Aligned_cols=141  Identities=15%  Similarity=0.193  Sum_probs=103.5

Q ss_pred             ceeec-cCcceEEEEEEecCCcEEEEEEecccC-------------CcCHHHHHHHHHHHhccCCCcc--cccccceeee
Q 028725           29 SAFMG-EGSKGQMYRGRLKNGTFIAIRCLKMKK-------------SHSTRNFMHHIELISKLRHCHL--VSALGHCFEC   92 (205)
Q Consensus        29 ~~~lg-~g~~g~V~~~~~~~~~~vaiK~~~~~~-------------~~~~~~~~~e~~~l~~l~~~~i--~~~~~~~~~~   92 (205)
                      ...|| .|+.|+||.+... +..+++|.+....             ......+.+|+.++..+.++++  +..++.....
T Consensus        36 ~~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         36 ARVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             CceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            34565 7888888888764 7788999885421             1223457789999999998886  4455443221


Q ss_pred             cccCCCCCeEEEEEeecCC-CcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCce
Q 028725           93 YFDDSSVSRIFLIFEYVPN-GTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVA  171 (205)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~  171 (205)
                         .......++|+|++++ .+|.+++...   .++..    .+.+++.++.+||+   .||+|+||||.||+++.++.+
T Consensus       115 ---~~~~~~~~lV~e~l~G~~~L~~~l~~~---~l~~~----~~~~i~~~l~~lH~---~GI~HrDlkp~NILv~~~~~v  181 (239)
T PRK01723        115 ---HGLFYRADILIERIEGARDLVALLQEA---PLSEE----QWQAIGQLIARFHD---AGVYHADLNAHNILLDPDGKF  181 (239)
T ss_pred             ---cCcceeeeEEEEecCCCCCHHHHHhcC---CCCHH----HHHHHHHHHHHHHH---CCCCCCCCCchhEEEcCCCCE
Confidence               0111234699999997 6899887653   34443    35789999999999   799999999999999998999


Q ss_pred             eEcCCCchhhcc
Q 028725          172 KISSYNLPLLAE  183 (205)
Q Consensus       172 ~l~Dfg~a~~~~  183 (205)
                      +|+|||.+....
T Consensus       182 ~LIDfg~~~~~~  193 (239)
T PRK01723        182 WLIDFDRGELRT  193 (239)
T ss_pred             EEEECCCcccCC
Confidence            999999997765

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.70  E-value=1.6e-17  Score=144.58  Aligned_cols=119  Identities=16%  Similarity=0.146  Sum_probs=84.4

Q ss_pred             CcccccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCc
Q 028725           80 CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLK  159 (205)
Q Consensus        80 ~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlk  159 (205)
                      +||..+.+.+-.....+.....++.++|++ +++|.+++.... ..+++..+..++.||+.||.|||+   .+|+|||||
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~---~gIvHrDlK  107 (793)
T PLN00181         33 DYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNPD-RSVDAFECFHVFRQIVEIVNAAHS---QGIVVHNVR  107 (793)
T ss_pred             HHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhccc-ccccHHHHHHHHHHHHHHHHHHHh---CCeeeccCC
Confidence            466666665522222222234577788887 559999997432 468999999999999999999999   799999999


Q ss_pred             cccEEeCC-------------------CCceeEcCCCchhhccccc-----------------ccccccccccccCCCCC
Q 028725          160 ITDILLDQ-------------------NLVAKISSYNLPLLAENAE-----------------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       160 p~nilv~~-------------------~~~~~l~Dfg~a~~~~~~~-----------------~~~~~~~~~~~~aPE~~  203 (205)
                      |+||+|+.                   ++.++++|||+++......                 ......+|.+|||||..
T Consensus       108 P~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~  187 (793)
T PLN00181        108 PSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEED  187 (793)
T ss_pred             chhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceEChhhh
Confidence            99999954                   4556777777775422100                 00113578899999974

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.65  E-value=5.2e-17  Score=138.83  Aligned_cols=165  Identities=14%  Similarity=0.163  Sum_probs=126.3

Q ss_pred             CCCcceeeccCcceEEEEEEecCCcEEEEEEecccC-CcCHHHHHHHHHH--HhccCCCcccccccceeeecccCCCCCe
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK-SHSTRNFMHHIEL--ISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~--l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      .+...+.||.+.|=.|.+|..++|. |++|++-+.. ....+.+.+.++-  ...+++||.+++.-+...       ...
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t-------~kA   95 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQKVLVT-------DKA   95 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHHHHHh-------hHH
Confidence            6888899999999999999988776 8889886554 4445555544332  455689999988766543       345


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh-
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL-  180 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~-  180 (205)
                      .|+|-+|..+ +|.|.+..++  -+...+...|++|++.|+.-+|+   .||+|||||.+||||++-+.+.|+||..-+ 
T Consensus        96 AylvRqyvkh-nLyDRlSTRP--FL~~iEKkWiaFQLL~al~qcH~---~gVcHGDIKsENILiTSWNW~~LtDFAsFKP  169 (1431)
T KOG1240|consen   96 AYLVRQYVKH-NLYDRLSTRP--FLVLIEKKWIAFQLLKALSQCHK---LGVCHGDIKSENILITSWNWLYLTDFASFKP  169 (1431)
T ss_pred             HHHHHHHHhh-hhhhhhccch--HHHHHHHHHHHHHHHHHHHHHHH---cCccccccccceEEEeeechhhhhcccccCC
Confidence            6777788866 9999999886  57777888899999999999999   899999999999999999999999998653 


Q ss_pred             -hcccccc--ccccccccc----ccCCCCC
Q 028725          181 -LAENAEK--VGHVTPYSG----SINPTNS  203 (205)
Q Consensus       181 -~~~~~~~--~~~~~~~~~----~~aPE~~  203 (205)
                       ++.++.+  -.....|.+    |+|||-+
T Consensus       170 tYLPeDNPadf~fFFDTSrRRtCYiAPERF  199 (1431)
T KOG1240|consen  170 TYLPEDNPADFTFFFDTSRRRTCYIAPERF  199 (1431)
T ss_pred             ccCCCCCcccceEEEecCCceeeecChHhh
Confidence             3333322  222333333    8999964

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=2e-16  Score=132.49  Aligned_cols=165  Identities=18%  Similarity=0.262  Sum_probs=122.3

Q ss_pred             CcceeeccCcceEEEEEEec-CCcEEEEEEec-----ccCCc-CHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           27 DTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLK-----MKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        27 ~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~-----~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ...+.+|.|.+|.|+.+... ..+....|.+.     ..... ....+..|..+-..+.|+|++..+..+++       .
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~-------~  393 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQE-------I  393 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhh-------c
Confidence            46678899999977777633 23333333322     11111 11225557777778899999887776665       2


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ......|||+++ +|..++....  .+....+..++.|++.|+.|+|.   .|+.|||+|++|+++..++.++|+|||.+
T Consensus       394 ~~~~~~mE~~~~-Dlf~~~~~~~--~~~~~e~~c~fKqL~~Gv~y~h~---~GiahrdlK~enll~~~~g~lki~Dfg~~  467 (601)
T KOG0590|consen  394 DGILQSMEYCPY-DLFSLVMSNG--KLTPLEADCFFKQLLRGVKYLHS---MGLAHRDLKLENLLVTENGILKIIDFGAA  467 (601)
T ss_pred             ccchhhhhcccH-HHHHHHhccc--ccchhhhhHHHHHHHHHHHHHHh---cCceeccCccccEEEecCCceEEeecCcc
Confidence            233344999999 9999988753  57788889999999999999999   89999999999999999999999999999


Q ss_pred             hhcccccc-----cccccccccccCCCCCC
Q 028725          180 LLAENAEK-----VGHVTPYSGSINPTNSA  204 (205)
Q Consensus       180 ~~~~~~~~-----~~~~~~~~~~~aPE~~~  204 (205)
                      .....+.+     .....|+..|+|||...
T Consensus       468 ~vf~~~~e~~~~~~~g~~gS~pY~apE~~~  497 (601)
T KOG0590|consen  468 SVFRYPWEKNIHESSGIVGSDPYLAPEVLT  497 (601)
T ss_pred             eeeccCcchhhhhhcCcccCCcCcCccccc
Confidence            76555433     23458999999999864

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.64  E-value=1.6e-15  Score=123.16  Aligned_cols=143  Identities=17%  Similarity=0.157  Sum_probs=94.5

Q ss_pred             ceeeccCcceEEEEEEecCCcEEEEEEecccCCcCH----------------------------------------HHHH
Q 028725           29 SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST----------------------------------------RNFM   68 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~----------------------------------------~~~~   68 (205)
                      .+.||.|++|+||+|+.++|+.||||+....-....                                        -++.
T Consensus       122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            368999999999999988999999999854311000                                        0123


Q ss_pred             HHHHHHhccC----CCcccccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHH-HHH
Q 028725           69 HHIELISKLR----HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVAR-GIQ  143 (205)
Q Consensus        69 ~e~~~l~~l~----~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~-~l~  143 (205)
                      +|...+.++.    +.+-+.+-.++.+      ..+..+++|||++|.+|.+...... ...+   ...++..++. .+.
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~------~~~~~vLvmE~i~G~~L~~~~~~~~-~~~~---~~~ia~~~~~~~l~  271 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWD------RTSERVLTMEWIDGIPLSDIAALDE-AGLD---RKALAENLARSFLN  271 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehh------hcCCceEEEEeECCcccccHHHHHh-cCCC---HHHHHHHHHHHHHH
Confidence            3444343332    1111111111111      1234689999999999988765321 1122   2345555555 367


Q ss_pred             HhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          144 FLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       144 ~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      .+|.   .|++|+|++|.||++++++.++++|||++..+++
T Consensus       272 ql~~---~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       272 QVLR---DGFFHADLHPGNIFVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             HHHh---CCceeCCCCcccEEECCCCcEEEEeCCCeeECCH
Confidence            7888   7999999999999999999999999999976664

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.55  E-value=9.8e-15  Score=120.40  Aligned_cols=147  Identities=14%  Similarity=0.148  Sum_probs=91.1

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecC-CcEEEEEEecccCCc--------------------------C--------HH-
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSH--------------------------S--------TR-   65 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~-~~~vaiK~~~~~~~~--------------------------~--------~~-   65 (205)
                      ....|+. +.+|.|++|+||+|..++ |+.||+|+....-..                          .        .+ 
T Consensus       118 ~F~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~  196 (537)
T PRK04750        118 WFDDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKT  196 (537)
T ss_pred             HHHhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHH
Confidence            3455776 789999999999999876 999999999643100                          0        01 


Q ss_pred             -----HHHHHHHHHhccC----CCcccccccceeeecccCCCCCeEEEEEeecCCCcHHHhhc--cCC--CCCCCHHHHH
Q 028725           66 -----NFMHHIELISKLR----HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS--GHA--WQSLTWTQRI  132 (205)
Q Consensus        66 -----~~~~e~~~l~~l~----~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~--~~~~~~~~~~  132 (205)
                           ++.+|...+.++.    +.+.+.+-.++.+      -.+..++||||+.|+.+.+...  ..+  ...+.+....
T Consensus       197 l~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d------~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~  270 (537)
T PRK04750        197 LHDELDLMREAANASQLRRNFEDSDMLYVPEVYWD------YCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVE  270 (537)
T ss_pred             HHHhhCHHHHHHHHHHHHHHccCCCCeecceeecc------cCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHH
Confidence                 1223333333331    1111111111110      1235679999999999987532  211  0113333333


Q ss_pred             HHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC----ceeEcCCCchhhcccc
Q 028725          133 SAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL----VAKISSYNLPLLAENA  185 (205)
Q Consensus       133 ~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~----~~~l~Dfg~a~~~~~~  185 (205)
                      .++.|+.       .   .|++|+|++|.||+++.++    .++++|||++..+++.
T Consensus       271 ~~~~Qif-------~---~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~~  317 (537)
T PRK04750        271 VFFTQVF-------R---DGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNKE  317 (537)
T ss_pred             HHHHHHH-------h---CCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCHH
Confidence            3444433       4   5999999999999999888    9999999999766653

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.53  E-value=6.1e-14  Score=100.03  Aligned_cols=133  Identities=14%  Similarity=0.022  Sum_probs=94.9

Q ss_pred             ceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccc-cccceeeecccCCCCCeEEEEEe
Q 028725           29 SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVS-ALGHCFECYFDDSSVSRIFLIFE  107 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~lv~e  107 (205)
                      .+.++.|..+.||++... ++.+++|+...... ....+..|...+..+...++++ ++...         ....++|||
T Consensus         3 ~~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~P~~~~~~---------~~~~~lv~e   71 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTE-LLINRENEAENSKLAAEAGIGPKLYYFD---------PETGVLITE   71 (170)
T ss_pred             eeecCCcccCceEEEEEC-CeEEEEEeCCCCcc-cccCHHHHHHHHHHHHHhCCCCceEEEe---------CCCCeEEEE
Confidence            467889999999999865 78899998864432 2334577888888886555443 33321         123479999


Q ss_pred             ecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCC--CCceeecCCccccEEeCCCCceeEcCCCchhhcc
Q 028725          108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGI--VPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  183 (205)
Q Consensus       108 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~--~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~  183 (205)
                      +++|.++.+.    .  ..    ......+++.++..||...  ...++|+|++|.||+++ ++.++++||+.+...+
T Consensus        72 ~i~G~~l~~~----~--~~----~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~~~  138 (170)
T cd05151          72 FIEGSELLTE----D--FS----DPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGMND  138 (170)
T ss_pred             ecCCCccccc----c--cc----CHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccCCC
Confidence            9999877643    0  11    1235678999999999931  11259999999999999 6689999999987554

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.51  E-value=5.2e-14  Score=107.26  Aligned_cols=173  Identities=16%  Similarity=0.222  Sum_probs=103.2

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCC----------Ccccccccce
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRH----------CHLVSALGHC   89 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~----------~~i~~~~~~~   89 (205)
                      .++..++.||.|+++.||.+... +++++++|++....   ....+.+.+|......+.+          -.++-.++..
T Consensus        12 r~l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~   91 (288)
T PF14531_consen   12 RTLVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLL   91 (288)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEE
T ss_pred             eEEEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEE
Confidence            45677889999999999999965 58999999985443   3345566666654444221          1111111111


Q ss_pred             eee----cccCCC-CC-----eEEEEEeecCCCcHHHhhc---cCCCC--CCCHHHHHHHHHHHHHHHHHhhcCCCCcee
Q 028725           90 FEC----YFDDSS-VS-----RIFLIFEYVPNGTLRSWIS---GHAWQ--SLTWTQRISAAIGVARGIQFLHTGIVPGVF  154 (205)
Q Consensus        90 ~~~----~~~~~~-~~-----~~~lv~e~~~~~~L~~~~~---~~~~~--~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~  154 (205)
                      .-.    .+.... .+     +.+++++-+ .++|.+++.   .....  .+.......+..|+++..++||.   .|++
T Consensus        92 ~i~~~~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~---~GlV  167 (288)
T PF14531_consen   92 RIPGKPPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHS---YGLV  167 (288)
T ss_dssp             EETTS-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH---TTEE
T ss_pred             EEcCCCcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhh---cceE
Confidence            100    000000 11     235677777 458888865   22111  23333445677899999999999   8999


Q ss_pred             ecCCccccEEeCCCCceeEcCCCchhhcccccccccccccccccCCCC
Q 028725          155 SNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       155 h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      |+||+|+|++++++|.+.|+||+...........  ...+..|.+||.
T Consensus       168 Hgdi~~~nfll~~~G~v~Lg~F~~~~r~g~~~~~--~~~~~~~~PPe~  213 (288)
T PF14531_consen  168 HGDIKPENFLLDQDGGVFLGDFSSLVRAGTRYRC--SEFPVAFTPPEL  213 (288)
T ss_dssp             EST-SGGGEEE-TTS-EEE--GGGEEETTEEEEG--GGS-TTTS-HHH
T ss_pred             ecccceeeEEEcCCCCEEEcChHHHeecCceeec--cCCCcccCChhh
Confidence            9999999999999999999999877655543332  344567888874

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.50  E-value=2.5e-15  Score=122.16  Aligned_cols=157  Identities=17%  Similarity=0.217  Sum_probs=126.3

Q ss_pred             eccCcceEEEEEEe----cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccC-CCcccccccceeeecccCCCCCeEEE
Q 028725           32 MGEGSKGQMYRGRL----KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        32 lg~g~~g~V~~~~~----~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +|+|.||.|+++.-    ..|.-+++|+.++..  .........|-.++..++ ||.++++.-.+..       ....++
T Consensus         2 lg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt-------~~kl~l   74 (612)
T KOG0603|consen    2 LGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQT-------DGKLYL   74 (612)
T ss_pred             CCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeecc-------ccchhH
Confidence            68999999998762    236678888886653  112224445677777776 9999998776655       678999


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ++++..++.+...+....  .+.+.....+...++-++..+|+   .+++|+|+|++||+++.+|.+++.|||+++..-+
T Consensus        75 ~ld~~rgg~lft~l~~~~--~f~~~~~~~~~aelaLald~lh~---l~iiyrd~k~enilld~~Ghi~~tdfglske~v~  149 (612)
T KOG0603|consen   75 ILDFLRGGDLFTRLSKEV--MFDELDVAFYLAELALALDHLHK---LGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVK  149 (612)
T ss_pred             hhhhcccchhhhccccCC--chHHHHHHHHHHHHHHHHhhcch---hHHHHhcccccceeecccCccccCCchhhhHhHh
Confidence            999999988888776654  67777777888899999999999   8999999999999999999999999999987776


Q ss_pred             ccccccccccccccCCCCC
Q 028725          185 AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 ~~~~~~~~~~~~~~aPE~~  203 (205)
                      ....   +||..|||||-.
T Consensus       150 ~~~~---cgt~eymApEI~  165 (612)
T KOG0603|consen  150 EKIA---CGTYEYRAPEII  165 (612)
T ss_pred             hhhc---ccchhhhhhHhh
Confidence            5544   999999999953

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.50  E-value=4.9e-13  Score=96.91  Aligned_cols=138  Identities=9%  Similarity=0.105  Sum_probs=95.0

Q ss_pred             ceeeccCcceEEEEEEecC-------CcEEEEEEecccC------------C----------cCHHHHH----HHHHHHh
Q 028725           29 SAFMGEGSKGQMYRGRLKN-------GTFIAIRCLKMKK------------S----------HSTRNFM----HHIELIS   75 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~~-------~~~vaiK~~~~~~------------~----------~~~~~~~----~e~~~l~   75 (205)
                      ...||.|.-+.||.|.-.+       +..+|+|+++...            .          .....+.    +|...|+
T Consensus         2 ~g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~   81 (197)
T cd05146           2 NGCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLK   81 (197)
T ss_pred             CCccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHH
Confidence            3578999999999998432       4789999874320            0          0011222    6888888


Q ss_pred             ccCCCc--ccccccceeeecccCCCCCeEEEEEeecCCCcHHH-hhccCCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCC
Q 028725           76 KLRHCH--LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRS-WISGHAWQSLTWTQRISAAIGVARGIQFL-HTGIVP  151 (205)
Q Consensus        76 ~l~~~~--i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~-~~~~~~~~~~~~~~~~~i~~~i~~~l~~l-h~~~~~  151 (205)
                      ++...+  +++++..           ..-+++||++.+..+.. .+..   ..++......+..+++.+|..+ |+   .
T Consensus        82 rl~~~Gv~vP~pi~~-----------~~~~lvME~Ig~~~~~~~~Lkd---~~~~~~~~~~i~~~i~~~l~~l~H~---~  144 (197)
T cd05146          82 RMQKAGIPCPEVVVL-----------KKHVLVMSFIGDDQVPAPKLKD---AKLNDEEMKNAYYQVLSMMKQLYKE---C  144 (197)
T ss_pred             HHHHcCCCCCeEEEe-----------cCCEEEEEEcCCCCccchhhhc---cccCHHHHHHHHHHHHHHHHHHHHh---C
Confidence            886443  3444432           24678999997643322 1222   1344455666778999999988 78   6


Q ss_pred             ceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       152 ~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      +++|+||++.||+++ ++.++|+|||.+...+.
T Consensus       145 glVHGDLs~~NIL~~-~~~v~iIDF~qav~~~h  176 (197)
T cd05146         145 NLVHADLSEYNMLWH-DGKVWFIDVSQSVEPTH  176 (197)
T ss_pred             CeecCCCCHHHEEEE-CCcEEEEECCCceeCCC
Confidence            999999999999997 46899999998865554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.48  E-value=5.9e-13  Score=93.84  Aligned_cols=148  Identities=14%  Similarity=0.187  Sum_probs=109.0

Q ss_pred             cceeeccCcceEEEEEEecCCcEEEEEEe-cccCC-------cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           28 TSAFMGEGSKGQMYRGRLKNGTFIAIRCL-KMKKS-------HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        28 ~~~~lg~g~~g~V~~~~~~~~~~vaiK~~-~~~~~-------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .+..+.+|+-+.|+++.+. |+.+++|.- .+.-.       -......+|++.+.++.--+|.-..-.+.+       .
T Consensus        11 ~l~likQGAEArv~~~~~~-Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D-------~   82 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFS-GEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFID-------T   82 (229)
T ss_pred             cceeeeccceeeEeeeccC-CceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEe-------c
Confidence            6788999999999999986 777676654 32211       123456789999999876666544444444       2


Q ss_pred             CeEEEEEeecCC-CcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC---ceeEcC
Q 028725          100 SRIFLIFEYVPN-GTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL---VAKISS  175 (205)
Q Consensus       100 ~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~---~~~l~D  175 (205)
                      ..-.+.|||++| .++.+++...............++.++-+.+.-||.   .+++||||-++||++.+++   .+.++|
T Consensus        83 ~~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~---ndiiHGDLTTSNill~~~~~~~~~~lId  159 (229)
T KOG3087|consen   83 YGGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHD---NDIIHGDLTTSNILLRSDGNQITPILID  159 (229)
T ss_pred             CCCeEEEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhh---CCeecccccccceEEecCCCcCceEEEe
Confidence            345688999976 488888875443345555557889999999999999   5999999999999998665   458999


Q ss_pred             CCchhhccccc
Q 028725          176 YNLPLLAENAE  186 (205)
Q Consensus       176 fg~a~~~~~~~  186 (205)
                      ||++.....++
T Consensus       160 fgls~~s~~~E  170 (229)
T KOG3087|consen  160 FGLSSVSRLPE  170 (229)
T ss_pred             ecchhcccCcc
Confidence            99997665443

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.43  E-value=3.8e-14  Score=105.33  Aligned_cols=167  Identities=21%  Similarity=0.394  Sum_probs=124.7

Q ss_pred             CCCcceeeccCcceEEEEEEecCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      ......+|.+.-.|+.|+|+|+ |..++.|++....  .....+|..|.-.|+...||||+.+++.|..       ...+
T Consensus       191 ~lnl~tkl~e~hsgelwrgrwq-gndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacns-------ppnl  262 (448)
T KOG0195|consen  191 SLNLITKLAESHSGELWRGRWQ-GNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNS-------PPNL  262 (448)
T ss_pred             hhhhhhhhccCCCccccccccc-CcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccC-------CCCc
Confidence            3445566788888999999997 6667778775442  3345677888888999999999999999976       5678


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcee-ecCCccccEEeCCCCceeEcCCCchhh
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVF-SNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~-h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++..|++.|+|...+....+--.+......++..++.|+.|||+-  -+++ .--|....++||++.+++|+ .+-+++
T Consensus       263 v~isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhsl--ep~ipr~~lns~hvmidedltaris-mad~kf  339 (448)
T KOG0195|consen  263 VIISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSL--EPMIPRFYLNSKHVMIDEDLTARIS-MADTKF  339 (448)
T ss_pred             eEeeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhc--chhhhhhhcccceEEecchhhhhee-ccccee
Confidence            8999999999999999876545567788889999999999999984  3443 33588899999999877653 222222


Q ss_pred             cccccccccccccccccCCCCCCC
Q 028725          182 AENAEKVGHVTPYSGSINPTNSAR  205 (205)
Q Consensus       182 ~~~~~~~~~~~~~~~~~aPE~~~~  205 (205)
                      .-+  . ....-.+.||+||...|
T Consensus       340 sfq--e-~gr~y~pawmspealqr  360 (448)
T KOG0195|consen  340 SFQ--E-VGRAYSPAWMSPEALQR  360 (448)
T ss_pred             eee--c-cccccCcccCCHHHHhc
Confidence            221  1 11345568999998765

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.43  E-value=1.5e-12  Score=92.02  Aligned_cols=135  Identities=14%  Similarity=0.237  Sum_probs=99.9

Q ss_pred             eeeccCcceEEEEEEecCCcEEEEEEecccC--CcC------HHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           30 AFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHS------TRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~--~~~------~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ..+++|+-+.++.+.+. |..+++|.-..+.  ...      .....+|..++..++-.+|....-+..+       ...
T Consensus         2 ~~i~~GAEa~i~~~~~~-g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD-------~~~   73 (204)
T COG3642           2 DLIKQGAEAIIYLTDFL-GLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVD-------PDN   73 (204)
T ss_pred             chhhCCcceeEEeeecc-CcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEc-------CCC
Confidence            35789999999999875 5556666543221  111      2345679999998876666554444443       345


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      -.++|||++|..|.+.+...         ...++..+-.-+.-||.   .||+|+||-++|++++... +.++|||++.+
T Consensus        74 ~~I~me~I~G~~lkd~l~~~---------~~~~~r~vG~~vg~lH~---~givHGDLTtsNiIl~~~~-i~~IDfGLg~~  140 (204)
T COG3642          74 GLIVMEYIEGELLKDALEEA---------RPDLLREVGRLVGKLHK---AGIVHGDLTTSNIILSGGR-IYFIDFGLGEF  140 (204)
T ss_pred             CEEEEEEeCChhHHHHHHhc---------chHHHHHHHHHHHHHHh---cCeecCCCccceEEEeCCc-EEEEECCcccc
Confidence            67999999999999888764         14567778888889999   6999999999999998765 99999999986


Q ss_pred             cccc
Q 028725          182 AENA  185 (205)
Q Consensus       182 ~~~~  185 (205)
                      .+..
T Consensus       141 s~~~  144 (204)
T COG3642         141 SDEV  144 (204)
T ss_pred             cccH
Confidence            6643

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.38  E-value=7.2e-13  Score=107.27  Aligned_cols=119  Identities=21%  Similarity=0.356  Sum_probs=97.5

Q ss_pred             HhccCCCcccccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCce
Q 028725           74 ISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGV  153 (205)
Q Consensus        74 l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i  153 (205)
                      |+.+.|.|+.++.|.+.+       +...++|+++++.|+|.+.+.... ..+++.....+++.++.||.|+|.+   +|
T Consensus         1 l~~l~h~n~~~f~g~~~~-------~~~~~~i~~~c~rGsl~D~i~~~~-~~~d~~F~~s~~rdi~~Gl~ylh~s---~i   69 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVD-------GPEMIVIWEYCSRGSLLDILSNED-IKLDYFFILSFIRDISKGLAYLHNS---PI   69 (484)
T ss_pred             CcccchhhhhhheeeEec-------CCceEEEEeeecCccHHhHHhccc-cCccHHHHHHHHHHHHHHHHHHhcC---cc
Confidence            356789999999999988       577899999999999999998754 6789999999999999999999994   55


Q ss_pred             -eecCCccccEEeCCCCceeEcCCCchhhccccc---ccccccccccccCCCCC
Q 028725          154 -FSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       154 -~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                       .|+.++.+|+++|..+.+||.|||+........   ......-..-|.|||..
T Consensus        70 ~~hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPell  123 (484)
T KOG1023|consen   70 GYHGALKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELL  123 (484)
T ss_pred             eeeeeeccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHh
Confidence             999999999999999999999999998775311   11111233346777753

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.35  E-value=2e-11  Score=90.63  Aligned_cols=148  Identities=18%  Similarity=0.251  Sum_probs=103.1

Q ss_pred             eeeccCcceEEEEEEecCCcEEEEEEecccCC-cCHHHHHHHHHHHhccCCCc--ccccccceeeecccCCCCCeEEEEE
Q 028725           30 AFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCH--LVSALGHCFECYFDDSSVSRIFLIF  106 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~--i~~~~~~~~~~~~~~~~~~~~~lv~  106 (205)
                      +.++.|..+.||++...+|+.+++|....... .....+.+|..+++.+.+.+  +++++......    ...+..+++|
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~----~~~~~~~~v~   79 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDP----SVLGTPFYVM   79 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCC----CccCCceEEE
Confidence            56899999999999876668899999865432 24556788999999987644  45555443220    0113568999


Q ss_pred             eecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcC--------------------------------------
Q 028725          107 EYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTG--------------------------------------  148 (205)
Q Consensus       107 e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~--------------------------------------  148 (205)
                      |+++|.++.+.+..   ..++......++.+++..|..||+-                                      
T Consensus        80 e~i~G~~l~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (223)
T cd05154          80 ERVDGRVLRDRLLR---PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPA  156 (223)
T ss_pred             EEeCCEecCCCCCC---CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHH
Confidence            99999887765431   1345555555666666666666631                                      


Q ss_pred             ---------------CCCceeecCCccccEEeCC--CCceeEcCCCchhhccc
Q 028725          149 ---------------IVPGVFSNNLKITDILLDQ--NLVAKISSYNLPLLAEN  184 (205)
Q Consensus       149 ---------------~~~~i~h~dlkp~nilv~~--~~~~~l~Dfg~a~~~~~  184 (205)
                                     ....++|+|+.|.||+++.  ++.+.|+||+.+.....
T Consensus       157 ~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~g~~  209 (223)
T cd05154         157 MERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATLGDP  209 (223)
T ss_pred             HHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEeccccccCCh
Confidence                           1245799999999999998  66789999999875543

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=99.33  E-value=6e-11  Score=90.44  Aligned_cols=147  Identities=14%  Similarity=0.104  Sum_probs=99.1

Q ss_pred             eeccCcceEEEEEEecCCcEEEEEEecccCC-----------cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           31 FMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS-----------HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        31 ~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~-----------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .+-......|....+ +|+.+.+|.......           .....+.+|...+..+...+|....-+.+...-.....
T Consensus        29 ~v~~~~~rrvvr~~~-~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~  107 (268)
T PRK15123         29 VFRELEGRRTLRFEL-AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPAT  107 (268)
T ss_pred             EEecCCCceEEEEEE-CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCcc
Confidence            333333344666655 478899997743321           11124678888888886656654432222111111112


Q ss_pred             CeEEEEEeecCCC-cHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC-------CCce
Q 028725          100 SRIFLIFEYVPNG-TLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-------NLVA  171 (205)
Q Consensus       100 ~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~-------~~~~  171 (205)
                      ...++|+|++++. +|.+++........+......++.+++..+.-||.   .|++|+|+++.||+++.       +..+
T Consensus       108 ~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~---~Gi~HgDL~~~NiLl~~~~~~~~~~~~~  184 (268)
T PRK15123        108 RTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHA---AGINHRDCYICHFLLHLPFPGREEDLKL  184 (268)
T ss_pred             ceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHH---CcCccCCCChhhEEEeccccCCCCCceE
Confidence            3578999999885 89998753221345566677899999999999999   79999999999999985       4689


Q ss_pred             eEcCCCchhh
Q 028725          172 KISSYNLPLL  181 (205)
Q Consensus       172 ~l~Dfg~a~~  181 (205)
                      .++||+.+..
T Consensus       185 ~LIDl~r~~~  194 (268)
T PRK15123        185 SVIDLHRAQI  194 (268)
T ss_pred             EEEECCcccc
Confidence            9999998854

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.32  E-value=3.3e-12  Score=91.56  Aligned_cols=76  Identities=14%  Similarity=0.104  Sum_probs=64.6

Q ss_pred             CcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcccccccccc
Q 028725          112 GTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV  191 (205)
Q Consensus       112 ~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~~~~~  191 (205)
                      |+|.+++..+. ..+++..++.++.|++.||.|||+   .+      ||+||+++.++.+++  ||++.......    .
T Consensus         1 GsL~~~l~~~~-~~l~~~~~~~i~~qi~~~L~~lH~---~~------kp~Nil~~~~~~~~~--fG~~~~~~~~~----~   64 (176)
T smart00750        1 VSLADILEVRG-RPLNEEEIWAVCLQCLRALRELHR---QA------KSGNILLTWDGLLKL--DGSVAFKTPEQ----S   64 (176)
T ss_pred             CcHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHh---cC------CcccEeEcCccceee--ccceEeecccc----C
Confidence            58889887543 469999999999999999999999   45      999999999999999  99988765432    2


Q ss_pred             cccccccCCCCC
Q 028725          192 TPYSGSINPTNS  203 (205)
Q Consensus       192 ~~~~~~~aPE~~  203 (205)
                      .++..|+|||..
T Consensus        65 ~g~~~y~aPE~~   76 (176)
T smart00750       65 RVDPYFMAPEVI   76 (176)
T ss_pred             CCcccccChHHh
Confidence            688999999975

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.30  E-value=2.5e-11  Score=87.64  Aligned_cols=127  Identities=14%  Similarity=0.185  Sum_probs=80.0

Q ss_pred             EEEEEEecCCcEEEEEEecccCC------------c----------C----HHHHHHHHHHHhccCCCc--cccccccee
Q 028725           39 QMYRGRLKNGTFIAIRCLKMKKS------------H----------S----TRNFMHHIELISKLRHCH--LVSALGHCF   90 (205)
Q Consensus        39 ~V~~~~~~~~~~vaiK~~~~~~~------------~----------~----~~~~~~e~~~l~~l~~~~--i~~~~~~~~   90 (205)
                      .||.|...+|..+|+|+......            .          .    .....+|.+.|..+...+  +++++.+. 
T Consensus         1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~-   79 (188)
T PF01163_consen    1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDYN-   79 (188)
T ss_dssp             EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEEE-
T ss_pred             CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEEe-
Confidence            48999987899999998854210            0          0    123467899999997664  44444321 


Q ss_pred             eecccCCCCCeEEEEEeecC--CCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHH-hhcCCCCceeecCCccccEEeCC
Q 028725           91 ECYFDDSSVSRIFLIFEYVP--NGTLRSWISGHAWQSLTWTQRISAAIGVARGIQF-LHTGIVPGVFSNNLKITDILLDQ  167 (205)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~--~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~-lh~~~~~~i~h~dlkp~nilv~~  167 (205)
                                .-.+||||++  |..+..+....    ++......++.+++..+.. +|.   .|++||||++.||++++
T Consensus        80 ----------~~~ivME~I~~~G~~~~~l~~~~----~~~~~~~~~~~~il~~~~~~~~~---~givHGDLs~~NIlv~~  142 (188)
T PF01163_consen   80 ----------RNVIVMEYIGEDGVPLPRLKDVD----LSPEEPKELLEEILEEIIKMLHK---AGIVHGDLSEYNILVDD  142 (188)
T ss_dssp             ----------TTEEEEE--EETTEEGGCHHHCG----GGGSTHHHHHHHHHHHHHHHHHC---TTEEESS-STTSEEEET
T ss_pred             ----------CCEEEEEecCCCccchhhHHhcc----ccchhHHHHHHHHHHHHHHHHHh---cCceecCCChhhEEeec
Confidence                      2469999998  65555433322    1123344566677775544 578   79999999999999998


Q ss_pred             CCceeEcCCCchhhccc
Q 028725          168 NLVAKISSYNLPLLAEN  184 (205)
Q Consensus       168 ~~~~~l~Dfg~a~~~~~  184 (205)
                      + .+.++|||.+....+
T Consensus       143 ~-~~~iIDf~qav~~~~  158 (188)
T PF01163_consen  143 G-KVYIIDFGQAVDSSH  158 (188)
T ss_dssp             T-CEEE--GTTEEETTS
T ss_pred             c-eEEEEecCcceecCC
Confidence            7 999999998865543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.26  E-value=1.8e-12  Score=108.92  Aligned_cols=174  Identities=18%  Similarity=0.203  Sum_probs=130.5

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecC--CcEEEEEEecccC--CcCHHHHHHHHHHHhccC-CCcccccccceeeecccC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKN--GTFIAIRCLKMKK--SHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDD   96 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~--~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~   96 (205)
                      ....|.+.+.||+|+|+.|-......  ...++.|.+....  .........|..+-..+. |+|++.+++...+     
T Consensus        18 ~~~~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~-----   92 (601)
T KOG0590|consen   18 PNSQYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSS-----   92 (601)
T ss_pred             ccccccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCC-----
Confidence            35678999999999999998887533  3345555554332  222333344666666666 9999999987765     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhh-cCCCCceeecCCccccEEeCCCC-ceeEc
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH-TGIVPGVFSNNLKITDILLDQNL-VAKIS  174 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh-~~~~~~i~h~dlkp~nilv~~~~-~~~l~  174 (205)
                        ....++.+++..++++.+.+........+....-.++.|+..++.|+| .   .++.|+|++|+|.+++..+ ..+++
T Consensus        93 --~~~~~~~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~---~~~~h~~ikP~n~~l~~s~~~l~~~  167 (601)
T KOG0590|consen   93 --PRSYLLSLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPE---NGVTHRDIKPSNSLLDESGSALKIA  167 (601)
T ss_pred             --CcccccccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcc---cccccCCCCCccchhccCCCcccCC
Confidence              567889999999999888773222124555666778999999999999 7   7999999999999999998 99999


Q ss_pred             CCCchhhccc-cc---ccccccc-cccccCCCCCCC
Q 028725          175 SYNLPLLAEN-AE---KVGHVTP-YSGSINPTNSAR  205 (205)
Q Consensus       175 Dfg~a~~~~~-~~---~~~~~~~-~~~~~aPE~~~~  205 (205)
                      |||+|..+.. .+   .....+| +..|+|||...+
T Consensus       168 df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~  203 (601)
T KOG0590|consen  168 DFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSG  203 (601)
T ss_pred             CchhhccccccCCcceeeecccCCCCCCCCcccccc
Confidence            9999975555 22   3344578 999999998653

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.22  E-value=1.4e-10  Score=95.87  Aligned_cols=124  Identities=15%  Similarity=0.183  Sum_probs=102.5

Q ss_pred             ecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCC
Q 028725           45 LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQ  124 (205)
Q Consensus        45 ~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~  124 (205)
                      ..++.+|.+..++...........+.++.++.++||||++++.....       ...+|+|+|.+  ..|...++..   
T Consensus        34 k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~-------~~~~ylvTErV--~Pl~~~lk~l---  101 (690)
T KOG1243|consen   34 KADGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEE-------EGTLYLVTERV--RPLETVLKEL---  101 (690)
T ss_pred             eccCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhcc-------cCceEEEeecc--ccHHHHHHHh---
Confidence            44688899999987766445667788899999999999999987755       56899999988  4677777653   


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          125 SLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       125 ~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                        ........+.||+.||.|||+.  .+++|+|++.+.|+|+..|..+|++|.++.....
T Consensus       102 --~~~~v~~Gl~qIl~AL~FL~~d--~~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~  157 (690)
T KOG1243|consen  102 --GKEEVCLGLFQILAALSFLNDD--CNLVHGNVCKDSVFVNESGEWKLGGLELVSKASG  157 (690)
T ss_pred             --HHHHHHHHHHHHHHHHHHHhcc--CCeeeccEeeeeEEEcCCCcEEEeeeEEEecccc
Confidence              3566777899999999999865  6899999999999999999999999998854443

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=99.21  E-value=1.4e-10  Score=86.85  Aligned_cols=153  Identities=12%  Similarity=0.142  Sum_probs=102.2

Q ss_pred             cccccCHHHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccC------------------Cc--C--HHHH
Q 028725           10 AYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK------------------SH--S--TRNF   67 (205)
Q Consensus        10 ~~~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~------------------~~--~--~~~~   67 (205)
                      ++..+.+..+.....-..++..||-|.-+.||.|..+.|.++++|.=....                  .+  .  ....
T Consensus        77 GyD~LAL~~l~~r~~ve~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A  156 (304)
T COG0478          77 GYDALALHALVKRGIVEAIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAA  156 (304)
T ss_pred             chhHHHHHHHHHcChHHhhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHH
Confidence            444445555555445567889999999999999998889999999642211                  00  0  1224


Q ss_pred             HHHHHHHhccCCC--cccccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Q 028725           68 MHHIELISKLRHC--HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFL  145 (205)
Q Consensus        68 ~~e~~~l~~l~~~--~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~l  145 (205)
                      .+|.+.|..+...  .+++.++           .+...++||++.|..|...-..    .-+...   +...|+.-+.-.
T Consensus       157 ~rEf~~L~~L~~~G~~VP~P~~-----------~nRHaVvMe~ieG~eL~~~r~~----~en~~~---il~~il~~~~~~  218 (304)
T COG0478         157 EREFEALQRLYPEGVKVPKPIA-----------WNRHAVVMEYIEGVELYRLRLD----VENPDE---ILDKILEEVRKA  218 (304)
T ss_pred             HHHHHHHHHhhhcCCCCCCccc-----------cccceeeeehcccceeecccCc----ccCHHH---HHHHHHHHHHHH
Confidence            5688888888654  5555554           4567899999988665543210    112222   333344433333


Q ss_pred             hcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcc
Q 028725          146 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  183 (205)
Q Consensus       146 h~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~  183 (205)
                      -.   .|++|+|+++=||+|+++|.+.++||=-+....
T Consensus       219 ~~---~GiVHGDlSefNIlV~~dg~~~vIDwPQ~v~~~  253 (304)
T COG0478         219 YR---RGIVHGDLSEFNILVTEDGDIVVIDWPQAVPIS  253 (304)
T ss_pred             HH---cCccccCCchheEEEecCCCEEEEeCcccccCC
Confidence            34   599999999999999999999999997665443

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.20  E-value=6.1e-11  Score=92.69  Aligned_cols=119  Identities=15%  Similarity=0.215  Sum_probs=83.5

Q ss_pred             CCCcccccccceeeecccC--------------------CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHH
Q 028725           78 RHCHLVSALGHCFECYFDD--------------------SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIG  137 (205)
Q Consensus        78 ~~~~i~~~~~~~~~~~~~~--------------------~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~  137 (205)
                      +||||+++.+.|.+.--.-                    ..+-.+|+||..+.. +|.+++..+.   .+.....-+..|
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~~~---~s~r~~~~~laQ  349 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWTRH---RSYRTGRVILAQ  349 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhcCC---CchHHHHHHHHH
Confidence            5999998887654311100                    124567899998866 9999998763   444455568899


Q ss_pred             HHHHHHHhhcCCCCceeecCCccccEEeC--CCC--ceeEcCCCchhhccccc-------ccccccccccccCCCCC
Q 028725          138 VARGIQFLHTGIVPGVFSNNLKITDILLD--QNL--VAKISSYNLPLLAENAE-------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       138 i~~~l~~lh~~~~~~i~h~dlkp~nilv~--~~~--~~~l~Dfg~a~~~~~~~-------~~~~~~~~~~~~aPE~~  203 (205)
                      +++++.|||+   +|+.|||+|.+||++.  ++.  ...|+|||++---+.-.       .....-|..--||||.+
T Consensus       350 lLEav~hL~~---hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~  423 (598)
T KOG4158|consen  350 LLEAVTHLHK---HGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIA  423 (598)
T ss_pred             HHHHHHHHHH---ccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhh
Confidence            9999999999   8999999999999995  443  56899999874333211       11112344557899865

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=4.2e-12  Score=101.78  Aligned_cols=97  Identities=13%  Similarity=0.272  Sum_probs=83.2

Q ss_pred             eEEEEEeecCCCcHHHhhccC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          101 RIFLIFEYVPNGTLRSWISGH-AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      .+++.|+++.-.+|.+++.++ .....++.....++.|++.++.|  +    +.+|+|+||.||++..+..++|.|||+.
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y--k----~~ihrdlkp~nif~~~d~q~kIgDFgl~  403 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY--K----GLIHRDLKPSNIFFSDDDQLKIGDFGLV  403 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh--c----cchhhhccccccccccchhhhhhhhhhe
Confidence            588999999999999999743 33457778889999999999999  4    8999999999999999999999999998


Q ss_pred             hhccccc-------ccccccccccccCCCCC
Q 028725          180 LLAENAE-------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~-------~~~~~~~~~~~~aPE~~  203 (205)
                      .-.....       ......||..||+|||.
T Consensus       404 ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi  434 (516)
T KOG1033|consen  404 TSQDKDETVAPAAASHTQQVGTLLYMSPEQI  434 (516)
T ss_pred             eecccCCcccchhhhhhhcccccccCCHHHH
Confidence            7666555       45556999999999984

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=99.14  E-value=9.5e-10  Score=88.76  Aligned_cols=144  Identities=17%  Similarity=0.207  Sum_probs=114.3

Q ss_pred             ceEEEEEE-ecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEEeecCC-CcH
Q 028725           37 KGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPN-GTL  114 (205)
Q Consensus        37 ~g~V~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~~L  114 (205)
                      -.+.|++. ..+|..|++|++...+.........-++.++++.|+|++++.+++....+   ++..+++|++|+++ ++|
T Consensus       289 ~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF---~D~SlvlvYDYyP~s~TL  365 (655)
T KOG3741|consen  289 SITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTF---GDLSLVLVYDYYPSSPTL  365 (655)
T ss_pred             cceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhcc---CcceEEEEEecCCCCchH
Confidence            35788888 55799999999965554444344456788999999999999998874333   25678999999986 577


Q ss_pred             HHhhccC-------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          115 RSWISGH-------------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       115 ~~~~~~~-------------~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++.-..             .+...++..+|.++.|+..||.++|+   .|+..+-|.+.+|+++.+.+++|+..|....
T Consensus       366 ~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHs---sGLAck~L~~~kIlv~G~~RIriS~C~i~Dv  442 (655)
T KOG3741|consen  366 YDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHS---SGLACKTLDLKKILVTGKMRIRISGCGIMDV  442 (655)
T ss_pred             HHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHh---cCceeecccHhHeEeeCcceEEEecccceee
Confidence            7775421             12347889999999999999999999   7999999999999999988999999998876


Q ss_pred             ccccc
Q 028725          182 AENAE  186 (205)
Q Consensus       182 ~~~~~  186 (205)
                      ..++.
T Consensus       443 l~~d~  447 (655)
T KOG3741|consen  443 LQEDP  447 (655)
T ss_pred             ecCCC
Confidence            66544

>PRK09902 hypothetical protein; Provisional

Probab=99.12  E-value=4.3e-09  Score=76.80  Aligned_cols=144  Identities=11%  Similarity=0.106  Sum_probs=104.6

Q ss_pred             eccCcceEEEEEEecCCcEEEEEEeccc------CCcCHHHHHHHHHHHhccCCCccc--ccccceeeecccCCCCCeEE
Q 028725           32 MGEGSKGQMYRGRLKNGTFIAIRCLKMK------KSHSTRNFMHHIELISKLRHCHLV--SALGHCFECYFDDSSVSRIF  103 (205)
Q Consensus        32 lg~g~~g~V~~~~~~~~~~vaiK~~~~~------~~~~~~~~~~e~~~l~~l~~~~i~--~~~~~~~~~~~~~~~~~~~~  103 (205)
                      -++|+.+-|+..... |+.+-+|.-...      .+.....|.+|...+..+..-++.  +.. ++ . ..-....-..+
T Consensus        26 ~~rgG~SgV~r~~~~-g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv-f~-~-~~k~~~~~rA~  101 (216)
T PRK09902         26 YRRNGMSGVQCVERN-GKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV-FG-E-AVKIEGEWRAL  101 (216)
T ss_pred             cCCCCcceEEEEEeC-CcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc-ee-e-eeccCCceEEE
Confidence            467899999998765 556777776421      134556789999999998654443  332 11 1 01111233578


Q ss_pred             EEEeecCC-CcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc--eeEcCCCchh
Q 028725          104 LIFEYVPN-GTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV--AKISSYNLPL  180 (205)
Q Consensus       104 lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~--~~l~Dfg~a~  180 (205)
                      ||+|-+++ .+|.+++........+......+..+++..+.-||+   .|+.|+|+.+.||+++.++.  +.++||.-++
T Consensus       102 LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~---~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r  178 (216)
T PRK09902        102 LVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHS---VNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSR  178 (216)
T ss_pred             EEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHhheeecCCCCeeEEEEEhhccc
Confidence            99998864 489888876544456777788899999999999999   79999999999999986666  9999999875


Q ss_pred             hc
Q 028725          181 LA  182 (205)
Q Consensus       181 ~~  182 (205)
                      ..
T Consensus       179 ~~  180 (216)
T PRK09902        179 RR  180 (216)
T ss_pred             hh
Confidence            43

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.11  E-value=7.7e-11  Score=101.43  Aligned_cols=136  Identities=18%  Similarity=0.321  Sum_probs=92.0

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEecC-CcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~~-~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ...++|+.++.+..|++|.||...+++ .+.+|+|.-+ ..           .+++     ||..+.+            
T Consensus        80 p~e~df~~IklisngAygavylvrh~~trqrfa~kiNk-q~-----------lilR-----nilt~a~------------  130 (1205)
T KOG0606|consen   80 PSESDFNTIKLISNGAYGAVYLVRHKETRQRFAMKINK-QN-----------LILR-----NILTFAG------------  130 (1205)
T ss_pred             CCccccceeEeeccCCCCceeeeeccccccchhhcccc-cc-----------hhhh-----ccccccC------------
Confidence            445789999999999999999999764 5567774322 11           1111     2333322            


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                       +.++|      |+=...++.-+  .++..        ++.++.|||+   +||+|||+||+|.+|..-|.+|+.|||++
T Consensus       131 -npfvv------gDc~tllk~~g--~lPvd--------mvla~Eylh~---ygivhrdlkpdnllIT~mGhiKlTDfgLs  190 (1205)
T KOG0606|consen  131 -NPFVV------GDCATLLKNIG--PLPVD--------MVLAVEYLHS---YGIVHRDLKPDNLLITSMGHIKLTDFGLS  190 (1205)
T ss_pred             -Cccee------chhhhhcccCC--CCcch--------hhHHhHhhcc---CCeecCCCCCCcceeeecccccccchhhh
Confidence             23333      33333344322  22222        1678999999   89999999999999999999999999999


Q ss_pred             hhccccc----------------ccccccccccccCCCCCCC
Q 028725          180 LLAENAE----------------KVGHVTPYSGSINPTNSAR  205 (205)
Q Consensus       180 ~~~~~~~----------------~~~~~~~~~~~~aPE~~~~  205 (205)
                      +..-...                .....+||+.|.|||.--|
T Consensus       191 k~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilr  232 (1205)
T KOG0606|consen  191 KKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILR  232 (1205)
T ss_pred             hhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhhhh
Confidence            6433211                2234599999999997543

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.09  E-value=1.7e-09  Score=79.67  Aligned_cols=114  Identities=19%  Similarity=0.220  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEEeecCCC-cHHHhhccCCCCCCCHHHHHHHHHHHHHHH
Q 028725           64 TRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNG-TLRSWISGHAWQSLTWTQRISAAIGVARGI  142 (205)
Q Consensus        64 ~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l  142 (205)
                      .....+|...+..+...+|....-+.....-.+. ....++++|.+++. +|.+++....  ..+......++.+++..+
T Consensus        55 ~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~-~~~s~lite~l~~~~~L~~~~~~~~--~~~~~~~~~ll~~l~~~i  131 (206)
T PF06293_consen   55 RSRAKREWRNLQRLREAGIPTPEPVAYGERRKGG-GYRSYLITEALPGAQDLRDLLQQWE--QLDPSQRRELLRALARLI  131 (206)
T ss_pred             chHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCC-ceeEEEEEEeCCCcccHHHHHHhhc--ccchhhHHHHHHHHHHHH
Confidence            3456778888888876666543333322111111 24568999999874 7999887643  255566778999999999


Q ss_pred             HHhhcCCCCceeecCCccccEEeCCCC---ceeEcCCCchhhcc
Q 028725          143 QFLHTGIVPGVFSNNLKITDILLDQNL---VAKISSYNLPLLAE  183 (205)
Q Consensus       143 ~~lh~~~~~~i~h~dlkp~nilv~~~~---~~~l~Dfg~a~~~~  183 (205)
                      .-||.   .|++|+|+++.||+++.+.   .+.++||+-++...
T Consensus       132 ~~lH~---~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~~  172 (206)
T PF06293_consen  132 AKLHD---AGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFRP  172 (206)
T ss_pred             HHHHH---CcCCCCCCCcccEEEeCCCCceeEEEEcchhceeCC
Confidence            99999   7999999999999999876   89999999887655

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.97  E-value=5.9e-09  Score=86.01  Aligned_cols=143  Identities=12%  Similarity=0.145  Sum_probs=87.9

Q ss_pred             eeeccCcceEEEEEEecCCcEEEEEEecccCCc--------------------------CHH--------------HHHH
Q 028725           30 AFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH--------------------------STR--------------NFMH   69 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~--------------------------~~~--------------~~~~   69 (205)
                      +.++.++-|+||+|+.++|+.||||+....-..                          ...              ++.+
T Consensus       131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHH
Confidence            678999999999999999999999987532100                          000              0223


Q ss_pred             HHHHHhccC-----CCcccccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHH
Q 028725           70 HIELISKLR-----HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQF  144 (205)
Q Consensus        70 e~~~l~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~  144 (205)
                      |...+.++.     .+++. +=.++.+      -.+.-.++|||++|..+.+...... ...+...+.....++.  +..
T Consensus       211 EA~n~~~~~~nf~~~~~v~-VP~V~we------~t~~~VLtmE~i~Gi~i~d~~~l~~-~g~d~k~ia~~~~~~f--~~q  280 (517)
T COG0661         211 EAANAERFRENFKDDPDVY-VPKVYWE------YTTRRVLTMEWIDGIKISDIAALKS-AGIDRKELAELLVRAF--LRQ  280 (517)
T ss_pred             HHHHHHHHHHHcCCCCCeE-eceeehh------ccCCcEEEEEeeCCEecccHHHHHh-cCCCHHHHHHHHHHHH--HHH
Confidence            333333331     12211 1111110      1245679999999988888743222 2444333332222221  122


Q ss_pred             hhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcccc
Q 028725          145 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENA  185 (205)
Q Consensus       145 lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~  185 (205)
                      +-.   .|++|.|..|.||+++.++.+.+.|||+...+++.
T Consensus       281 ~~~---dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~~  318 (517)
T COG0661         281 LLR---DGFFHADPHPGNILVRSDGRIVLLDFGIVGRLDPK  318 (517)
T ss_pred             HHh---cCccccCCCccceEEecCCcEEEEcCcceecCCHH
Confidence            222   39999999999999999999999999999766643

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.88  E-value=3.4e-08  Score=72.49  Aligned_cols=144  Identities=15%  Similarity=0.191  Sum_probs=90.6

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHH---------HHHHHHHHhccCCCcc---cccccce
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRN---------FMHHIELISKLRHCHL---VSALGHC   89 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~---------~~~e~~~l~~l~~~~i---~~~~~~~   89 (205)
                      ..++|...+.+......-|.+-.. +|+.+++|..........+.         ..+.+..+..++..++   ..+..+.
T Consensus        29 ~~~~~~~~kv~k~~~r~~ValIei-~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~~  107 (229)
T PF06176_consen   29 LDNNYKIIKVFKNTKRNYVALIEI-DGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLAA  107 (229)
T ss_pred             HhCCceEEEeecCCCccEEEEEEE-CCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccceeee
Confidence            346788888888777776766665 47899999886543221111         1233333333333222   2222222


Q ss_pred             eeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC
Q 028725           90 FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL  169 (205)
Q Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~  169 (205)
                      .....  .-....+++|||++|..|.++..      +++    .+...+.+++.-+|+   .|++|+|..|.|++++++ 
T Consensus       108 ekk~~--~~~~~~~ll~EYIeG~~l~d~~~------i~e----~~~~ki~~~ikqlH~---~G~~HGD~hpgNFlv~~~-  171 (229)
T PF06176_consen  108 EKKIF--RYTSSYVLLMEYIEGVELNDIED------IDE----DLAEKIVEAIKQLHK---HGFYHGDPHPGNFLVSNN-  171 (229)
T ss_pred             eeeec--cceeEEEEEEEEecCeecccchh------cCH----HHHHHHHHHHHHHHH---cCCccCCCCcCcEEEECC-
Confidence            11111  01245678999999987776532      222    244667788999999   799999999999999865 


Q ss_pred             ceeEcCCCchhhc
Q 028725          170 VAKISSYNLPLLA  182 (205)
Q Consensus       170 ~~~l~Dfg~a~~~  182 (205)
                      .++++|++..+..
T Consensus       172 ~i~iID~~~k~~~  184 (229)
T PF06176_consen  172 GIRIIDTQGKRMS  184 (229)
T ss_pred             cEEEEECcccccc
Confidence            4899999877543

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.86  E-value=3.8e-09  Score=86.22  Aligned_cols=168  Identities=15%  Similarity=0.155  Sum_probs=123.6

Q ss_pred             cCCCcceeecc--CcceEEEEEEe--c-CCcEEEEEEeccc--CCcCHHHHHHHHHHHhccC-CCcccccccceeeeccc
Q 028725           24 NNFDTSAFMGE--GSKGQMYRGRL--K-NGTFIAIRCLKMK--KSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFD   95 (205)
Q Consensus        24 ~~y~~~~~lg~--g~~g~V~~~~~--~-~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~   95 (205)
                      ..+.+...+|.  |.+|.||.+..  . ++..+++|.-+..  .+.....-.+|+.....++ |++.++....+..    
T Consensus       114 ~~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~----  189 (524)
T KOG0601|consen  114 QRFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEG----  189 (524)
T ss_pred             hhcccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCccccc----
Confidence            45677788899  99999999885  2 4778888874433  2344444456666666664 8888885554433    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHH----HHHHhhcCCCCceeecCCccccEEeCCC-Cc
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVAR----GIQFLHTGIVPGVFSNNLKITDILLDQN-LV  170 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~----~l~~lh~~~~~~i~h~dlkp~nilv~~~-~~  170 (205)
                         .+..++-+|.+ +.+|.++...-. ..++...++....+...    |+.++|.   ..++|.|+||+|++...+ ..
T Consensus       190 ---~~~lfiqtE~~-~~sl~~~~~~~~-~~~p~~~l~~~~~~~~~~~~~al~~~hs---~~~~~~~~kp~~i~~~~~~~s  261 (524)
T KOG0601|consen  190 ---SGILFIQTELC-GESLQSYCHTPC-NFLPDNLLWNSLRDWLSRDVTALSHLHS---NNIVHDDLKPANIFTTSDWTS  261 (524)
T ss_pred             ---CCcceeeeccc-cchhHHhhhccc-ccCCchhhhhHHhhhhhcccccccccCC---Ccccccccchhheecccccce
Confidence               56778888887 468877765432 24677778888888888    9999999   699999999999999988 89


Q ss_pred             eeEcCCCchhhcccccc------cccccccccccCCCCC
Q 028725          171 AKISSYNLPLLAENAEK------VGHVTPYSGSINPTNS  203 (205)
Q Consensus       171 ~~l~Dfg~a~~~~~~~~------~~~~~~~~~~~aPE~~  203 (205)
                      +++.|||+...+.+..-      .....+..-|++||..
T Consensus       262 ~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~  300 (524)
T KOG0601|consen  262 CKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELL  300 (524)
T ss_pred             eecCCcceeEEccCCccccceeeeecCCCCceEeChhhh
Confidence            99999999876666541      1222677889999863

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.76  E-value=1.9e-07  Score=69.46  Aligned_cols=157  Identities=12%  Similarity=0.171  Sum_probs=97.5

Q ss_pred             cccCHHHHHHHhcCCCcce---eeccCcceEEEEEEecCCcEEEEEEecccCCcC-------------------HH----
Q 028725           12 RTFSLEELEEATNNFDTSA---FMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHS-------------------TR----   65 (205)
Q Consensus        12 ~~~~~~~~~~~~~~y~~~~---~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~-------------------~~----   65 (205)
                      ...+++.+....++..+..   .|++|.-+.||+|...++..+|+|+++......                   ..    
T Consensus        33 D~~t~~~l~~L~~rg~i~~~~g~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~  112 (268)
T COG1718          33 DKRTLETLRRLLSRGVITELVGCISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVF  112 (268)
T ss_pred             hhHHHHHHHHHhcCCceeeeEeeecCCcceEEEeeccCCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHH
Confidence            3445556666666665555   456788889999997778999999986532111                   11    


Q ss_pred             -HHHHHHHHHhccCCCcc--cccccceeeecccCCCCCeEEEEEeecCCC-cHHHhhccCCCCCCCHHHHHHHHHHHHHH
Q 028725           66 -NFMHHIELISKLRHCHL--VSALGHCFECYFDDSSVSRIFLIFEYVPNG-TLRSWISGHAWQSLTWTQRISAAIGVARG  141 (205)
Q Consensus        66 -~~~~e~~~l~~l~~~~i--~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~i~~~i~~~  141 (205)
                       ....|...|.++...++  ++.+.+.           .-.++||++... .-.-.+..-   .+.......+..++++.
T Consensus       113 ~W~~kEf~NL~R~~eAGVrvP~Pi~~~-----------~nVLvMEfIg~~g~pAP~LkDv---~~e~~e~~~~~~~~v~~  178 (268)
T COG1718         113 AWARKEFRNLKRAYEAGVRVPEPIAFR-----------NNVLVMEFIGDDGLPAPRLKDV---PLELEEAEGLYEDVVEY  178 (268)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCceeec-----------CCeEEEEeccCCCCCCCCcccC---CcCchhHHHHHHHHHHH
Confidence             12346666666654432  3333322           346899999542 111112111   12222344455566666


Q ss_pred             HHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcccc
Q 028725          142 IQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENA  185 (205)
Q Consensus       142 l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~  185 (205)
                      +.-|-..  .+++|+||+.=|||+. ++.+.++|||-|....++
T Consensus       179 ~~~l~~~--a~LVHgDLSEyNiL~~-~~~p~iID~~QaV~~~hp  219 (268)
T COG1718         179 MRRLYKE--AGLVHGDLSEYNILVH-DGEPYIIDVSQAVTIDHP  219 (268)
T ss_pred             HHHHHHh--cCcccccchhhheEEE-CCeEEEEECccccccCCC
Confidence            6544442  5999999999999999 889999999998766654

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.74  E-value=2.7e-08  Score=76.39  Aligned_cols=129  Identities=19%  Similarity=0.264  Sum_probs=93.1

Q ss_pred             HHhccCCCcccccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q 028725           73 LISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH--AWQSLTWTQRISAAIGVARGIQFLHTGIV  150 (205)
Q Consensus        73 ~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lh~~~~  150 (205)
                      .|-++.|.||+++..++-+...  .......+++||++.|++.+++++-  ....+.......|+-||+.||.|||. +.
T Consensus       120 nllqlvHsnlvkfH~yw~d~K~--~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs-~~  196 (458)
T KOG1266|consen  120 NLLQLVHSNLVKFHKYWTDKKY--EEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHS-CD  196 (458)
T ss_pred             HHHHHHHHHHHHHHHhhccccc--ccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhc-cC
Confidence            4555679999998877655332  2245678899999999999999842  22356677777899999999999998 45


Q ss_pred             CceeecCCccccEEeCCCCceeEcCCCchh--hcc---cccccccccccccccCCCCCC
Q 028725          151 PGVFSNNLKITDILLDQNLVAKISSYNLPL--LAE---NAEKVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       151 ~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~--~~~---~~~~~~~~~~~~~~~aPE~~~  204 (205)
                      .+++|+++-.+.|++..++.+++.--.-..  ..-   .........+..+|.+||+.+
T Consensus       197 PpiihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~  255 (458)
T KOG1266|consen  197 PPIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGT  255 (458)
T ss_pred             CccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCc
Confidence            689999999999999999988875433221  110   111223346788899998753

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.67  E-value=2.2e-07  Score=76.79  Aligned_cols=141  Identities=13%  Similarity=0.158  Sum_probs=86.4

Q ss_pred             ceeeccCcceEEEEEEecCCcEEEEEEecccCCcC-----------------------H--------H------HHHHHH
Q 028725           29 SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHS-----------------------T--------R------NFMHHI   71 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~-----------------------~--------~------~~~~e~   71 (205)
                      .+.|+..+.|+||+|+.++|+.||+|+-+..-...                       .        +      +|.+|.
T Consensus       166 ~~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA  245 (538)
T KOG1235|consen  166 EEPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEA  245 (538)
T ss_pred             cchhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHH
Confidence            36789999999999999899999999865321100                       0        0      022233


Q ss_pred             HHHhc----cCCCc------ccccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHH
Q 028725           72 ELISK----LRHCH------LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARG  141 (205)
Q Consensus        72 ~~l~~----l~~~~------i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~  141 (205)
                      +...+    +.|-+      |++++.-+         ...-.++|||++|..+.+.-.-.. ...+...+..-+.+...-
T Consensus       246 ~Nae~~~~~f~~~~~~~~V~VP~Vy~~~---------st~RVLtME~~~G~~i~Dl~~i~~-~gi~~~~i~~~l~~~~~~  315 (538)
T KOG1235|consen  246 KNAERFRENFKDFSLLTYVLVPKVYWDL---------STKRVLTMEYVDGIKINDLDAIDK-RGISPHDILNKLVEAYLE  315 (538)
T ss_pred             HhHHHHHHHHHhcccccceeCCeehhhc---------CcceEEEEEecCCccCCCHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence            22222    22333      33333322         346789999999987666533111 134444333333322221


Q ss_pred             HHHhhcCCCCceeecCCccccEEeCC----CCceeEcCCCchhhccc
Q 028725          142 IQFLHTGIVPGVFSNNLKITDILLDQ----NLVAKISSYNLPLLAEN  184 (205)
Q Consensus       142 l~~lh~~~~~~i~h~dlkp~nilv~~----~~~~~l~Dfg~a~~~~~  184 (205)
                      +- ++    .|++|.|-.|.||++++    ++.+.+.|||+...+..
T Consensus       316 qI-f~----~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~  357 (538)
T KOG1235|consen  316 QI-FK----TGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISH  357 (538)
T ss_pred             HH-Hh----cCCccCCCCCCcEEEecCCCCCccEEEEcccccccccH
Confidence            11 22    48999999999999994    56899999999876654

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.67  E-value=6.1e-07  Score=67.08  Aligned_cols=142  Identities=10%  Similarity=0.094  Sum_probs=81.8

Q ss_pred             eeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcc--cccccceeeecccCCCCCeEEEEEe
Q 028725           30 AFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL--VSALGHCFECYFDDSSVSRIFLIFE  107 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i--~~~~~~~~~~~~~~~~~~~~~lv~e  107 (205)
                      ..|++|..+.||+.   .+..+++|.....  .......+|.+.++.+..-++  ++.+.+...       .+...++||
T Consensus         7 ~~i~~G~t~~~y~~---~~~~~VlR~~~~~--~~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~-------~~~~glv~e   74 (226)
T TIGR02172         7 TQTGEGGNGESYTH---KTGKWMLKLYNPG--FDKETIKREFDASRKVFSLGIPTPHPFDLVED-------GGRLGLIYE   74 (226)
T ss_pred             eeecCCCCcceeEe---cCCCEEEEeCCCC--CCHHHHHHHHHHHHHHHHcCCCCCceEEEEec-------CCeeeeeee
Confidence            57899999999984   2556788888632  234556889998888864444  344444422       445678999


Q ss_pred             ecCCCc-HHHhh--------------cc------C-CCCCCCHHHHHH-HHH----------HHHHH-HHHhhc-CCCCc
Q 028725          108 YVPNGT-LRSWI--------------SG------H-AWQSLTWTQRIS-AAI----------GVARG-IQFLHT-GIVPG  152 (205)
Q Consensus       108 ~~~~~~-L~~~~--------------~~------~-~~~~~~~~~~~~-i~~----------~i~~~-l~~lh~-~~~~~  152 (205)
                      +++|.+ +...+              ..      . ............ +..          .+... ..+|.. .....
T Consensus        75 ~i~G~~~~~~~~~~~~~~~~~l~~~la~~l~~lH~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~  154 (226)
T TIGR02172        75 LIVGKRSFSRIISDNPSRLEEIAKIFAEMAKKLHSTKCDTSTFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTST  154 (226)
T ss_pred             ecCCccchhhhhcCCHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCCc
Confidence            998853 11111              00      0 000111010000 000          01111 112221 11245


Q ss_pred             eeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          153 VFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       153 i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ++|+|+.|.|+++++++ +.++||+.+...+.
T Consensus       155 ~~HgD~~~~Nii~~~~~-~~iIDwe~a~~Gdp  185 (226)
T TIGR02172       155 CLHGDFQIGNLITSGKG-TYWIDLGDFGYGNP  185 (226)
T ss_pred             eEecCCCCCcEEEcCCC-cEEEechhcCcCCH
Confidence            68999999999999888 99999998865543

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.66  E-value=2.3e-08  Score=81.78  Aligned_cols=148  Identities=12%  Similarity=0.184  Sum_probs=110.3

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec--CCcEEEEEEecccCCcCHHHH--HHHHHHHhcc-CCCcccccccceeeecccC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK--NGTFIAIRCLKMKKSHSTRNF--MHHIELISKL-RHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~--~~~~vaiK~~~~~~~~~~~~~--~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~   96 (205)
                      ...+|.....||.+.|+.|+....+  ++..+++|-+.........+.  ..|+.+...+ .|.+++.....+.+     
T Consensus       263 ~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~-----  337 (524)
T KOG0601|consen  263 KLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQ-----  337 (524)
T ss_pred             ecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccc-----
Confidence            3456888999999999999988743  577888888765533333222  2344444444 47777766555544     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC-CceeEcC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN-LVAKISS  175 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~-~~~~l~D  175 (205)
                        ....++-.||+.++++...+...  ..+++...+.+..|++.++.++|+   +.++|+|++|+||++.++ +..++.|
T Consensus       338 --~r~~~ip~e~~~~~s~~l~~~~~--~~~d~~~~~~~~~q~~~~l~~i~s---~~~~~~d~~psni~i~~~~~~~~~~~  410 (524)
T KOG0601|consen  338 --LRQGYIPLEFCEGGSSSLRSVTS--QMLDEDPRLRLTAQILTALNVIHS---KLFVHLDVKPSNILISNDGFFSKLGD  410 (524)
T ss_pred             --cccccCchhhhcCcchhhhhHHH--HhcCcchhhhhHHHHHhccccccc---hhhhcccccccceeeccchhhhhccc
Confidence              34566888999888877665322  357778889999999999999999   899999999999999986 8889999


Q ss_pred             CCchhh
Q 028725          176 YNLPLL  181 (205)
Q Consensus       176 fg~a~~  181 (205)
                      |++...
T Consensus       411 ~~~~t~  416 (524)
T KOG0601|consen  411 FGCWTR  416 (524)
T ss_pred             cccccc
Confidence            998853

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=98.66  E-value=2.5e-07  Score=65.38  Aligned_cols=135  Identities=14%  Similarity=0.188  Sum_probs=91.1

Q ss_pred             CCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccc-cccceeeecccCCCCCeEEE
Q 028725           26 FDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVS-ALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~l  104 (205)
                      -+..+.|++|.+|.||+|.+. |..+++|+-..  .+....+..|+++|..+.-.++.+ ++..           +..++
T Consensus        24 ~~v~~~L~KG~~s~Vyl~~~~-~~~~a~Kvrr~--ds~r~~l~kEakiLeil~g~~~~p~vy~y-----------g~~~i   89 (201)
T COG2112          24 LRVEKELAKGTTSVVYLGEWR-GGEVALKVRRR--DSPRRNLEKEAKILEILAGEGVTPEVYFY-----------GEDFI   89 (201)
T ss_pred             hhhhhhhhcccccEEEEeecc-CceEEEEEecC--CcchhhHHHHHHHHHHhhhcCCCceEEEe-----------chhhh
Confidence            356678999999999999997 66888887753  345566788999888887666554 2222           13445


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCc-cccEEeCCCCceeEcCCCchhhcc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLK-ITDILLDQNLVAKISSYNLPLLAE  183 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlk-p~nilv~~~~~~~l~Dfg~a~~~~  183 (205)
                      .|||+.|.+|.+.-...     +...+    ..+++.-.-|-.   .||-|+.|+ |...++-++..+.|+||.-|+...
T Consensus        90 ~me~i~G~~L~~~~~~~-----~rk~l----~~vlE~a~~LD~---~GI~H~El~~~~k~vlv~~~~~~iIDFd~At~k~  157 (201)
T COG2112          90 RMEYIDGRPLGKLEIGG-----DRKHL----LRVLEKAYKLDR---LGIEHGELSRPWKNVLVNDRDVYIIDFDSATFKK  157 (201)
T ss_pred             hhhhhcCcchhhhhhcc-----cHHHH----HHHHHHHHHHHH---hccchhhhcCCceeEEecCCcEEEEEccchhhcc
Confidence            69999998888765431     22222    233444333444   688888875 555566666699999999998655


Q ss_pred             ccc
Q 028725          184 NAE  186 (205)
Q Consensus       184 ~~~  186 (205)
                      .+.
T Consensus       158 ~p~  160 (201)
T COG2112         158 KPR  160 (201)
T ss_pred             CCc
Confidence            543

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.65  E-value=6.4e-07  Score=66.79  Aligned_cols=148  Identities=13%  Similarity=0.140  Sum_probs=83.3

Q ss_pred             ceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCc--ccccccceeeecccCCCCCeEEEEE
Q 028725           29 SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH--LVSALGHCFECYFDDSSVSRIFLIF  106 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~--i~~~~~~~~~~~~~~~~~~~~~lv~  106 (205)
                      ++.++.|..+.||.....+ ..+++|.....  .....+.+|..++..+...+  +++++......    ......+.+|
T Consensus         2 i~~l~~G~~n~~~~v~~~~-~~~vlK~~~~~--~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~----~~~~~~~~~~   74 (239)
T PF01636_consen    2 IRPLSGGFSNRVYRVTTDD-GRYVLKFYRPP--DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSD----EFNGFPYLLM   74 (239)
T ss_dssp             EEEEEESSSSEEEEEEETT-SEEEEEEESSH--HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEET----EETSEEEEEE
T ss_pred             CccCCCCCeeeEEEEEECC-cEEEEEEeCCC--CCHHHHHHHHHHHHHHHhcCCCCceEEeecccc----cccccceEEE
Confidence            4678899999999999875 68999987533  34556777888887775433  34444422221    1134578999


Q ss_pred             eecCCCcHHH----------------hhc---cC--CCCCCCHHH---------HHHH------------HHHHHH-HHH
Q 028725          107 EYVPNGTLRS----------------WIS---GH--AWQSLTWTQ---------RISA------------AIGVAR-GIQ  143 (205)
Q Consensus       107 e~~~~~~L~~----------------~~~---~~--~~~~~~~~~---------~~~i------------~~~i~~-~l~  143 (205)
                      +++++.++..                .+.   ..  .........         ....            ...+.. .+.
T Consensus        75 ~~i~g~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (239)
T PF01636_consen   75 EYIPGRPLDDELSPEQRPELLRQLGRALAQLHQVPPPFSPFADWPEWRLEFLRQLESWTARLRASELFDDLEELEERLLQ  154 (239)
T ss_dssp             EEESSEEHHHTSTHHHHHHHHHHHHHHHHHHHHSHTTCCCHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             EEeccccccccccccccccccccchhhhhhcccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHHH
Confidence            9999987777                111   00  000111100         0000            011111 222


Q ss_pred             Hhhc----CCCCceeecCCccccEEeC-CCCceeEcCCCchhhcc
Q 028725          144 FLHT----GIVPGVFSNNLKITDILLD-QNLVAKISSYNLPLLAE  183 (205)
Q Consensus       144 ~lh~----~~~~~i~h~dlkp~nilv~-~~~~~~l~Dfg~a~~~~  183 (205)
                      .++.    .....++|+|+.|.||+++ +++.+.|+||+.+....
T Consensus       155 ~~~~~~~~~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~~~~  199 (239)
T PF01636_consen  155 ELEALLPKPLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAGWGD  199 (239)
T ss_dssp             HHHHHHHCCSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-EEEE
T ss_pred             HHHhhhccCCCcEEEEeccccccceeeeccceeEEEecccceECC
Confidence            2221    1225799999999999999 66777899999886543

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=98.47  E-value=3.4e-06  Score=63.74  Aligned_cols=141  Identities=13%  Similarity=0.077  Sum_probs=80.0

Q ss_pred             eccCcc-eEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccC-CCcccccccceeeecccCCCCCeEEEEEeec
Q 028725           32 MGEGSK-GQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVSRIFLIFEYV  109 (205)
Q Consensus        32 lg~g~~-g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~  109 (205)
                      |..|.. +.||+.... +..+++|......   .....+|+++++.+. +--+++++.....       .+..+++|+++
T Consensus         6 ~~~g~~~~~v~~~~~~-~~~~~vk~~~~~~---~~~~~~E~~~l~~l~~~~~vP~v~~~~~~-------~~~~~lv~e~i   74 (244)
T cd05150           6 VTEGQSGATVYRLDGK-NPGLYLKIAPSGP---TYELEREAERLRWLAGKLPVPEVIDYGSD-------DGRAWLLTSAV   74 (244)
T ss_pred             cCCCCCcCeEEEEcCC-CCcEEEEecCCCc---ccchHHHHHHHHHHHhcCCCCeEEEEEec-------CCccEEEEEee
Confidence            444444 788988754 4678888875432   334667888887774 3223344443322       24578999999


Q ss_pred             CCCcHHHhhc-------------------cCC--CCCCCHH--HHHHHHH--------------------HHHHHHHHhh
Q 028725          110 PNGTLRSWIS-------------------GHA--WQSLTWT--QRISAAI--------------------GVARGIQFLH  146 (205)
Q Consensus       110 ~~~~L~~~~~-------------------~~~--~~~~~~~--~~~~i~~--------------------~i~~~l~~lh  146 (205)
                      +|.++.....                   .-.  ...+...  .......                    .....+..|-
T Consensus        75 ~G~~l~~~~~~~~~~~~~~~l~~~l~~lH~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  154 (244)
T cd05150          75 PGVPAAALWEELEPERLVDALAEALRRLHALPVADCPFDRRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAELE  154 (244)
T ss_pred             CCccHhHhhcccCHHHHHHHHHHHHHHHhcCCcccCCcchhHHHHHHHHHHHHhcCCcChhhCcHhhcCCCHHHHHHHHH
Confidence            9877764320                   000  0011100  0000000                    0111122221


Q ss_pred             c----CCCCceeecCCccccEEeCCCCceeEcCCCchhhcc
Q 028725          147 T----GIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  183 (205)
Q Consensus       147 ~----~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~  183 (205)
                      .    .....++|+|+.|.||+++++..+.|+||+.+...+
T Consensus       155 ~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~~gd  195 (244)
T cd05150         155 ATRPAEEDLVVTHGDACLPNIIVDPGKFSGFIDLGRLGVAD  195 (244)
T ss_pred             hhCCCcCceEEECCCCCCccEEEeCCcEEEEEEcccccccc
Confidence            1    112458999999999999998778999999886555

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.39  E-value=4.8e-06  Score=66.50  Aligned_cols=167  Identities=10%  Similarity=0.085  Sum_probs=113.2

Q ss_pred             CcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCCCCe-EEE
Q 028725           27 DTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSR-IFL  104 (205)
Q Consensus        27 ~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~~~~-~~l  104 (205)
                      ..++.||+|+-+.+|..... + ..+.|++.........+...|   |... .||-+..-+ .+..+...+..... +.+
T Consensus        14 ~~gr~LgqGgea~ly~l~e~-~-d~VAKIYh~Pppa~~aqk~a~---la~~p~~p~~~~rv-aWPqa~L~G~~~~~~iGf   87 (637)
T COG4248          14 PPGRPLGQGGEADLYTLGEV-R-DQVAKIYHAPPPAAQAQKVAE---LAATPDAPLLNYRV-AWPQATLHGGRRGKVIGF   87 (637)
T ss_pred             CCCccccCCccceeeecchh-h-chhheeecCCCchHHHHHHHH---hccCCCCcchhhhh-cccHHHhhCCCccceeEE
Confidence            35678999999999976532 1 135577765443333332222   3332 455443312 22222333333333 778


Q ss_pred             EEeecCCC-cHHHhhc----cCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          105 IFEYVPNG-TLRSWIS----GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       105 v~e~~~~~-~L~~~~~----~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +|..+++. .+..++.    ++.-....|...+..++.++.+..-||.   .|..-+|+.++|++|++++.+.|.|-+.-
T Consensus        88 lmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~---~Gh~vGDVn~~~~lVsd~~~V~LVdsDsf  164 (637)
T COG4248          88 LMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHE---HGHVVGDVNQNSFLVSDDSKVVLVDSDSF  164 (637)
T ss_pred             ecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHh---cCCcccccCccceeeecCceEEEEcccce
Confidence            88888764 3444443    1122357899999999999999999999   79999999999999999999999998877


Q ss_pred             hhcccccccccccccccccCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      .+..++.......|..+|.+||.
T Consensus       165 qi~~ng~~~~cpVg~~eftPPEl  187 (637)
T COG4248         165 QINANGTLHLCPVGVSEFTPPEL  187 (637)
T ss_pred             eeccCCceEecccCccccCCHHH
Confidence            66666666666789999999994

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=98.35  E-value=2.2e-06  Score=62.12  Aligned_cols=105  Identities=17%  Similarity=0.240  Sum_probs=80.3

Q ss_pred             HHHHHHhccCC-CcccccccceeeecccCCCCCeEEEEEeecCCCcHHHhhc-cCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 028725           69 HHIELISKLRH-CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS-GHAWQSLTWTQRISAAIGVARGIQFLH  146 (205)
Q Consensus        69 ~e~~~l~~l~~-~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~~~i~~~i~~~l~~lh  146 (205)
                      .|..+++.+++ +++++++|.|-           .+.+.|+...+++..... -......+|..+..++.++++.+.+++
T Consensus         8 ~E~lll~~l~~~~~~pk~lG~CG-----------~~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~   76 (188)
T PF12260_consen    8 NEPLLLQLLQGSEPFPKLLGSCG-----------RFYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELD   76 (188)
T ss_pred             cHHHHHHHcCCCCCCCCeeeECC-----------CEEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHHHh
Confidence            47777888865 69999999983           356889997665532100 011124678999999999999999999


Q ss_pred             cCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          147 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       147 ~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      .+....+.-.|++++|+.+++++.++++|.+.+...+.
T Consensus        77 ~~~~~~~~lcDv~~~nfgv~~~~~lk~iDld~v~~~~~  114 (188)
T PF12260_consen   77 HGPLGFFYLCDVSPDNFGVNDDGRLKLIDLDDVFVEDK  114 (188)
T ss_pred             cCCCCcEEEeecchHHeEEeCCCcEEEEechhcchhHH
Confidence            86655677899999999999999999999998865543

Proteins in this uncharacterised family are described as transmembrane proteins.

>PLN02876 acyl-CoA dehydrogenase

Probab=98.27  E-value=2.1e-05  Score=69.45  Aligned_cols=152  Identities=17%  Similarity=0.257  Sum_probs=90.4

Q ss_pred             ceeeccCcceEEEEEEecCC---cEEEEEEecccC-CcCHHHHHHHHHHHhccC-CCcc--cccccceeeecccCCCCCe
Q 028725           29 SAFMGEGSKGQMYRGRLKNG---TFIAIRCLKMKK-SHSTRNFMHHIELISKLR-HCHL--VSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~~~---~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~-~~~i--~~~~~~~~~~~~~~~~~~~  101 (205)
                      .+.++.|.+..+|.....++   ..+++|+..... ......+.+|.++++.+. |+++  ++++..|.+.    ...+.
T Consensus        43 v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~----~v~G~  118 (822)
T PLN02876         43 VSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDA----SVIGT  118 (822)
T ss_pred             EEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCC----CcCCC
Confidence            56788899999999876543   467777764332 223456789999999985 6665  5555555431    11245


Q ss_pred             EEEEEeecCCCcHHH--------------------hhc---cCC---------CCC--CCHHHHHHHHH-----------
Q 028725          102 IFLIFEYVPNGTLRS--------------------WIS---GHA---------WQS--LTWTQRISAAI-----------  136 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~--------------------~~~---~~~---------~~~--~~~~~~~~i~~-----------  136 (205)
                      .|+|||+++|..+.+                    .+.   .-.         +.+  .....+..+..           
T Consensus       119 ~flVME~v~G~~~~~~~~~~~~~~~r~~l~~~l~~~La~LH~vd~~~~gl~~~g~~~~~~~~~l~~w~~~~~~~~~~~~~  198 (822)
T PLN02876        119 AFYIMEYLEGRIFVDPKLPGVAPERRRAIYRATAKVLAALHSADVDAIGLGKYGRRDNYCKRQVERWAKQYLASTGEGKP  198 (822)
T ss_pred             ceEEEEecCCcccCCccCCCCCHHHHHHHHHHHHHHHHHHhCCCchhcChhhcCCCCchHHHHHHHHHHHHHHhhcccCC
Confidence            789999998754321                    010   000         000  00111211111           


Q ss_pred             ----HHHHHHHHhhcCCC--------CceeecCCccccEEeCCC-C-ceeEcCCCchhhccc
Q 028725          137 ----GVARGIQFLHTGIV--------PGVFSNNLKITDILLDQN-L-VAKISSYNLPLLAEN  184 (205)
Q Consensus       137 ----~i~~~l~~lh~~~~--------~~i~h~dlkp~nilv~~~-~-~~~l~Dfg~a~~~~~  184 (205)
                          .+...+.+|..+..        ..++|+|+++.|++++.+ . .+-|+||+++...+.
T Consensus       199 ~~~~~~~~l~~wL~~~~P~~~~~~~~~~LvHGD~~~~Nvl~~~~~~~v~aVLDWE~a~~GdP  260 (822)
T PLN02876        199 PRNPKMLELIDWLRENIPAEDSTGAGTGIVHGDFRIDNLVFHPTEDRVIGILDWELSTLGNQ  260 (822)
T ss_pred             CCChhHHHHHHHHHhcCCCccccCCCcceEecCcccccEEEcCCCCeEEEEEeeeccccCCh
Confidence                12233566644332        349999999999999853 3 358999999865554

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=98.22  E-value=2.5e-05  Score=58.58  Aligned_cols=144  Identities=13%  Similarity=0.097  Sum_probs=81.6

Q ss_pred             ceeeccCcceEEEEEEecC--CcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccc-cccceeeecccCCCCCeEEEE
Q 028725           29 SAFMGEGSKGQMYRGRLKN--GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVS-ALGHCFECYFDDSSVSRIFLI  105 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~lv  105 (205)
                      .+.|..|-...+|+....+  ++.+++|+..... .......+|..+++.+...++.+ ++..+         .  -.++
T Consensus         3 i~~l~gG~tN~~~~v~~~~~~~~~~vlR~~~~~~-~~~~d~~~E~~~~~~l~~~gl~P~v~~~~---------~--~~~l   70 (235)
T cd05157           3 FKRFTGGITNKLVKVSNKEDNQDAVLVRVYGNKT-ELIIDRERELRIHKLLSKHGLAPKLYATF---------Q--NGLI   70 (235)
T ss_pred             EEEcCCcccceEEEEEcCCCCCCeEEEEEccCCc-cceecHHHHHHHHHHHHhCCCCCeEEEEe---------C--CcEE
Confidence            3567778888999988653  5789999775432 22233456888888886544433 32211         1  1379


Q ss_pred             EeecCCCcHHHh--------------hc----cCCCC--------CC-CHHHHHHHHH----------------------
Q 028725          106 FEYVPNGTLRSW--------------IS----GHAWQ--------SL-TWTQRISAAI----------------------  136 (205)
Q Consensus       106 ~e~~~~~~L~~~--------------~~----~~~~~--------~~-~~~~~~~i~~----------------------  136 (205)
                      +||++|.++...              +.    .....        .. .+..+..+..                      
T Consensus        71 ~e~i~G~~l~~~~~~~~~~~~~la~~l~~lH~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (235)
T cd05157          71 YEFIPGRTLEPEDLRNPKIYRLIARELAKLHSIKPPEAISSPGTPKPILWPTIRKWINLVPTEFKKPEKFQKKTKAISFE  150 (235)
T ss_pred             EEeeCCCcCCHHHccChHHHHHHHHHHHHHhcccccccccccCCCCCcHHHHHHHHHHHhHHhhccccchhhhhccccHH
Confidence            999988665321              00    00000        11 1112111111                      


Q ss_pred             HHH---HHHH-HhhcC-CCCceeecCCccccEEeCC-CCceeEcCCCchhhccc
Q 028725          137 GVA---RGIQ-FLHTG-IVPGVFSNNLKITDILLDQ-NLVAKISSYNLPLLAEN  184 (205)
Q Consensus       137 ~i~---~~l~-~lh~~-~~~~i~h~dlkp~nilv~~-~~~~~l~Dfg~a~~~~~  184 (205)
                      .+.   ..+. .+... ....++|+|+.+.||++++ ++.+.++||..|.....
T Consensus       151 ~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~~~~~  204 (235)
T cd05157         151 QLRDEISWLKELLSALNSPIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAGYNYR  204 (235)
T ss_pred             HHHHHHHHHHHHhcccCCCEEEEcCCCCcCcEEEeCCCCCEEEEEcccCCcCch
Confidence            111   1111 11111 1246899999999999997 57899999998865543

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=98.21  E-value=1.9e-05  Score=61.40  Aligned_cols=159  Identities=12%  Similarity=0.193  Sum_probs=86.0

Q ss_pred             HHHHHhcCCCc-----ceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCc--cccccccee
Q 028725           18 ELEEATNNFDT-----SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH--LVSALGHCF   90 (205)
Q Consensus        18 ~~~~~~~~y~~-----~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~--i~~~~~~~~   90 (205)
                      ++....++|.+     .+.+..|....+|+.... +..+++|+...   ........|..++..+...+  +++++...-
T Consensus         3 ~l~~~l~~y~~~~~~~i~~i~~G~~n~~y~v~~~-~~~~vLr~~~~---~~~~~~~~e~~~l~~L~~~g~~vp~~i~~~~   78 (296)
T cd05153           3 ELASFLADYDLGELLSFEGISAGIENTNYFVTTD-SGRYVLTLFEK---VSAEELPFFLALLDHLAERGLPVPRPIADRD   78 (296)
T ss_pred             HHHHHHHHcCCCchhheecccCccccceEEEEeC-CCcEEEEEcCC---CChHhccHHHHHHHHHHHCCCCCCccccCCC
Confidence            34444455553     445667777899988754 45788898763   23445566777776664333  333332111


Q ss_pred             eecccCCCCCeEEEEEeecCCCcHHH-----h------hc------cC-CC-----CCCCHHHHH----------HHHHH
Q 028725           91 ECYFDDSSVSRIFLIFEYVPNGTLRS-----W------IS------GH-AW-----QSLTWTQRI----------SAAIG  137 (205)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~-----~------~~------~~-~~-----~~~~~~~~~----------~i~~~  137 (205)
                      .... ....+..++++++++|.++..     .      +.      .. ..     ....+....          .....
T Consensus        79 g~~~-~~~~~~~~~l~~~i~G~~~~~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (296)
T cd05153          79 GEYL-SELAGKPAALVEFLAGEHLTRPTAAHCRQIGEALARLHLAAQSFPGERNNLRGLAWIRELGKDLLPLLSAEDRAL  157 (296)
T ss_pred             CcEe-eeeCCceEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHhccCCccCCCcCCcHHHHHHHHHhccccCHHHHHH
Confidence            0000 011345789999998865432     0      00      00 00     001111100          00111


Q ss_pred             HHHHHHHhhc----CCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          138 VARGIQFLHT----GIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       138 i~~~l~~lh~----~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      +..++.++.+    ....+++|+|+.|.|+++++++.+.|+||+.+..
T Consensus       158 ~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~~  205 (296)
T cd05153         158 LADELARQDAFDPSDLPRGVIHADLFRDNVLFDGDELSGVIDFYFACT  205 (296)
T ss_pred             HHHHHHHHHhhhhhcCCCcCCccCcCcccEEEeCCceEEEeehhhhcC
Confidence            2223333332    2235799999999999999987789999998754

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=98.18  E-value=3.3e-05  Score=58.09  Aligned_cols=34  Identities=12%  Similarity=0.271  Sum_probs=28.4

Q ss_pred             CceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          151 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       151 ~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ..++|+|+.+.|++++.....-|+||+.+...+.
T Consensus       164 ~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~~gDp  197 (235)
T cd05155         164 PVWFHGDLAPGNLLVQDGRLSAVIDFGCLGVGDP  197 (235)
T ss_pred             ceEEeCCCCCCcEEEECCCEEEEEeCcccCcCCh
Confidence            4589999999999998776678999998865543

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=98.17  E-value=5.7e-05  Score=55.03  Aligned_cols=148  Identities=19%  Similarity=0.372  Sum_probs=94.9

Q ss_pred             CCCCCCCcccccCHHHHHHHhcCCCcceeeccCcc-eEEEEEEecCCcEEEEEEecc---cCC-----------------
Q 028725            3 LGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSK-GQMYRGRLKNGTFIAIRCLKM---KKS-----------------   61 (205)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~lg~g~~-g~V~~~~~~~~~~vaiK~~~~---~~~-----------------   61 (205)
                      |++..-|....|+.     ...+++.++.||.|.- |.||++... |+.+|+|++..   ...                 
T Consensus        21 lp~~~gPKL~~F~~-----h~~~I~flefLg~g~~~~~V~kv~I~-g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~   94 (207)
T PF13095_consen   21 LPQCPGPKLEPFTH-----HGDDIEFLEFLGHGSHDGYVFKVEID-GRIYALKLFRFWDYTEPDYTRERFAGHETSLSTP   94 (207)
T ss_pred             cccCCCCCcCCcCC-----CCCcEeeeeecCCCCceeEEEEEEEC-CeEEEEEEeeccccCCCccccccccccccccchh
Confidence            44445555555655     2378999999999999 999999985 88999999422   110                 


Q ss_pred             -cCHHHHHHHHHHHhccC---CCcc--cccccceeeec---c--------cCCCCCeEEEEEeecCCCcHHHhhccCCCC
Q 028725           62 -HSTRNFMHHIELISKLR---HCHL--VSALGHCFECY---F--------DDSSVSRIFLIFEYVPNGTLRSWISGHAWQ  124 (205)
Q Consensus        62 -~~~~~~~~e~~~l~~l~---~~~i--~~~~~~~~~~~---~--------~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~  124 (205)
                       .....|..|-+...+++   +.++  +++.|+..-..   .        .+.....-.||.|+++...           
T Consensus        95 ~~y~~PF~~ECRAfgRLke~~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~-----------  163 (207)
T PF13095_consen   95 AHYADPFNCECRAFGRLKEAGREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP-----------  163 (207)
T ss_pred             hhhcChHHHHHHhhHHHHhccccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc-----------
Confidence             12235677887777775   3444  67777554321   0        0011222345666654422           


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          125 SLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       125 ~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      .++    ..-+.+|.+-|..+|.   .||+-+|+++.|..     .-+|+|||.+
T Consensus       164 ~~~----~~~~~~~~~dl~~~~k---~gI~~~Dv~~~ny~-----~G~lvDfs~~  206 (207)
T PF13095_consen  164 PLQ----IRDIPQMLRDLKILHK---LGIVPRDVKPRNYR-----GGKLVDFSSS  206 (207)
T ss_pred             ccc----hhHHHHHHHHHHHHHH---CCeeeccCcccccc-----CCEEEecccC
Confidence            112    2234667777889999   79999999999985     3457888864

>PRK05231 homoserine kinase; Provisional

Probab=98.12  E-value=0.00016  Score=56.84  Aligned_cols=164  Identities=13%  Similarity=0.197  Sum_probs=83.4

Q ss_pred             cccCHHHHHHHhcCCCc-----ceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCc--ccc
Q 028725           12 RTFSLEELEEATNNFDT-----SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH--LVS   84 (205)
Q Consensus        12 ~~~~~~~~~~~~~~y~~-----~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~--i~~   84 (205)
                      -..+.+++......|.+     .+.++.|....+|.....+| .+++|++. .  ........+...+..+...+  +++
T Consensus         5 t~ls~~~l~~~l~~y~~~~~~~~~~l~~G~~n~~y~v~t~~g-~~vLK~~~-~--~~~~~l~~~~~~l~~L~~~glpvP~   80 (319)
T PRK05231          5 TDVSDDELAAFLAPYDLGELLSLKGIAEGIENSNFFLTTTQG-EYVLTLFE-R--LTAEDLPFFLGLMQHLAARGVPVPA   80 (319)
T ss_pred             ccCCHHHHHHHHHhcCCchhhccchhccccccceEEEEeCCC-cEEEEEec-c--CChHHhHHHHHHHHHHHHCCCCCCc
Confidence            34566677666677765     23455677778998875544 68889875 2  12233333444444442212  222


Q ss_pred             cccceeeecccCCCCCeEEEEEeecCCCcHH-----------Hhhc-----cCC----C-C--CC-CHHHHHH-------
Q 028725           85 ALGHCFECYFDDSSVSRIFLIFEYVPNGTLR-----------SWIS-----GHA----W-Q--SL-TWTQRIS-------  133 (205)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~-----------~~~~-----~~~----~-~--~~-~~~~~~~-------  133 (205)
                      .+... +...-....+..++++++++|..+.           ..+.     ...    . .  .+ .+.....       
T Consensus        81 ~i~~~-~G~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~G~~LA~lH~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  159 (319)
T PRK05231         81 PVARR-DGAALGELAGKPAAIVTFLEGKWPRAPTAAHCAEVGEMLARMHLAGRDFPLERPNLRGLAWWRELAPRLLPFLA  159 (319)
T ss_pred             ceeCC-CCCEeeeeCCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCccCCCCCChHHHHHHHHHHhhccC
Confidence            22110 0000001145678999999886431           1111     000    0 0  01 1111110       


Q ss_pred             -----HHHH-HHHHHHHhhc----CCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          134 -----AAIG-VARGIQFLHT----GIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       134 -----i~~~-i~~~l~~lh~----~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                           ...+ +...+..+..    ....+++|+|+.|.||+++.+....|+||+.+.
T Consensus       160 ~~~~~~l~~~~~~~~~~~~~~~~~~lp~~liHgD~~~~Nil~~~~~~~~iIDf~~~~  216 (319)
T PRK05231        160 DEQAALLEAELAAQLAFLASAAWPALPRGVIHADLFRDNVLFEGDRLSGFIDFYFAC  216 (319)
T ss_pred             hhHHHHHHHHHHHHHHhhhccccccCCcccCCCCCCCCcEEEECCceEEEEeccccc
Confidence                 0111 1111222221    133589999999999999976666899999884

>TIGR02721 ycfN_thiK thiamine kinase

Probab=98.11  E-value=2.7e-05  Score=59.29  Aligned_cols=140  Identities=8%  Similarity=0.054  Sum_probs=77.8

Q ss_pred             eccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCccc-ccccceeeecccCCCCCeEEEEEeecC
Q 028725           32 MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV-SALGHCFECYFDDSSVSRIFLIFEYVP  110 (205)
Q Consensus        32 lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~-~~~~~~~~~~~~~~~~~~~~lv~e~~~  110 (205)
                      +..|-...+|+... +++.+++|...........+..+|..+++.+...++. +++...           .-++|+|+++
T Consensus         4 ~~~G~tn~~y~~~~-~~~~~vlR~~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~i~~~-----------~~~~v~e~i~   71 (256)
T TIGR02721         4 LSGGLTNRSWRIEH-PGISFVWRPQSPVCKALGVDRQREYQILQALSALGLAPKPILVN-----------EHWLLVEWLE   71 (256)
T ss_pred             CCCcCcCCeEEEEe-CCccEEEeeCCcccccccCcHHHHHHHHHHHHhcCCCCceEEEe-----------CCEEEEEecc
Confidence            45677788998873 4678888876543222212457788888888654443 222221           1268999998


Q ss_pred             CCcHHHh--------------hc---cC--CCCCCCHH-HHHHHHHHH---------HHHHHHhhc-----CCCCceeec
Q 028725          111 NGTLRSW--------------IS---GH--AWQSLTWT-QRISAAIGV---------ARGIQFLHT-----GIVPGVFSN  156 (205)
Q Consensus       111 ~~~L~~~--------------~~---~~--~~~~~~~~-~~~~i~~~i---------~~~l~~lh~-----~~~~~i~h~  156 (205)
                      |.++...              +.   ..  ...+++.. .+..+..++         ...+..+-.     .....++|+
T Consensus        72 G~~~~~~~~~~~~~~~~la~~l~~lH~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~H~  151 (256)
T TIGR02721        72 GEVITLDQFVALDLLLELAALLHQLHSQPRFGYPLSLKARIAHYWLQIDPARRTPEWLRLYKQFRSAPEPAPLPLAPLHM  151 (256)
T ss_pred             CcccccccccCchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhcccccCChHHHHHHHHHHhccCCCCCCCeeecC
Confidence            8655321              11   00  11111111 111111111         111111111     112358999


Q ss_pred             CCccccEEeCCCCceeEcCCCchhhccc
Q 028725          157 NLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       157 dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      |+.|.||++++++ +.|+||+.|...+.
T Consensus       152 Dl~~~Nil~~~~~-~~lIDwE~a~~gdp  178 (256)
T TIGR02721       152 DVHAYNLVVTPQG-LKLIDWEYASDGDI  178 (256)
T ss_pred             CCCcCcEEEeCCC-CEEEeccccCcCCH
Confidence            9999999999876 78999998865543

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=98.09  E-value=0.00014  Score=53.16  Aligned_cols=135  Identities=14%  Similarity=0.196  Sum_probs=86.4

Q ss_pred             cceeeccCcceEEEEEEecCCcEEEEEEecccC----------------CcCHHHHHHHHHHHhccC------CCccccc
Q 028725           28 TSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK----------------SHSTRNFMHHIELISKLR------HCHLVSA   85 (205)
Q Consensus        28 ~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~----------------~~~~~~~~~e~~~l~~l~------~~~i~~~   85 (205)
                      ....||+|+.-.||.-.  +.....||+.....                .....+..+|+.....+.      +..|.++
T Consensus         5 ~~~~i~~G~~R~cy~HP--~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~   82 (199)
T PF10707_consen    5 ESDLIAQGGERDCYQHP--DDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRF   82 (199)
T ss_pred             CCcccccCCCceEEECC--CCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccE
Confidence            34678999998777543  34457788886544                122455566666555554      7888899


Q ss_pred             ccceeeecccCCCCCeEEEEEeecCC------CcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCc
Q 028725           86 LGHCFECYFDDSSVSRIFLIFEYVPN------GTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLK  159 (205)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~lv~e~~~~------~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlk  159 (205)
                      +|...+       +..+.+|+|.+.+      .||.+++...   .++. .....+   -+-..||-+   ..|+.+|++
T Consensus        83 ~G~veT-------~~G~Glv~e~I~d~dG~~s~TL~~~l~~~---~~~~-~~~~~L---~~f~~~l~~---~~Iv~~dl~  145 (199)
T PF10707_consen   83 YGFVET-------NLGLGLVVELIRDADGNISPTLEDYLKEG---GLTE-ELRQAL---DEFKRYLLD---HHIVIRDLN  145 (199)
T ss_pred             eEEEec-------CCceEEEEEEEECCCCCcCccHHHHHHcC---CccH-HHHHHH---HHHHHHHHH---cCCeecCCC
Confidence            998865       5567888887632      3788888553   3444 233232   333456667   589999999


Q ss_pred             cccEEeCCC--C--ceeEcC-CCchhh
Q 028725          160 ITDILLDQN--L--VAKISS-YNLPLL  181 (205)
Q Consensus       160 p~nilv~~~--~--~~~l~D-fg~a~~  181 (205)
                      |.||++...  +  .+.|+| ||....
T Consensus       146 ~~NIv~~~~~~~~~~lvlIDG~G~~~~  172 (199)
T PF10707_consen  146 PHNIVVQRRDSGEFRLVLIDGLGEKEL  172 (199)
T ss_pred             cccEEEEecCCCceEEEEEeCCCCccc
Confidence            999999732  2  344544 565443

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=98.09  E-value=0.00023  Score=55.76  Aligned_cols=164  Identities=12%  Similarity=0.187  Sum_probs=87.8

Q ss_pred             ccCHHHHHHHhcCCCcc-----eeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCc--cccc
Q 028725           13 TFSLEELEEATNNFDTS-----AFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH--LVSA   85 (205)
Q Consensus        13 ~~~~~~~~~~~~~y~~~-----~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~--i~~~   85 (205)
                      ..+.+++......|.+.     +.++.|....+|.....+| .+++|+.....  .......|..++..+...+  ++++
T Consensus         6 ~~~~~~l~~~l~~y~~~~~~~i~~~~~G~~n~~y~v~t~~~-~~vLK~~~~~~--~~~~i~~e~~~l~~L~~~g~pvp~~   82 (307)
T TIGR00938         6 SVSDEEMSSFLDGYDLGELLSLKGIAEGVENSNYLLTTDVG-RYILTLYEKRV--KAEELPFFLALTTHLAARGLPVPKP   82 (307)
T ss_pred             cCCHHHHHHHHHhcCCCCceeccccCCccccceEEEEeCCC-cEEEEEecCCC--CHHHHHHHHHHHHHHHHCCCCCCcc
Confidence            44556676666677553     4466676688998875434 67788775321  2333445566666554322  3333


Q ss_pred             ccceeeecccCCCCCeEEEEEeecCCCcHH-----Hh------hc---c-CCC-----CC----CCHHHHH---------
Q 028725           86 LGHCFECYFDDSSVSRIFLIFEYVPNGTLR-----SW------IS---G-HAW-----QS----LTWTQRI---------  132 (205)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~-----~~------~~---~-~~~-----~~----~~~~~~~---------  132 (205)
                      +........ ....+..++++++++|..+.     +.      +.   . ..+     ..    ..|....         
T Consensus        83 i~t~~g~~~-~~~~g~~~~l~e~i~G~~~~~~~~~~~~~~G~~LA~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  161 (307)
T TIGR00938        83 VKSRDGRQL-STLAGKPACLVEFLQGLSVGRPTAMHCRPVGEVLAWMHLAGAHFPENRKNSLRLEAWHILAEKCFEAAPQ  161 (307)
T ss_pred             ccCCCCCee-hhcCCeEEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCCCChHHHHHHHHhhhhcccc
Confidence            321111000 01145678999999885431     11      10   0 000     00    0111000         


Q ss_pred             ---HHHHHHHHHHHHhhc----CCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          133 ---SAAIGVARGIQFLHT----GIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       133 ---~i~~~i~~~l~~lh~----~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                         .....+...+.++..    ....+++|+|+.+.|+++++++.+.|+||+.+.
T Consensus       162 l~~~~~~~l~~~~~~l~~~~~~~~~~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~  216 (307)
T TIGR00938       162 LEAHMGAELDKELDYLDKFWPRDLPRGVIHADLFPDNVLFDGDSVKGVIDFYFAC  216 (307)
T ss_pred             cCHHHHHHHHHHHHHHHhhhhhcCCCccCCCCCCcCcEEEECCceEEEeeccccc
Confidence               001112223444432    234689999999999999988877999999884

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=98.08  E-value=5.4e-06  Score=64.32  Aligned_cols=145  Identities=12%  Similarity=0.163  Sum_probs=94.8

Q ss_pred             ccccCHHHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCC---------------cC-----HH--HHH
Q 028725           11 YRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS---------------HS-----TR--NFM   68 (205)
Q Consensus        11 ~~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~---------------~~-----~~--~~~   68 (205)
                      +..+-+..+..-..-+.+++.||-|.-+.||.+...+|.+.++|.=.....               ..     ..  ...
T Consensus        79 yDyLAlktL~~R~~v~svGnqIGVGKESDIY~v~d~~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~  158 (465)
T KOG2268|consen   79 YDYLALKTLSNRGSVESVGNQIGVGKESDIYVVADEEGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAAT  158 (465)
T ss_pred             chHHHHHHHHhcchhhhhccccccccccceEEEecCCCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHH
Confidence            333334444444445789999999999999999988899998885322110               00     01  123


Q ss_pred             HHHHHHhccCCC--cccccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 028725           69 HHIELISKLRHC--HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH  146 (205)
Q Consensus        69 ~e~~~l~~l~~~--~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh  146 (205)
                      +|...++.+.-.  -+++.++           .+..++|||.+.+.+|.+.-....     ..++.   ..++.-+.-|-
T Consensus       159 kEfafmkaL~e~gfpVPkpiD-----------~~RH~Vvmelv~g~Pl~~v~~v~d-----~~~ly---~~lm~~Iv~la  219 (465)
T KOG2268|consen  159 KEFAFMKALYERGFPVPKPID-----------HNRHCVVMELVDGYPLRQVRHVED-----PPTLY---DDLMGLIVRLA  219 (465)
T ss_pred             HHHHHHHHHHHcCCCCCCccc-----------ccceeeHHHhhcccceeeeeecCC-----hHHHH---HHHHHHHHHHH
Confidence            466666666432  2233333           346789999999988887554322     23232   23333344455


Q ss_pred             cCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725          147 TGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus       147 ~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      .   .|+||+|..-=||+|+.++.+.++||=
T Consensus       220 ~---~GlIHgDFNEFNimv~dd~~i~vIDFP  247 (465)
T KOG2268|consen  220 N---HGLIHGDFNEFNIMVKDDDKIVVIDFP  247 (465)
T ss_pred             H---cCceecccchheeEEecCCCEEEeech
Confidence            5   699999999999999999999999995

>PRK10593 hypothetical protein; Provisional

Probab=98.03  E-value=0.00026  Score=55.21  Aligned_cols=82  Identities=10%  Similarity=0.005  Sum_probs=55.9

Q ss_pred             CCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCC---CcccccccceeeecccCCCCCeE
Q 028725           26 FDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRH---CHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      -...+.|+.|..+.||.....++ .+++|..+.  ......+..|...++.+.-   -.++++++.+...    ...+..
T Consensus        16 ~~~~~~i~~G~~~~vy~~~~~~~-~~~~k~~~~--~~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~----~~~g~~   88 (297)
T PRK10593         16 LSRVECISEQPYAALWALYDSQG-NPMPLMARS--FSTPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHE----QSPGPD   88 (297)
T ss_pred             hheeeecCCccceeEEEEEcCCC-CEEEEEecc--cccchHHHHHHHHHHHHccCCCCCcCcEEEEeccC----CcCCCe
Confidence            34456799999999999875544 467777542  1234578889998888853   3466777665431    123558


Q ss_pred             EEEEeecCCCcH
Q 028725          103 FLIFEYVPNGTL  114 (205)
Q Consensus       103 ~lv~e~~~~~~L  114 (205)
                      ++|||++++.++
T Consensus        89 ~LVmE~i~G~~~  100 (297)
T PRK10593         89 VLLLERLRGVSV  100 (297)
T ss_pred             EEEEeccCCEec
Confidence            999999988654

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=97.99  E-value=6.3e-05  Score=59.50  Aligned_cols=143  Identities=12%  Similarity=0.155  Sum_probs=94.9

Q ss_pred             CcceeeccCcceEEEEEEecCCcEEEEEEecccC---------------------CcC-HHH----HHHHHHHHhccCCC
Q 028725           27 DTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK---------------------SHS-TRN----FMHHIELISKLRHC   80 (205)
Q Consensus        27 ~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~---------------------~~~-~~~----~~~e~~~l~~l~~~   80 (205)
                      .+-.+|..|.-+.||.+...+|..+|||+++-+-                     ..+ .++    ...|++.|+++...
T Consensus       147 ~inGCiSTGKEANVYHat~~dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkRl~~a  226 (520)
T KOG2270|consen  147 EINGCISTGKEANVYHATEEDGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKRLNNA  226 (520)
T ss_pred             ecccccccCccceeEeeecCCCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            3445788899999999998889999999885420                     001 111    23477788888777


Q ss_pred             cccccccceeeecccCCCCCeEEEEEeecCCC-cHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCc
Q 028725           81 HLVSALGHCFECYFDDSSVSRIFLIFEYVPNG-TLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLK  159 (205)
Q Consensus        81 ~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlk  159 (205)
                      +|+-.-...+.         ...|||+++..- -..-.+..   ..++...+..+-.+++.-|.-|-+.  .+++|.||+
T Consensus       227 GIP~PePIlLk---------~hVLVM~FlGrdgw~aPkLKd---~~ls~~ka~~~Y~~~v~~MR~lY~~--c~LVHADLS  292 (520)
T KOG2270|consen  227 GIPCPEPILLK---------NHVLVMEFLGRDGWAAPKLKD---ASLSTSKARELYQQCVRIMRRLYQK--CRLVHADLS  292 (520)
T ss_pred             CCCCCCceeee---------cceEeeeeccCCCCcCccccc---ccCChHHHHHHHHHHHHHHHHHHHH--hceeccchh
Confidence            76543333332         356899999531 11111222   2455556666667777777766554  689999999


Q ss_pred             cccEEeCCCCceeEcCCCchhhccc
Q 028725          160 ITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       160 p~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      -=|+|+ .+|.++++|.+-+...+.
T Consensus       293 EfN~Ly-hdG~lyiIDVSQSVE~DH  316 (520)
T KOG2270|consen  293 EFNLLY-HDGKLYIIDVSQSVEHDH  316 (520)
T ss_pred             hhhheE-ECCEEEEEEccccccCCC
Confidence            999998 457999999998754443

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=97.86  E-value=0.00018  Score=56.14  Aligned_cols=143  Identities=15%  Similarity=0.132  Sum_probs=81.1

Q ss_pred             eeeccCcceEEEEEEecC-------CcEEEEEEecccCCcCHHHHHHHHHHHhccCCCccc-ccccceeeecccCCCCCe
Q 028725           30 AFMGEGSKGQMYRGRLKN-------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV-SALGHCFECYFDDSSVSR  101 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~~-------~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~-~~~~~~~~~~~~~~~~~~  101 (205)
                      +.+..|-...+|+....+       ++.+++|+..... .......+|..++..+...++. +++..+.           
T Consensus         4 ~~l~gGltN~~y~v~~~~~~~~~~~~~~~vlRi~~~~~-~~~~~r~~E~~~~~~l~~~g~~P~~~~~~~-----------   71 (302)
T cd05156           4 SKISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSV-ELLIDRERELVVFARLSERNLGPKLYGIFP-----------   71 (302)
T ss_pred             EEecCcccceeEEEEcCCcccccCCCCeEEEEEecCCC-cceechHHHHHHHHHHHhCCCCCceEEEeC-----------
Confidence            456667777899888554       5789999976433 2334566788888777544443 3333221           


Q ss_pred             EEEEEeecCCCcHHHh--------------hc---cC--C--CC---CC--CHHHHHH----------------------
Q 028725          102 IFLIFEYVPNGTLRSW--------------IS---GH--A--WQ---SL--TWTQRIS----------------------  133 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~--------------~~---~~--~--~~---~~--~~~~~~~----------------------  133 (205)
                      -..|+++++|.++...              +.   ..  .  ..   ..  -+..+..                      
T Consensus        72 ~~~v~e~i~G~~l~~~~~~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (302)
T cd05156          72 NGRIEEFIPSRTLTTEELRDPDISAEIARRMAKLHSIVVPLSPEERDLTPAIWKLLKQWLDLAETVIEIVDSDSEKLLEV  151 (302)
T ss_pred             CCchhheeCCCcCCHhHcCCcHHHHHHHHHHHHhhCCCCCCCCCcCcccchHHHHHHHHHHHhhhhhhhcccchhhhhhh
Confidence            1247888877655331              00   00  0  00   00  0111100                      


Q ss_pred             ----HHHHHHHHHHHhhc------CCCCceeecCCccccEEeCCC----CceeEcCCCchhhccc
Q 028725          134 ----AAIGVARGIQFLHT------GIVPGVFSNNLKITDILLDQN----LVAKISSYNLPLLAEN  184 (205)
Q Consensus       134 ----i~~~i~~~l~~lh~------~~~~~i~h~dlkp~nilv~~~----~~~~l~Dfg~a~~~~~  184 (205)
                          +...+...+.++-.      +....++|+|+.+.||+++++    +.+.++||+.|.....
T Consensus       152 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~~~p  216 (302)
T cd05156         152 ELSLFLEDEAKYLRFLLESTSEESGSPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASYNYR  216 (302)
T ss_pred             hHHHHHHHHHHHHHHHHhhccCCCCCCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCCCCc
Confidence                01112222333331      233578999999999999974    8899999999865543

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=97.77  E-value=2.8e-06  Score=70.86  Aligned_cols=160  Identities=13%  Similarity=0.080  Sum_probs=107.6

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCc-ccccccceeeecccCCCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH-LVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~~~~~  100 (205)
                      .+..+...+.+++++++.+++.+..-.+....+++...     ....-++++|.+++||| .+..++.+       ....
T Consensus       240 k~kws~~fh~fvK~altknpKkRptaeklL~h~fvs~~-----l~~rl~~eLLdK~n~P~~~v~~~~d~-------~~E~  307 (829)
T KOG0576|consen  240 KTKWSEFFHNFVKGALTKNPKKRPTAEKLLQHPFVSQT-----LSRRLAIELLDKVNNPNPVVRYLEDY-------DGED  307 (829)
T ss_pred             CccchHHHHHHHHHHhcCCCccCCChhhheeceeeccc-----hhhHHHHHHHHHccCCCCcccccccC-------Cccc
Confidence            34455666667888899888887433444445655422     33445788999999999 33333322       3367


Q ss_pred             eEEEEEeecCCC-cHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          101 RIFLIFEYVPNG-TLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       101 ~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ..++.++++.++ +......... ..+.+.....+.+.-.+++.++|+   ..=+|+|    ||+..+ +..+..||+..
T Consensus       308 ~~~i~~~i~s~~rs~~~~~~~se-~~~~~~~~~~~~r~et~~l~~l~~---~~~~~~d----~~l~s~-~~~~~~~~~v~  378 (829)
T KOG0576|consen  308 YLWIPMRICSTGRSSALEMTVSE-IALEQYQFAYPLRKETRPLAELHS---SYKVHRD----NILGSE-EEVKLLDFAVP  378 (829)
T ss_pred             ccchhhhhhcCCccccccCChhh-Hhhhhhhhhhhhhhhccccccccc---ccccCcc----cccccc-cccccccccCC
Confidence            789999999776 3222221111 234445555667777788999998   3446887    665544 68899999999


Q ss_pred             hhcccccccccccccccccCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      ..++.........++..++|||.
T Consensus       379 ~~L~~~~~~~t~~~~~~~~~pev  401 (829)
T KOG0576|consen  379 PQLTRTMKPRTAIGTPEPLAPEV  401 (829)
T ss_pred             cccCcccccccCCCCCCCCCchh
Confidence            88887766777899999999993

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=97.70  E-value=0.0018  Score=52.42  Aligned_cols=75  Identities=8%  Similarity=0.013  Sum_probs=50.5

Q ss_pred             ceeeccCcceEEEEEEecCC-cEEEEEEeccc------C-CcCHHHHHHHHHHHhccC---CCcccccccceeeecccCC
Q 028725           29 SAFMGEGSKGQMYRGRLKNG-TFIAIRCLKMK------K-SHSTRNFMHHIELISKLR---HCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~~~-~~vaiK~~~~~------~-~~~~~~~~~e~~~l~~l~---~~~i~~~~~~~~~~~~~~~   97 (205)
                      .+.||.|.+..||++...+| +.+++|.-...      . +...+....|.+.|..+.   ...+++++.+.        
T Consensus        31 ~~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~D--------  102 (401)
T PRK09550         31 AREIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHYD--------  102 (401)
T ss_pred             eeEcCCCceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEEC--------
Confidence            35789999999999997666 58999985311      1 224556677888777753   23455555442        


Q ss_pred             CCCeEEEEEeecCCC
Q 028725           98 SVSRIFLIFEYVPNG  112 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~  112 (205)
                       ....++|||++++.
T Consensus       103 -~~~~~lVME~L~~~  116 (401)
T PRK09550        103 -EELAVTVMEDLSDH  116 (401)
T ss_pred             -CCCCEEEEecCCCc
Confidence             34568999999764

>PLN02236 choline kinase

Probab=97.59  E-value=0.0014  Score=52.29  Aligned_cols=143  Identities=14%  Similarity=0.113  Sum_probs=80.5

Q ss_pred             ceeeccCcceEEEEEEecC-----CcEEEEEEecccCCcCHHHHHHHHHHHhccCCCccc-ccccceeeecccCCCCCeE
Q 028725           29 SAFMGEGSKGQMYRGRLKN-----GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV-SALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~~-----~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~-~~~~~~~~~~~~~~~~~~~  102 (205)
                      ...+..|-...+|++...+     ++.+++|+...... ..-+..+|..+++.+...++. ++++.+.        +   
T Consensus        41 i~~l~gGlTN~~y~v~~~~~~~~~~~~~v~Ri~g~~t~-~~idR~~E~~~~~~l~~~gl~P~~~~~~~--------~---  108 (344)
T PLN02236         41 VIPLKGAMTNEVFQIKWPTKEGNLGRKVLVRIYGEGVE-LFFDRDDEIRTFECMSRHGQGPRLLGRFP--------N---  108 (344)
T ss_pred             EEEcCCcccceeEEEEeCCCCCCCCCeEEEEEccCCCC-eeechHHHHHHHHHHHHcCCCCceEEEEC--------C---
Confidence            3445567888999987532     36789998865433 222346788888888655554 3344331        1   


Q ss_pred             EEEEeecCCCcHHHh----------h----c----cC-CC--CCCCHHHHHHHHHHH-----------------HHHHHH
Q 028725          103 FLIFEYVPNGTLRSW----------I----S----GH-AW--QSLTWTQRISAAIGV-----------------ARGIQF  144 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~----------~----~----~~-~~--~~~~~~~~~~i~~~i-----------------~~~l~~  144 (205)
                      ..+.+|+++.++...          +    .    .. ..  ....+..+..+..++                 ...+..
T Consensus       109 g~v~efi~g~~l~~~~l~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~  188 (344)
T PLN02236        109 GRVEEFIHARTLSAADLRDPEISALIAAKLREFHSLDMPGPKNVLLWDRLRNWLKEAKNLCSPEEAKEFRLDSLEDEINL  188 (344)
T ss_pred             ceEEEeeCCCCCCHHHcCChHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhhcCcchhhhcCHHHHHHHHHH
Confidence            147888876555321          0    0    00 00  011222222222111                 111111


Q ss_pred             ----hhc-CCCCceeecCCccccEEeCC-CCceeEcCCCchhhcc
Q 028725          145 ----LHT-GIVPGVFSNNLKITDILLDQ-NLVAKISSYNLPLLAE  183 (205)
Q Consensus       145 ----lh~-~~~~~i~h~dlkp~nilv~~-~~~~~l~Dfg~a~~~~  183 (205)
                          +.. .....++|+|+++.||++++ ++.+.++||..+....
T Consensus       189 L~~~~~~~~~~~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~~~~  233 (344)
T PLN02236        189 LEKELSGDDQEIGFCHNDLQYGNIMIDEETRAITIIDYEYASYNP  233 (344)
T ss_pred             HHHHhcccCCCceEEeCCCCcCcEEEeCCCCcEEEEeehhccccc
Confidence                121 22246899999999999986 4689999999986544

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=97.51  E-value=2.3e-05  Score=68.68  Aligned_cols=145  Identities=13%  Similarity=0.178  Sum_probs=95.8

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEecC-CcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~~-~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      .....+.+.+.+..+.++.++.+.... |-..+.++.....   ....+....+-..+-...+|.++...-.+       
T Consensus       801 sS~d~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~-------  873 (1205)
T KOG0606|consen  801 SSPDGFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSF-------  873 (1205)
T ss_pred             CCCccceecccccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCCceecccCCC-------
Confidence            445667777888899999988877432 4333334332221   11122222222222222344444433321       


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                      +.....+++++++.+++|.+.+...+  ..+.+-.......+..+..+||.   ..+.|+|++|.|.+...++...+.||
T Consensus       874 ~~rsP~~L~~~~~~~~~~~Skl~~~~--~~saepaRs~i~~~vqs~e~L~s---~~r~h~~~~p~~~l~~~~gh~~l~~~  948 (1205)
T KOG0606|consen  874 PCRSPLPLVGHYLNGGDLPSKLHNSG--CLSAEPARSPILERVQSLESLHS---SLRKHRDLKPDSLLIAYDGHRPLTDF  948 (1205)
T ss_pred             CCCCCcchhhHHhccCCchhhhhcCC--CcccccccchhHHHHhhhhcccc---chhhcccccccchhhcccCCcccCcc
Confidence            23667899999999999999887654  45555555667778889999999   56899999999999999999999999


Q ss_pred             C
Q 028725          177 N  177 (205)
Q Consensus       177 g  177 (205)
                      +
T Consensus       949 ~  949 (1205)
T KOG0606|consen  949 G  949 (1205)
T ss_pred             c
Confidence            7

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=97.38  E-value=0.003  Score=48.75  Aligned_cols=35  Identities=14%  Similarity=0.250  Sum_probs=28.6

Q ss_pred             CceeecCCccccEEeCCCCc-eeEcCCCchhhcccc
Q 028725          151 PGVFSNNLKITDILLDQNLV-AKISSYNLPLLAENA  185 (205)
Q Consensus       151 ~~i~h~dlkp~nilv~~~~~-~~l~Dfg~a~~~~~~  185 (205)
                      ..++|+|++|.|+++++++. .-|+||+.+...+..
T Consensus       185 ~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~iGDPa  220 (276)
T cd05152         185 TVLVHGDLHPGHILIDEDARVTGLIDWTEAKVGDPA  220 (276)
T ss_pred             CeeEeCCCCCCcEEEeCCCCEEEEECcHhcccCCHH
Confidence            45899999999999997554 579999999766543

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=97.34  E-value=0.00018  Score=60.74  Aligned_cols=65  Identities=22%  Similarity=0.293  Sum_probs=51.7

Q ss_pred             HHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccccc----------ccccccccccccCCCCC
Q 028725          137 GVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE----------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       137 ~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~----------~~~~~~~~~~~~aPE~~  203 (205)
                      +...|+.|+|++  .+++|++|.|++|.++..+.+||+.|+.+.....+.          .+........|.|||..
T Consensus       107 ~v~dgl~flh~s--Ak~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~  181 (700)
T KOG2137|consen  107 NVADGLAFLHRS--AKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYL  181 (700)
T ss_pred             cccchhhhhccC--cceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhh
Confidence            344899999997  899999999999999999999999999886555421          11223677789999974

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=97.18  E-value=0.008  Score=47.18  Aligned_cols=36  Identities=14%  Similarity=0.342  Sum_probs=31.8

Q ss_pred             CceeecCCccccEEeCCCCceeEcCCCchhhccccc
Q 028725          151 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE  186 (205)
Q Consensus       151 ~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~  186 (205)
                      ..++|||+.+.|+++++...+-|+||+++.+.+...
T Consensus       198 ~~lvHGD~~~gNlii~~~~~~gVlDwe~~~lGDP~~  233 (321)
T COG3173         198 PVLVHGDYRPGNLIIDPGRPTGVLDWELATLGDPLE  233 (321)
T ss_pred             ceeeeCCcccCCEEEeCCCeeEEEeccccccCCcHH
Confidence            468999999999999999889999999998777654

>PRK11768 serine/threonine protein kinase; Provisional

Probab=97.14  E-value=0.041  Score=43.53  Aligned_cols=97  Identities=10%  Similarity=0.180  Sum_probs=54.4

Q ss_pred             ccccCHHHHHHHhcCCCcc---e-eeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcc--cc
Q 028725           11 YRTFSLEELEEATNNFDTS---A-FMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL--VS   84 (205)
Q Consensus        11 ~~~~~~~~~~~~~~~y~~~---~-~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i--~~   84 (205)
                      +..++.+.+......+-+.   + ..-.+.-..||.....++..+++|+.... .........|.+.+..+....+  +.
T Consensus         8 ~~~l~p~~~~~a~~~~g~~~~~~~~~l~s~eN~vy~v~~~~~~~~vlKv~r~~-~~~~~~i~~E~~~l~~L~~~gipv~~   86 (325)
T PRK11768          8 FQTLTPDLILDALESLGLRVDGRLLALNSYENRVYQFGDEDGRRVVAKFYRPE-RWSDAQILEEHAFALELAEAEIPVVA   86 (325)
T ss_pred             CCCCChHHHHHHHHHcCCCCccceEeeccccceEEEEecCCCCEEEEEEcCcc-cCCHHHHHHHHHHHHHHHHCCCCCCC
Confidence            4556666666666665332   1 11234456789888766788999988532 2345556667776665532222  11


Q ss_pred             ---cccceeeecccCCCCCeEEEEEeecCCCc
Q 028725           85 ---ALGHCFECYFDDSSVSRIFLIFEYVPNGT  113 (205)
Q Consensus        85 ---~~~~~~~~~~~~~~~~~~~lv~e~~~~~~  113 (205)
                         .-|....     ..++..+.++++++|..
T Consensus        87 p~~~~G~~~~-----~~~g~~~~l~~~~~G~~  113 (325)
T PRK11768         87 PLAFNGQTLH-----EHQGFRFALFPRRGGRA  113 (325)
T ss_pred             CccCCCCEEE-----EECCEEEEEEeeeCCCC
Confidence               1121111     11346788999987753

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=97.12  E-value=0.0084  Score=47.51  Aligned_cols=32  Identities=9%  Similarity=0.112  Sum_probs=26.8

Q ss_pred             eeecCCccccEEeCC-CCceeEcCCCchhhccc
Q 028725          153 VFSNNLKITDILLDQ-NLVAKISSYNLPLLAEN  184 (205)
Q Consensus       153 i~h~dlkp~nilv~~-~~~~~l~Dfg~a~~~~~  184 (205)
                      ++|+|+.+.||++++ ++.++++||+.|.....
T Consensus       184 ~CHnDl~~~NiL~~~~~~~l~lID~EYag~nd~  216 (330)
T PLN02421        184 FAHNDLLSGNLMLNEDEGKLYFIDFEYGSYSYR  216 (330)
T ss_pred             EEECCCCcccEEEeCCCCcEEEEcccccCCCcc
Confidence            689999999999974 57899999998864443

>PRK06148 hypothetical protein; Provisional

Probab=97.06  E-value=0.017  Score=52.47  Aligned_cols=32  Identities=16%  Similarity=0.213  Sum_probs=26.5

Q ss_pred             CCCceeecCCccccEEeCCCC--ce-eEcCCCchh
Q 028725          149 IVPGVFSNNLKITDILLDQNL--VA-KISSYNLPL  180 (205)
Q Consensus       149 ~~~~i~h~dlkp~nilv~~~~--~~-~l~Dfg~a~  180 (205)
                      ...+++|+|+.+.||+++.++  .+ -|+|||.+.
T Consensus       201 Lp~~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~  235 (1013)
T PRK06148        201 LPAQVIHNDANDYNILVDADDGERISGLIDFGDAV  235 (1013)
T ss_pred             CCcceECCCCCcccEEEcCCCCcceEEEEECcccc
Confidence            346899999999999999775  44 599999874

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=97.06  E-value=0.033  Score=44.10  Aligned_cols=163  Identities=14%  Similarity=0.252  Sum_probs=85.6

Q ss_pred             ccccCHHHHHHHhcCCCcce-----eeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCc----
Q 028725           11 YRTFSLEELEEATNNFDTSA-----FMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH----   81 (205)
Q Consensus        11 ~~~~~~~~~~~~~~~y~~~~-----~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~----   81 (205)
                      ...+.-.++......|..+-     .|.. .-..+|.....+|+. ++|+....  ........|+..+.-+.-.+    
T Consensus         8 ~~~~~~~~~~~~l~~~~~g~~~~~~~l~s-~eN~~f~~~~~~g~~-iLki~~~~--~~~~~i~~el~~l~~La~~~i~v~   83 (331)
T COG2334           8 FTPLTSDEAAAALEAYHYGLDGSLRGLNS-EENSNFRVQTEDGRY-ILKIYRPG--WTRAEIPFELALLQHLAERGIPVP   83 (331)
T ss_pred             ccCcChHHHHHHHHhcCcCcccccccccc-ccCceEEEEecCCCe-EEEEecCC--CCHHHHHHHHHHHHHHHHcCCCCC
Confidence            34444455555555543332     2333 445678887665555 88988754  33444455666665553211    


Q ss_pred             --ccccccceeeecccCCCCCeEEEEEeecCCCcHHH-h-----------h-------cc----CCC--CCCCHHH----
Q 028725           82 --LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRS-W-----------I-------SG----HAW--QSLTWTQ----  130 (205)
Q Consensus        82 --i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~-~-----------~-------~~----~~~--~~~~~~~----  130 (205)
                        +...-|.......   +....+.++++++|..+.. .           +       ..    ++.  ....|..    
T Consensus        84 ~Pl~~~dG~~l~~~~---~~~r~a~lf~~l~G~~~~~~~~~~~~~~lG~~LgrlH~a~~~f~~~~p~~~~~~~w~~~~~~  160 (331)
T COG2334          84 APLPSLDGELLEALS---GGPRPAALFEYLPGRPLERDDNAEQLEELGRMLGRLHLALRGFPFERPNALRRLEWDILEPR  160 (331)
T ss_pred             CCccCCCcchhhhcc---CCceeEEEEEecCCcCcCCCCcHHHHHHHHHHHHHHHHHhCcCCccCCCcccccchhhhcch
Confidence              3333333322111   0137888999999877762 1           0       00    000  0112210    


Q ss_pred             ---------HHHHHHHHHHHHHHhhc----CCCCc---eeecCCccccEEeCCCCc-eeEcCCCchh
Q 028725          131 ---------RISAAIGVARGIQFLHT----GIVPG---VFSNNLKITDILLDQNLV-AKISSYNLPL  180 (205)
Q Consensus       131 ---------~~~i~~~i~~~l~~lh~----~~~~~---i~h~dlkp~nilv~~~~~-~~l~Dfg~a~  180 (205)
                               -.....++...+..+.+    .....   ++|+|+.|.||+++.+.. +.++||+.+.
T Consensus       161 ~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~lp~~~~~iIH~D~~~~NVl~d~~~~~~g~iDFdDa~  227 (331)
T COG2334         161 ALLRLDLVEPEDLRAALLAALDRLLARLPAHLPALGDQIIHGDLHPDNVLFDDDTDVSGFIDFDDAG  227 (331)
T ss_pred             hhhhhcccCchhhHHHHHHHHHHHHhhchhhCCcccceeeecCCCccceeEcCCCCeeeEEEccccc
Confidence                     00112223333333322    11123   999999999999998874 8999999885

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=96.98  E-value=0.013  Score=45.91  Aligned_cols=31  Identities=10%  Similarity=0.190  Sum_probs=28.1

Q ss_pred             CceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          151 PGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       151 ~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .+++|+|+.+.|++++.++.+.++||..+..
T Consensus       196 ~~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~~  226 (309)
T TIGR02904       196 TVLVHGKLSLSHFLYDETRGGYFINFEKASF  226 (309)
T ss_pred             eeeeCCCCcHHhEEEcCCCCEEEEEhhhccc
Confidence            5799999999999999999999999998853

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>PLN02756 S-methyl-5-thioribose kinase

Probab=96.92  E-value=0.068  Score=43.53  Aligned_cols=74  Identities=8%  Similarity=0.012  Sum_probs=47.4

Q ss_pred             cceeeccCcceEEEEEEecCCcEEEEEEeccc----CC---cCHHHHHHHHHHHhccC---CCcccccccceeeecccCC
Q 028725           28 TSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMK----KS---HSTRNFMHHIELISKLR---HCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        28 ~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~----~~---~~~~~~~~e~~~l~~l~---~~~i~~~~~~~~~~~~~~~   97 (205)
                      ..+.+|.|....||+.... ++.++||.-...    +.   .....-..|...|+.+.   ...+++++.++.       
T Consensus        36 ~~~eiggGn~N~VyrV~~~-~~svVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~~p~~VPkVy~~de-------  107 (418)
T PLN02756         36 KIKEVGDGNLNFVYIVVSS-SGSFVIKQALPYIRCIGESWPMTKERAYFEATALREHGRLCPDHVPEVYHFDR-------  107 (418)
T ss_pred             eEEEcCCCceeeEEEEEcC-CccEEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhcCCCCCCeEEEECC-------
Confidence            3557899999999998764 556888876421    11   23334444566665553   246677777663       


Q ss_pred             CCCeEEEEEeecCC
Q 028725           98 SVSRIFLIFEYVPN  111 (205)
Q Consensus        98 ~~~~~~lv~e~~~~  111 (205)
                        +..+++||++++
T Consensus       108 --d~~vlvME~L~~  119 (418)
T PLN02756        108 --TMALIGMRYLEP  119 (418)
T ss_pred             --CCCEEEEeecCC
Confidence              346788999966

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=96.90  E-value=0.017  Score=46.18  Aligned_cols=72  Identities=6%  Similarity=-0.001  Sum_probs=44.5

Q ss_pred             eeccCcceEEEEEEecCC-cEEEEEEecc------cC-CcCHHHHHHHHHHHhccC--CC-cccccccceeeecccCCCC
Q 028725           31 FMGEGSKGQMYRGRLKNG-TFIAIRCLKM------KK-SHSTRNFMHHIELISKLR--HC-HLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        31 ~lg~g~~g~V~~~~~~~~-~~vaiK~~~~------~~-~~~~~~~~~e~~~l~~l~--~~-~i~~~~~~~~~~~~~~~~~   99 (205)
                      .||.|....||++...+| +.++||.-..      .+ +-..+....|...|+...  .| .+++++.+-         .
T Consensus         2 EigdGnlN~VfrV~~~~g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P~~vP~vy~~D---------~   72 (370)
T TIGR01767         2 EVGDGNLNLVFHVYDQEGDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEHVPHLVPRIFHFD---------T   72 (370)
T ss_pred             cCCCCceEEEEEEEcCCCCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCccccCeEEEEc---------c
Confidence            478899999999996544 5788887521      11 334455556777776653  23 333443321         3


Q ss_pred             CeEEEEEeecCC
Q 028725          100 SRIFLIFEYVPN  111 (205)
Q Consensus       100 ~~~~lv~e~~~~  111 (205)
                      +...++||+++.
T Consensus        73 e~~~~vMEdL~~   84 (370)
T TIGR01767        73 EMAVTVMEDLSH   84 (370)
T ss_pred             ccceehHhhCcc
Confidence            456689998854

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=96.69  E-value=0.025  Score=43.95  Aligned_cols=75  Identities=15%  Similarity=0.186  Sum_probs=43.5

Q ss_pred             CcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccC---CCcccccccceeeecccCCCCCeEE
Q 028725           27 DTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR---HCHLVSALGHCFECYFDDSSVSRIF  103 (205)
Q Consensus        27 ~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~  103 (205)
                      ...+.++.|.-..+|... .+++.+.+|+-.   ......+..|..-|+.+.   .-.+++++.+...       .+..+
T Consensus        20 ~~~~~v~GG~i~~a~~~~-~~~~~~FvK~~~---~~~~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~-------~~~~f   88 (288)
T PF03881_consen   20 TSIEPVSGGDINEAYRLD-TDGGSYFVKVNS---ESGRDMFEGEAEGLKALAEANPIRVPKVIAWGEY-------DDDAF   88 (288)
T ss_dssp             -EEEEE--SSSSEEEEEE-TTS-EEEEEEEE---GGGCCHHHHHHHHHHHHCHTTTSBS--EEEEEE--------SSCCE
T ss_pred             eeeEecCCCChhheEEEE-CCCccEEEEecC---hhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEEee-------cCCce
Confidence            344568889999999887 457889999876   233456677777777773   3445566665543       33458


Q ss_pred             EEEeecCCC
Q 028725          104 LIFEYVPNG  112 (205)
Q Consensus       104 lv~e~~~~~  112 (205)
                      +++|+++.+
T Consensus        89 Llle~l~~~   97 (288)
T PF03881_consen   89 LLLEFLEMG   97 (288)
T ss_dssp             EEEE-----
T ss_pred             EEEEeecCC
Confidence            999998765

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=96.52  E-value=0.0094  Score=47.53  Aligned_cols=75  Identities=16%  Similarity=0.164  Sum_probs=57.8

Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      +...|++|++. |+++.. ++     .-.+++...++.+.+..+.-+..+  .+.-|||+.-.||+|+ .|++.|+||.+
T Consensus       298 ~~y~yl~~kdh-gt~is~-ik-----~~~~~e~lsff~s~~sil~~lekk--f~fehrnlt~~niLId-~GnvtLIDfkl  367 (488)
T COG5072         298 TLYLYLHFKDH-GTPISI-IK-----ADRSEEELSFFWSCISILDILEKK--FPFEHRNLTLDNILID-EGNVTLIDFKL  367 (488)
T ss_pred             ceEEEEEEecC-Cceeee-ee-----cccHHHHHHHHHHHHHHHhhhhhc--CCcccccccccceeee-cCceEEEEeee
Confidence            45667777766 445442 22     234677788888888888888876  7889999999999999 99999999999


Q ss_pred             hhhcc
Q 028725          179 PLLAE  183 (205)
Q Consensus       179 a~~~~  183 (205)
                      ++...
T Consensus       368 sRl~~  372 (488)
T COG5072         368 SRLSY  372 (488)
T ss_pred             eeccc
Confidence            98433

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=96.44  E-value=0.028  Score=41.88  Aligned_cols=90  Identities=8%  Similarity=0.071  Sum_probs=57.6

Q ss_pred             CHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHH
Q 028725           63 STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGI  142 (205)
Q Consensus        63 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l  142 (205)
                      ....+.++.++++++.  +|+++..         ...-...+++|.+-...            .  ...-.+..+ +++|
T Consensus       101 ~~~~y~nky~v~Armh--GilrL~N---------Dn~~~yGvIlE~Cy~~~------------i--~~~N~i~ag-i~~L  154 (308)
T PF07387_consen  101 NDALYFNKYRVFARMH--GILRLKN---------DNNYKYGVILERCYKIK------------I--NFSNFITAG-IKDL  154 (308)
T ss_pred             chhhhhhhhhHHHHhh--heeEeec---------CCCceeEEEEeeccCcc------------c--chhHHHHHh-HHHH
Confidence            3445567777777654  5666542         12445678888883311            0  111112222 4556


Q ss_pred             HHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          143 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       143 ~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      .-.|++ ..+.+|||..|+||+-|+.|.+||.|-+..
T Consensus       155 ~~fH~~-~~~~lHGD~np~NiM~D~~G~lKlVDP~~L  190 (308)
T PF07387_consen  155 MDFHSE-NQHCLHGDCNPDNIMCDKFGYLKLVDPVCL  190 (308)
T ss_pred             HHhhcc-CCCeecCCCChhheeecCCCCEEecChhhh
Confidence            677842 268999999999999999999999998854

The function of this family is unknown.

>PTZ00384 choline kinase; Provisional

Probab=96.12  E-value=0.061  Score=43.57  Aligned_cols=76  Identities=18%  Similarity=0.226  Sum_probs=44.8

Q ss_pred             cceeeccCcceEEEEEEecCC--c-----EEEEEEecccCCcCHHHHHHHHHHHhccCCCcccc-cccceeeecccCCCC
Q 028725           28 TSAFMGEGSKGQMYRGRLKNG--T-----FIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVS-ALGHCFECYFDDSSV   99 (205)
Q Consensus        28 ~~~~lg~g~~g~V~~~~~~~~--~-----~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~-~~~~~~~~~~~~~~~   99 (205)
                      ..+.+..|-...+|++...++  .     .|.++... ......-+-.+|.++++.+...++.+ +++.+          
T Consensus        54 ~i~~l~gGLTN~l~~v~~~~~~~~~~~~k~Vl~R~~g-~~~~l~IdR~~E~~i~~~Ls~~glgP~l~~~f----------  122 (383)
T PTZ00384         54 EIKKMNNGITNQVYQATLVDGDKDRYPIKSVCIKKSS-TYNSLVIDNDLQYNIAKLLGDNNFGPKIIGRF----------  122 (383)
T ss_pred             EEEEeCCcccceEEEEEecCCCCCccccceEEEEecc-CCCceEeccHHHHHHHHHHHhCCCCCeEEEec----------
Confidence            344565688889999875432  1     24444432 22222233456888888887666554 44433          


Q ss_pred             CeEEEEEeecCCCcHH
Q 028725          100 SRIFLIFEYVPNGTLR  115 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~  115 (205)
                       .-+++.||++|.++.
T Consensus       123 -~~g~l~efIeGr~l~  137 (383)
T PTZ00384        123 -GDFTIQEWVEGNTMG  137 (383)
T ss_pred             -CCEEEEEEeccccCC
Confidence             136888999886554

>PRK12396 5-methylribose kinase; Reviewed

Probab=96.10  E-value=0.064  Score=43.48  Aligned_cols=74  Identities=8%  Similarity=0.026  Sum_probs=46.6

Q ss_pred             ceeeccCcceEEEEEEecC-CcEEEEEEecc-----cC-CcCHHHHHHHHHHHhccC--CC-cccccccceeeecccCCC
Q 028725           29 SAFMGEGSKGQMYRGRLKN-GTFIAIRCLKM-----KK-SHSTRNFMHHIELISKLR--HC-HLVSALGHCFECYFDDSS   98 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~~-~~~vaiK~~~~-----~~-~~~~~~~~~e~~~l~~l~--~~-~i~~~~~~~~~~~~~~~~   98 (205)
                      .+.||.|....||++...+ ++.++||.-..     .+ +-..+...-|...|+...  .| .+++++.+-         
T Consensus        34 ~~eigdGnlN~VfrV~~~~~~~svIVKQAlp~vRv~~swpL~~~R~~~E~~aL~~~~~~~P~~VP~vy~~D---------  104 (409)
T PRK12396         34 CKEIGDGNLNYVFRVWDEQKNISVIVKQAGDTARISDEFKLSTNRIRIESDVLQLEEELAPGLVPKVYLFD---------  104 (409)
T ss_pred             eeEcCCCceEEEEEEeeCCCCceEEEEeccHhhccCCCCCCChHHHHHHHHHHHHHHhhCCCcCCeEEEEC---------
Confidence            4578999999999999643 56788886521     11 334555666777777653  34 344444322         


Q ss_pred             CCeEEEEEeecCC
Q 028725           99 VSRIFLIFEYVPN  111 (205)
Q Consensus        99 ~~~~~lv~e~~~~  111 (205)
                      .....+|||+++.
T Consensus       105 ~e~~~~vMEdL~~  117 (409)
T PRK12396        105 SVMNCCVMEDLSD  117 (409)
T ss_pred             cHHhhHHHHhCcc
Confidence            3455678888753

>PHA03111 Ser/Thr kinase; Provisional

Probab=96.04  E-value=0.014  Score=45.94  Aligned_cols=56  Identities=13%  Similarity=0.044  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHh-hcCCCCceeecCCccccEEeCCCC------------------ceeEcCCCchhhcc
Q 028725          128 WTQRISAAIGVARGIQFL-HTGIVPGVFSNNLKITDILLDQNL------------------VAKISSYNLPLLAE  183 (205)
Q Consensus       128 ~~~~~~i~~~i~~~l~~l-h~~~~~~i~h~dlkp~nilv~~~~------------------~~~l~Dfg~a~~~~  183 (205)
                      .+.+..++.|++.-.-.. .-.+-...+|-||||.||||.++.                  .++|.||.+|+..+
T Consensus       278 ~~YikfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~~~i~I~~~~~~~vF~Epi~~~LnDFDfSqv~~  352 (444)
T PHA03111        278 VEYIKFIFLQIALLYIKIYELPCCDNFLHVDLKPDNILIFDSDEPISITLKDATYVFNEPIKACLNDFDFSQVAN  352 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhhcCCCcceeeeccCCCCcEEEecCCCcEEEEECCeEEEeccchhhhhcccCHHHHcc
Confidence            345667788887654333 222225789999999999995432                  36788999887554

>PTZ00296 choline kinase; Provisional

Probab=95.98  E-value=0.12  Score=42.72  Aligned_cols=75  Identities=15%  Similarity=0.108  Sum_probs=45.7

Q ss_pred             cceeeccCcceEEEEEEecC---------CcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccc-cccceeeecccCC
Q 028725           28 TSAFMGEGSKGQMYRGRLKN---------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVS-ALGHCFECYFDDS   97 (205)
Q Consensus        28 ~~~~lg~g~~g~V~~~~~~~---------~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~-~~~~~~~~~~~~~   97 (205)
                      ..+.|..|-.-.+|++...+         ++.|++++.-...... -.-.+|..+++.+...+|.+ +++.+.       
T Consensus       109 ~i~~l~gGlTN~~f~v~~~~~~~~~~~~~~~~~lvRiyG~~te~l-IdR~~E~~v~~~ls~~gi~P~l~~~f~-------  180 (442)
T PTZ00296        109 RVNQILSGLTNQLFEVSLKEETANNYPSIRRRVLFRIYGKDVDEL-YNPISEFEVYKTMSKYRIAPQLLNTFS-------  180 (442)
T ss_pred             EEEEecCcccCceEEEEecCCCCccccCcCceEEEEecCCCccce-eCHHHHHHHHHHHHHCCCCCceEEEeC-------
Confidence            44566677778888887542         4578888885443333 24566888877776555543 333221       


Q ss_pred             CCCeEEEEEeecCCCcH
Q 028725           98 SVSRIFLIFEYVPNGTL  114 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L  114 (205)
                          -+.+.+|++|.+|
T Consensus       181 ----gg~I~efi~g~~l  193 (442)
T PTZ00296        181 ----GGRIEEWLYGDPL  193 (442)
T ss_pred             ----CCEEEEeeCCccC
Confidence                1356788877643

>PRK10271 thiK thiamine kinase; Provisional

Probab=95.87  E-value=0.0061  Score=44.07  Aligned_cols=33  Identities=0%  Similarity=0.010  Sum_probs=27.5

Q ss_pred             CceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          151 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       151 ~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      .-.+|+|+.|.|+++++++ ++|+||+.+...+.
T Consensus        77 ~~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~gDp  109 (188)
T PRK10271         77 LAPLHMDVHAGNLVHSASG-LRLIDWEYAGDGDI  109 (188)
T ss_pred             eeeecCCCCCccEEEECCC-EEEEeCCcccCCCH
Confidence            3468999999999998877 88999999865553

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=95.77  E-value=0.021  Score=44.59  Aligned_cols=29  Identities=14%  Similarity=0.228  Sum_probs=25.7

Q ss_pred             CceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          151 PGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       151 ~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      .+++|+|+.+.|++++. +.+.|+||+.+.
T Consensus       187 ~~liHgD~~~~Nil~~~-~~i~lIDfd~~~  215 (313)
T TIGR02906       187 RGFCHQDYAYHNILLKD-NEVYVIDFDYCT  215 (313)
T ss_pred             CceEcCCCCcccEEEeC-CcEEEEECcccc
Confidence            68999999999999988 678999999663

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=95.71  E-value=0.004  Score=41.67  Aligned_cols=48  Identities=21%  Similarity=0.403  Sum_probs=35.3

Q ss_pred             cCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHh
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELIS   75 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~   75 (205)
                      ..|+ .+.|+.|+.|+||+|..++|++||+|+..   +...+.+...+.+++
T Consensus        12 ~~fd-~~PlasASiaQVh~a~l~~g~~VaVKV~r---P~i~~~i~~Dl~~l~   59 (119)
T PF03109_consen   12 DEFD-PEPLASASIAQVHRARLKDGEEVAVKVQR---PGIEEQIEADLRILR   59 (119)
T ss_pred             HHCC-cchhhheehhhheeeeecccchhhhhhcc---hHHHHHHHHHHHHHH
Confidence            3444 46899999999999999889999999986   334444445555443

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=95.45  E-value=0.024  Score=41.75  Aligned_cols=32  Identities=16%  Similarity=0.206  Sum_probs=22.0

Q ss_pred             CceeecCCccccEEe-CCCCceeEcCCCchhhc
Q 028725          151 PGVFSNNLKITDILL-DQNLVAKISSYNLPLLA  182 (205)
Q Consensus       151 ~~i~h~dlkp~nilv-~~~~~~~l~Dfg~a~~~  182 (205)
                      .-++|+|+.|.||++ +.++.++++||..|...
T Consensus       143 ~v~cHnDl~~~Nil~~~~~~~~~lIDfEya~~n  175 (211)
T PF01633_consen  143 LVFCHNDLNPGNILINNKDGEVKLIDFEYAGYN  175 (211)
T ss_dssp             EEEE-S--SGGGEEETSSSSCEEE--GTT-EEE
T ss_pred             ceEeeccCccccEEeccCCCeEEEecHHHHhhc
Confidence            357899999999999 78899999999988533

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>PF05445 Pox_ser-thr_kin: Poxvirus serine/threonine protein kinase; InterPro: IPR008790 This family of proteins contain poxvirus serine/threonine protein kinases, which are essential for phosphorylation of virion proteins during virion assembly

Probab=95.42  E-value=0.045  Score=43.38  Aligned_cols=56  Identities=11%  Similarity=0.049  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHh-hcCCCCceeecCCccccEEeCCCC------------------ceeEcCCCchhhcc
Q 028725          128 WTQRISAAIGVARGIQFL-HTGIVPGVFSNNLKITDILLDQNL------------------VAKISSYNLPLLAE  183 (205)
Q Consensus       128 ~~~~~~i~~~i~~~l~~l-h~~~~~~i~h~dlkp~nilv~~~~------------------~~~l~Dfg~a~~~~  183 (205)
                      ...+..++.|++.-.--. .-.+-...+|-||||.||||.++.                  .++|-||.+|+..+
T Consensus       274 ~~YvkfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~~~i~I~~~~~~~vF~Epi~~~LnDFDfSqv~~  348 (434)
T PF05445_consen  274 VEYVKFIFLQIALLYIKIYELPCCTNFLHVDLKPDNILIFDSKEPIRIKFGNRNYVFKEPIRCCLNDFDFSQVAN  348 (434)
T ss_pred             HHHHHHHHHHHHHHHeeeecCCCcceeeecccCcCcEEEecCCCceEEEECCeEEEecccceeeecccCHHHhcc
Confidence            345666778877433112 111125789999999999995332                  36889999987554

; GO: 0004672 protein kinase activity, 0005524 ATP binding

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	205
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		5e-22
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		5e-22
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		7e-21
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		2e-20
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		1e-15
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		1e-15
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		1e-15
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		2e-14
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		5e-10
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		5e-10
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		6e-10
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		7e-10
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		8e-10
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		8e-10
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		8e-10
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		8e-10
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		9e-10
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		9e-10
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		1e-09
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		1e-09
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		1e-09
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		2e-09
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		2e-09
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-09
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		2e-09
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-09
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		2e-09
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-09
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		2e-09
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		3e-09
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		3e-09
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		3e-09
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		5e-09
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		7e-09
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		7e-09
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-08
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		2e-08
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		2e-08
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		2e-08
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		4e-08
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		6e-08
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		6e-08
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		8e-08
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		1e-07
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		1e-07
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		2e-07
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		2e-07
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		2e-07
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		2e-07
1fvr_A	327	Tie2 Kinase Domain Length = 327		3e-07
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		3e-07
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		4e-07
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		4e-07
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		4e-07
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		4e-07
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		5e-07
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		5e-07
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		5e-07
3kmw_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		5e-07
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		6e-07
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		6e-07
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		6e-07
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		6e-07
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		6e-07
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		6e-07
2pl0_A	289	Lck Bound To Imatinib Length = 289		6e-07
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		6e-07
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		6e-07
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		7e-07
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		7e-07
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		7e-07
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		7e-07
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		7e-07
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		7e-07
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		8e-07
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		9e-07
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		9e-07
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		9e-07
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-06
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-06
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		1e-06
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		1e-06
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		1e-06
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		1e-06
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		1e-06
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		1e-06
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		1e-06
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		1e-06
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		1e-06
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		1e-06
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		1e-06
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		1e-06
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		1e-06
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		1e-06
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		1e-06
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		1e-06
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		1e-06
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		1e-06
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		1e-06
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		1e-06
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		1e-06
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		2e-06
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		2e-06
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		2e-06
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		2e-06
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		2e-06
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		2e-06
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		2e-06
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		2e-06
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		2e-06
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		2e-06
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		2e-06
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		2e-06
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		2e-06
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		2e-06
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		3e-06
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		3e-06
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		3e-06
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		3e-06
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		3e-06
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		3e-06
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		3e-06
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		3e-06
3a4o_X	286	Lyn Kinase Domain Length = 286		5e-06
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		5e-06
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		6e-06
3kmu_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		8e-06
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		8e-06
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		8e-06
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		8e-06
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		9e-06
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		1e-05
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		1e-05
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		1e-05
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		1e-05
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		2e-05
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		3e-05
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		4e-05
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		5e-05
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		5e-05
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		5e-05
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		6e-05
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		6e-05
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		6e-05
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		9e-05
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		9e-05
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		9e-05
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		2e-04
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		2e-04
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		2e-04
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		2e-04
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		3e-04
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		3e-04
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		5e-04
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		5e-04
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		5e-04
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		6e-04
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		6e-04
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		6e-04
3vw6_A	269	Crystal Structure Of Human Apoptosis Signal-Regulat		6e-04
2clq_A	295	Structure Of Mitogen-Activated Protein Kinase Kinas		6e-04
3g2f_A	336	Crystal Structure Of The Kinase Domain Of Bone Morp		7e-04
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		7e-04
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		7e-04
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		7e-04
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		8e-04
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		8e-04

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 96/171 (56%), Gaps = 13/171 (7%)
Query: 10  AYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMH 69
           +YR   L +LEEATNNFD    +G G  G++Y+G L++G  +A++    + S     F  
Sbjct: 26  SYRV-PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFET 84
Query: 70  HIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAW--QSLT 127
            IE +S  RH HLVS +G C E        + + LI++Y+ NG L+  + G      S++
Sbjct: 85  EIETLSFCRHPHLVSLIGFCDE-------RNEMILIYKYMENGNLKRHLYGSDLPTMSMS 137
Query: 128 WTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           W QR+   IG ARG+ +LHT     +   ++K  +ILLD+N V KI+ + +
Sbjct: 138 WEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFGI 185

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 96/171 (56%), Gaps = 13/171 (7%)
Query: 10  AYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMH 69
           +YR   L +LEEATNNFD    +G G  G++Y+G L++G  +A++    + S     F  
Sbjct: 26  SYRV-PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFET 84
Query: 70  HIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAW--QSLT 127
            IE +S  RH HLVS +G C E        + + LI++Y+ NG L+  + G      S++
Sbjct: 85  EIETLSFCRHPHLVSLIGFCDE-------RNEMILIYKYMENGNLKRHLYGSDLPTMSMS 137
Query: 128 WTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           W QR+   IG ARG+ +LHT     +   ++K  +ILLD+N V KI+ + +
Sbjct: 138 WEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFGI 185

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 97/194 (50%), Gaps = 19/194 (9%)
Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTR-NFMHH 70
           + FSL EL+ A++NF     +G G  G++Y+GRL +GT +A++ LK ++       F   
Sbjct: 26  KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTE 85
Query: 71  IELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI--SGHAWQSLTW 128
           +E+IS   H +L+   G C        + +   L++ Y+ NG++ S +     +   L W
Sbjct: 86  VEMISMAVHRNLLRLRGFCM-------TPTERLLVYPYMANGSVASCLRERPESQPPLDW 138
Query: 129 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK- 187
            +R   A+G ARG+ +LH    P +   ++K  +ILLD+   A +  + L  L +  +  
Sbjct: 139 PKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXH 198
Query: 188 --------VGHVTP 193
                   +GH+ P
Sbjct: 199 VXXAVRGTIGHIAP 212

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 98/198 (49%), Gaps = 19/198 (9%)
Query: 8   LPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTR-N 66
           L   + FSL EL+ A++NF     +G G  G++Y+GRL +G  +A++ LK +++      
Sbjct: 14  LGQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQ 73
Query: 67  FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI--SGHAWQ 124
           F   +E+IS   H +L+   G C        + +   L++ Y+ NG++ S +     +  
Sbjct: 74  FQTEVEMISMAVHRNLLRLRGFCM-------TPTERLLVYPYMANGSVASCLRERPESQP 126
Query: 125 SLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN 184
            L W +R   A+G ARG+ +LH    P +   ++K  +ILLD+   A +  + L  L + 
Sbjct: 127 PLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDY 186
Query: 185 AE---------KVGHVTP 193
            +          +GH+ P
Sbjct: 187 KDXHVXXAVRGXIGHIAP 204

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 22/184 (11%)
Query: 11  YRTFSLEELEEATNNFDTSAF------MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST 64
           + +FS  EL+  TNNFD          MGEG  G +Y+G + N T +A++ L      +T
Sbjct: 6   FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTT-VAVKKLAAMVDITT 64
Query: 65  ----RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISG 120
               + F   I++++K +H +LV  LG  F    DD     + L++ Y+PNG+L   +S 
Sbjct: 65  EELKQQFDQEIKVMAKCQHENLVELLG--FSSDGDD-----LCLVYVYMPNGSLLDRLSC 117
Query: 121 -HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 179
                 L+W  R   A G A GI FLH          ++K  +ILLD+   AKIS + L 
Sbjct: 118 LDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLA 174
Query: 180 LLAE 183
             +E
Sbjct: 175 RASE 178

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 22/184 (11%)
Query: 11  YRTFSLEELEEATNNFDTSAF------MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST 64
           + +FS  EL+  TNNFD          MGEG  G +Y+G + N T +A++ L      +T
Sbjct: 12  FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTT-VAVKKLAAMVDITT 70
Query: 65  ----RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISG 120
               + F   I++++K +H +LV  LG  F    DD     + L++ Y+PNG+L   +S 
Sbjct: 71  EELKQQFDQEIKVMAKCQHENLVELLG--FSSDGDD-----LCLVYVYMPNGSLLDRLSC 123
Query: 121 -HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 179
                 L+W  R   A G A GI FLH          ++K  +ILLD+   AKIS + L 
Sbjct: 124 LDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLA 180
Query: 180 LLAE 183
             +E
Sbjct: 181 RASE 184

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 22/184 (11%)
Query: 11  YRTFSLEELEEATNNFDTSAF------MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST 64
           + +FS  EL+  TNNFD          MGEG  G +Y+G + N T +A++ L      +T
Sbjct: 12  FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTT-VAVKKLAAMVDITT 70
Query: 65  ----RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISG 120
               + F   I++++K +H +LV  LG  F    DD     + L++ Y+PNG+L   +S 
Sbjct: 71  EELKQQFDQEIKVMAKCQHENLVELLG--FSSDGDD-----LCLVYVYMPNGSLLDRLSC 123
Query: 121 -HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 179
                 L+W  R   A G A GI FLH          ++K  +ILLD+   AKIS + L 
Sbjct: 124 LDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLA 180
Query: 180 LLAE 183
             +E
Sbjct: 181 RASE 184

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 88/184 (47%), Gaps = 22/184 (11%)
Query: 11  YRTFSLEELEEATNNFDTSAF------MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST 64
           + +FS  EL+  TNNFD           GEG  G +Y+G + N T +A++ L      +T
Sbjct: 3   FHSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNNTT-VAVKKLAAMVDITT 61
Query: 65  ----RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISG 120
               + F   I++ +K +H +LV  LG  F    DD     + L++ Y PNG+L   +S 
Sbjct: 62  EELKQQFDQEIKVXAKCQHENLVELLG--FSSDGDD-----LCLVYVYXPNGSLLDRLSC 114
Query: 121 -HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 179
                 L+W  R   A G A GI FLH          ++K  +ILLD+   AKIS + L 
Sbjct: 115 LDGTPPLSWHXRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLA 171
Query: 180 LLAE 183
             +E
Sbjct: 172 RASE 175

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
             +   S   I+++ EY+  G+L  ++ G   + L   Q +  A  +A G+ ++      
Sbjct: 78  -LYAVVSEEPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM--- 133
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 134 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
             +   S   I+++ EY+  G+L  ++ G   + L   Q +  A  +A G+ ++      
Sbjct: 78  -LYAVVSEEPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM--- 133
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 134 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 19  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 70
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
             +   S   I+++ EY+  G+L  ++ G   + L   Q +  A  +A G+ ++      
Sbjct: 71  -LYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM--- 126
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 127 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 161

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
             +   S   I+++ EY+  G L  ++ G   + L   Q +  A  +A G+ ++      
Sbjct: 78  -LYAVVSEEPIYIVMEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM--- 133
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 134 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
             +   S   I+++ EY+  G+L  ++ G   + L   Q +  A  +A G+ ++      
Sbjct: 78  -LYAVVSEEPIYIVCEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM--- 133
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 134 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 17  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 68
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
             +   S   I+++ EY+  G+L  ++ G   + L   Q +  A  +A G+ ++      
Sbjct: 69  -LYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM--- 124
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 125 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 159

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 15  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 66
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
             +   S   I+++ EY+  G+L  ++ G   + L   Q +  A  +A G+ ++      
Sbjct: 67  -LYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM--- 122
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 123 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 157

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
             +   S   I+++ EY+  G+L  ++ G   + L   Q +  A  +A G+ ++      
Sbjct: 78  -LYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM--- 133
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 134 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV       E
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 250
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                     I+++ EY+  G+L  ++ G   + L   Q +  A  +A G+ ++      
Sbjct: 251 --------EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM--- 299
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 300 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 334

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV       E
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 250
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                     I+++ EY+  G+L  ++ G   + L   Q +  A  +A G+ ++      
Sbjct: 251 --------EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM--- 299
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 300 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 334

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV       E
Sbjct: 275 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 333
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                     I+++ EY+  G+L  ++ G   + L   Q +  A  +A G+ ++      
Sbjct: 334 --------EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM--- 382
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 383 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 417

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
             +   S   I+++ EY+  G L  ++ G   + L   Q +  A  +A G+ ++      
Sbjct: 78  -LYAVVSEEPIYIVTEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM--- 133
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 134 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV       E
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 250
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                     I+++ EY+  G+L  ++ G   + L   Q +  A  +A G+ ++      
Sbjct: 251 --------EPIYIVGEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM--- 299
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 300 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 334

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ K+RH  LV        
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKIRHEKLVQ------- 77
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
             +   S   I+++ EY+  G+L  ++ G   + L   Q +  A  +A G+ ++      
Sbjct: 78  -LYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM--- 133
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 134 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
             +   S   I+++ EY+  G+L  ++ G   + L   Q +  A  +A G+ ++      
Sbjct: 78  -LYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM--- 133
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L   +IL+ +NLV K++ + L  L E+ E
Sbjct: 134 NYVHRDLAAANILVGENLVCKVADFGLARLIEDNE 168

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 29/207 (14%)
Query: 4   GALGLPAYRTF-SLEELEEATN------------NFDTSAFMGEGSKGQMYRGRLK---- 46
           G L LP  RTF      E+ T             N      +G G  G++  GRLK    
Sbjct: 12  GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 47  NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
               +AI+ LK+  +   R +F+    ++ +  H +++   G         +    + ++
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 106 FEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL 165
            EY+ NG+L S++  H  Q  T  Q +    G+A G+++L      G    +L   +IL+
Sbjct: 125 TEYMENGSLDSFLRKHDAQ-FTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILI 180
Query: 166 DQNLVAKISSYNLPLLAENAEKVGHVT 192
           + NLV K+S + L  + E+  +  + T
Sbjct: 181 NSNLVCKVSDFGLARVLEDDPEAAYTT 207

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 16  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 67
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
             +   S   I ++ EY+  G+L  ++ G   + L   Q +  A  +A G+ ++      
Sbjct: 68  -LYAVVSEEPIXIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM--- 123
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 124 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 158

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 29/207 (14%)
Query: 4   GALGLPAYRTF-SLEELEEATN------------NFDTSAFMGEGSKGQMYRGRLK---- 46
           G L LP  RTF      E+ T             N      +G G  G++  GRLK    
Sbjct: 12  GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 47  NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
               +AI+ LK+  +   R +F+    ++ +  H +++   G         +    + ++
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 106 FEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL 165
            EY+ NG+L S++  H  Q  T  Q +    G+A G+++L      G    +L   +IL+
Sbjct: 125 TEYMENGSLDSFLRKHDAQ-FTVIQLVGMLRGIASGMKYLSDM---GFVHRDLAARNILI 180
Query: 166 DQNLVAKISSYNLPLLAENAEKVGHVT 192
           + NLV K+S + L  + E+  +  + T
Sbjct: 181 NSNLVCKVSDFGLSRVLEDDPEAAYTT 207

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV       E
Sbjct: 193 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGNMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 251
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                     I+++ EY+  G+L  ++ G   + L   Q +  A  +A G+ ++      
Sbjct: 252 --------EPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM--- 300
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 301 NYVHRDLRAANILVGENLVCKVADFGLGRLIEDNE 335

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 29/207 (14%)
Query: 4   GALGLPAYRTF-SLEELEEATN------------NFDTSAFMGEGSKGQMYRGRLK---- 46
           G L LP  RTF      E+ T             N      +G G  G++  GRLK    
Sbjct: 12  GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 47  NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
               +AI+ LK+  +   R +F+    ++ +  H +++   G         +    + ++
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 106 FEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL 165
            EY+ NG+L S++  H  Q  T  Q +    G+A G+++L      G    +L   +IL+
Sbjct: 125 TEYMENGSLDSFLRKHDAQ-FTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILI 180
Query: 166 DQNLVAKISSYNLPLLAENAEKVGHVT 192
           + NLV K+S + L  + E+  +  + T
Sbjct: 181 NSNLVCKVSDFGLSRVLEDDPEAAYTT 207

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 23  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 74
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
             +   S   I+++ EY+  G+L  ++ G   + L   Q +  +  +A G+ ++      
Sbjct: 75  -LYAVVSEEPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERM--- 130
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 131 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 165

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 23  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 74
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
             +   S   I+++ EY+  G+L  ++ G   + L   Q +  +  +A G+ ++      
Sbjct: 75  -LYAVVSEEPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERM--- 130
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 131 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 165

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 29/207 (14%)
Query: 4   GALGLPAYRTF-----------SLEEL--EEATNNFDTSAFMGEGSKGQMYRGRLK---- 46
           G L LP  RTF           ++ E   E    N      +G G  G++  GRLK    
Sbjct: 12  GHLKLPGLRTFVDPHTYEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 47  NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
               +AI+ LK+  +   R +F+    ++ +  H +++   G         +    + ++
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 106 FEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL 165
            EY+ NG+L S++  H  Q  T  Q +    G+A G+++L      G    +L   +IL+
Sbjct: 125 TEYMENGSLDSFLRKHDAQ-FTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILI 180
Query: 166 DQNLVAKISSYNLPLLAENAEKVGHVT 192
           + NLV K+S + L  + E+  +  + T
Sbjct: 181 NSNLVCKVSDFGLSRVLEDDPEAAYTT 207

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 29/207 (14%)
Query: 4   GALGLPAYRTF-SLEELEEATN------------NFDTSAFMGEGSKGQMYRGRLK---- 46
           G L LP  RTF      E+ T             N      +G G  G++  GRLK    
Sbjct: 12  GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 47  NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
               +AI+ LK+  +   R +F+    ++ +  H +++   G         +    + ++
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 106 FEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL 165
            EY+ NG+L S++  H  Q  T  Q +    G+A G+++L      G    +L   +IL+
Sbjct: 125 TEYMENGSLDSFLRKHDAQ-FTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILI 180
Query: 166 DQNLVAKISSYNLPLLAENAEKVGHVT 192
           + NLV K+S + L  + E+  +  + T
Sbjct: 181 NSNLVCKVSDFGLGRVLEDDPEAAYTT 207

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 29/207 (14%)
Query: 4   GALGLPAYRTF-SLEELEEATN------------NFDTSAFMGEGSKGQMYRGRLK---- 46
           G L LP  RT+      E+ T             N      +G G  G++  GRLK    
Sbjct: 12  GHLKLPGLRTYVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 47  NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
               +AI+ LK+  +   R +F+    ++ +  H +++   G         +    + ++
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 106 FEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL 165
            EY+ NG+L S++  H  Q  T  Q +    G+A G+++L      G    +L   +IL+
Sbjct: 125 TEYMENGSLDSFLRKHDAQ-FTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILI 180
Query: 166 DQNLVAKISSYNLPLLAENAEKVGHVT 192
           + NLV K+S + L  + E+  +  + T
Sbjct: 181 NSNLVCKVSDFGLSRVLEDDPEAAYTT 207

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 29/207 (14%)
Query: 4   GALGLPAYRTF-----------SLEEL--EEATNNFDTSAFMGEGSKGQMYRGRLK---- 46
           G L LP  RT+           ++ E   E    N      +G G  G++  GRLK    
Sbjct: 12  GHLKLPGLRTYVDPHTYEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 47  NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
               +AI+ LK+  +   R +F+    ++ +  H +++   G         +    + ++
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 106 FEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL 165
            EY+ NG+L S++  H  Q  T  Q +    G+A G+++L      G    +L   +IL+
Sbjct: 125 TEYMENGSLDSFLRKHDAQ-FTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILI 180
Query: 166 DQNLVAKISSYNLPLLAENAEKVGHVT 192
           + NLV K+S + L  + E+  +  + T
Sbjct: 181 NSNLVCKVSDFGLSRVLEDDPEAAYTT 207

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 29/207 (14%)
Query: 4   GALGLPAYRTF-----------SLEEL--EEATNNFDTSAFMGEGSKGQMYRGRLK---- 46
           G L LP  RT+           ++ E   E    N      +G G  G++  GRLK    
Sbjct: 10  GHLKLPGLRTYVDPHTYEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 69
Query: 47  NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
               +AI+ LK+  +   R +F+    ++ +  H +++   G         +    + ++
Sbjct: 70  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 122
Query: 106 FEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL 165
            EY+ NG+L S++  H  Q  T  Q +    G+A G+++L      G    +L   +IL+
Sbjct: 123 TEYMENGSLDSFLRKHDAQ-FTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILI 178
Query: 166 DQNLVAKISSYNLPLLAENAEKVGHVT 192
           + NLV K+S + L  + E+  +  + T
Sbjct: 179 NSNLVCKVSDFGLSRVLEDDPEAAYTT 205

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 29/207 (14%)
Query: 4   GALGLPAYRTF-SLEELEEATN------------NFDTSAFMGEGSKGQMYRGRLK---- 46
           G L LP  RTF      E+ T             N      +G G  G++  GRLK    
Sbjct: 12  GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 47  NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
               +AI+ LK+  +   R +F+    ++ +  H +++   G         +    + ++
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 106 FEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL 165
            E + NG+L S++  H  Q  T  Q +    G+A G+++L      G    +L   +IL+
Sbjct: 125 TEXMENGSLDSFLRKHDAQ-FTVIQLVGMLRGIASGMKYLSDM---GAVHRDLAARNILI 180
Query: 166 DQNLVAKISSYNLPLLAENAEKVGHVT 192
           + NLV K+S + L  + E+  +  + T
Sbjct: 181 NSNLVCKVSDFGLSRVLEDDPEAAYTT 207

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 16/178 (8%)
Query: 20  EEATNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTR-NFMHHIELI 74
           E    N      +G G  G++  GRLK        +AI+ LK+  +   R +F+    ++
Sbjct: 29  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 88
Query: 75  SKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISA 134
            +  H +++   G         +    + ++ EY+ NG+L S++  H  Q  T  Q +  
Sbjct: 89  GQFDHPNIIRLEGVV-------TKSKPVMIVTEYMENGSLDSFLRKHDAQ-FTVIQLVGM 140
Query: 135 AIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 192
             G+A G+++L      G    +L   +IL++ NLV K+S + L  + E+  +  + T
Sbjct: 141 LRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 195

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 16/178 (8%)
Query: 20  EEATNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTR-NFMHHIELI 74
           E    N      +G G  G++  GRLK        +AI+ LK+  +   R +F+    ++
Sbjct: 12  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 71
Query: 75  SKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISA 134
            +  H +++   G         +    + ++ EY+ NG+L S++  H  Q  T  Q +  
Sbjct: 72  GQFDHPNIIRLEGVV-------TKSKPVMIVTEYMENGSLDSFLRKHDAQ-FTVIQLVGM 123
Query: 135 AIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 192
             G+A G+++L      G    +L   +IL++ NLV K+S + L  + E+  +  + T
Sbjct: 124 LRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 178

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 76/150 (50%), Gaps = 12/150 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTR--NFMHHIELISKLRHCHLVSALGHC 89
           +G GS G ++R    +G+ +A++ L  +  H+ R   F+  + ++ +LRH ++V  +G  
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 90  FECYFDDSSVSRIFLIFEYVPNGTL-RSWISGHAWQSLTWTQRISAAIGVARGIQFLHTG 148
                  +    + ++ EY+  G+L R      A + L   +R+S A  VA+G+ +LH  
Sbjct: 104 -------TQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR 156
Query: 149 IVPGVFSNNLKITDILLDQNLVAKISSYNL 178
             P +   NLK  ++L+D+    K+  + L
Sbjct: 157 -NPPIVHRNLKSPNLLVDKKYTVKVCDFGL 185

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 76/150 (50%), Gaps = 12/150 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTR--NFMHHIELISKLRHCHLVSALGHC 89
           +G GS G ++R    +G+ +A++ L  +  H+ R   F+  + ++ +LRH ++V  +G  
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 90  FECYFDDSSVSRIFLIFEYVPNGTL-RSWISGHAWQSLTWTQRISAAIGVARGIQFLHTG 148
                  +    + ++ EY+  G+L R      A + L   +R+S A  VA+G+ +LH  
Sbjct: 104 -------TQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR 156
Query: 149 IVPGVFSNNLKITDILLDQNLVAKISSYNL 178
             P +   +LK  ++L+D+    K+  + L
Sbjct: 157 -NPPIVHRDLKSPNLLVDKKYTVKVCDFGL 185

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 29/207 (14%)
Query: 4   GALGLPAYRTF-----------SLEEL--EEATNNFDTSAFMGEGSKGQMYRGRLK---- 46
           G L LP  RT+           ++ E   E    N      +G G  G++  GRLK    
Sbjct: 12  GHLKLPGLRTYVDPHTYEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 47  NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
               +AI+ LK+  +   R +F+    ++ +  H +++   G         +    + ++
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 106 FEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL 165
            E + NG+L S++  H  Q  T  Q +    G+A G+++L      G    +L   +IL+
Sbjct: 125 TEXMENGSLDSFLRKHDAQ-FTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILI 180
Query: 166 DQNLVAKISSYNLPLLAENAEKVGHVT 192
           + NLV K+S + L  + E+  +  + T
Sbjct: 181 NSNLVCKVSDFGLSRVLEDDPEAAYTT 207

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +A++ LK + S S   F+    L+ +L+H  LV        
Sbjct: 21  LGAGQAGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 77
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                 +   I++I EY+ NG+L  ++   +   LT  + +  A  +A G+ F+      
Sbjct: 78  ------TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER--- 128
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+   L  KI+ + L  L E+AE
Sbjct: 129 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDAE 163

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 12/133 (9%)
Query: 47  NGTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
            G  +A++ LK       R+ +   I+++  L H H++   G C     +D+  + + L+
Sbjct: 59  TGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCC-----EDAGAASLQLV 113
Query: 106 FEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL 165
            EYVP G+LR ++  H   S+   Q +  A  +  G+ +LH          +L   ++LL
Sbjct: 114 MEYVPLGSLRDYLPRH---SIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLL 167
Query: 166 DQNLVAKISSYNL 178
           D + + KI  + L
Sbjct: 168 DNDRLVKIGDFGL 180

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST----RNFMHHIELISKL-R 78
           N+      +GEG+ GQ+ + R+K         +K  K +++    R+F   +E++ KL  
Sbjct: 22  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 81
Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW--------------ISGHAWQ 124
           H ++++ LG C            ++L  EY P+G L  +              I+     
Sbjct: 82  HPNIINLLGAC-------EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAS 134
Query: 125 SLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           +L+  Q +  A  VARG+ +L           NL   +IL+ +N VAKI+ + L
Sbjct: 135 TLSSQQLLHFAADVARGMDYLSQ---KQFIHRNLAARNILVGENYVAKIADFGL 185

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 19/153 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R KN  FI A++ L   +++K+         +E+ S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF DS  +R++LI EY P GT    L+        ++ T+   ++
Sbjct: 66  RHPNILRLYG-----YFHDS--TRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITD 162
            A+      + +H  I P       +  LKI D
Sbjct: 119 NALSYCHSKKVIHRDIKPENLLLGSAGELKIAD 151

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +A++ LK + S S   F+    L+ +L+H  LV        
Sbjct: 17  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 73
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                 +   I++I EY+ NG+L  ++   +   LT  + +  A  +A G+ F+      
Sbjct: 74  ------TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER--- 124
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                NL+  +IL+   L  KI+ + L  L E+ E
Sbjct: 125 NYIHRNLRAANILVSDTLSCKIADFGLARLIEDNE 159

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 47  NGTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
            G  +A++ LK       R+ +   I+++  L H H++   G C     +D     + L+
Sbjct: 42  TGEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKYKGCC-----EDQGEKSLQLV 96
Query: 106 FEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL 165
            EYVP G+LR ++  H   S+   Q +  A  +  G+ +LH+         NL   ++LL
Sbjct: 97  MEYVPLGSLRDYLPRH---SIGLAQLLLFAQQICEGMAYLHSQ---HYIHRNLAARNVLL 150
Query: 166 DQNLVAKISSYNL 178
           D + + KI  + L
Sbjct: 151 DNDRLVKIGDFGL 163

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 16/178 (8%)
Query: 20  EEATNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTR-NFMHHIELI 74
           E    N      +G G  G++  GRLK        +AI+ LK+  +   R +F+    ++
Sbjct: 12  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 71
Query: 75  SKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISA 134
            +  H +++   G         +    + ++ E + NG+L S++  H  Q  T  Q +  
Sbjct: 72  GQFDHPNIIRLEGVV-------TKSKPVMIVTEXMENGSLDSFLRKHDAQ-FTVIQLVGM 123
Query: 135 AIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 192
             G+A G+++L      G    +L   +IL++ NLV K+S + L  + E+  +  + T
Sbjct: 124 LRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 178

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 47  NGTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
            G  +A++ LK       R+ +   I+++  L H H++   G C     +D     + L+
Sbjct: 42  TGEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKYKGCC-----EDQGEKSLQLV 96
Query: 106 FEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL 165
            EYVP G+LR ++  H   S+   Q +  A  +  G+ +LH          NL   ++LL
Sbjct: 97  MEYVPLGSLRDYLPRH---SIGLAQLLLFAQQICEGMAYLHAQ---HYIHRNLAARNVLL 150
Query: 166 DQNLVAKISSYNL 178
           D + + KI  + L
Sbjct: 151 DNDRLVKIGDFGL 163

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST----RNFMHHIELISKL-R 78
           N+      +GEG+ GQ+ + R+K         +K  K +++    R+F   +E++ KL  
Sbjct: 25  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 84
Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW--------------ISGHAWQ 124
           H ++++ LG C            ++L  EY P+G L  +              I+     
Sbjct: 85  HPNIINLLGAC-------EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAS 137
Query: 125 SLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           +L+  Q +  A  VARG+ +L           +L   +IL+ +N VAKI+ + L
Sbjct: 138 TLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGL 188

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST----RNFMHHIELISKL-R 78
           N+      +GEG+ GQ+ + R+K         +K  K +++    R+F   +E++ KL  
Sbjct: 15  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 74
Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW--------------ISGHAWQ 124
           H ++++ LG C            ++L  EY P+G L  +              I+     
Sbjct: 75  HPNIINLLGAC-------EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAS 127
Query: 125 SLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           +L+  Q +  A  VARG+ +L           +L   +IL+ +N VAKI+ + L
Sbjct: 128 TLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGL 178

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 19/152 (12%)
Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKLRH 79
           ++FD    +G+G  G +Y  R K   FI A++ L   +++K          IE+ S LRH
Sbjct: 15  DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 74
Query: 80  CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA----WQSLTWTQRISAA 135
            +++         YF D    RI+L+ E+ P G L   +  H      +S T+ + ++ A
Sbjct: 75  PNILRMYN-----YFHDR--KRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADA 127
Query: 136 IGVARGIQFLHTGIVPGV----FSNNLKITDI 163
           +      + +H  I P      +   LKI D 
Sbjct: 128 LHYCHERKVIHRDIKPENLLMGYKGELKIADF 159

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +A++ LK + S S   F+    L+ +L+H  LV        
Sbjct: 16  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 72
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                 +   I++I EY+ NG+L  ++   +   LT  + +  A  +A G+ F+      
Sbjct: 73  ------TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER--- 123
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+   L  KI+ + L  L E+ E
Sbjct: 124 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 158

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +AI+ LK   + S  +F+   +++ KL+H  LV       E
Sbjct: 17  LGNGQFGEVWMGTWNGNTKVAIKTLK-PGTMSPESFLEEAQIMKKLKHDKLVQLYAVVSE 75
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                     I+++ EY+  G+L  ++     ++L     +  A  VA G+ ++      
Sbjct: 76  --------EPIYIVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERM--- 124
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+   L+ KI+ + L  L E+ E
Sbjct: 125 NYIHRDLRSANILVGNGLICKIADFGLARLIEDNE 159

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 22/170 (12%)
Query: 31  FMGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSA 85
            +G G  G++  GRL+        +AI+ LK   +    R+F+    ++ +  H +++  
Sbjct: 56  IIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRL 115
Query: 86  LGHCFECYFDDSSVSR---IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGI 142
            G           V+R     ++ EY+ NG+L +++  H  Q  T  Q +    GV  G+
Sbjct: 116 EG----------VVTRGRLAMIVTEYMENGSLDTFLRTHDGQ-FTIMQLVGMLRGVGAGM 164
Query: 143 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 192
           ++L      G    +L   ++L+D NLV K+S + L  + E+     + T
Sbjct: 165 RYLSD---LGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTT 211

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 10/152 (6%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 42  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 96
Query: 108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ 167
           Y+P G+LR ++  HA + +   + +     + +G+++L T         +L   +IL++ 
Sbjct: 97  YLPYGSLRDYLQAHA-ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVEN 152
Query: 168 NLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 198
               KI  + L  +L ++ E      P    I
Sbjct: 153 ENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 184

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 19/152 (12%)
Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKLRH 79
           ++FD    +G+G  G +Y  R K   FI A++ L   +++K          IE+ S LRH
Sbjct: 14  DDFDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 73
Query: 80  CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA----WQSLTWTQRISAA 135
            +++         YF D    RI+L+ E+ P G L   +  H      +S T+ + ++ A
Sbjct: 74  PNILRMYN-----YFHDR--KRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADA 126
Query: 136 IGVARGIQFLHTGIVPGV----FSNNLKITDI 163
           +      + +H  I P      +   LKI D 
Sbjct: 127 LHYCHERKVIHRDIKPENLLMGYKGELKIADF 158

>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Mgatp) Length = 271

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 9/149 (6%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHC 89
           + E   G++++GR + G  I ++ LK++   +  +R+F      +    H +++  LG C
Sbjct: 18  LNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGAC 76
Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGI 149
                         LI  ++P G+L + +       +  +Q +  A+ +ARG+ FLHT +
Sbjct: 77  -----QSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHT-L 130
Query: 150 VPGVFSNNLKITDILLDQNLVAKISSYNL 178
            P +  + L    +++D+++ A+IS  ++
Sbjct: 131 EPLIPRHALNSRSVMIDEDMTARISMADV 159

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +A++ LK + S S   F+    L+ +L+H  LV        
Sbjct: 30  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 86
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                 +   I++I EY+ NG+L  ++   +   LT  + +  A  +A G+ F+      
Sbjct: 87  ------TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER--- 137
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+   L  KI+ + L  L E+ E
Sbjct: 138 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 172

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +A++ LK + S S   F+    L+ +L+H  LV        
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 77
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                 +   I++I EY+ NG+L  ++   +   LT  + +  A  +A G+ F+      
Sbjct: 78  ------TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER--- 128
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+   L  KI+ + L  L E+ E
Sbjct: 129 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 163

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +A++ LK + S S   F+    L+ +L+H  LV        
Sbjct: 26  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 82
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                 +   I++I EY+ NG+L  ++   +   LT  + +  A  +A G+ F+      
Sbjct: 83  ------TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER--- 133
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+   L  KI+ + L  L E+ E
Sbjct: 134 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 168

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +A++ LK + S S   F+    L+ +L+H  LV        
Sbjct: 27  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 83
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                 +   I++I EY+ NG+L  ++   +   LT  + +  A  +A G+ F+      
Sbjct: 84  ------TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER--- 134
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+   L  KI+ + L  L E+ E
Sbjct: 135 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 169

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +A++ LK + S S   F+    L+ +L+H  LV        
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 77
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                 +   I++I EY+ NG+L  ++   +   LT  + +  A  +A G+ F+      
Sbjct: 78  ------TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER--- 128
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+   L  KI+ + L  L E+ E
Sbjct: 129 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 163

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +A++ LK + S S   F+    L+ +L+H  LV        
Sbjct: 27  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 83
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                 +   I++I EY+ NG+L  ++   +   LT  + +  A  +A G+ F+      
Sbjct: 84  ------TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER--- 134
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+   L  KI+ + L  L E+ E
Sbjct: 135 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 169

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +A++ LK + S S   F+    L+ +L+H  LV        
Sbjct: 31  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 87
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                 +   I++I EY+ NG+L  ++   +   LT  + +  A  +A G+ F+      
Sbjct: 88  ------TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER--- 138
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+   L  KI+ + L  L E+ E
Sbjct: 139 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 173

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +A++ LK + S S   F+    L+ +L+H  LV        
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 77
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                 +   I++I EY+ NG+L  ++   +   LT  + +  A  +A G+ F+      
Sbjct: 78  ------TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER--- 128
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+   L  KI+ + L  L E+ E
Sbjct: 129 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 163

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +A++ LK + S S   F+    L+ +L+H  LV        
Sbjct: 23  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 79
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                 +   I++I EY+ NG+L  ++   +   LT  + +  A  +A G+ F+      
Sbjct: 80  ------TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER--- 130
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+   L  KI+ + L  L E+ E
Sbjct: 131 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 165

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +A++ LK + S S   F+    L+ +L+H  LV        
Sbjct: 22  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 78
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                 +   I++I EY+ NG+L  ++   +   LT  + +  A  +A G+ F+      
Sbjct: 79  ------TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER--- 129
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+   L  KI+ + L  L E+ E
Sbjct: 130 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 164

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +A++ LK + S S   F+    L+ +L+H  LV        
Sbjct: 29  LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 85
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                 +   I++I EY+ NG+L  ++   +   LT  + +  A  +A G+ F+      
Sbjct: 86  ------TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER--- 136
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  +IL+   L  KI+ + L  L E+ E
Sbjct: 137 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 171

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 92  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 144
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 163
            A+      + +H  I P       +  LKI D 
Sbjct: 145 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 178

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 74/164 (45%), Gaps = 27/164 (16%)
Query: 32  MGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSA 85
           +GEG+ G+++     N         +A++ LK    ++ ++F    EL++ L+H H+V  
Sbjct: 21  LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKF 80
Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQS-----------LTWTQRISA 134
            G C E          + ++FEY+ +G L  ++  H   +           LT +Q +  
Sbjct: 81  YGVCVEG-------DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHI 133
Query: 135 AIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           A  +A G+ +L +         +L   + L+ +NL+ KI  + +
Sbjct: 134 AQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKIGDFGM 174

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 22/169 (13%)
Query: 32  MGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           +G G  G++  GRLK        +AI+ LK+  +   R +F+    ++ +  H ++V   
Sbjct: 51  IGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHLE 110
Query: 87  GHCFECYFDDSSVSR---IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQ 143
           G           V+R   + ++ E++ NG L +++  H  Q  T  Q +    G+A G++
Sbjct: 111 G----------VVTRGKPVMIVIEFMENGALDAFLRKHDGQ-FTVIQLVGMLRGIAAGMR 159
Query: 144 FLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 192
           +L      G    +L   +IL++ NLV K+S + L  + E+  +  + T
Sbjct: 160 YLADM---GYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTT 205

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 92  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 144
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 163
            A+      + +H  I P       +  LKI D 
Sbjct: 145 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 178

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 23  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 82
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 83  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 135
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 163
            A+      + +H  I P       +  LKI D 
Sbjct: 136 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 169

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 12/160 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G +  G+ K    +A++ +K + S S   F    + + KL H  LV   G C +
Sbjct: 16  LGSGQFGVVKLGKWKGQYDVAVKMIK-EGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSK 74
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
            Y        I+++ EY+ NG L +++  H  + L  +Q +     V  G+ FL +    
Sbjct: 75  EY-------PIYIVTEYISNGCLLNYLRSHG-KGLEPSQLLEMCYDVCEGMAFLESH--- 123
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV 191
                +L   + L+D++L  K+S + +     + + V  V
Sbjct: 124 QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSV 163

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 40  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 94
Query: 108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ 167
           Y+P G+LR ++  H  + +   + +     + +G+++L T         NL   +IL++ 
Sbjct: 95  YLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRNLATRNILVEN 150
Query: 168 NLVAKISSYNL-PLLAENAE 186
               KI  + L  +L ++ E
Sbjct: 151 ENRVKIGDFGLTKVLPQDKE 170

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 66  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITD 162
            A+      + +H  I P       +  LKI D
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIAD 151

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 47  NGTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
            G  +A++ LK       R+ +   IE++  L H H+V   G C     +D     + L+
Sbjct: 36  TGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKYKGCC-----EDQGEKSVQLV 90
Query: 106 FEYVPNGTLRSWISGHA---WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITD 162
            EYVP G+LR ++  H     Q L + Q+I   +       ++H           L   +
Sbjct: 91  MEYVPLGSLRDYLPRHCVGLAQLLLFAQQICEGMAYLHAQHYIHRA---------LAARN 141
Query: 163 ILLDQNLVAKISSYNL 178
           +LLD + + KI  + L
Sbjct: 142 VLLDNDRLVKIGDFGL 157

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 47  NGTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
            G  +A++ LK       R+ +   IE++  L H H+V   G C     +D     + L+
Sbjct: 37  TGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKYKGCC-----EDQGEKSVQLV 91
Query: 106 FEYVPNGTLRSWISGHA---WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITD 162
            EYVP G+LR ++  H     Q L + Q+I   +       ++H           L   +
Sbjct: 92  MEYVPLGSLRDYLPRHCVGLAQLLLFAQQICEGMAYLHAQHYIHRA---------LAARN 142
Query: 163 ILLDQNLVAKISSYNL 178
           +LLD + + KI  + L
Sbjct: 143 VLLDNDRLVKIGDFGL 158

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 71  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 123
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 163
            A+      + +H  I P       +  LKI D 
Sbjct: 124 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 157

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 16/167 (9%)
Query: 31  FMGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSA 85
            +G G  G++  GRL+        +AI+ LK   +    R+F+    ++ +  H +++  
Sbjct: 56  IIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRL 115
Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFL 145
            G                ++ EY+ NG+L +++  H  Q  T  Q +    GV  G+++L
Sbjct: 116 EGVVTRGRL-------AMIVTEYMENGSLDTFLRTHDGQ-FTIMQLVGMLRGVGAGMRYL 167
Query: 146 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 192
                 G    +L   ++L+D NLV K+S + L  + E+       T
Sbjct: 168 SD---LGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAXTT 211

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 66  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITD 162
            A+      + +H  I P       +  LKI D
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIAD 151

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 71  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 123
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 163
            A+      + +H  I P       +  LKI D 
Sbjct: 124 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 157

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 67  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 119
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 163
            A+      + +H  I P       +  LKI D 
Sbjct: 120 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 153

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 66  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 163
            A+      + +H  I P       +  LKI D 
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 152

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 67  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 119
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 163
            A+      + +H  I P       +  LKI D 
Sbjct: 120 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 153

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 69  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 121
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITD 162
            A+      + +H  I P       +  LKI D
Sbjct: 122 NALSYCHSKRVIHRDIKPENLLLGSAGELKIAD 154

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 69  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 121
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 163
            A+      + +H  I P       +  LKI D 
Sbjct: 122 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 155

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 69  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 121
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 163
            A+      + +H  I P       +  LKI D 
Sbjct: 122 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 155

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 68  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 120
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 163
            A+      + +H  I P       +  LKI D 
Sbjct: 121 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 154

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 66  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 163
            A+      + +H  I P       +  LKI D 
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 152

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 69  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 121
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITD 162
            A+      + +H  I P       +  LKI D
Sbjct: 122 NALSYCHSKRVIHRDIKPENLLLGSAGELKIAD 154

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 66  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 163
            A+      + +H  I P       +  LKI D 
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 152

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 71  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 123
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 163
            A+      + +H  I P       +  LKI D 
Sbjct: 124 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 157

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 5   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 64
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 65  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 117
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITD 162
            A+      + +H  I P       +  LKI D
Sbjct: 118 NALSYCHSKRVIHRDIKPENLLLGSAGELKIAD 150

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 66  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITD 162
            A+      + +H  I P       +  LKI D
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIAD 151

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 10  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 69
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 70  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 122
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITD 162
            A+      + +H  I P       +  LKI D
Sbjct: 123 NALSYCHSKRVIHRDIKPENLLLGSAGELKIAD 155

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 67  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 119
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 163
            A+      + +H  I P       +  LKI D 
Sbjct: 120 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 153

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 69  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 121
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITD 162
            A+      + +H  I P       +  LKI D
Sbjct: 122 NALSYCHSKRVIHRDIKPENLLLGSAGELKIAD 154

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 66  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITD 162
            A+      + +H  I P       +  LKI D
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIAD 151

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNG----TLRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P G     L+        ++ T+   ++
Sbjct: 71  RHPNILRLYG-----YFHDAT--RVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELA 123
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 163
            A+      + +H  I P       +  LKI D 
Sbjct: 124 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 157

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNG----TLRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P G     L+        ++ T+   ++
Sbjct: 71  RHPNILRLYG-----YFHDAT--RVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELA 123
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 163
            A+      + +H  I P       +  LKI D 
Sbjct: 124 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 157

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 68  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 120
Query: 134 AAIGVARGIQFLHTGIVP 151
            A+      + +H  I P
Sbjct: 121 NALSYCHSKRVIHRDIKP 138

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 79/166 (47%), Gaps = 16/166 (9%)
Query: 32  MGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           +G G  G++  GRLK        +AI+ LK+  +   R +F+    ++ +  H +++   
Sbjct: 30  IGAGEFGEVCSGRLKLPGKRELPVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIHLE 89
Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
           G         +    + ++ EY+ NG+L +++  +  Q  T  Q +    G++ G+++L 
Sbjct: 90  GVV-------TKSKPVMIVTEYMENGSLDTFLKKNDGQ-FTVIQLVGMLRGISAGMKYLS 141
Query: 147 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 192
                G    +L   +IL++ NLV K+S + L  + E+  +  + T
Sbjct: 142 DM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 184

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 69  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 121
Query: 134 AAIGVARGIQFLHTGIVP 151
            A+      + +H  I P
Sbjct: 122 NALSYCHSKRVIHRDIKP 139

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 3   ALEDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 62
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LRSWISGHAWQSLTWTQRIS 133
           RH +++   G     YF D++  R++LI EY P GT    L+        ++ T+   ++
Sbjct: 63  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 115
Query: 134 AAIGVARGIQFLHTGIVPGVF----SNNLKITD 162
            A+      + +H  I P       +  LKI D
Sbjct: 116 NALSYCHSKRVIHRDIKPENLLLGSAGELKIAD 148

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 43  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 97
Query: 108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ 167
           Y+P G+LR ++  H  + +   + +     + +G+++L T         +L   +IL++ 
Sbjct: 98  YLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVEN 153
Query: 168 NLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 198
               KI  + L  +L ++ E      P    I
Sbjct: 154 ENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 185

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 42  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 96
Query: 108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ 167
           Y+P G+LR ++  H  + +   + +     + +G+++L T         +L   +IL++ 
Sbjct: 97  YLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVEN 152
Query: 168 NLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 198
               KI  + L  +L ++ E      P    I
Sbjct: 153 ENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 184

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 25/193 (12%)
Query: 14  FSLEELEEATNNF----DTSAF-----MGEGSKGQMYRGRLK----NGTFIAIRCLKMKK 60
           F+ E+  +A   F    D S       +G G  G++  GRLK        +AI+ LK   
Sbjct: 10  FTFEDPNQAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGY 69
Query: 61  SHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS 119
           +   R +F+    ++ +  H +++   G   +C         + +I EY+ NG+L +++ 
Sbjct: 70  TDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKC-------KPVMIITEYMENGSLDAFLR 122
Query: 120 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 179
            +  +  T  Q +    G+  G+++L           +L   +IL++ NLV K+S + + 
Sbjct: 123 KNDGR-FTVIQLVGMLRGIGSGMKYLSDM---SAVHRDLAARNILVNSNLVCKVSDFGMS 178
Query: 180 LLAENAEKVGHVT 192
            + E+  +  + T
Sbjct: 179 RVLEDDPEAAYTT 191

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 44  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 98
Query: 108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ 167
           Y+P G+LR ++  H  + +   + +     + +G+++L T         +L   +IL++ 
Sbjct: 99  YLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVEN 154
Query: 168 NLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 198
               KI  + L  +L ++ E      P    I
Sbjct: 155 ENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 186

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 46  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 100
Query: 108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ 167
           Y+P G+LR ++  H  + +   + +     + +G+++L T         +L   +IL++ 
Sbjct: 101 YLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVEN 156
Query: 168 NLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 198
               KI  + L  +L ++ E      P    I
Sbjct: 157 ENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 188

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 45  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 99
Query: 108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ 167
           Y+P G+LR ++  H  + +   + +     + +G+++L T         +L   +IL++ 
Sbjct: 100 YLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVEN 155
Query: 168 NLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 198
               KI  + L  +L ++ E      P    I
Sbjct: 156 ENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 187

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 39  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 93
Query: 108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ 167
           Y+P G+LR ++  H  + +   + +     + +G+++L T         +L   +IL++ 
Sbjct: 94  YLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVEN 149
Query: 168 NLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 198
               KI  + L  +L ++ E      P    I
Sbjct: 150 ENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 181

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 70  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 124
Query: 108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ 167
           Y+P G+LR ++  H  + +   + +     + +G+++L T         +L   +IL++ 
Sbjct: 125 YLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVEN 180
Query: 168 NLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 198
               KI  + L  +L ++ E      P    I
Sbjct: 181 ENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 212

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 38  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 92
Query: 108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ 167
           Y+P G+LR ++  H  + +   + +     + +G+++L T         +L   +IL++ 
Sbjct: 93  YLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVEN 148
Query: 168 NLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 198
               KI  + L  +L ++ E      P    I
Sbjct: 149 ENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 180

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 37  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 91
Query: 108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ 167
           Y+P G+LR ++  H  + +   + +     + +G+++L T         +L   +IL++ 
Sbjct: 92  YLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVEN 147
Query: 168 NLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 198
               KI  + L  +L ++ E      P    I
Sbjct: 148 ENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 179

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 39  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 93
Query: 108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ 167
           Y+P G+LR ++  H  + +   + +     + +G+++L T         +L   +IL++ 
Sbjct: 94  YLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVEN 149
Query: 168 NLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 198
               KI  + L  +L ++ E      P    I
Sbjct: 150 ENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 181

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 91/192 (47%), Gaps = 31/192 (16%)
Query: 4   GALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMK 59
           G LG  + R ++LE       +FD    +G+G  G +Y  R +   FI A++ L   +++
Sbjct: 1   GPLG--SKRQWTLE-------DFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLE 51
Query: 60  KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS 119
           K+         +E+ S LRH +++   G     YF D++  R++LI EY P GT+   + 
Sbjct: 52  KAGVEHQLRREVEIQSHLRHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYREL- 103
Query: 120 GHAWQSLTW--TQRISAAIG-VARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 176
               Q L+    QR +  I  +A  + + H+     V   ++K  ++LL  N   KI+ +
Sbjct: 104 ----QKLSRFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSNGELKIADF 156
Query: 177 NLPLLAENAEKV 188
              + A ++ + 
Sbjct: 157 GWSVHAPSSRRT 168

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 57  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 111
Query: 108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ 167
           Y+P G+LR ++  H  + +   + +     + +G+++L T         +L   +IL++ 
Sbjct: 112 YLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVEN 167
Query: 168 NLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 198
               KI  + L  +L ++ E      P    I
Sbjct: 168 ENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 199

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 57  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 111
Query: 108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ 167
           Y+P G+LR ++  H  + +   + +     + +G+++L T         +L   +IL++ 
Sbjct: 112 YLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVEN 167
Query: 168 NLVAKISSYNL-PLLAENAE 186
               KI  + L  +L ++ E
Sbjct: 168 ENRVKIGDFGLTKVLPQDKE 187

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 39  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 93
Query: 108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ 167
           Y+P G+LR ++  H  + +   + +     + +G+++L T         +L   +IL++ 
Sbjct: 94  YLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVEN 149
Query: 168 NLVAKISSYNL-PLLAENAE 186
               KI  + L  +L ++ E
Sbjct: 150 ENRVKIGDFGLTKVLPQDKE 169

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 28/171 (16%)
Query: 4   GALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMK 59
           G LG  + R ++LE       +FD    +G+G  G +Y  R +   FI A++ L   +++
Sbjct: 1   GPLG--SKRQWTLE-------DFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLE 51
Query: 60  KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT----LR 115
           K+         +E+ S LRH +++   G     YF D++  R++LI EY P GT    L+
Sbjct: 52  KAGVEHQLRREVEIQSHLRHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQ 104
Query: 116 SWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVF----SNNLKITD 162
                   ++ T+   ++ A+      + +H  I P       +  LKI D
Sbjct: 105 KLSRFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSNGELKIAD 155

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 72/155 (46%), Gaps = 11/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G   N T +A++ LK   + S + F+    L+  L+H  LV        
Sbjct: 21  LGAGQFGEVWMGYYNNSTKVAVKTLK-PGTMSVQAFLEEANLMKTLQHDKLV-------R 72
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
            Y   +    I++I EY+  G+L  ++       +   + I  +  +A G+ ++      
Sbjct: 73  LYAVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERK--- 129
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  ++L+ ++L+ KI+ + L  + E+ E
Sbjct: 130 NYIHRDLRAANVLVSESLMCKIADFGLARVIEDNE 164

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 25/185 (13%)
Query: 14  FSLEELEEATNNF----DTSAF-----MGEGSKGQMYRGRLK----NGTFIAIRCLKMKK 60
           F+ E+  EA   F    D S       +G G  G++  G LK       F+AI+ LK   
Sbjct: 14  FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 73
Query: 61  SHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS 119
           +   R +F+    ++ +  H +++   G         +  + + +I E++ NG+L S++ 
Sbjct: 74  TEKQRRDFLSEASIMGQFDHPNVIHLEGVV-------TKSTPVMIITEFMENGSLDSFLR 126
Query: 120 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 179
            +  Q  T  Q +    G+A G+++L           +L   +IL++ NLV K+S + L 
Sbjct: 127 QNDGQ-FTVIQLVGMLRGIAAGMKYLADM---NYVHRDLAARNILVNSNLVCKVSDFGLS 182
Query: 180 LLAEN 184
              E+
Sbjct: 183 RFLED 187

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 32  MGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSA 85
           +GEG+ G+++     N         +A++ LK     + ++F    EL++ L+H H+V  
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 108
Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA-------------------WQSL 126
            G C E          + ++FEY+ +G L  ++  H                     Q L
Sbjct: 109 FGVCTEG-------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLL 161
Query: 127 TWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
               +++A +    G+ F+H          +L   + L+ Q LV KI  + +
Sbjct: 162 AVASQVAAGMVYLAGLHFVH---------RDLATRNCLVGQGLVVKIGDFGM 204

>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Apo) Length = 271

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 9/149 (6%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHC 89
           + E   G++++GR + G  I ++ LK++   +  +R+F      +    H +++  LG C
Sbjct: 18  LNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGAC 76
Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGI 149
                         LI  + P G+L + +       +  +Q +  A+  ARG  FLHT +
Sbjct: 77  -----QSPPAPHPTLITHWXPYGSLYNVLHEGTNFVVDQSQAVKFALDXARGXAFLHT-L 130
Query: 150 VPGVFSNNLKITDILLDQNLVAKISSYNL 178
            P +  + L    + +D++  A+IS  ++
Sbjct: 131 EPLIPRHALNSRSVXIDEDXTARISXADV 159

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 42  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 96
Query: 108 YVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ 167
           ++P G+LR ++  H  + +   + +     + +G+++L T         +L   +IL++ 
Sbjct: 97  FLPYGSLREYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVEN 152
Query: 168 NLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 198
               KI  + L  +L ++ E      P    I
Sbjct: 153 ENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 184

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 72/155 (46%), Gaps = 11/155 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G   N T +A++ LK   + S + F+    L+  L+H  LV        
Sbjct: 20  LGAGQFGEVWMGYYNNSTKVAVKTLK-PGTMSVQAFLEEANLMKTLQHDKLV-------R 71
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
            Y   +    I++I E++  G+L  ++       +   + I  +  +A G+ ++      
Sbjct: 72  LYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERK--- 128
Query: 152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                +L+  ++L+ ++L+ KI+ + L  + E+ E
Sbjct: 129 NYIHRDLRAANVLVSESLMCKIADFGLARVIEDNE 163

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 32  MGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSA 85
           +GEG+ G+++     N         +A++ LK     + ++F    EL++ L+H H+V  
Sbjct: 20  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 79
Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA-------------------WQSL 126
            G C E          + ++FEY+ +G L  ++  H                     Q L
Sbjct: 80  FGVCTEG-------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLL 132
Query: 127 TWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
               +++A +    G+ F+H          +L   + L+ Q LV KI  + +
Sbjct: 133 AVASQVAAGMVYLAGLHFVH---------RDLATRNCLVGQGLVVKIGDFGM 175

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 32  MGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSA 85
           +GEG+ G+++     N         +A++ LK     + ++F    EL++ L+H H+V  
Sbjct: 26  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 85
Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA-------------------WQSL 126
            G C E          + ++FEY+ +G L  ++  H                     Q L
Sbjct: 86  FGVCTEG-------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLL 138
Query: 127 TWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
               +++A +    G+ F+H          +L   + L+ Q LV KI  + +
Sbjct: 139 AVASQVAAGMVYLAGLHFVH---------RDLATRNCLVGQGLVVKIGDFGM 181

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 84/193 (43%), Gaps = 22/193 (11%)
Query: 17  EELEEATNNFDTS-----AFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSH-STRN 66
           E + E     D S       +G G  G++ RGRLK      + +AI+ LK   +    R 
Sbjct: 4   EAVREFAKEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRRE 63
Query: 67  FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSL 126
           F+    ++ +  H +++   G         ++   + ++ E++ NG L S++  +  Q  
Sbjct: 64  FLSEASIMGQFEHPNIIRLEGVV-------TNSMPVMILTEFMENGALDSFLRLNDGQ-F 115
Query: 127 TWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP-LLAENA 185
           T  Q +    G+A G+++L           +L   +IL++ NLV K+S + L   L EN+
Sbjct: 116 TVIQLVGMLRGIASGMRYLAEM---SYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENS 172
Query: 186 EKVGHVTPYSGSI 198
                 +   G I
Sbjct: 173 SDPTETSSLGGKI 185

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 32  MGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSAL 86
           +G G  G++ RGRLK      + +AI+ LK   +    R F+    ++ +  H +++   
Sbjct: 22  IGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLE 81
Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
           G         ++   + ++ E++ NG L S++  +  Q  T  Q +    G+A G+++L 
Sbjct: 82  GVV-------TNSMPVMILTEFMENGALDSFLRLNDGQ-FTVIQLVGMLRGIASGMRYLA 133
Query: 147 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLP-LLAENAEKVGHVTPYSGSI 198
                     +L   +IL++ NLV K+S + L   L EN+    + +   G I
Sbjct: 134 EM---SYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYTSSLGGKI 183

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 77/166 (46%), Gaps = 16/166 (9%)
Query: 32  MGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           +G G  G++  GRLK        +AI+ LK   +   R +F+    ++ +  H +++   
Sbjct: 16  IGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLE 75
Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
           G   +C         + +I EY+ NG+L +++  +  +  T  Q +    G+  G+++L 
Sbjct: 76  GVVTKC-------KPVMIITEYMENGSLDAFLRKNDGR-FTVIQLVGMLRGIGSGMKYLS 127
Query: 147 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 192
                     +L   +IL++ NLV K+S + +  + E+  +  + T
Sbjct: 128 DM---SYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTT 170

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 77/166 (46%), Gaps = 16/166 (9%)
Query: 32  MGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           +G G  G++  GRLK        +AI+ LK   +   R +F+    ++ +  H +++   
Sbjct: 22  IGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLE 81
Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
           G   +C         + +I EY+ NG+L +++  +  +  T  Q +    G+  G+++L 
Sbjct: 82  GVVTKC-------KPVMIITEYMENGSLDAFLRKNDGR-FTVIQLVGMLRGIGSGMKYLS 133
Query: 147 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 192
                     +L   +IL++ NLV K+S + +  + E+  +  + T
Sbjct: 134 DM---SYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTT 176

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 28/155 (18%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G ++ G   N   +AI+ +K + S S  +F+   E++ KL H  LV   G C E
Sbjct: 35  IGSGQFGLVHLGYWLNKDKVAIKTIK-EGSMSEDDFIEEAEVMMKLSHPKLVQLYGVCLE 93
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQR--------ISAAIGVARGIQ 143
                   + I L+FE++ +G L  ++          TQR        +   + V  G+ 
Sbjct: 94  -------QAPICLVFEFMEHGCLSDYLR---------TQRGLFAAETLLGMCLDVCEGMA 137
Query: 144 FLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           +L       V   +L   + L+ +N V K+S + +
Sbjct: 138 YLEEAC---VIHRDLAARNCLVGENQVIKVSDFGM 169

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 70/151 (46%), Gaps = 12/151 (7%)
Query: 32  MGEGSKGQMYR-GRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCF 90
           +G+G  GQ  +    + G  + ++ L      + R F+  ++++  L H +++  +G  +
Sbjct: 18  LGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLY 77
Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 150
           +         R+  I EY+  GTLR  I     Q   W+QR+S A  +A G+ +LH+   
Sbjct: 78  K-------DKRLNFITEYIKGGTLRGIIKSMDSQ-YPWSQRVSFAKDIASGMAYLHSM-- 127
Query: 151 PGVFSNNLKITDILLDQNLVAKISSYNLPLL 181
             +   +L   + L+ +N    ++ + L  L
Sbjct: 128 -NIIHRDLNSHNCLVRENKNVVVADFGLARL 157

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 24/170 (14%)
Query: 18  ELEEATNNFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKM-----KKSHSTRNFMHHI 71
           +++     ++   F+GEG    +Y+ R KN    +AI+ +K+      K    R  +  I
Sbjct: 4   DVKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREI 63
Query: 72  ELISKLRHCH---LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTW 128
           +L+ +L H +   L+ A GH           S I L+F+++    L   I  ++   LT 
Sbjct: 64  KLLQELSHPNIIGLLDAFGH----------KSNISLVFDFM-ETDLEVIIKDNSL-VLTP 111
Query: 129 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           +   +  +   +G+++LH      +   +LK  ++LLD+N V K++ + L
Sbjct: 112 SHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGL 158

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 28/155 (18%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G ++ G   N   +AI+ ++ + + S  +F+   E++ KL H  LV   G C E
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQR--------ISAAIGVARGIQ 143
                   + I L+FE++ +G L  ++          TQR        +   + V  G+ 
Sbjct: 74  -------QAPICLVFEFMEHGCLSDYLR---------TQRGLFAAETLLGMCLDVCEGMA 117
Query: 144 FLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           +L       V   +L   + L+ +N V K+S + +
Sbjct: 118 YLEEA---SVIHRDLAARNCLVGENQVIKVSDFGM 149

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 32  MGEGSKGQMYRGRLKNGT-----FIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSA 85
           +G G  G++Y+G LK  +      +AI+ LK   +   R +F+    ++ +  H +++  
Sbjct: 52  IGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRL 111
Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFL 145
            G         S    + +I EY+ NG L  ++     +  +  Q +    G+A G+++L
Sbjct: 112 EGVI-------SKYKPMMIITEYMENGALDKFLREKDGE-FSVLQLVGMLRGIAAGMKYL 163
Query: 146 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 192
                      +L   +IL++ NLV K+S + L  + E+  +  + T
Sbjct: 164 ANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTT 207

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 28/155 (18%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G ++ G   N   +AI+ ++ + + S  +F+   E++ KL H  LV   G C E
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQR--------ISAAIGVARGIQ 143
                   + I L+FE++ +G L  ++          TQR        +   + V  G+ 
Sbjct: 74  -------QAPICLVFEFMEHGCLSDYLR---------TQRGLFAAETLLGMCLDVCEGMA 117
Query: 144 FLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           +L       V   +L   + L+ +N V K+S + +
Sbjct: 118 YLEEAC---VIHRDLAARNCLVGENQVIKVSDFGM 149

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 28/155 (18%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G ++ G   N   +AI+ ++ + + S  +F+   E++ KL H  LV   G C E
Sbjct: 18  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 76
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQR--------ISAAIGVARGIQ 143
                   + I L+FE++ +G L  ++          TQR        +   + V  G+ 
Sbjct: 77  -------QAPICLVFEFMEHGCLSDYLR---------TQRGLFAAETLLGMCLDVCEGMA 120
Query: 144 FLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           +L       V   +L   + L+ +N V K+S + +
Sbjct: 121 YLEEAC---VIHRDLAARNCLVGENQVIKVSDFGM 152

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 30/167 (17%)
Query: 32  MGEGSKGQMYRGRL------KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSA 85
           +GEG+ G+++          K+   +A++ LK     + ++F    EL++ L+H H+V  
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82
Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH--------------AWQSLTWTQR 131
            G C            + ++FEY+ +G L  ++  H              A   L  +Q 
Sbjct: 83  YGVC-------GDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQM 135
Query: 132 ISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           +  A  +A G+ +L +         +L   + L+  NL+ KI  + +
Sbjct: 136 LHIASQIASGMVYLAS---QHFVHRDLATRNCLVGANLLVKIGDFGM 179

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 28/155 (18%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G ++ G   N   +AI+ ++ + + S  +F+   E++ KL H  LV   G C E
Sbjct: 13  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 71
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQR--------ISAAIGVARGIQ 143
                   + I L+FE++ +G L  ++          TQR        +   + V  G+ 
Sbjct: 72  -------QAPICLVFEFMEHGCLSDYLR---------TQRGLFAAETLLGMCLDVCEGMA 115
Query: 144 FLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           +L       V   +L   + L+ +N V K+S + +
Sbjct: 116 YLEEAC---VIHRDLAARNCLVGENQVIKVSDFGM 147

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/165 (20%), Positives = 74/165 (44%), Gaps = 19/165 (11%)
Query: 25  NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV 83
           +F     +G G  GQ+++ + + +G    I+ +K     + R     ++ ++KL H ++V
Sbjct: 12  DFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAER----EVKALAKLDHVNIV 67
Query: 84  SALGHCFECY-FDDSSVSR---------IFLIFEYVPNGTLRSWISGHAWQSLTWTQRIS 133
              G C++ + +D  + S+         +F+  E+   GTL  WI     + L     + 
Sbjct: 68  HYNG-CWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALE 126
Query: 134 AAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
               + +G+ ++H+     + + +LK ++I L      KI  + L
Sbjct: 127 LFEQITKGVDYIHS---KKLINRDLKPSNIFLVDTKQVKIGDFGL 168

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/177 (19%), Positives = 76/177 (42%), Gaps = 12/177 (6%)
Query: 15  SLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTF-IAIRCLKMKKSHSTRNFMHHIEL 73
           S+++ E    +      +G G  G++Y G  K  +  +A++ LK + +     F+    +
Sbjct: 23  SMDKWEMERTDITMKHKLGGGQYGEVYVGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAV 81
Query: 74  ISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRIS 133
           + +++H +LV  LG C       +     +++ EY+P G L  ++     + +T    + 
Sbjct: 82  MKEIKHPNLVQLLGVC-------TLEPPFYIVTEYMPYGNLLDYLRECNREEVTAVVLLY 134
Query: 134 AAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH 190
            A  ++  +++L           +L   + L+ +N V K++ + L  L        H
Sbjct: 135 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHVVKVADFGLSRLMTGDTYTAH 188

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 16/158 (10%)
Query: 32  MGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           +G G  G++  G LK       F+AI+ LK   +   R +F+    ++ +  H +++   
Sbjct: 15  IGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLE 74
Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
           G         +  + + +I E++ NG+L S++  +  Q  T  Q +    G+A G+++L 
Sbjct: 75  GVV-------TKSTPVMIITEFMENGSLDSFLRQNDGQ-FTVIQLVGMLRGIAAGMKYLA 126
Query: 147 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN 184
                      L   +IL++ NLV K+S + L    E+
Sbjct: 127 DM---NYVHRALAARNILVNSNLVCKVSDFGLSRFLED 161

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 16/159 (10%)
Query: 32  MGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTR---NFMHHIELISKLRHCHLVSALG 87
           +G G+ G++  G+ +  G  +A++ L  +K  S          I+ +   RH H++    
Sbjct: 24  LGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHII---- 79
Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT 147
              + Y   S+ S IF++ EYV  G L  +I  +       ++R+   I    G+ + H 
Sbjct: 80  ---KLYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQI--LSGVDYCHR 134
Query: 148 GIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
            +   V   +LK  ++LLD ++ AKI+ + L  +  + E
Sbjct: 135 HM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 170

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 21/162 (12%)
Query: 24  NNFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMK---KSHSTRNFMHHIELISKLRH 79
           +NF+    +G+GS G++   R+K  G   A++ LK     +       M    ++S  R+
Sbjct: 23  DNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARN 82
Query: 80  CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQ---RISAAI 136
              ++ L  CF+      +  R+F + E+V  G L      H  +S  + +   R  AA 
Sbjct: 83  HPFLTQLFCCFQ------TPDRLFFVMEFVNGGDLMF----HIQKSRRFDEARARFYAA- 131
Query: 137 GVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
            +   + FLH     G+   +LK+ ++LLD     K++ + +
Sbjct: 132 EIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGM 170

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 31/166 (18%)
Query: 25  NFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV 83
           +F+    +G+GS G+++    K    F AI+ LK             + L+     C +V
Sbjct: 19  DFELHKMLGKGSFGKVFLAEFKKTNQFFAIKALK-----------KDVVLMDDDVECTMV 67
Query: 84  SA-----------LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRI 132
                        L H F C F   +   +F + EY+  G L   I   +      ++  
Sbjct: 68  EKRVLSLAWEHPFLTHMF-CTF--QTKENLFFVMEYLNGGDLMYHI--QSCHKFDLSRAT 122
Query: 133 SAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
             A  +  G+QFLH+    G+   +LK+ +ILLD++   KI+ + +
Sbjct: 123 FYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGM 165

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKLRH 79
           ++F+    +G+G  G +Y  R K   FI A++ L   +++K          IE+ + L H
Sbjct: 23  DDFEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQLRREIEIQAHLHH 82
Query: 80  CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISG----HAWQSLTWTQRISAA 135
            +++         YF D    RI+LI EY P G L   +         ++ T  + ++ A
Sbjct: 83  PNILRLYN-----YFYDRR--RIYLILEYAPRGELYKELQKSCTFDEQRTATIMEELADA 135
Query: 136 IGVARGIQFLHTGIVP 151
           +    G + +H  I P
Sbjct: 136 LMYCHGKKVIHRDIKP 151

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 23/160 (14%)
Query: 31  FMGEGSKGQMYRGRLKNGTFIAIRCLKMKK----SHSTRNFMHHIELISKLRHCHLVSAL 86
            +G G  G++YR     G  +A++  +       S +  N     +L + L+H ++++  
Sbjct: 14  IIGIGGFGKVYRA-FWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALR 72
Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
           G C +          + L+ E+   G L   +SG   + +     ++ A+ +ARG+ +LH
Sbjct: 73  GVCLK-------EPNLCLVMEFARGGPLNRVLSG---KRIPPDILVNWAVQIARGMNYLH 122
Query: 147 TGIVPGVFSNNLKITDILLDQ--------NLVAKISSYNL 178
              +  +   +LK ++IL+ Q        N + KI+ + L
Sbjct: 123 DEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGL 162

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 22/165 (13%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G +  G+ +    +AI+ +K + S S   F+   +++  L H  LV   G C  
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 88
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISG--HAWQS---LTWTQRISAAIGVARGIQFLH 146
                +    IF+I EY+ NG L +++    H +Q+   L   + +  A+      QFLH
Sbjct: 89  -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 143
Query: 147 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV 191
                     +L   + L++   V K+S + L     + E+   V
Sbjct: 144 ---------RDLAARNCLVNDQGVVKVSDFGLSRYVLDDEETSSV 179

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 22/152 (14%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G +  G+ +    +AI+ +K + S S   F+   +++  L H  LV   G C  
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 88
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISG--HAWQS---LTWTQRISAAIGVARGIQFLH 146
                +    IF+I EY+ NG L +++    H +Q+   L   + +  A+      QFLH
Sbjct: 89  -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 143
Query: 147 TGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
                     +L   + L++   V K+S + L
Sbjct: 144 ---------RDLAARNCLVNDQGVVKVSDFGL 166

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 23/174 (13%)
Query: 17  EELEEATNNFDTSAF--------MGEGSKGQ-MYRGRLKNGTFIAIRCLKMK---KSHST 64
           E+ ++ +NN D            +G+GS G+ M   R       AI+ LK     +    
Sbjct: 4   EDRKQPSNNLDRVKLTDFNFLMVLGKGSFGKVMLADRKGTEELYAIKILKKDVVIQDDDV 63
Query: 65  RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQ 124
              M    +++ L     ++ L  CF+      +V R++ + EYV  G L   I      
Sbjct: 64  ECTMVEKRVLALLDKPPFLTQLHSCFQ------TVDRLYFVMEYVNGGDLMYHIQQVG-- 115
Query: 125 SLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
                Q +  A  ++ G+ FLH     G+   +LK+ +++LD     KI+ + +
Sbjct: 116 KFKEPQAVFYAAEISIGLFFLHKR---GIIYRDLKLDNVMLDSEGHIKIADFGM 166

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 28/155 (18%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G ++ G   N   +AI+ ++ + + S  +F+   E++ KL H  LV   G C E
Sbjct: 16  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 74
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQR--------ISAAIGVARGIQ 143
                   + I L+ E++ +G L  ++          TQR        +   + V  G+ 
Sbjct: 75  -------QAPICLVTEFMEHGCLSDYLR---------TQRGLFAAETLLGMCLDVCEGMA 118
Query: 144 FLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           +L       V   +L   + L+ +N V K+S + +
Sbjct: 119 YLEEAC---VIHRDLAARNCLVGENQVIKVSDFGM 150

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 22/152 (14%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G +  G+ +    +AI+ +K + S S   F+   +++  L H  LV   G C  
Sbjct: 12  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 68
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISG--HAWQS---LTWTQRISAAIGVARGIQFLH 146
                +    IF+I EY+ NG L +++    H +Q+   L   + +  A+      QFLH
Sbjct: 69  -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 123
Query: 147 TGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
                     +L   + L++   V K+S + L
Sbjct: 124 ---------RDLAARNCLVNDQGVVKVSDFGL 146

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/177 (18%), Positives = 75/177 (42%), Gaps = 12/177 (6%)
Query: 15  SLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTF-IAIRCLKMKKSHSTRNFMHHIEL 73
           SL++ E    +      +G G  G++Y G  K  +  +A++ LK + +     F+    +
Sbjct: 2   SLDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAV 60
Query: 74  ISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRIS 133
           + +++H +LV  LG C       +     ++I E++  G L  ++     Q ++    + 
Sbjct: 61  MKEIKHPNLVQLLGVC-------TREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLY 113
Query: 134 AAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH 190
            A  ++  +++L           +L   + L+ +N + K++ + L  L        H
Sbjct: 114 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAH 167

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 22/152 (14%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G +  G+ +    +AI+ +K + S S   F+   +++  L H  LV   G C  
Sbjct: 23  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 79
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISG--HAWQS---LTWTQRISAAIGVARGIQFLH 146
                +    IF+I EY+ NG L +++    H +Q+   L   + +  A+      QFLH
Sbjct: 80  -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 134
Query: 147 TGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
                     +L   + L++   V K+S + L
Sbjct: 135 ---------RDLAARNCLVNDQGVVKVSDFGL 157

>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 22/145 (15%)
Query: 32  MGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCF 90
           +G+G+ G +Y GR L N   IAI+ +  + S  ++     I L   L+H ++V  LG   
Sbjct: 16  LGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGS-- 73
Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLT--------WTQRISAAIGVARGI 142
              F ++   +IF+  E VP G+L + +    W  L         +T++I   +      
Sbjct: 74  ---FSENGFIKIFM--EQVPGGSLSALLRS-KWGPLKDNEQTIGFYTKQILEGLKYLHDN 127
Query: 143 QFLHTGI-----VPGVFSNNLKITD 162
           Q +H  I     +   +S  LKI+D
Sbjct: 128 QIVHRDIKGDNVLINTYSGVLKISD 152

>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase Kinase 5 Length = 295

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 22/145 (15%)
Query: 32  MGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCF 90
           +G+G+ G +Y GR L N   IAI+ +  + S  ++     I L   L+H ++V  LG   
Sbjct: 30  LGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGS-- 87
Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLT--------WTQRISAAIGVARGI 142
              F ++   +IF+  E VP G+L + +    W  L         +T++I   +      
Sbjct: 88  ---FSENGFIKIFM--EQVPGGSLSALLRSK-WGPLKDNEQTIGFYTKQILEGLKYLHDN 141
Query: 143 QFLHTGI-----VPGVFSNNLKITD 162
           Q +H  I     +   +S  LKI+D
Sbjct: 142 QIVHRDIKGDNVLINTYSGVLKISD 166

>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A Resolution Length = 336

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 27/170 (15%)
Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV 83
           +N      +G G  G +Y+G L     +A++        + +NF++        ++ + V
Sbjct: 13  DNLKLLELIGRGRYGAVYKGSLDERP-VAVKVFSFA---NRQNFINE-------KNIYRV 61
Query: 84  SALGHCFECYF--DDSSVS-----RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAI 136
             + H     F   D  V+        L+ EY PNG+L  ++S H   +  W      A 
Sbjct: 62  PLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLH---TSDWVSSCRLAH 118
Query: 137 GVARGIQFLHTGIV------PGVFSNNLKITDILLDQNLVAKISSYNLPL 180
            V RG+ +LHT +       P +   +L   ++L+  +    IS + L +
Sbjct: 119 SVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSM 168

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 22/152 (14%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G +  G+ +    +AI+ +K + S S   F+   +++  L H  LV   G C  
Sbjct: 16  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 72
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISG--HAWQS---LTWTQRISAAIGVARGIQFLH 146
                +    IF+I EY+ NG L +++    H +Q+   L   + +  A+      QFLH
Sbjct: 73  -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 127
Query: 147 TGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
                     +L   + L++   V K+S + L
Sbjct: 128 ---------RDLAARNCLVNDQGVVKVSDFGL 150

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 22/152 (14%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G +  G+ +    +AI+ +K + S S   F+   +++  L H  LV   G C  
Sbjct: 17  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 73
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISG--HAWQS---LTWTQRISAAIGVARGIQFLH 146
                +    IF+I EY+ NG L +++    H +Q+   L   + +  A+      QFLH
Sbjct: 74  -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 128
Query: 147 TGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
                     +L   + L++   V K+S + L
Sbjct: 129 ---------RDLAARNCLVNDQGVVKVSDFGL 151

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 22/152 (14%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G +  G+ +    +AI+ +K + S S   F+   +++  L H  LV   G C  
Sbjct: 17  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 73
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISG--HAWQS---LTWTQRISAAIGVARGIQFLH 146
                +    IF+I EY+ NG L +++    H +Q+   L   + +  A+      QFLH
Sbjct: 74  -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 128
Query: 147 TGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
                     +L   + L++   V K+S + L
Sbjct: 129 ---------RDLAARNCLVNDQGVVKVSDFGL 151

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 31/166 (18%)
Query: 25  NFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV 83
           +F     +G+GS G+++    K    F AI+ LK             + L+     C +V
Sbjct: 18  DFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALK-----------KDVVLMDDDVECTMV 66
Query: 84  SA-----------LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRI 132
                        L H F C F   +   +F + EY+  G L   I   +      ++  
Sbjct: 67  EKRVLSLAWEHPFLTHMF-CTF--QTKENLFFVMEYLNGGDLMYHI--QSCHKFDLSRAT 121
Query: 133 SAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
             A  +  G+QFLH+    G+   +LK+ +ILLD++   KI+ + +
Sbjct: 122 FYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGM 164

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 79/188 (42%), Gaps = 39/188 (20%)
Query: 20  EEATNNFDTSAFMGEGSKGQMYRGR------LKNGTFIAIRCLKMKKSHSTR-NFMHHIE 72
           E   NN +    +GEG+ G++++ R       +  T +A++ LK + S   + +F     
Sbjct: 43  EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAA 102
Query: 73  LISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTL------------------ 114
           L+++  + ++V  LG C       +    + L+FEY+  G L                  
Sbjct: 103 LMAEFDNPNIVKLLGVC-------AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHS 155
Query: 115 ----RSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV 170
               R+ +S      L+  +++  A  VA G+ +L           +L   + L+ +N+V
Sbjct: 156 DLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRDLATRNCLVGENMV 212
Query: 171 AKISSYNL 178
            KI+ + L
Sbjct: 213 VKIADFGL 220

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	3e-50
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	1e-43
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	3e-35
3soc_A	322	Activin receptor type-2A; structural genomics cons	1e-29
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	1e-24
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	1e-21
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	9e-20
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	5e-19
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-18
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	3e-18
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	4e-18
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	8e-18
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	9e-18
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-17
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	4e-16
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	1e-15
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	4e-15
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	2e-14
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-14
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	3e-14
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	5e-14
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	5e-14
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	1e-13
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-13
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	1e-13
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-13
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-13
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-13
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	3e-13
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	3e-13
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	8e-13
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	9e-13
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	2e-12
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-12
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	4e-12
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	1e-11
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	1e-11
4aoj_A	329	High affinity nerve growth factor receptor; transf	1e-11
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	1e-11
3pls_A	298	Macrophage-stimulating protein receptor; protein k	2e-11
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	2e-11
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	2e-11
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	2e-11
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	5e-11
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	5e-11
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	6e-11
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	7e-11
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	7e-11
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	9e-11
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	9e-11
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	1e-10
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-10
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	1e-10
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	1e-10
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	1e-10
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	1e-10
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	2e-10
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-10
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	2e-10
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	3e-10
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	5e-10
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	7e-10
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	7e-10
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	8e-10
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	8e-10
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	1e-09
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	2e-09
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	2e-09
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	2e-09
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-09
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	3e-09
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	4e-09
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	6e-09
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	8e-09
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	8e-09
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	1e-08
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	1e-08
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	4e-08
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	5e-08
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	6e-08
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	1e-07
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-07
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-07
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	2e-07
2a19_B	284	Interferon-induced, double-stranded RNA-activated	3e-07
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	3e-07
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	3e-07
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	5e-07
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	8e-07
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	8e-07
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-06
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-06
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	5e-06
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	8e-06
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	1e-05
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	2e-04
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	2e-04
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	2e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-04
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	4e-04
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	5e-04
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	5e-04
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	7e-04
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	7e-04
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	7e-04

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  164 bits (418), Expect = 3e-50
 Identities = 62/183 (33%), Positives = 97/183 (53%), Gaps = 13/183 (7%)

Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHI 71
               L +LEEATNNFD    +G G  G++Y+G L++G  +A++    + S     F   I
Sbjct: 27  YRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEI 86

Query: 72  ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISG--HAWQSLTWT 129
           E +S  RH HLVS +G C E          I LI++Y+ NG L+  + G      S++W 
Sbjct: 87  ETLSFCRHPHLVSLIGFCDE------RNEMI-LIYKYMENGNLKRHLYGSDLPTMSMSWE 139

Query: 130 QRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVG 189
           QR+   IG ARG+ +LHT     +   ++K  +ILLD+N V KI+ + +       ++  
Sbjct: 140 QRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFGISKKGTELDQ-T 195

Query: 190 HVT 192
           H++
Sbjct: 196 HLS 198

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  147 bits (374), Expect = 1e-43
 Identities = 57/184 (30%), Positives = 95/184 (51%), Gaps = 12/184 (6%)

Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH-STRNFMHH 70
           + FSL EL+ A++NF     +G G  G++Y+GRL +GT +A++ LK +++      F   
Sbjct: 18  KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTE 77

Query: 71  IELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQS--LTW 128
           +E+IS   H +L+   G C           R+ L++ Y+ NG++ S +         L W
Sbjct: 78  VEMISMAVHRNLLRLRGFCMT------PTERL-LVYPYMANGSVASCLRERPESQPPLDW 130

Query: 129 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKV 188
            +R   A+G ARG+ +LH    P +   ++K  +ILLD+   A +  + L  L +   K 
Sbjct: 131 PKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMD--YKD 188

Query: 189 GHVT 192
            HVT
Sbjct: 189 THVT 192

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  124 bits (315), Expect = 3e-35
 Identities = 57/177 (32%), Positives = 85/177 (48%), Gaps = 28/177 (15%)

Query: 12  RTFSLEELEEATNNFDTSA------FMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST- 64
            +FS  EL+  TNNFD          MGEG  G +Y+G + N T +A++ L      +T 
Sbjct: 13  HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTE 71

Query: 65  ---RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISG- 120
              + F   I++++K +H +LV  LG   +    D       L++ Y+PNG+L   +S  
Sbjct: 72  ELKQQFDQEIKVMAKCQHENLVELLGFSSD---GDD---LC-LVYVYMPNGSLLDRLSCL 124

Query: 121 HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSN---NLKITDILLDQNLVAKIS 174
                L+W  R   A G A GI FLH         +   ++K  +ILLD+   AKIS
Sbjct: 125 DGTPPLSWHMRCKIAQGAANGINFLHEN------HHIHRDIKSANILLDEAFTAKIS 175

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  110 bits (277), Expect = 1e-29
 Identities = 29/168 (17%), Positives = 67/168 (39%), Gaps = 15/168 (8%)

Query: 14  FSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIEL 73
              E L   +           G  G +++ +L    ++A++   ++   S +   + +  
Sbjct: 14  LGTENLYFQSMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQDKQSWQ-NEYEVYS 71

Query: 74  ISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRIS 133
           +  ++H +++  +G         S    ++LI  +   G+L  ++  +    ++W +   
Sbjct: 72  LPGMKHENILQFIGAEKR---GTSVDVDLWLITAFHEKGSLSDFLKAN---VVSWNELCH 125

Query: 134 AAIGVARGIQFLHTGIVPGVFSNNLKI-------TDILLDQNLVAKIS 174
            A  +ARG+ +LH  I      +   I        ++LL  NL A I+
Sbjct: 126 IAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIA 173

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 97.6 bits (243), Expect = 1e-24
 Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 17/169 (10%)

Query: 14  FSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMH--HI 71
            +  E     +N      +G G  G +Y+G L +   +A+   K+    + +NF++  +I
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAV---KVFSFANRQNFINEKNI 58

Query: 72  ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQR 131
             +  + H ++   +                 L+ EY PNG+L  ++S H   +  W   
Sbjct: 59  YRVPLMEHDNIARFIVGDERV--TADGRMEYLLVMEYYPNGSLXKYLSLH---TSDWVSS 113

Query: 132 ISAAIGVARGIQFLHTGIVPGVFSN------NLKITDILLDQNLVAKIS 174
              A  V RG+ +LHT +  G          +L   ++L+  +    IS
Sbjct: 114 CRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVIS 162

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 88.4 bits (220), Expect = 1e-21
 Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 9/145 (6%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHS--TRNFMHHIELISKLRHCHLVSALGHC 89
           + E   G++++GR + G  I ++ LK++   +  +R+F      +    H +++  LG C
Sbjct: 18  LNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGAC 76

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGI 149
                         LI  ++P G+L + +       +  +Q +  A+ +ARG+ FLHT +
Sbjct: 77  -----QSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHT-L 130

Query: 150 VPGVFSNNLKITDILLDQNLVAKIS 174
            P +  + L    +++D+++ A+IS
Sbjct: 131 EPLIPRHALNSRSVMIDEDMTARIS 155

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 83.9 bits (208), Expect = 9e-20
 Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 22/148 (14%)

Query: 33  GEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G+G  GQ  +   +  G  + ++ L      + R F+  ++++  L H +++  +G    
Sbjct: 19  GKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVL-- 76

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                    R+  I EY+  GTLR  I         W+QR+S A  +A G+ +LH     
Sbjct: 77  -----YKDKRLNFITEYIKGGTLRGIIKSMD-SQYPWSQRVSFAKDIASGMAYLH----- 125

Query: 152 GVFSNN-----LKITDILLDQNLVAKIS 174
              S N     L   + L+ +N    ++
Sbjct: 126 ---SMNIIHRDLNSHNCLVRENKNVVVA 150

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 82.0 bits (203), Expect = 5e-19
 Identities = 28/144 (19%), Positives = 61/144 (42%), Gaps = 14/144 (9%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G G+ G + + + +    +AI+  +++     + F+  +  +S++ H ++V   G C   
Sbjct: 17  GRGAFGVVCKAKWR-AKDVAIK--QIESESERKAFIVELRQLSRVNHPNIVKLYGACLNP 73

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWI-SGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                      L+ EY   G+L + +         T    +S  +  ++G+ +LH+    
Sbjct: 74  VC---------LVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPK 124

Query: 152 GVFSNNLKITDILLDQN-LVAKIS 174
            +   +LK  ++LL     V KI 
Sbjct: 125 ALIHRDLKPPNLLLVAGGTVLKIC 148

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 81.2 bits (201), Expect = 1e-18
 Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 12/145 (8%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCHLVSALGHCF 90
           G GS G ++R     G+ +A++ L  +  H+     F+  + ++ +LRH ++V  +G   
Sbjct: 46  GAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV- 103

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWI-SGHAWQSLTWTQRISAAIGVARGIQFLHTGI 149
                 +    + ++ EY+  G+L   +    A + L   +R+S A  VA+G+ +LH   
Sbjct: 104 ------TQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN-R 156

Query: 150 VPGVFSNNLKITDILLDQNLVAKIS 174
            P +   NLK  ++L+D+    K+ 
Sbjct: 157 NPPIVHRNLKSPNLLVDKKYTVKVC 181

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 79.7 bits (197), Expect = 3e-18
 Identities = 32/154 (20%), Positives = 67/154 (43%), Gaps = 22/154 (14%)

Query: 33  GEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHST-------RNFMHHIELISKLRHCHLVS 84
           G+G  G +++GRL  + + +AI+ L +  S          + F   + ++S L H ++V 
Sbjct: 28  GKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVK 87

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQF 144
             G                ++ E+VP G L   +   A   + W+ ++   + +A GI++
Sbjct: 88  LYGLMHNPPR---------MVMEFVPCGDLYHRLLDKA-HPIKWSVKLRLMLDIALGIEY 137

Query: 145 LHTGIVPGVF----SNNLKITDILLDQNLVAKIS 174
           +     P V     S N+ +  +  +  + AK++
Sbjct: 138 MQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVA 171

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 79.0 bits (195), Expect = 8e-18
 Identities = 30/149 (20%), Positives = 63/149 (42%), Gaps = 17/149 (11%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMH--HIELISKLRHCHLVSALGHCF 90
           G+G  G+++ G+ + G  +A+   K+  +    ++     I     +RH +++  +    
Sbjct: 46  GKGRYGEVWMGKWR-GEKVAV---KVFFTTEEASWFRETEIYQTVLMRHENILGFIAADI 101

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 150
           +      S ++++LI +Y  NG+L  ++      +L     +  A     G+  LHT I 
Sbjct: 102 K---GTGSWTQLYLITDYHENGSLYDYLKST---TLDAKSMLKLAYSSVSGLCHLHTEIF 155

Query: 151 PGVFSNN-----LKITDILLDQNLVAKIS 174
                       LK  +IL+ +N    I+
Sbjct: 156 STQGKPAIAHRDLKSKNILVKKNGTCCIA 184

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 79.1 bits (195), Expect = 9e-18
 Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 17/149 (11%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMH--HIELISKLRHCHLVSALGHCF 90
           G+G  G+++RG+ + G  +A+   K+  S   R++     I     LRH +++  +    
Sbjct: 51  GKGRFGEVWRGKWR-GEEVAV---KIFSSREERSWFREAEIYQTVMLRHENILGFIAADN 106

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 150
           +    + + ++++L+ +Y  +G+L  +++ +   ++T    I  A+  A G+  LH  IV
Sbjct: 107 KD---NGTWTQLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIV 160

Query: 151 -----PGVFSNNLKITDILLDQNLVAKIS 174
                P +   +LK  +IL+ +N    I+
Sbjct: 161 GTQGKPAIAHRDLKSKNILVKKNGTCCIA 189

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 17/149 (11%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIEL--ISKLRHCHLVSALGHCF 90
           G+G  G+++RG    G  +A+   K+  S   +++    EL     LRH +++  +    
Sbjct: 17  GKGRYGEVWRGSW-QGENVAV---KIFSSRDEKSWFRETELYNTVMLRHENILGFIASDM 72

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 150
                  S ++++LI  Y   G+L  ++      +L     +   + +A G+  LH  I 
Sbjct: 73  T---SRHSSTQLWLITHYHEMGSLYDYLQLT---TLDTVSCLRIVLSIASGLAHLHIEIF 126

Query: 151 PGVFSNN-----LKITDILLDQNLVAKIS 174
                       LK  +IL+ +N    I+
Sbjct: 127 GTQGKPAIAHRDLKSKNILVKKNGQCCIA 155

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 72.3 bits (178), Expect = 1e-15
 Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 23/154 (14%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST----RNFMHHIELISKLRHCHLVSALGH 88
           G G  G++YR     G  +A++  +            N     +L + L+H ++++  G 
Sbjct: 16  GIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGV 74

Query: 89  CFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTG 148
           C            + L+ E+   G L   +SG     +     ++ A+ +ARG+ +LH  
Sbjct: 75  C-------LKEPNLCLVMEFARGGPLNRVLSGK---RIPPDILVNWAVQIARGMNYLHDE 124

Query: 149 IVPGVFSNNLKITDILLDQ--------NLVAKIS 174
            +  +   +LK ++IL+ Q        N + KI+
Sbjct: 125 AIVPIIHRDLKSSNILILQKVENGDLSNKILKIT 158

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 71.2 bits (175), Expect = 4e-15
 Identities = 28/144 (19%), Positives = 63/144 (43%), Gaps = 16/144 (11%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCHLVSALGHCF 90
           G GS G +Y+G+  +G  +A++ L +        + F + + ++ K RH +++  +G+  
Sbjct: 33  GSGSFGTVYKGKW-HGD-VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS- 89

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 150
                  +  ++ ++ ++    +L   +           + I  A   ARG+ +LH    
Sbjct: 90  -------TAPQLAIVTQWCEGSSLYHHLHASE-TKFEMKKLIDIARQTARGMDYLHA--- 138

Query: 151 PGVFSNNLKITDILLDQNLVAKIS 174
             +   +LK  +I L ++   KI 
Sbjct: 139 KSIIHRDLKSNNIFLHEDNTVKIG 162

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 69.2 bits (170), Expect = 2e-14
 Identities = 34/173 (19%), Positives = 71/173 (41%), Gaps = 22/173 (12%)

Query: 7   GLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRN 66
            + A   F                 +G+G  G +  G  + G  +A++C+K     + + 
Sbjct: 4   SVAAQDEFYRSGWALNMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIK--NDATAQA 60

Query: 67  FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSL 126
           F+    ++++LRH +LV  LG   E          ++++ EY+  G+L  ++       L
Sbjct: 61  FLAEASVMTQLRHSNLVQLLGVIVE------EKGGLYIVTEYMAKGSLVDYLRSRGRSVL 114

Query: 127 TWTQRISAAIGVARGIQFLHTGIVPGVFSNN-----LKITDILLDQNLVAKIS 174
                +  ++ V   +++L          NN     L   ++L+ ++ VAK+S
Sbjct: 115 GGDCLLKFSLDVCEAMEYLE--------GNNFVHRDLAARNVLVSEDNVAKVS 159

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 16/144 (11%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCHLVSALGHCF 90
           G+G  GQ+Y GR  +G  +AIR + +++ +    + F   +    + RH ++V  +G C 
Sbjct: 42  GKGRFGQVYHGRW-HGE-VAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGAC- 98

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 150
                  S   + +I       TL S +       L   +    A  + +G+ +LH    
Sbjct: 99  ------MSPPHLAIITSLCKGRTLYSVVRDAK-IVLDVNKTRQIAQEIVKGMGYLHA--- 148

Query: 151 PGVFSNNLKITDILLDQNLVAKIS 174
            G+   +LK  ++  D   V  I+
Sbjct: 149 KGILHKDLKSKNVFYDNGKV-VIT 171

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 68.9 bits (169), Expect = 3e-14
 Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 24/152 (15%)

Query: 33  GEGSKGQMYRGRLK-----NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALG 87
           G+G+ G +   R        G  +A++ L+       R+F   I+++  L    +V   G
Sbjct: 32  GKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRG 91

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT 147
             +           + L+ EY+P+G LR ++  H    L  ++ +  +  + +G+++L  
Sbjct: 92  VSY-----GPGRQSLRLVMEYLPSGCLRDFLQRHR-ARLDASRLLLYSSQICKGMEYLG- 144

Query: 148 GIVPGVFSNN-----LKITDILLDQNLVAKIS 174
                  S       L   +IL++     KI+
Sbjct: 145 -------SRRCVHRDLAARNILVESEAHVKIA 169

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 69.0 bits (169), Expect = 5e-14
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 22/147 (14%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G G  G+++       T +A++ +K   S S   F+    ++  L+H  LV       + 
Sbjct: 197 GAGQFGEVWMATYNKHTKVAVKTMK-PGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTK- 254

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG 152
                    I++I E++  G+L  ++           + I  +  +A G+ F+       
Sbjct: 255 -------EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE------ 301

Query: 153 VFSNN-----LKITDILLDQNLVAKIS 174
               N     L+  +IL+  +LV KI+
Sbjct: 302 --QRNYIHRDLRAANILVSASLVCKIA 326

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 67.6 bits (166), Expect = 5e-14
 Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 22/147 (14%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G G  G+++ G     T +A++ LK + S S   F+    L+ +L+H  LV       + 
Sbjct: 22  GAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ- 79

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG 152
                    I++I EY+ NG+L  ++   +   LT  + +  A  +A G+ F+       
Sbjct: 80  -------EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE------ 126

Query: 153 VFSNN-----LKITDILLDQNLVAKIS 174
               N     L+  +IL+   L  KI+
Sbjct: 127 --ERNYIHRDLRAANILVSDTLSCKIA 151

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 25/153 (16%)

Query: 33  GEGSKGQMYRGRLK-----NGTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSAL 86
           GEG  G++   R        G  +A++ LK +   +        IE++  L H ++V   
Sbjct: 30  GEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYK 89

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
           G C E        + I LI E++P+G+L+ ++  +    +   Q++  A+ + +G+ +L 
Sbjct: 90  GICTE-----DGGNGIKLIMEFLPSGSLKEYLPKNK-NKINLKQQLKYAVQICKGMDYLG 143

Query: 147 TGIVPGVFSNN-----LKITDILLDQNLVAKIS 174
                   S       L   ++L++     KI 
Sbjct: 144 --------SRQYVHRDLAARNVLVESEHQVKIG 168

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 67.0 bits (164), Expect = 1e-13
 Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 27/153 (17%)

Query: 33  GEGSKGQMYRGRLKN-----GTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSAL 86
           GEG  G++            G  +A++ LK          +   I+++  L H H++   
Sbjct: 40  GEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYK 99

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
           G C +     +  + + L+ EYVP G+LR ++  H   S+   Q +  A  +  G+ +LH
Sbjct: 100 GCCED-----AGAASLQLVMEYVPLGSLRDYLPRH---SIGLAQLLLFAQQICEGMAYLH 151

Query: 147 TGIVPGVFSNN-----LKITDILLDQNLVAKIS 174
                   + +     L   ++LLD + + KI 
Sbjct: 152 --------AQHYIHRDLAARNVLLDNDRLVKIG 176

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 67.5 bits (165), Expect = 1e-13
 Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 22/147 (14%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV       E 
Sbjct: 193 GQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE- 250

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG 152
                    I+++ EY+  G+L  ++ G   + L   Q +  A  +A G+ ++       
Sbjct: 251 -------EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE------ 297

Query: 153 VFSNN-----LKITDILLDQNLVAKIS 174
               N     L+  +IL+ +NLV K++
Sbjct: 298 --RMNYVHRDLRAANILVGENLVCKVA 322

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 32/147 (21%), Positives = 67/147 (45%), Gaps = 22/147 (14%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G+G  G +  G  + G  +A++C+K     + + F+    ++++LRH +LV  LG   E 
Sbjct: 202 GKGEFGDVMLGDYR-GNKVAVKCIK--NDATAQAFLAEASVMTQLRHSNLVQLLGVIVEE 258

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG 152
                    ++++ EY+  G+L  ++       L     +  ++ V   +++L       
Sbjct: 259 K------GGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE------ 306

Query: 153 VFSNN-----LKITDILLDQNLVAKIS 174
              NN     L   ++L+ ++ VAK+S
Sbjct: 307 --GNNFVHRDLAARNVLVSEDNVAKVS 331

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 66.7 bits (163), Expect = 2e-13
 Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 22/148 (14%)

Query: 33  GEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G G  G++Y G  K     +A++ LK + +     F+    ++ +++H +LV  LG C  
Sbjct: 229 GGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 287

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                      ++I E++  G L  ++     Q ++    +  A  ++  +++L      
Sbjct: 288 EP-------PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE----- 335

Query: 152 GVFSNN-----LKITDILLDQNLVAKIS 174
                N     L   + L+ +N + K++
Sbjct: 336 ---KKNFIHRNLAARNCLVGENHLVKVA 360

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 66.8 bits (163), Expect = 2e-13
 Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 22/147 (14%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV       E 
Sbjct: 276 GQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE- 333

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG 152
                    I+++ EY+  G+L  ++ G   + L   Q +  A  +A G+ ++       
Sbjct: 334 -------EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE------ 380

Query: 153 VFSNN-----LKITDILLDQNLVAKIS 174
               N     L+  +IL+ +NLV K++
Sbjct: 381 --RMNYVHRDLRAANILVGENLVCKVA 405

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 24/152 (15%)

Query: 33  GEGSKGQMYRGRLK-----NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALG 87
           G+G+ G +   R        G  +A++ L+       R+F   IE++  L+H ++V   G
Sbjct: 19  GKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKG 78

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT 147
            C+      +    + LI EY+P G+LR ++  H  + +   + +     + +G+++L  
Sbjct: 79  VCYS-----AGRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLG- 131

Query: 148 GIVPGVFSNN-----LKITDILLDQNLVAKIS 174
                  +       L   +IL++     KI 
Sbjct: 132 -------TKRYIHRDLATRNILVENENRVKIG 156

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 24/152 (15%)

Query: 33  GEGSKGQMYRGRL-----KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALG 87
           G+G+ G +   R        G  +A++ L+       R+F   IE++  L+H ++V   G
Sbjct: 50  GKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKG 109

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT 147
            C+      +    + LI EY+P G+LR ++  H  + +   + +     + +G+++L  
Sbjct: 110 VCY-----SAGRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLG- 162

Query: 148 GIVPGVFSNN-----LKITDILLDQNLVAKIS 174
                  +       L   +IL++     KI 
Sbjct: 163 -------TKRYIHRDLATRNILVENENRVKIG 187

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 64.6 bits (158), Expect = 8e-13
 Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 25/152 (16%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRC-LKMKKSHST----RNFMHHIELISKLRHCHLVSALG 87
           G G  G +Y G L +     I C +K     +       F+    ++    H +++S LG
Sbjct: 34  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLG 93

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT 147
            C        S     ++  Y+ +G LR++I      + T    I   + VA+G+++L  
Sbjct: 94  ICLR------SEGSPLVVLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKYLA- 145

Query: 148 GIVPGVFSNN-----LKITDILLDQNLVAKIS 174
                  S       L   + +LD+    K++
Sbjct: 146 -------SKKFVHRDLAARNCMLDEKFTVKVA 170

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 65.0 bits (159), Expect = 9e-13
 Identities = 30/176 (17%), Positives = 68/176 (38%), Gaps = 23/176 (13%)

Query: 6   LGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHST 64
            G+  +R    ++      +      +G G+ G+++ GRL+ + T +A++  +       
Sbjct: 96  SGVVLHRAVPKDKWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDL 155

Query: 65  RN-FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAW 123
           +  F+    ++ +  H ++V  +G C +          I+++ E V  G   +++     
Sbjct: 156 KAKFLQEARILKQYSHPNIVRLIGVCTQK-------QPIYIVMELVQGGDFLTFLRTEG- 207

Query: 124 QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNN-----LKITDILLDQNLVAKIS 174
             L     +      A G+++L         S       L   + L+ +  V KIS
Sbjct: 208 ARLRVKTLLQMVGDAAAGMEYLE--------SKCCIHRDLAARNCLVTEKNVLKIS 255

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 33/152 (21%), Positives = 59/152 (38%), Gaps = 25/152 (16%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRC-LKMKKSHST----RNFMHHIELISKLRHCHLVSALG 87
           G G  G +Y G L +     I C +K     +       F+    ++    H +++S LG
Sbjct: 98  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLG 157

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT 147
            C        S     ++  Y+ +G LR++I      + T    I   + VA+G++FL  
Sbjct: 158 ICLR------SEGSPLVVLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKFLA- 209

Query: 148 GIVPGVFSNN-----LKITDILLDQNLVAKIS 174
                  S       L   + +LD+    K++
Sbjct: 210 -------SKKFVHRDLAARNCMLDEKFTVKVA 234

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 25/157 (15%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRC-LKMKKSHST-----RNFMHHIELISKLRHCHLVSAL 86
           GEG  G +  G LK     +++  +K  K  ++       F+     +    H +++  L
Sbjct: 43  GEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLL 102

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAW----QSLTWTQRISAAIGVARGI 142
           G C E       + +  +I  ++  G L +++         + +     +   + +A G+
Sbjct: 103 GVCIEM--SSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGM 160

Query: 143 QFLHTGIVPGVFSNN-----LKITDILLDQNLVAKIS 174
           ++L         + N     L   + +L  ++   ++
Sbjct: 161 EYLS--------NRNFLHRDLAARNCMLRDDMTVCVA 189

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 62.6 bits (153), Expect = 4e-12
 Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 22/171 (12%)

Query: 9   PAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFM 68
           P+         E    +      +G G  G +  G+ +    +AI+ +K + S S   F+
Sbjct: 9   PSTAGLGYGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFI 67

Query: 69  HHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTW 128
              +++  L H  LV   G C +          IF+I EY+ NG L +++          
Sbjct: 68  EEAKVMMNLSHEKLVQLYGVCTKQ-------RPIFIITEYMANGCLLNYLREMR-HRFQT 119

Query: 129 TQRISAAIGVARGIQFLHTGIVPGVFSNN-----LKITDILLDQNLVAKIS 174
            Q +     V   +++L         S       L   + L++   V K+S
Sbjct: 120 QQLLEMCKDVCEAMEYLE--------SKQFLHRDLAARNCLVNDQGVVKVS 162

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 61.4 bits (150), Expect = 1e-11
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 22/147 (14%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G G  G +  G+ K    +A++ +K + S S   F    + + KL H  LV   G C   
Sbjct: 17  GSGQFGVVKLGKWKGQYDVAVKMIK-EGSMSEDEFFQEAQTMMKLSHPKLVKFYGVC--- 72

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG 152
               S    I+++ EY+ NG L +++  H  + L  +Q +     V  G+ FL       
Sbjct: 73  ----SKEYPIYIVTEYISNGCLLNYLRSHG-KGLEPSQLLEMCYDVCEGMAFLE------ 121

Query: 153 VFSNN-----LKITDILLDQNLVAKIS 174
             S+      L   + L+D++L  K+S
Sbjct: 122 --SHQFIHRDLAARNCLVDRDLCVKVS 146

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 29/187 (15%), Positives = 68/187 (36%), Gaps = 24/187 (12%)

Query: 3   LGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRC-LKMKKS 61
           L +LG+       LE++      F     +G+G  G +   +LK      ++  +KM K+
Sbjct: 2   LDSLGISDELKEKLEDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKA 61

Query: 62  HST-----RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRS 116
                     F+     + +  H H+   +G           +    +I  ++ +G L +
Sbjct: 62  DIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSR-AKGRLPIPMVILPFMKHGDLHA 120

Query: 117 WISGHAW----QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNN-----LKITDILLDQ 167
           ++          +L     +   + +A G+++L         S N     L   + +L +
Sbjct: 121 FLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS--------SRNFIHRDLAARNCMLAE 172

Query: 168 NLVAKIS 174
           ++   ++
Sbjct: 173 DMTVCVA 179

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 40/169 (23%), Positives = 65/169 (38%), Gaps = 45/169 (26%)

Query: 33  GEGSKGQMYRGRLKNG------TFIAIRCLKMKKSHSTR---NFMHHIELISKLRHCHLV 83
           GEG+ G+++     N         +A+   K  K  S     +F    EL++ L+H H+V
Sbjct: 50  GEGAFGKVFLAECHNLLPEQDKMLVAV---KALKEASESARQDFQREAELLTMLQHQHIV 106

Query: 84  SALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH-------------AWQSLTWTQ 130
              G C E          + ++FEY+ +G L  ++  H             A   L   Q
Sbjct: 107 RFFGVCTEG-------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQ 159

Query: 131 RISAAIGVARGIQFLHTGIVPGVFSNN-----LKITDILLDQNLVAKIS 174
            ++ A  VA G+ +L           +     L   + L+ Q LV KI 
Sbjct: 160 LLAVASQVAAGMVYLA--------GLHFVHRDLATRNCLVGQGLVVKIG 200

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 22/147 (14%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G G  G ++ G   N   +AI+ ++ + + S  +F+   E++ KL H  LV   G C E 
Sbjct: 17  GSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ 75

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG 152
                  + I L+ E++ +G L  ++             +   + V  G+ +L       
Sbjct: 76  -------APICLVTEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLE------ 121

Query: 153 VFSNN-----LKITDILLDQNLVAKIS 174
                     L   + L+ +N V K+S
Sbjct: 122 --EACVIHRDLAARNCLVGENQVIKVS 146

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 29/152 (19%), Positives = 57/152 (37%), Gaps = 25/152 (16%)

Query: 33  GEGSKGQMYRGRLKNG----TFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSALG 87
           G+G  G +Y G   +        AI+ L           F+    L+  L H ++++ +G
Sbjct: 30  GKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIG 89

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT 147
                           ++  Y+ +G L  +I     ++ T    IS  + VARG+++L  
Sbjct: 90  IMLP------PEGLPHVLLPYMCHGDLLQFIRSPQ-RNPTVKDLISFGLQVARGMEYLA- 141

Query: 148 GIVPGVFSNN-----LKITDILLDQNLVAKIS 174
                          L   + +LD++   K++
Sbjct: 142 -------EQKFVHRDLAARNCMLDESFTVKVA 166

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 28/153 (18%), Positives = 58/153 (37%), Gaps = 28/153 (18%)

Query: 33  GEGSKGQMYRGRLKNG-----TFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSAL 86
           G G+ G +Y+G            +AI+ L+   S       +    +++ + + H+   L
Sbjct: 24  GSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLL 83

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
           G C          S + LI + +P G L  ++  H   ++     ++  + +A+G+ +L 
Sbjct: 84  GICLT--------STVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLE 134

Query: 147 TGIVPGVFSNNLKITD-----ILLDQNLVAKIS 174
                      L   D     +L+      KI+
Sbjct: 135 --------DRRLVHRDLAARNVLVKTPQHVKIT 159

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 28/150 (18%), Positives = 61/150 (40%), Gaps = 26/150 (17%)

Query: 33  GEGSKGQMYRGRLKNG-TFIAIRCLKMKKSHST--RNFMHHIELISKLRHCHLVSALGHC 89
           G G  G++Y G  K     +A+   K  K  +     F+    ++ +++H +LV  LG C
Sbjct: 22  GGGQYGEVYEGVWKKYSLTVAV---KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 78

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGI 149
                  +     ++I E++  G L  ++     Q ++    +  A  ++  +++L    
Sbjct: 79  -------TREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE--- 128

Query: 150 VPGVFSNN-----LKITDILLDQNLVAKIS 174
                  N     L   + L+ +N + K++
Sbjct: 129 -----KKNFIHRDLAARNCLVGENHLVKVA 153

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 45/169 (26%)

Query: 33  GEGSKGQMYRGRLKNG---TFIAIRCLKMKKSHST----RNFMHHIELISKL-RHCHLVS 84
           GEG+ GQ+ + R+K        AI   K  K +++    R+F   +E++ KL  H ++++
Sbjct: 34  GEGNFGQVLKARIKKDGLRMDAAI---KRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 90

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW--------------ISGHAWQSLTWTQ 130
            LG C            ++L  EY P+G L  +              I+     +L+  Q
Sbjct: 91  LLGACEHR-------GYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQ 143

Query: 131 RISAAIGVARGIQFLHTGIVPGVFSNNLKITD-----ILLDQNLVAKIS 174
            +  A  VARG+ +L                D     IL+ +N VAKI+
Sbjct: 144 LLHFAADVARGMDYLS--------QKQFIHRDLAARNILVGENYVAKIA 184

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 59.6 bits (145), Expect = 5e-11
 Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 35/162 (21%)

Query: 33  GEGSKGQMYRGRLKNG------TFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSA 85
           G+GS G +Y G  K        T +AI+ +    S   R  F++   ++ +    H+V  
Sbjct: 34  GQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRL 93

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH--------AWQSLTWTQRISAAIG 137
           LG   +            +I E +  G L+S++                + ++ I  A  
Sbjct: 94  LGVVSQ---GQP----TLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGE 146

Query: 138 VARGIQFLHTGIVPGVFSNN-----LKITDILLDQNLVAKIS 174
           +A G+ +L+        +N      L   + ++ ++   KI 
Sbjct: 147 IADGMAYLN--------ANKFVHRDLAARNCMVAEDFTVKIG 180

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 59.6 bits (145), Expect = 5e-11
 Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 29/154 (18%)

Query: 33  GEGSKGQMYRGRLK----NGTFIAIRCLK---MKKSHSTRNFMHHIELISKLRHCHLVSA 85
           G+GS G + RG           +A++CLK   + +  +  +F+  +  +  L H +L+  
Sbjct: 27  GDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRL 86

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFL 145
            G              + ++ E  P G+L   +  H             A+ VA G+ +L
Sbjct: 87  YGVVLT--------PPMKMVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYL 137

Query: 146 HTGIVPGVFSNNLKITD-----ILLDQNLVAKIS 174
                    S      D     +LL    + KI 
Sbjct: 138 E--------SKRFIHRDLAARNLLLATRDLVKIG 163

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 59.2 bits (144), Expect = 6e-11
 Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 26/151 (17%)

Query: 33  GEGSKGQMYRGRLKNG---TFIAIRCLKM-KKSHSTRNFMHHIELISKLRHCHLVSALGH 88
           G G+ G + +G  +       +AI+ LK   +   T   M   +++ +L + ++V  +G 
Sbjct: 19  GCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGV 78

Query: 89  CFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTG 148
           C            + L+ E    G L  ++ G   + +  +        V+ G+++L   
Sbjct: 79  CQA--------EALMLVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLE-- 127

Query: 149 IVPGVFSNN-----LKITDILLDQNLVAKIS 174
                   N     L   ++LL     AKIS
Sbjct: 128 ------EKNFVHRDLAARNVLLVNRHYAKIS 152

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 59.3 bits (144), Expect = 7e-11
 Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 19/125 (15%)

Query: 33  GEGSKGQMYRGRLKNG------TFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSA 85
           G G+ G++Y G++           +A++ L    S      F+    +ISK  H ++V  
Sbjct: 80  GHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRC 139

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH-----AWQSLTWTQRISAAIGVAR 140
           +G   +           F++ E +  G L+S++           SL     +  A  +A 
Sbjct: 140 IGVSLQS-------LPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIAC 192

Query: 141 GIQFL 145
           G Q+L
Sbjct: 193 GCQYL 197

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 59.3 bits (144), Expect = 7e-11
 Identities = 28/153 (18%), Positives = 58/153 (37%), Gaps = 28/153 (18%)

Query: 33  GEGSKGQMYRGRLKNG-----TFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           G G+ G +Y+G            +AI+ L+   S       +    +++ + + H+   L
Sbjct: 24  GSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLL 83

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
           G C          S + LI + +P G L  ++  H   ++     ++  + +A+G+ +L 
Sbjct: 84  GICLT--------STVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLE 134

Query: 147 TGIVPGVFSNNLKITD-----ILLDQNLVAKIS 174
                      L   D     +L+      KI+
Sbjct: 135 --------DRRLVHRDLAARNVLVKTPQHVKIT 159

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 58.9 bits (143), Expect = 9e-11
 Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 19/125 (15%)

Query: 33  GEGSKGQMYRGRLKNG------TFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSA 85
           G G+ G++Y G++           +A++ L    S      F+    +ISK  H ++V  
Sbjct: 39  GHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRC 98

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH-----AWQSLTWTQRISAAIGVAR 140
           +G   +           F++ E +  G L+S++           SL     +  A  +A 
Sbjct: 99  IGVSLQS-------LPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIAC 151

Query: 141 GIQFL 145
           G Q+L
Sbjct: 152 GCQYL 156

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 58.9 bits (143), Expect = 9e-11
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 26/152 (17%)

Query: 33  GEGSKGQMYRGRLKNG----TFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALG 87
           G G  G++  GRLK        +AI+ LK+  +   R +F+    ++ +  H +++   G
Sbjct: 54  GAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEG 113

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT 147
                    +    + ++ EY+ NG+L S++  H  Q  T  Q +    G+A G+++L  
Sbjct: 114 VV-------TKSKPVMIVTEYMENGSLDSFLRKHDAQ-FTVIQLVGMLRGIASGMKYLS- 164

Query: 148 GIVPGVFSNN-----LKITDILLDQNLVAKIS 174
                          L   +IL++ NLV K+S
Sbjct: 165 -------DMGYVHRDLAARNILINSNLVCKVS 189

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 26/144 (18%), Positives = 55/144 (38%), Gaps = 9/144 (6%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           GEG    +     L +G F A++ +   +           ++     H +++  + +C  
Sbjct: 38  GEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLR 97

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAI--GVARGIQFLHTGI 149
              +  +    +L+  +   GTL + I     +    T+     +  G+ RG++ +H   
Sbjct: 98  ---ERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA-- 152

Query: 150 VPGVFSNNLKITDILLDQNLVAKI 173
             G    +LK T+ILL       +
Sbjct: 153 -KGYAHRDLKPTNILLGDEGQPVL 175

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 12/124 (9%)

Query: 31  FMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHC 89
            +G+G+ G +Y GR L N   IAI+ +  + S  ++     I L   L+H ++V  LG  
Sbjct: 29  VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLG-- 86

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIG--VARGIQFLHT 147
              + ++  +  IF+  E VP G+L + +    W  L   ++        +  G+++LH 
Sbjct: 87  --SFSENGFIK-IFM--EQVPGGSLSA-LLRSKWGPLKDNEQTIGFYTKQILEGLKYLHD 140

Query: 148 -GIV 150
             IV
Sbjct: 141 NQIV 144

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 16/121 (13%)

Query: 33  GEGSKGQMYRGRLKN--------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVS 84
           G+G+  ++++G  +          T + ++ L     + + +F     ++SKL H HLV 
Sbjct: 17  GQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVL 76

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQF 144
             G C              L+ E+V  G+L +++  +    +    ++  A  +A  + F
Sbjct: 77  NYGVCVCG-------DENILVQEFVKFGSLDTYLKKNK-NCINILWKLEVAKQLAAAMHF 128

Query: 145 L 145
           L
Sbjct: 129 L 129

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 35/159 (22%), Positives = 74/159 (46%), Gaps = 24/159 (15%)

Query: 24  NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCL---KMKKSHSTRNFMHHIELISKLRH 79
            +F+    +G+G  G +Y  R  ++   +A++ L   +++K+         +E+ S LRH
Sbjct: 9   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 68

Query: 80  CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA----WQSLTWTQRISAA 135
            +++   G     YF D++  R++LI EY P GT+   +   +     ++ T+   ++ A
Sbjct: 69  PNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANA 121

Query: 136 IGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 174
                 + + H+     V   ++K  ++LL      KI+
Sbjct: 122 ------LSYCHS---KRVIHRDIKPENLLLGSAGELKIA 151

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 40/167 (23%)

Query: 33  GEGSKGQMYRGRLKNG------TFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSAL 86
           GEG+ G+++     N         +A++ LK     + ++F    EL++ L+H H+V   
Sbjct: 24  GEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFY 83

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH--------------AWQSLTWTQRI 132
           G C +          + ++FEY+ +G L  ++  H              A   L  +Q +
Sbjct: 84  GVCGDG-------DPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQML 136

Query: 133 SAAIGVARGIQFLHTGIVPGVFSNN-----LKITDILLDQNLVAKIS 174
             A  +A G+ +L         S +     L   + L+  NL+ KI 
Sbjct: 137 HIASQIASGMVYLA--------SQHFVHRDLATRNCLVGANLLVKIG 175

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 58.7 bits (142), Expect = 1e-10
 Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 27/152 (17%)

Query: 33  GEGSKGQMYRGRLKNG----TFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALG 87
           GEG  G +++G   +       +AI+  K   S S R  F+     + +  H H+V  +G
Sbjct: 399 GEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIG 458

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT 147
              E        + +++I E    G LRS++      SL     I  A  ++  + +L  
Sbjct: 459 VITE--------NPVWIIMELCTLGELRSFLQVRK-FSLDLASLILYAYQLSTALAYLE- 508

Query: 148 GIVPGVFSNN-----LKITDILLDQNLVAKIS 174
                  S       +   ++L+  N   K+ 
Sbjct: 509 -------SKRFVHRDIAARNVLVSSNDCVKLG 533

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 28/153 (18%), Positives = 59/153 (38%), Gaps = 28/153 (18%)

Query: 33  GEGSKGQMYRGRLK-----NGTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSAL 86
           G G  G +++G            + I+ ++ K    +      H+  I  L H H+V  L
Sbjct: 22  GSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLL 81

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
           G C          S + L+ +Y+P G+L   +  H   +L     ++  + +A+G+ +L 
Sbjct: 82  GLCPG--------SSLQLVTQYLPLGSLLDHVRQHR-GALGPQLLLNWGVQIAKGMYYLE 132

Query: 147 TGIVPGVFSNNLKITD-----ILLDQNLVAKIS 174
                    + +   +     +LL      +++
Sbjct: 133 --------EHGMVHRNLAARNVLLKSPSQVQVA 157

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 26/152 (17%)

Query: 33  GEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALG 87
           G G  G++  GRL+        +AI+ LK   +   R +F+    ++ +  H +++   G
Sbjct: 58  GSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEG 117

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT 147
                           ++ EY+ NG+L +++  H     T  Q +    GV  G+++L  
Sbjct: 118 VVTRG-------RLAMIVTEYMENGSLDTFLRTHD-GQFTIMQLVGMLRGVGAGMRYLS- 168

Query: 148 GIVPGVFSNN-----LKITDILLDQNLVAKIS 174
                          L   ++L+D NLV K+S
Sbjct: 169 -------DLGYVHRDLAARNVLVDSNLVCKVS 193

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 41/168 (24%)

Query: 33  GEGSKGQMYRGRLKNG------TFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSA 85
           GE   G++Y+G L           +AI+ LK K     R  F H   L ++L+H ++V  
Sbjct: 18  GEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCL 77

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH--------------AWQSLTWTQR 131
           LG   +   D      + +IF Y  +G L  ++                    +L     
Sbjct: 78  LGVVTK---DQP----LSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDF 130

Query: 132 ISAAIGVARGIQFLHTGIVPGVFSNN-----LKITDILLDQNLVAKIS 174
           +     +A G+++L         S++     L   ++L+   L  KIS
Sbjct: 131 VHLVAQIAAGMEYLS--------SHHVVHKDLATRNVLVYDKLNVKIS 170

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 29/152 (19%), Positives = 57/152 (37%), Gaps = 27/152 (17%)

Query: 33  GEGSKGQMYRGRLKNG----TFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALG 87
           GEG  G++Y G   N       +A++  K   +   +  FM    ++  L H H+V  +G
Sbjct: 21  GEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIG 80

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT 147
                          ++I E  P G L  ++  +   SL     +  ++ + + + +L  
Sbjct: 81  II--------EEEPTWIIMELYPYGELGHYLERNK-NSLKVLTLVLYSLQICKAMAYLE- 130

Query: 148 GIVPGVFSNN-----LKITDILLDQNLVAKIS 174
                  S N     + + +IL+      K+ 
Sbjct: 131 -------SINCVHRDIAVRNILVASPECVKLG 155

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 56.5 bits (137), Expect = 5e-10
 Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 26/160 (16%)

Query: 24  NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHH----IELISKLR 78
           ++FD    +G+G  G +Y  R  +N   +A++ L  K         H     IE+ S LR
Sbjct: 14  DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLF-KSQLEKEGVEHQLRREIEIQSHLR 72

Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA----WQSLTWTQRISA 134
           H +++         YF D    RI+L+ E+ P G L   +  H      +S T+ + ++ 
Sbjct: 73  HPNILRMYN-----YFHDRK--RIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELAD 125

Query: 135 AIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 174
           A      + + H      V   ++K  ++L+      KI+
Sbjct: 126 A------LHYCHE---RKVIHRDIKPENLLMGYKGELKIA 156

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 56.1 bits (136), Expect = 7e-10
 Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 27/152 (17%)

Query: 33  GEGSKGQMYRGRLKNG----TFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALG 87
           GEG  G +++G   +       +AI+  K   S S R  F+     + +  H H+V  +G
Sbjct: 24  GEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIG 83

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT 147
              E        + +++I E    G LRS++      SL     I  A  ++  + +L  
Sbjct: 84  VITE--------NPVWIIMELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTALAYLE- 133

Query: 148 GIVPGVFSNN-----LKITDILLDQNLVAKIS 174
                  S       +   ++L+  N   K+ 
Sbjct: 134 -------SKRFVHRDIAARNVLVSSNDCVKLG 158

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 56.5 bits (136), Expect = 7e-10
 Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 26/151 (17%)

Query: 33  GEGSKGQMYRGRLKNG---TFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSALGH 88
           G G+ G + +G  +       +AI+ LK     +     M   +++ +L + ++V  +G 
Sbjct: 345 GCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGV 404

Query: 89  CFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTG 148
           C            + L+ E    G L  ++ G   + +  +        V+ G+++L   
Sbjct: 405 C--------QAEALMLVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLE-- 453

Query: 149 IVPGVFSNN-----LKITDILLDQNLVAKIS 174
                   N     L   ++LL     AKIS
Sbjct: 454 ------EKNFVHRNLAARNVLLVNRHYAKIS 478

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 56.2 bits (136), Expect = 8e-10
 Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 27/153 (17%)

Query: 33  GEGSKGQMYRGRLKNGTF-----IAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           G G  G++Y+G LK  +      +AI+ LK   +   R +F+    ++ +  H +++   
Sbjct: 53  GAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLE 112

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
           G         S    + +I EY+ NG L  ++        +  Q +    G+A G+++L 
Sbjct: 113 GVI-------SKYKPMMIITEYMENGALDKFLREKD-GEFSVLQLVGMLRGIAAGMKYLA 164

Query: 147 TGIVPGVFSNN-----LKITDILLDQNLVAKIS 174
                   + N     L   +IL++ NLV K+S
Sbjct: 165 --------NMNYVHRDLAARNILVNSNLVCKVS 189

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 56.2 bits (136), Expect = 8e-10
 Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 53/178 (29%)

Query: 33  GEGSKGQMYRGRLKNG------TFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSA 85
           GEG+ G++++ R          T +A++ LK + S   +  F     L+++  + ++V  
Sbjct: 56  GEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKL 115

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW----------------------ISGHAW 123
           LG C            + L+FEY+  G L  +                      +S    
Sbjct: 116 LGVCAV---GKP----MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGP 168

Query: 124 QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT--D-----ILLDQNLVAKIS 174
             L+  +++  A  VA G+ +L          +  K    D      L+ +N+V KI+
Sbjct: 169 PPLSCAEQLCIARQVAAGMAYL----------SERKFVHRDLATRNCLVGENMVVKIA 216

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 51/174 (29%)

Query: 33  GEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHST----RNFMHHIELISKL-RHCH 81
           G G+ GQ+                +A+   KM K  +T    R  M  ++++  +  H +
Sbjct: 36  GRGAFGQVIEADAFGIDKTATCRTVAV---KMLKEGATHSEHRALMSELKILIHIGHHLN 92

Query: 82  LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH--------------AWQSLT 127
           +V+ LG C +          + +I E+   G L +++                     LT
Sbjct: 93  VVNLLGACTK------PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLT 146

Query: 128 WTQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT--D-----ILLDQNLVAKIS 174
               I  +  VA+G++FL           + K    D     ILL +  V KI 
Sbjct: 147 LEHLICYSFQVAKGMEFL----------ASRKCIHRDLAARNILLSEKNVVKIC 190

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 32/160 (20%), Positives = 74/160 (46%), Gaps = 25/160 (15%)

Query: 24  NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCL---KMKKSHSTRNFMHHIELISKLRH 79
            +F     +G+GS   +YR   +  G  +AI+ +    M K+   +   + +++  +L+H
Sbjct: 11  EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKH 70

Query: 80  CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA-----WQSLTWTQRISA 134
             ++         YF+DS+   ++L+ E   NG +  ++          ++  +  +I  
Sbjct: 71  PSILE-----LYNYFEDSN--YVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQI-- 121

Query: 135 AIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 174
                 G+ +LH+    G+   +L ++++LL +N+  KI+
Sbjct: 122 ----ITGMLYLHS---HGILHRDLTLSNLLLTRNMNIKIA 154

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 40/167 (23%)

Query: 33  GEGSKGQMYRGRLK------NGTFIAIRCLKMKKSHSTRN-FMHHIELISKL-RHCHLVS 84
           G G+ G++                +A++ LK       +   M  ++++S L +H ++V+
Sbjct: 55  GAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVN 114

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW------------ISGHAWQSLTWTQRI 132
            LG C       +    + +I EY   G L ++                A  + +    +
Sbjct: 115 LLGAC-------THGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLL 167

Query: 133 SAAIGVARGIQFLHTGIVPGVFSNNLKITD-----ILLDQNLVAKIS 174
             +  VA+G+ FL         S N    D     +LL    VAKI 
Sbjct: 168 HFSSQVAQGMAFLA--------SKNCIHRDVAARNVLLTNGHVAKIG 206

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 30/153 (19%)

Query: 33  GEGSKGQMYRGRLKNG---TFIAIRCLK---MKKSHSTRNFMHHIELISKLRHCHLVSAL 86
           G G+ G + +G  +       +A++ LK      +      +    ++ +L + ++V  +
Sbjct: 26  GSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPA-LKDELLAEANVMQQLDNPYIVRMI 84

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
           G C              L+ E    G L  ++  +  + +     I     V+ G+++L 
Sbjct: 85  GIC--------EAESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLE 134

Query: 147 TGIVPGVFSNN-----LKITDILLDQNLVAKIS 174
                    +N     L   ++LL     AKIS
Sbjct: 135 --------ESNFVHRDLAARNVLLVTQHYAKIS 159

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 31/173 (17%), Positives = 66/173 (38%), Gaps = 40/173 (23%)

Query: 23  TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH 81
            ++F+  A +G+G+ GQ+ + R   +  + AI+ ++  +       +  + L++ L H +
Sbjct: 5   ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEE-KLSTILSEVMLLASLNHQY 63

Query: 82  LVSALGHCFECYFDDS----------SVSRIFLIFEYVPNGTLRSWISGHAW-----QSL 126
           +V      +  + +              S +F+  EY  NGTL   I          +  
Sbjct: 64  VV----RYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYW 119

Query: 127 TWTQRISAAIGVARGIQFLHTGIVPGVFSNN-----LKITDILLDQNLVAKIS 174
              ++I         + ++H        S       LK  +I +D++   KI 
Sbjct: 120 RLFRQI------LEALSYIH--------SQGIIHRDLKPMNIFIDESRNVKIG 158

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 54.4 bits (131), Expect = 3e-09
 Identities = 23/165 (13%), Positives = 61/165 (36%), Gaps = 33/165 (20%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHH-----------------IELIS 75
            +G   ++     K+  F A++  +       R+F                    +++I+
Sbjct: 40  NQGKFNKIILCE-KDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIIT 98

Query: 76  KLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAA 135
            +++ + +     C      +     +++I+EY+ N ++  +          +T  I   
Sbjct: 99  DIKNEYCL----TCEG-IITNYD--EVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQ 151

Query: 136 IG------VARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 174
           +       V     ++H      +   ++K ++IL+D+N   K+S
Sbjct: 152 VIKCIIKSVLNSFSYIHNEK--NICHRDVKPSNILMDKNGRVKLS 194

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 30/161 (18%)

Query: 25  NFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCL---KMKKSHSTRNFMHHIELISKLRHC 80
            +    F+G+G   + +           A + +    + K H        I +   L H 
Sbjct: 42  RYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQ 101

Query: 81  HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLT-------WTQRIS 133
           H+V      F  +F+D+    +F++ E     +L         ++LT         Q + 
Sbjct: 102 HVVG-----FHGFFEDND--FVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVL 152

Query: 134 AAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 174
                    Q+LH      V   +LK+ ++ L+++L  KI 
Sbjct: 153 G-------CQYLHR---NRVIHRDLKLGNLFLNEDLEVKIG 183

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 32/197 (16%), Positives = 78/197 (39%), Gaps = 32/197 (16%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHH-IELISKLRHCH 81
            +F+    +G G  G ++  + K +    AI+ +++      R  +   ++ ++KL H  
Sbjct: 5   TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 64

Query: 82  LVSALGHCFECYFDDSSVSR---------IFLIFEYVPNGTLRSWISGHAWQSLTWTQRI 132
           +V      F  + + ++  +         +++  +      L+ W++G            
Sbjct: 65  IV----RYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVC 120

Query: 133 -SAAIGVARGIQFLHT-GIV-----PG-VF---SNNLKITDI----LLDQNLVAKISSYN 177
               + +A  ++FLH+ G++     P  +F    + +K+ D      +DQ+   +     
Sbjct: 121 LHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTP 180

Query: 178 LPLLAENAEKVGHVTPY 194
           +P  A +  +VG  T  
Sbjct: 181 MPAYARHTGQVG--TKL 195

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 53.4 bits (129), Expect = 8e-09
 Identities = 34/173 (19%), Positives = 70/173 (40%), Gaps = 48/173 (27%)

Query: 33  GEGSKGQMYRGRL--------KNGTFIAIRCLKMKKSHSTRN-FMHHIELISKL-RHCHL 82
           GEG+ GQ+             K    +A++ LK   +    +  +  +E++  + +H ++
Sbjct: 44  GEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNI 103

Query: 83  VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW--------------ISGHAWQSLTW 128
           ++ LG C +          +++I EY   G LR +              I+    + +T+
Sbjct: 104 INLLGACTQD-------GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTF 156

Query: 129 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT--D-----ILLDQNLVAKIS 174
              +S    +ARG+++L           + K    D     +L+ +N V KI+
Sbjct: 157 KDLVSCTYQLARGMEYL----------ASQKCIHRDLAARNVLVTENNVMKIA 199

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 53.0 bits (128), Expect = 8e-09
 Identities = 36/181 (19%), Positives = 69/181 (38%), Gaps = 59/181 (32%)

Query: 33  GEGSKGQMYRGRLKNG------TFIAIRCLKMKKSHST----RNFMHHIELISKLRHCHL 82
           GEG  G++ +    +       T +A+   KM K +++    R+ +    ++ ++ H H+
Sbjct: 32  GEGEFGKVVKATAFHLKGRAGYTTVAV---KMLKENASPSELRDLLSEFNVLKQVNHPHV 88

Query: 83  VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW----------------------ISG 120
           +   G C +          + LI EY   G+LR +                      +  
Sbjct: 89  IKLYGACSQD-------GPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDH 141

Query: 121 HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT--D-----ILLDQNLVAKI 173
              ++LT    IS A  +++G+Q+L            +K+   D     IL+ +    KI
Sbjct: 142 PDERALTMGDLISFAWQISQGMQYL----------AEMKLVHRDLAARNILVAEGRKMKI 191

Query: 174 S 174
           S
Sbjct: 192 S 192

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 30/161 (18%)

Query: 25  NFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCL---KMKKSHSTRNFMHHIELISKLRHC 80
            +    F+G+G   + +           A + +    + K H        I +   L H 
Sbjct: 16  RYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQ 75

Query: 81  HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLT-------WTQRIS 133
           H+V      F  +F+D+    +F++ E     +L         ++LT         Q + 
Sbjct: 76  HVVG-----FHGFFEDND--FVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVL 126

Query: 134 AAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 174
                    Q+LH      V   +LK+ ++ L+++L  KI 
Sbjct: 127 G-------CQYLHR---NRVIHRDLKLGNLFLNEDLEVKIG 157

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 48/173 (27%)

Query: 33  GEGSKGQMYRGRL--------KNGTFIAIRCLKMKKSHSTRN-FMHHIELISKL-RHCHL 82
           GEG  GQ+             K    +A++ LK   +    +  +  +E++  + +H ++
Sbjct: 90  GEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNI 149

Query: 83  VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW--------------ISGHAWQSLTW 128
           ++ LG C +   D      +++I EY   G LR +              I+    + +T+
Sbjct: 150 INLLGACTQ---DGP----LYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTF 202

Query: 129 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT--D-----ILLDQNLVAKIS 174
              +S    +ARG+++L           + K    D     +L+ +N V KI+
Sbjct: 203 KDLVSCTYQLARGMEYL----------ASQKCIHRDLAARNVLVTENNVMKIA 245

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 33/173 (19%), Positives = 59/173 (34%), Gaps = 48/173 (27%)

Query: 33  GEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHSTRN-FMHHIELISKL-RHCHLVS 84
           G G+ G++                +A++ LK     + R   M  ++++S L  H ++V+
Sbjct: 32  GAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVN 91

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH----------------AWQSLTW 128
            LG C       +      +I EY   G L +++                      +L  
Sbjct: 92  LLGAC-------TIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDL 144

Query: 129 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT--D-----ILLDQNLVAKIS 174
              +S +  VA+G+ FL           +      D     ILL    + KI 
Sbjct: 145 EDLLSFSYQVAKGMAFL----------ASKNCIHRDLAARNILLTHGRITKIC 187

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 37/178 (20%), Positives = 63/178 (35%), Gaps = 53/178 (29%)

Query: 33  GEGSKGQMYRGRLKNG------TFIAIRCLKMKKSHSTRN-FMHHIELISKL-RHCHLVS 84
           G G+ G++                +A++ LK K   S R   M  ++++++L  H ++V+
Sbjct: 54  GSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVN 113

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH---------------------AW 123
            LG C            I+LIFEY   G L +++                          
Sbjct: 114 LLGACTL---SGP----IYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDL 166

Query: 124 QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT--D-----ILLDQNLVAKIS 174
             LT+   +  A  VA+G++FL                  D     +L+    V KI 
Sbjct: 167 NVLTFEDLLCFAYQVAKGMEFL----------EFKSCVHRDLAARNVLVTHGKVVKIC 214

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 51.2 bits (122), Expect = 6e-08
 Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 12/149 (8%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCF 90
           G G  G + R      G  +AI+  + + S   R  +   I+++ KL H ++V +     
Sbjct: 23  GTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVV-SAREVP 81

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA-WQSLTWTQRISAAIGVARGIQFLHT-G 148
           +     +      L  EY   G LR +++       L      +    ++  +++LH   
Sbjct: 82  DGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENR 141

Query: 149 IVPGVFSNNLKITDILLD---QNLVAKIS 174
           I+      +LK  +I+L    Q L+ KI 
Sbjct: 142 IIH----RDLKPENIVLQPGPQRLIHKII 166

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 35/171 (20%), Positives = 69/171 (40%), Gaps = 44/171 (25%)

Query: 33  GEGSKGQMYRGRLKN--------GTFIAIRCLKMKKSHSTRN-FMHHIELISKL-RHCHL 82
           GEG+ GQ+                T +A++ LK   +    +  +  +E++  + +H ++
Sbjct: 78  GEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNI 137

Query: 83  VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW--------------ISGHAWQSLTW 128
           ++ LG C +          +++I EY   G LR +               S +  + L+ 
Sbjct: 138 INLLGACTQD-------GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSS 190

Query: 129 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKITD-----ILLDQNLVAKIS 174
              +S A  VARG+++L         S      D     +L+ ++ V KI+
Sbjct: 191 KDLVSCAYQVARGMEYLA--------SKKCIHRDLAARNVLVTEDNVMKIA 233

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 24/148 (16%)

Query: 33  GEGSKGQMYRGRLK-NGTFIAIRCL-KMKKSHSTRNFMHHIELISKLRHCHLVSALGHCF 90
           G+G+   ++RGR K  G   AI+    +         M   E++ KL H ++V      F
Sbjct: 18  GQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKL----F 73

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAI--GVARGIQFLHT- 147
               + ++     LI E+ P G+L + +   +  +    +     +   V  G+  L   
Sbjct: 74  AIEEETTT-RHKVLIMEFCPCGSLYTVLEEPS-NAYGLPESEFLIVLRDVVGGMNHLREN 131

Query: 148 GIV-------------PGVFSNNLKITD 162
           GIV                  +  K+TD
Sbjct: 132 GIVHRNIKPGNIMRVIGEDGQSVYKLTD 159

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 4/144 (2%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCF 90
            EG    +Y  + + +G   A++ L   +    R  +  +  + KL  H ++V       
Sbjct: 37  AEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAAS 96

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRI-SAAIGVARGIQFLHTGI 149
               +  +    FL+   +  G L  ++     +       +        R +Q +H   
Sbjct: 97  IGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHR-Q 155

Query: 150 VPGVFSNNLKITDILLDQNLVAKI 173
            P +   +LK+ ++LL      K+
Sbjct: 156 KPPIIHRDLKVENLLLSNQGTIKL 179

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 24/148 (16%)

Query: 33  GEGSKGQMYRGRLK-NGTFIAIRCL-KMKKSHSTRNFMHHIELISKLRHCHLVSALGHCF 90
           G+G+   ++RGR K  G   AI+    +         M   E++ KL H ++V      F
Sbjct: 18  GQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKL----F 73

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAI--GVARGIQFLHT- 147
               + ++     LI E+ P G+L + +   +  +    +     +   V  G+  L   
Sbjct: 74  AIEEETTT-RHKVLIMEFCPCGSLYTVLEEPS-NAYGLPESEFLIVLRDVVGGMNHLREN 131

Query: 148 GIV-------------PGVFSNNLKITD 162
           GIV                  +  K+TD
Sbjct: 132 GIVHRNIKPGNIMRVIGEDGQSVYKLTD 159

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 35/169 (20%)

Query: 24  NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL 82
            +F     +G G  GQ+++ +   +G    I+ +K             ++ ++KL H ++
Sbjct: 11  MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNI 66

Query: 83  VSALGHCFECYFDDSSVS-------------RIFLIFEYVPNGTLRSWISGHAWQSLTWT 129
           V    H   C+                     +F+  E+   GTL  WI     + L   
Sbjct: 67  V----HYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKV 122

Query: 130 QRISAAIGVARGIQFLHTGIVPGVFSNN-----LKITDILLDQNLVAKI 173
             +     + +G+ ++H        S       LK ++I L      KI
Sbjct: 123 LALELFEQITKGVDYIH--------SKKLINRDLKPSNIFLVDTKQVKI 163

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 20/124 (16%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCHLVSALGHC 89
           G GS   +Y+G   +    +A   L+ +K   +  + F    E++  L+H ++V      
Sbjct: 35  GRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSW 94

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISGH------AWQSLTWTQRISAAIGVARGIQ 143
                       I L+ E + +GTL++++           +S  W ++I       +G+Q
Sbjct: 95  ESTVKGKK---CIVLVTELMTSGTLKTYLKRFKVMKIKVLRS--WCRQI------LKGLQ 143

Query: 144 FLHT 147
           FLHT
Sbjct: 144 FLHT 147

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 24/146 (16%), Positives = 56/146 (38%), Gaps = 18/146 (12%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRC--LKMKKSHSTRNFMHHIELISKLRHCHL-VSALGHC 89
           G G   ++++   +     AI+   L+   + +  ++ + I  ++KL+     +  L   
Sbjct: 18  GSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL--- 74

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT-G 148
           ++    D     I+++ E   N  L SW+           +     +     +  +H  G
Sbjct: 75  YDYEITD---QYIYMVMECG-NIDLNSWLKKKKSIDPWERKSYWKNM--LEAVHTIHQHG 128

Query: 149 IVPGVFSNNLKITDILLDQNLVAKIS 174
           IV      +LK  + L+   ++ K+ 
Sbjct: 129 IVHS----DLKPANFLIVDGML-KLI 149

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 23/147 (15%), Positives = 54/147 (36%), Gaps = 20/147 (13%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRC--LKMKKSHSTRNFMHHIELISKLRH--CHLVSALGH 88
           G G   ++++   +     AI+   L+   + +  ++ + I  ++KL+     ++     
Sbjct: 37  GSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYD- 95

Query: 89  CFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT- 147
               Y        I+++ E   N  L SW+           +     +     +  +H  
Sbjct: 96  ----YEITD--QYIYMVMECG-NIDLNSWLKKKKSIDPWERKSYWKNM--LEAVHTIHQH 146

Query: 148 GIVPGVFSNNLKITDILLDQNLVAKIS 174
           GIV      +LK  + L+   ++ K+ 
Sbjct: 147 GIVHS----DLKPANFLIVDGML-KLI 168

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 47.7 bits (113), Expect = 8e-07
 Identities = 27/166 (16%), Positives = 60/166 (36%), Gaps = 21/166 (12%)

Query: 17  EELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRC---LKMKKSHSTRNFMHHIEL 73
            E +  +        +GEG+  Q+Y     +      +    LK++K  +   F    +L
Sbjct: 58  TEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQL 117

Query: 74  ISKLR---HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI---SGHAWQSLT 127
           + +L+       +      +  +   +      L+ E    GTL + I        + + 
Sbjct: 118 MERLKPSMQHMFM----KFYSAHLFQN---GSVLVGELYSYGTLLNAINLYKNTPEKVMP 170

Query: 128 WTQRISAAIGVARGIQFLHT-GIVPGVFSNNLKITDILLDQNLVAK 172
               IS A+ +   I+ +H   I+ G    ++K  + +L    + +
Sbjct: 171 QGLVISFAMRMLYMIEQVHDCEIIHG----DIKPDNFILGNGFLEQ 212

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 47.5 bits (113), Expect = 8e-07
 Identities = 24/146 (16%), Positives = 56/146 (38%), Gaps = 18/146 (12%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRC--LKMKKSHSTRNFMHHIELISKLRH-CHLVSALGHC 89
           G G   ++++   +     AI+   L+   + +  ++ + I  ++KL+     +  L   
Sbjct: 65  GSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL--- 121

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT-G 148
           ++    D     I+++ E   N  L SW+           +     +     +  +H  G
Sbjct: 122 YDYEITD---QYIYMVMECG-NIDLNSWLKKKKSIDPWERKSYWKNM--LEAVHTIHQHG 175

Query: 149 IVPGVFSNNLKITDILLDQNLVAKIS 174
           IV      +LK  + L+   ++ K+ 
Sbjct: 176 IVHS----DLKPANFLIVDGML-KLI 196

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 27/175 (15%), Positives = 66/175 (37%), Gaps = 30/175 (17%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIR--CLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHC 89
           GEGS G+    +  ++G    I+   +    S         + +++ ++H ++V      
Sbjct: 33  GEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIV----QY 88

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGI 149
            E + ++ S   ++++ +Y   G L   I+          Q +   + +   ++ +H   
Sbjct: 89  RESFEENGS---LYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH--- 142

Query: 150 VPGVFSNN-----LKITDILLDQNLVAKISSYNLP-LLAENAEK----VGHVTPY 194
                        +K  +I L ++   ++  + +  +L    E     +G  TPY
Sbjct: 143 -----DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIG--TPY 190

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 13/100 (13%)

Query: 18  ELEEATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISK 76
           E  E  +       +G GS G+++R +  + G   A++ ++++        +  +   + 
Sbjct: 52  EYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR-----VEELVACAG 106

Query: 77  LRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRS 116
           L    +V   G       +   V+ IF+  E +  G+L  
Sbjct: 107 LSSPRIVPLYG----AVREGPWVN-IFM--ELLEGGSLGQ 139

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 23/152 (15%), Positives = 58/152 (38%), Gaps = 26/152 (17%)

Query: 33  GEGSKGQMYRGR-LKNGTFIA---IRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGH 88
           G G   ++YR   L +G  +A   ++   +  + +  + +  I+L+ +L H +++     
Sbjct: 41  GRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIK---- 96

Query: 89  CFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQR--ISAAIGVARGIQFLH 146
            +  + +D+    + ++ E    G L   I     Q     +R      + +   ++ +H
Sbjct: 97  YYASFIEDNE---LNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH 153

Query: 147 TGIVPGVFSNN-----LKITDILLDQNLVAKI 173
                   S       +K  ++ +    V K+
Sbjct: 154 --------SRRVMHRDIKPANVFITATGVVKL 177

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 44.5 bits (105), Expect = 8e-06
 Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 33  GEGSKGQMYRGRL----KNGTFIAIRCLKMKKSHS---TRNFMHHIELISKL-RHCHLVS 84
           G G+ GQ+         K  T   +    +K+  +    R  M  ++++  +  H ++V+
Sbjct: 31  GRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN 90

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH 121
            LG C +          + +I E+   G L +++   
Sbjct: 91  LLGACTK------PGGPLMVIVEFCKFGNLSTYLRSK 121

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 12/148 (8%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKK-SHSTRNFMHH-IELISKLRHCHLVSALGHC 89
           G GS G+  + R   +G  +  + L     + + +  +   + L+ +L+H ++V      
Sbjct: 15  GTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVR----Y 70

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQR--ISAAIGVARGIQFLHT 147
           ++   D ++ + ++++ EY   G L S I+    +     +   +     +   ++  H 
Sbjct: 71  YDRIIDRTN-TTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHR 129

Query: 148 GIVPG--VFSNNLKITDILLDQNLVAKI 173
               G  V   +LK  ++ LD     K+
Sbjct: 130 RSDGGHTVLHRDLKPANVFLDGKQNVKL 157

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 23/193 (11%), Positives = 47/193 (24%), Gaps = 46/193 (23%)

Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-------------------------AIRCL 56
            T        +GEG  G++++    +                              I   
Sbjct: 18  PTEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIIS 77

Query: 57  KMKKSHSTRNFMHHIELISKLRHCHLV-----SALGHCFECY----------FDDSSVSR 101
           K     S        E    L   H V       L   ++ Y           D     +
Sbjct: 78  KELSLLSGEVCNRT-EGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQ 136

Query: 102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT 161
           +F++ E+   G     +     +  +     S    +   +              +L   
Sbjct: 137 LFIVLEFEFGGIDLEQMR---TKLSSLATAKSILHQLTASLAVAEA--SLRFEHRDLHWG 191

Query: 162 DILLDQNLVAKIS 174
           ++LL +  + K+ 
Sbjct: 192 NVLLKKTSLKKLH 204

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 21/143 (14%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMH-HIELISKLRHCHLVSALGHCFE 91
           G GS G +++ +L     +AI     KK    + F +  ++++  ++H ++V  L   F 
Sbjct: 49  GNGSFGVVFQAKLVESDEVAI-----KKVLQDKRFKNRELQIMRIVKHPNVVD-LKAFFY 102

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIG------VARGIQFL 145
              D      + L+ EYVP  T+      +A       Q +   +       + R + ++
Sbjct: 103 SNGDKKDEVFLNLVLEYVPE-TVYRASRHYAKL----KQTMPMLLIKLYMYQLLRSLAYI 157

Query: 146 HTGIVPGVFSNNLKITDILLDQN 168
           H+    G+   ++K  ++LLD  
Sbjct: 158 HSI---GICHRDIKPQNLLLDPP 177

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 29/145 (20%), Positives = 68/145 (46%), Gaps = 18/145 (12%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G+G+ G +Y    +  G  +AIR + +++       ++ I ++ + ++ ++V+ L     
Sbjct: 29  GQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLD---- 84

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAI--GVARGIQFLHTGI 149
            Y        ++++ EY+  G+L   ++      +   Q I AA+     + ++FLH+  
Sbjct: 85  SYLVG---DELWVVMEYLAGGSLTDVVTET---CMDEGQ-I-AAVCRECLQALEFLHSN- 135

Query: 150 VPGVFSNNLKITDILLDQNLVAKIS 174
              V   ++K  +ILL  +   K++
Sbjct: 136 --QVIHRDIKSDNILLGMDGSVKLT 158

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 29/147 (19%)

Query: 33  GEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G G+ G ++R   +  G   A + +              I+ +S LRH  LV+      +
Sbjct: 166 GTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVN----LHD 221

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVAR----GIQFLHT 147
            + DD+ +    +I+E++  G L   +   A +    ++    A+   R    G+  +H 
Sbjct: 222 AFEDDNEM---VMIYEFMSGGELFEKV---ADEHNKMSED--EAVEYMRQVCKGLCHMHE 273

Query: 148 -GIV-----PGVF------SNNLKITD 162
              V     P         SN LK+ D
Sbjct: 274 NNYVHLDLKPENIMFTTKRSNELKLID 300

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 27/145 (18%), Positives = 59/145 (40%), Gaps = 18/145 (12%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           GEGS G +   R   +G  +A++ + ++K        + + ++   +H ++V        
Sbjct: 54  GEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYK---- 109

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAI--GVARGIQFLHTGI 149
            Y        ++++ E++  G L   +       +   +   A +   V + + +LH   
Sbjct: 110 SYLVG---EELWVLMEFLQGGALTDIV-----SQVRLNEEQIATVCEAVLQALAYLHA-- 159

Query: 150 VPGVFSNNLKITDILLDQNLVAKIS 174
             GV   ++K   ILL  +   K+S
Sbjct: 160 -QGVIHRDIKSDSILLTLDGRVKLS 183

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 31/158 (19%), Positives = 63/158 (39%), Gaps = 36/158 (22%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHH----IELISKLRHCHLVSALG 87
           GEGS G++      +     A++ LK KK     N   +    I+L+ +LRH +++    
Sbjct: 14  GEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVI---- 69

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGT-----------LRSWISGHAWQSLTWTQRISAAI 136
              +  +++    +++++ EY   G                 +   +      Q I    
Sbjct: 70  QLVDVLYNEEK-QKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFC-----QLID--- 120

Query: 137 GVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 174
               G+++LH+    G+   ++K  ++LL      KIS
Sbjct: 121 ----GLEYLHS---QGIVHKDIKPGNLLLTTGGTLKIS 151

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 34/170 (20%), Positives = 77/170 (45%), Gaps = 23/170 (13%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G+G+ G++Y+ +  + G   A + ++ K      +++  IE+++   H ++V        
Sbjct: 28  GDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVK----LLG 83

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAI--GVARGIQFLHTGI 149
            Y+ D    +++++ E+ P G + + +     + LT  Q I   +   +   + FLH+  
Sbjct: 84  AYYHD---GKLWIMIEFCPGGAVDAIMLELD-RGLTEPQ-I-QVVCRQMLEALNFLHSK- 136

Query: 150 VPGVFSNNLKITDILLDQNLVAKI-----SSYNLPLLAENAEKVGHVTPY 194
              +   +LK  ++L+      ++     S+ NL  L +    +G  TPY
Sbjct: 137 --RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIG--TPY 182

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 32/144 (22%), Positives = 65/144 (45%), Gaps = 22/144 (15%)

Query: 33  GEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMH-HIELISKLRHCHLVSALGHCF 90
           G GS G +Y+ +L  +G  +AI     KK    + F +  ++++ KL HC++V  L + F
Sbjct: 63  GNGSFGVVYQAKLCDSGELVAI-----KKVLQDKRFKNRELQIMRKLDHCNIVR-LRYFF 116

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIG------VARGIQF 144
               +      + L+ +YVP  T+      ++       Q +           + R + +
Sbjct: 117 YSSGEKKDEVYLNLVLDYVPE-TVYRVARHYSRA----KQTLPVIYVKLYMYQLFRSLAY 171

Query: 145 LHTGIVPGVFSNNLKITDILLDQN 168
           +H+    G+   ++K  ++LLD +
Sbjct: 172 IHSF---GICHRDIKPQNLLLDPD 192

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 32/154 (20%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCL---KMKKSHSTRNFMHHIELISKLRHCHLVSALGH 88
           G G+ G++  G     G  +A++ L   K++           I+ +   RH H++     
Sbjct: 20  GVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHII----K 75

Query: 89  CFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVAR-------- 140
            ++     S+ +  F++ EYV  G L  +I  H         R+      AR        
Sbjct: 76  LYQVI---STPTDFFMVMEYVSGGELFDYICKH--------GRVE--EMEARRLFQQILS 122

Query: 141 GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 174
            + + H      V   +LK  ++LLD ++ AKI+
Sbjct: 123 AVDYCHRH---MVVHRDLKPENVLLDAHMNAKIA 153

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 33/149 (22%)

Query: 33  GEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G G  GQ+++      G  +A + +K +         + I ++++L H +L+      ++
Sbjct: 98  GGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQ----LYD 153

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWI--SGHAWQSLTWTQRISAAIGVAR----GIQFL 145
            +   + +    L+ EYV  G L   I    +       T+     I   +    GI+ +
Sbjct: 154 AFESKNDI---VLVMEYVDGGELFDRIIDESY-----NLTEL--DTILFMKQICEGIRHM 203

Query: 146 HT-GIV-----PGVF------SNNLKITD 162
           H   I+     P         +  +KI D
Sbjct: 204 HQMYILHLDLKPENILCVNRDAKQIKIID 232

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.98
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.98
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.98
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.98
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.98
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.98
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.98
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.98
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.98
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.98
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.98
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.98
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.98
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.98
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.98
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.98
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.98
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.98
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.98
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.98
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.98
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.98
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.98
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.98
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.98
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.98
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.98
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.98
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.97
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.97
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.97
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.97
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.97
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.97
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.97
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.97
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.97
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.97
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.97
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.97
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.97
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.97
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.97
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.97
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.97
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.97
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.97
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.97
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.97
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.97
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.97
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.97
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.97
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.97
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.97
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.97
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.97
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.97
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.97
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.97
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.97
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.97
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.97
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.97
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.97
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.97
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.97
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.97
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.97
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.97
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.97
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.97
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.97
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.97
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.97
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.97
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.97
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.97
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.97
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.97
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.97
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.97
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.97
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.97
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.97
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.97
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.97
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.97
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.97
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.97
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.97
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.97
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.97
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.97
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.97
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.97
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.97
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.97
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.97
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.97
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.97
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.97
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.97
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.97
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.97
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.97
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.97
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.97
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.97
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.97
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.97
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.97
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.97
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.97
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.97
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.97
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.97
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.97
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.97
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.96
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.96
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.96
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.96
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.96
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.96
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.96
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.96
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.96
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.96
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.96
3uqc_A	286	Probable conserved transmembrane protein; structur	99.95
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.95
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.95
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.95
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.94
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.9
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.83
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.54
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.45
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	99.25
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.92
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.85
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.76
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.76
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.75
3ats_A	357	Putative uncharacterized protein; hypothetical pro	98.59
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	98.59
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.56
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	98.33
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.14
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	98.12
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	98.03
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	98.02
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	97.94
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	97.88
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	97.71
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	97.69
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	97.63
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	97.47
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	97.43
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	97.35
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	97.07
3mes_A	424	Choline kinase; malaria, structural genomics, stru	96.79
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	92.28
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	85.33
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	82.13
1cja_A	342	Protein (actin-fragmin kinase); transferase; HET:	81.14
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	80.41

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=8.3e-44  Score=278.82  Aligned_cols=171  Identities=12%  Similarity=0.246  Sum_probs=145.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|++++.||+|+||.||+|.. .+|+.||+|++++..  ....+.+.+|+.++++++||||+++++++.+       .
T Consensus        23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~-------~   95 (350)
T 4b9d_A           23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEE-------N   95 (350)
T ss_dssp             CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-------T
T ss_pred             ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEE-------C
Confidence            47899999999999999999995 469999999997653  2345678899999999999999999999877       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +.+|+||||++||+|.+++..+.+..+++..++.++.|++.||.|||+   .+|+||||||+|||+++++.+||+|||+|
T Consensus        96 ~~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla  172 (350)
T 4b9d_A           96 GSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGIA  172 (350)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCGGGEEECTTCCEEECSTTEE
T ss_pred             CEEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHHHEEECCCCCEEEcccccc
Confidence            789999999999999999986655678999999999999999999999   79999999999999999999999999999


Q ss_pred             hhccccc-ccccccccccccCCCCC
Q 028725          180 LLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      +...... .....+||+.|||||..
T Consensus       173 ~~~~~~~~~~~~~~GT~~YmAPE~l  197 (350)
T 4b9d_A          173 RVLNSTVELARACIGTPYYLSPEIC  197 (350)
T ss_dssp             SCCCHHHHHHHHHHSCCTTCCHHHH
T ss_pred             eeecCCcccccccCCCccccCHHHH
Confidence            8876543 23446899999999964

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=2.7e-43  Score=271.85  Aligned_cols=168  Identities=18%  Similarity=0.305  Sum_probs=149.9

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .+|++++.||+|+||.||+|.. .+++.||+|++++.   .....+.+.+|+.+++.++||||+++++++.+       .
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-------~  104 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQD-------D  104 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-------S
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-------C
Confidence            5799999999999999999995 46999999999754   34567789999999999999999999998876       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +.+|+||||++||+|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||++++++.+||+|||+|
T Consensus       105 ~~~yivmEy~~gG~L~~~i~~~~--~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDlKPeNILl~~~g~vKl~DFGla  179 (311)
T 4aw0_A          105 EKLYFGLSYAKNGELLKYIRKIG--SFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTA  179 (311)
T ss_dssp             SEEEEEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTC
T ss_pred             CEEEEEEecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHeEEcCCCCEEEEEcCCc
Confidence            78999999999999999998654  79999999999999999999999   79999999999999999999999999999


Q ss_pred             hhccccc---ccccccccccccCCCCC
Q 028725          180 LLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      +......   .....+||+.|||||..
T Consensus       180 ~~~~~~~~~~~~~~~~GTp~YmAPEvl  206 (311)
T 4aw0_A          180 KVLSPESKQARANSFVGTAQYVSPELL  206 (311)
T ss_dssp             EECCTTTTCCCBCCCCSCGGGCCHHHH
T ss_pred             eecCCCCCcccccCcccCcccCCHHHH
Confidence            8775432   34456899999999963

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=5.9e-43  Score=273.62  Aligned_cols=167  Identities=16%  Similarity=0.337  Sum_probs=151.3

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      ..|++.+.||+|+||.||+|... +|+.||+|+++.......+.+.+|+.+++.++||||+++++++.+       .+.+
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~-------~~~~  146 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLV-------GDEL  146 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEE-------TTEE
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-------CCEE
Confidence            46999999999999999999964 699999999987777777888999999999999999999999987       6789


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      |+||||+++|+|.+++...   .+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+|+..
T Consensus       147 ~ivmEy~~gg~L~~~l~~~---~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~  220 (346)
T 4fih_A          147 WVVMEFLEGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQV  220 (346)
T ss_dssp             EEEECCCTTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEeCCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEECCCCCEEEecCcCceec
Confidence            9999999999999998763   58999999999999999999999   79999999999999999999999999999877


Q ss_pred             ccc-cccccccccccccCCCCC
Q 028725          183 ENA-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       183 ~~~-~~~~~~~~~~~~~aPE~~  203 (205)
                      ... ......+||+.|||||..
T Consensus       221 ~~~~~~~~~~~GTp~YmAPEvl  242 (346)
T 4fih_A          221 SKEVPRRKSLVGTPYWMAPELI  242 (346)
T ss_dssp             CSSSCCBCCCCSCGGGCCHHHH
T ss_pred             CCCCCcccccccCcCcCCHHHH
Confidence            654 344567999999999964

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=1.8e-42  Score=263.62  Aligned_cols=168  Identities=18%  Similarity=0.297  Sum_probs=133.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .++|++.+.||+|+||.||+|.. .+|+.||+|++++..   ......+.+|+.+++.++||||+++++++.+       
T Consensus        12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-------   84 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKS-------   84 (275)
T ss_dssp             --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEEC-------
T ss_pred             eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE-------
Confidence            47899999999999999999995 469999999997653   3345678999999999999999999998876       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      .+.+|+||||+ +|+|.+++..+.  .+++..+..++.|++.||.|||+   .+|+||||||+||++++++.+||+|||+
T Consensus        85 ~~~~~ivmEy~-~g~L~~~l~~~~--~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDiKP~NILl~~~~~vkl~DFGl  158 (275)
T 3hyh_A           85 KDEIIMVIEYA-GNELFDYIVQRD--KMSEQEARRFFQQIISAVEYCHR---HKIVHRDLKPENLLLDEHLNVKIADFGL  158 (275)
T ss_dssp             SSEEEEEEECC-CEEHHHHHHHSC--SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCTTTEEECTTCCEEECCSSC
T ss_pred             CCEEEEEEeCC-CCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCcccccCChHHeEECCCCCEEEeecCC
Confidence            67899999999 679999987654  79999999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |+...........+||+.|||||..
T Consensus       159 a~~~~~~~~~~~~~GT~~Y~APE~~  183 (275)
T 3hyh_A          159 SNIMTDGNFLKTSCGSPNYAAPEVI  183 (275)
T ss_dssp             C---------------CTTSCHHHH
T ss_pred             CeecCCCCccCCeeECcccCChhhh
Confidence            9988776666667999999999964

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=2.1e-42  Score=276.64  Aligned_cols=167  Identities=16%  Similarity=0.337  Sum_probs=151.5

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      +.|++.+.||+|+||.||+|... +|+.||+|+++.......+.+.+|+.+++.++||||+++++++.+       .+.+
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~-------~~~~  223 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLV-------GDEL  223 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEE-------TTEE
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEE-------CCEE
Confidence            56999999999999999999964 699999999987777777889999999999999999999999987       6789


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      |+||||++||+|.+++...   .+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+|+..
T Consensus       224 ~iVmEy~~gG~L~~~i~~~---~l~e~~~~~~~~qil~aL~ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~  297 (423)
T 4fie_A          224 WVVMEFLEGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQV  297 (423)
T ss_dssp             EEEEECCTTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSTTTEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEeCCCCCcHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHH---CCeecccCCHHHEEEcCCCCEEEecCccceEC
Confidence            9999999999999998753   58999999999999999999999   79999999999999999999999999999876


Q ss_pred             ccc-cccccccccccccCCCCC
Q 028725          183 ENA-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       183 ~~~-~~~~~~~~~~~~~aPE~~  203 (205)
                      ... ......+||+.|||||..
T Consensus       298 ~~~~~~~~~~~GTp~YmAPEvl  319 (423)
T 4fie_A          298 SKEVPRRKSLVGTPYWMAPELI  319 (423)
T ss_dssp             CSSCCCBCCCEECTTTCCHHHH
T ss_pred             CCCCccccccccCcCcCCHHHH
Confidence            554 344567999999999964

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=1.8e-42  Score=267.18  Aligned_cols=171  Identities=23%  Similarity=0.429  Sum_probs=146.5

Q ss_pred             hcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      .++|.+.+.||+|+||.||+|.+.      ++..||+|+++.......+.|.+|+.++++++||||++++++|.+     
T Consensus        12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~-----   86 (299)
T 4asz_A           12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVE-----   86 (299)
T ss_dssp             GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----
T ss_pred             HHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEee-----
Confidence            467899999999999999999864      477899999986655567789999999999999999999999976     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccC-----------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEe
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGH-----------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL  165 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~-----------~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv  165 (205)
                        .+..++||||+++|+|.+++...           ....+++..+..++.|++.||.|||+   .+|+||||||+||++
T Consensus        87 --~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NILl  161 (299)
T 4asz_A           87 --GDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLV  161 (299)
T ss_dssp             --SSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEE
T ss_pred             --CCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCccCHhhEEE
Confidence              66899999999999999999643           23468999999999999999999999   799999999999999


Q ss_pred             CCCCceeEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          166 DQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       166 ~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      ++++.+||+|||+|+.......   .....||+.|||||..
T Consensus       162 ~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~  202 (299)
T 4asz_A          162 GENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESI  202 (299)
T ss_dssp             CGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHH
T ss_pred             CCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHH
Confidence            9999999999999987655432   2334789999999963

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=1e-41  Score=266.12  Aligned_cols=171  Identities=23%  Similarity=0.390  Sum_probs=140.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      .+++.+.+.||+|+||.||+|.++      ++..||+|+++.......+.|.+|+.++++++||||++++++|.+     
T Consensus        40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~-----  114 (329)
T 4aoj_A           40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTE-----  114 (329)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----
T ss_pred             HHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----
Confidence            356778899999999999999864      477899999986665667789999999999999999999999976     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCC-------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccE
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHA-------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDI  163 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~-------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~ni  163 (205)
                        ...+++||||+++|+|.+++....             ...+++..++.++.|++.||.|||+   .+|+||||||+||
T Consensus       115 --~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLKp~NI  189 (329)
T 4aoj_A          115 --GRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATRNC  189 (329)
T ss_dssp             --SSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGE
T ss_pred             --CCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhc---CCeecccccHhhE
Confidence              667999999999999999987432             2358999999999999999999999   7999999999999


Q ss_pred             EeCCCCceeEcCCCchhhccccc---ccccccccccccCCCCC
Q 028725          164 LLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       164 lv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      ++++++.+||+|||+|+......   ......||+.|||||..
T Consensus       190 Ll~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~  232 (329)
T 4aoj_A          190 LVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESI  232 (329)
T ss_dssp             EEETTTEEEECCCC----------------CCCCGGGCCHHHH
T ss_pred             EECCCCcEEEcccccceeccCCCcceecCcccccccccChhhh
Confidence            99999999999999998765433   22345799999999964

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=2.2e-41  Score=262.08  Aligned_cols=171  Identities=23%  Similarity=0.317  Sum_probs=145.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      ..++++.+.||+|+||.||+|.+.      +++.||+|+++... ....+.|.+|+.++++++||||++++++|.+    
T Consensus        25 ~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~----  100 (308)
T 4gt4_A           25 LSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTK----  100 (308)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred             HHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEE----
Confidence            456788899999999999999863      46789999997553 3456789999999999999999999999976    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccc
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHA--------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT  161 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~--------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~  161 (205)
                         ...+++||||+++|+|.+++..+.              ...+++..+..++.|++.||.|||+   .+|+||||||+
T Consensus       101 ---~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLK~~  174 (308)
T 4gt4_A          101 ---DQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS---HHVVHKDLATR  174 (308)
T ss_dssp             ---SSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGG
T ss_pred             ---CCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCCCCCCcccc
Confidence               567899999999999999996432              1358999999999999999999999   79999999999


Q ss_pred             cEEeCCCCceeEcCCCchhhccccc---ccccccccccccCCCCC
Q 028725          162 DILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       162 nilv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      ||||++++.+||+|||+|+......   ......||..|||||..
T Consensus       175 NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l  219 (308)
T 4gt4_A          175 NVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAI  219 (308)
T ss_dssp             GEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHH
T ss_pred             ceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHH
Confidence            9999999999999999998765443   23345899999999963

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=2.7e-41  Score=259.19  Aligned_cols=169  Identities=21%  Similarity=0.271  Sum_probs=143.1

Q ss_pred             CCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      |++.+.||+|+||.||+|.+. ++..||+|++....  ....+.+.+|+.++++++||||+++++++.+..   .....+
T Consensus        28 ~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~---~~~~~~  104 (290)
T 3fpq_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTV---KGKKCI  104 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEE---TTEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeecc---CCCcEE
Confidence            477788999999999999964 68899999996543  234567899999999999999999999876421   123568


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCc--eeecCCccccEEeC-CCCceeEcCCCch
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG--VFSNNLKITDILLD-QNLVAKISSYNLP  179 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~--i~h~dlkp~nilv~-~~~~~~l~Dfg~a  179 (205)
                      ++||||+++|+|.+++....  .+++..+..++.|++.||.|||+   .+  |+||||||+|||++ .++.+||+|||+|
T Consensus       105 ~lvmEy~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~ylH~---~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla  179 (290)
T 3fpq_A          105 VLVTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHT---RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLA  179 (290)
T ss_dssp             EEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHT---SSSCCCCCCCCGGGEEESSTTSCEEECCTTGG
T ss_pred             EEEEeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCCCEEecccChhheeEECCCCCEEEEeCcCC
Confidence            99999999999999998654  78999999999999999999999   56  99999999999998 4789999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +.... ......+||+.|||||..
T Consensus       180 ~~~~~-~~~~~~~GTp~YmAPE~~  202 (290)
T 3fpq_A          180 TLKRA-SFAKAVIGTPEFMAPEMY  202 (290)
T ss_dssp             GGCCT-TSBEESCSSCCCCCGGGG
T ss_pred             EeCCC-CccCCcccCccccCHHHc
Confidence            86554 334456899999999975

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=6.7e-42  Score=264.33  Aligned_cols=171  Identities=20%  Similarity=0.347  Sum_probs=141.7

Q ss_pred             HHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           19 LEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        19 ~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      |+...+++.+.+.||+|+||+||+|.+.  ..||+|+++...  ....+.|.+|+.++++++||||+++++++.+     
T Consensus        31 Wei~~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-----  103 (307)
T 3omv_A           31 WEIEASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-----  103 (307)
T ss_dssp             CBCCTTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----
T ss_pred             cEEcHHHeEEeeEEeeCCCcEEEEEEEC--CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-----
Confidence            3445578889999999999999999875  358999987543  2345678999999999999999999997743     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                         +.+++||||+++|+|.+++.... ..+++..+..++.|++.||.|||+   .+|+||||||+|||+++++.+||+||
T Consensus       104 ---~~~~iVmEy~~gGsL~~~l~~~~-~~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DF  176 (307)
T 3omv_A          104 ---DNLAIVTQWCEGSSLYKHLHVQE-TKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDF  176 (307)
T ss_dssp             ---SSCEEEEECCSSCBHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCC
T ss_pred             ---CeEEEEEEcCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCccCCccCHHHEEECCCCcEEEeec
Confidence               45899999999999999997543 469999999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhccccc---ccccccccccccCCCCC
Q 028725          177 NLPLLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      |+|+......   ......||+.|||||..
T Consensus       177 Gla~~~~~~~~~~~~~~~~GT~~ymAPE~l  206 (307)
T 3omv_A          177 GLATVKSRWSGSQQVEQPTGSVLWMAPEVI  206 (307)
T ss_dssp             SSCBC------------CCCCTTSCCHHHH
T ss_pred             cCceecccCCcceeecccccCCCccCHHHh
Confidence            9998765432   33446899999999963

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=2.8e-42  Score=265.95  Aligned_cols=169  Identities=18%  Similarity=0.258  Sum_probs=141.0

Q ss_pred             hcCCCcceeeccCcceEEEEEEec----CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~----~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      .++|++++.||+|+||.||+|...    +++.||+|++++..  ......+.+|+.++++++||||+++++++.+     
T Consensus        23 p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-----   97 (304)
T 3ubd_A           23 PSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQT-----   97 (304)
T ss_dssp             GGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEE-----
T ss_pred             ccccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE-----
Confidence            468999999999999999999852    47899999997642  2234467889999999999999999999877     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                        .+.+|+||||++||+|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||++++++.+||+||
T Consensus        98 --~~~~~ivmEy~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DF  170 (304)
T 3ubd_A           98 --EGKLYLILDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDF  170 (304)
T ss_dssp             --TTEEEEEECCCTTCEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECTTSCEEEESS
T ss_pred             --CCEEEEEEEcCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHeEEcCCCCEEeccc
Confidence              678999999999999999998654  79999999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhcccc-cccccccccccccCCCCC
Q 028725          177 NLPLLAENA-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~-~~~~~~~~~~~~~aPE~~  203 (205)
                      |+|+..... ......+||+.|||||..
T Consensus       171 Gla~~~~~~~~~~~~~~GT~~YmAPE~~  198 (304)
T 3ubd_A          171 GLSKESIDHEKKAYSFCGTVEYMAPEVV  198 (304)
T ss_dssp             EEEEC-----CCCCSCCCCGGGCCHHHH
T ss_pred             ccceeccCCCccccccccCcccCCHHHh
Confidence            999865443 344557999999999964

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=2.2e-41  Score=264.00  Aligned_cols=164  Identities=16%  Similarity=0.232  Sum_probs=140.8

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      .+.|++.+.||+|+||.||+|.+. +|+.||+|+++.+...     .+|+.+++.++||||+++++++.+       .+.
T Consensus        57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~-----~~E~~il~~l~HpnIV~l~~~~~~-------~~~  124 (336)
T 4g3f_A           57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR-----VEELVACAGLSSPRIVPLYGAVRE-------GPW  124 (336)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC-----THHHHTTTTCCCTTBCCEEEEEEE-------TTE
T ss_pred             hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHhH-----HHHHHHHHhCCCCCCCcEEEEEEE-------CCE
Confidence            466888999999999999999964 6999999999754322     369999999999999999999876       678


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC-ceeEcCCCchh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-VAKISSYNLPL  180 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~-~~~l~Dfg~a~  180 (205)
                      +|+||||++||+|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+|||++.++ .+||+|||+|+
T Consensus       125 ~~ivmEy~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~~vKl~DFGla~  199 (336)
T 4g3f_A          125 VNIFMELLEGGSLGQLIKQMG--CLPEDRALYYLGQALEGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHAL  199 (336)
T ss_dssp             EEEEECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCGGGEEECTTSCCEEECCCTTCE
T ss_pred             EEEEEeccCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCceecccCHHHEEEeCCCCEEEEeeCCCCe
Confidence            999999999999999998654  79999999999999999999999   7999999999999999887 69999999998


Q ss_pred             hcccccc------cccccccccccCCCCC
Q 028725          181 LAENAEK------VGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~------~~~~~~~~~~~aPE~~  203 (205)
                      .......      ....+||+.|||||..
T Consensus       200 ~~~~~~~~~~~~~~~~~~GT~~YmAPE~~  228 (336)
T 4g3f_A          200 CLQPDGLGKSLLTGDYIPGTETHMAPEVV  228 (336)
T ss_dssp             EC------------CCCCCCGGGCCHHHH
T ss_pred             EccCCCcccceecCCccccCccccCHHHH
Confidence            7765432      2234799999999964

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=4.1e-41  Score=259.76  Aligned_cols=178  Identities=17%  Similarity=0.347  Sum_probs=137.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeeccc-----
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFD-----   95 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~-----   95 (205)
                      .++|++.+.||+|+||.||+|... +|+.||+|+++.... ...+.+.+|+.++++++||||+++++++.+....     
T Consensus         4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~   83 (299)
T 4g31_A            4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP   83 (299)
T ss_dssp             HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred             chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence            457999999999999999999964 699999999975543 3346788999999999999999999988753211     


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEc
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAW-QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  174 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~  174 (205)
                      ......+|++|||+++|+|.+++..+.. ...++..++.++.|++.||.|||+   .+|+||||||+||+++.++.+||+
T Consensus        84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~---~~IiHRDlKp~NILl~~~~~vKl~  160 (299)
T 4g31_A           84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVG  160 (299)
T ss_dssp             ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEEC
T ss_pred             cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHH---CcCccccCcHHHeEECCCCcEEEc
Confidence            1123357999999999999999986532 235566788999999999999999   799999999999999999999999


Q ss_pred             CCCchhhccccccc-------------ccccccccccCCCCC
Q 028725          175 SYNLPLLAENAEKV-------------GHVTPYSGSINPTNS  203 (205)
Q Consensus       175 Dfg~a~~~~~~~~~-------------~~~~~~~~~~aPE~~  203 (205)
                      |||+|+........             ...+||+.|||||..
T Consensus       161 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~  202 (299)
T 4g31_A          161 DFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQI  202 (299)
T ss_dssp             CCCCC--------------------------CCCTTSCHHHH
T ss_pred             cCccceecCCCccccccccccccccccCCcccCccccCHHHH
Confidence            99999877654321             224799999999964

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=7.7e-40  Score=253.42  Aligned_cols=172  Identities=19%  Similarity=0.299  Sum_probs=137.4

Q ss_pred             cCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEE
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (205)
                      ++|.+.+.||+|+||.||+|.+ +|+.||+|+++.... .......|+..+..++||||+++++++.+..   .....++
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~---~~~~~~~   77 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDN---GTWTQLW   77 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC---SSSEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecC---CCceEEE
Confidence            5688899999999999999998 489999999964321 1122334666667889999999999987621   1123689


Q ss_pred             EEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcC-----CCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725          104 LIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTG-----IVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~-----~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      +||||+++|+|.+++...   .+++..+..++.|++.||.|||++     +..+|+||||||+|||+++++.+||+|||+
T Consensus        78 lV~Ey~~~gsL~~~l~~~---~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGl  154 (303)
T 3hmm_A           78 LVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL  154 (303)
T ss_dssp             EEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred             EEecCCCCCcHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCC
Confidence            999999999999999764   588999999999999999999973     124899999999999999999999999999


Q ss_pred             hhhcccccc-----cccccccccccCCCCC
Q 028725          179 PLLAENAEK-----VGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~-----~~~~~~~~~~~aPE~~  203 (205)
                      |+.......     .....||+.|||||..
T Consensus       155 a~~~~~~~~~~~~~~~~~~GT~~ymAPE~l  184 (303)
T 3hmm_A          155 AVRHDSATDTIDIAPNHRVGTKRYMAPEVL  184 (303)
T ss_dssp             CEEEETTTTEESCC-----CCGGGCCHHHH
T ss_pred             CccccCCCCceeeecccccccccccCHHHh
Confidence            987665432     2235799999999963

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=6.3e-40  Score=258.10  Aligned_cols=180  Identities=21%  Similarity=0.351  Sum_probs=151.1

Q ss_pred             cCHHHHHHHhcCCCcceeeccCcceEEEEEEecC------CcEEEEEEecccCC-cCHHHHHHHHHHHhccCC-Cccccc
Q 028725           14 FSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKN------GTFIAIRCLKMKKS-HSTRNFMHHIELISKLRH-CHLVSA   85 (205)
Q Consensus        14 ~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~------~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~-~~i~~~   85 (205)
                      +...+|+...++|++++.||+|+||.||+|.+..      ++.||+|.++.... ...+.+.+|+.++.++.| |||+++
T Consensus        54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l  133 (353)
T 4ase_A           54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL  133 (353)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence            4556777778999999999999999999999642      46899999975432 345678999999999975 899999


Q ss_pred             ccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q 028725           86 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA--------------WQSLTWTQRISAAIGVARGIQFLHTGIVP  151 (205)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~  151 (205)
                      +++|.+      .+..+++||||+++|+|.+++....              ...+++..+..++.|++.||.|||+   .
T Consensus       134 ~g~~~~------~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~---~  204 (353)
T 4ase_A          134 LGACTK------PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---R  204 (353)
T ss_dssp             EEEECC------TTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH---T
T ss_pred             EEEEEe------cCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhh---C
Confidence            999865      1356899999999999999996432              2358899999999999999999999   7


Q ss_pred             ceeecCCccccEEeCCCCceeEcCCCchhhccccc---ccccccccccccCCCC
Q 028725          152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  202 (205)
Q Consensus       152 ~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~  202 (205)
                      +|+||||||+||++++++.+||+|||+|+......   ......||+.|||||.
T Consensus       205 ~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~  258 (353)
T 4ase_A          205 KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPET  258 (353)
T ss_dssp             TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHH
T ss_pred             CeecCccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHH
Confidence            99999999999999999999999999998765433   2334578999999995

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.5e-38  Score=254.09  Aligned_cols=172  Identities=13%  Similarity=0.248  Sum_probs=144.2

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ++|++++.||+|+||.||+|.. .+|+.||+|+++....  ...+.+.+|+.+|+.++||||+++++++...... ....
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~-~~~~  132 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPY-GEFK  132 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCT-TTCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeeccccc-ccCC
Confidence            5799999999999999999995 4699999999975532  2345678999999999999999999987642211 2246


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      .+|+||||+. |+|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+|+
T Consensus       133 ~~~ivmE~~~-g~L~~~i~~~~--~l~~~~~~~~~~qil~al~ylH~---~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~  206 (398)
T 4b99_A          133 SVYVVLDLME-SDLHQIIHSSQ--PLTLEHVRYFLYQLLRGLKYMHS---AQVIHRDLKPSNLLVNENCELKIGDFGMAR  206 (398)
T ss_dssp             CEEEEEECCS-EEHHHHHTSSS--CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTCCEEECCCTTCB
T ss_pred             EEEEEEeCCC-CCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CcCcCCCcCccccccCCCCCEEEeecceee
Confidence            7999999995 68999987654  79999999999999999999999   799999999999999999999999999998


Q ss_pred             hcccc-----cccccccccccccCCCC
Q 028725          181 LAENA-----EKVGHVTPYSGSINPTN  202 (205)
Q Consensus       181 ~~~~~-----~~~~~~~~~~~~~aPE~  202 (205)
                      .....     ......+||+.|||||.
T Consensus       207 ~~~~~~~~~~~~~~~~~GT~~Y~APEv  233 (398)
T 4b99_A          207 GLCTSPAEHQYFMTEYVATRWYRAPEL  233 (398)
T ss_dssp             CC-------CCCCCSSCCCCTTCCHHH
T ss_pred             ecccCccccccccccceeChHhcCHHH
Confidence            66432     23344699999999995

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=2.4e-38  Score=264.33  Aligned_cols=169  Identities=21%  Similarity=0.305  Sum_probs=144.9

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHH---HHHHHhccCCCcccccccceeeecc
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMH---HIELISKLRHCHLVSALGHCFECYF   94 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~---e~~~l~~l~~~~i~~~~~~~~~~~~   94 (205)
                      ..++|++++.||+|+||.||+|... +|+.||+|++++..   ........+   ++.+++.++||||+++++.+.+   
T Consensus       187 slddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~---  263 (689)
T 3v5w_A          187 TMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT---  263 (689)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEEC---
T ss_pred             chHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEE---
Confidence            3578999999999999999999954 69999999997542   223333333   4567777899999999998876   


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEc
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  174 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~  174 (205)
                          .+.+|+||||++||+|.+++....  .+++..+..++.||+.||.|||+   .+|+||||||+|||++.+|.+||+
T Consensus       264 ----~~~lylVmEy~~GGdL~~~l~~~~--~l~E~~a~~y~~qIl~aL~yLH~---~gIiHRDLKPeNILld~~G~vKL~  334 (689)
T 3v5w_A          264 ----PDKLSFILDLMNGGDLHYHLSQHG--VFSEADMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRIS  334 (689)
T ss_dssp             ----SSEEEEEECCCCSCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECTTSCEEEC
T ss_pred             ----CCEEEEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCchHHeEEeCCCCEEec
Confidence                678999999999999999998654  79999999999999999999999   799999999999999999999999


Q ss_pred             CCCchhhcccccccccccccccccCCCCC
Q 028725          175 SYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       175 Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |||+|+..... .....+||+.|||||..
T Consensus       335 DFGlA~~~~~~-~~~t~~GTp~YmAPEvl  362 (689)
T 3v5w_A          335 DLGLACDFSKK-KPHASVGTHGYMAPEVL  362 (689)
T ss_dssp             CCTTCEECSSC-CCCSCCSCGGGCCHHHH
T ss_pred             ccceeeecCCC-CCCCccCCcCccCHHHH
Confidence            99999876653 34457999999999964

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=5e-38  Score=261.70  Aligned_cols=170  Identities=17%  Similarity=0.263  Sum_probs=152.5

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      .++|++++.||+|+||.||+|..+ +|+.||+|++........+.+.+|+.+|+.++||||+++++++.+       ...
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~-------~~~  228 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFED-------DNE  228 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEC-------SSE
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEE-------CCE
Confidence            468999999999999999999964 699999999987665666788899999999999999999998876       678


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC--CceeEcCCCch
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN--LVAKISSYNLP  179 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~--~~~~l~Dfg~a  179 (205)
                      ++++|||++||+|.+++.... ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.+  +.+||+|||+|
T Consensus       229 ~~iv~E~~~gg~L~~~i~~~~-~~l~e~~~~~~~~qi~~al~ylH~---~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a  304 (573)
T 3uto_A          229 MVMIYEFMSGGELFEKVADEH-NKMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFGLT  304 (573)
T ss_dssp             EEEEEECCCCCBHHHHHTCTT-SCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCSSC
T ss_pred             EEEEEeecCCCcHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCChhhccccCCCCCCEEEeeccce
Confidence            999999999999999987543 469999999999999999999999   799999999999999854  89999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +.+.........+||+.|||||..
T Consensus       305 ~~~~~~~~~~~~~GT~~y~APEv~  328 (573)
T 3uto_A          305 AHLDPKQSVKVTTGTAEFAAPEVA  328 (573)
T ss_dssp             EECCTTSEEEEECSSGGGCCHHHH
T ss_pred             eEccCCCceeeeEECccccCHHHh
Confidence            988877766677999999999964

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=2.6e-37  Score=244.29  Aligned_cols=169  Identities=12%  Similarity=0.210  Sum_probs=141.9

Q ss_pred             HHHHHhcCCCcceeeccCcceEEEEEEec----CCcEEEEEEecccCCcCHHHHHHHHHHHhcc-CCCcccccccceeee
Q 028725           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFEC   92 (205)
Q Consensus        18 ~~~~~~~~y~~~~~lg~g~~g~V~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~   92 (205)
                      .++...++|++.+.||+|+||.||+|..+    +++.||+|.+...  .....+.+|+.+++.+ .||||+++.+++.+ 
T Consensus        15 ~~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~--~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~-   91 (361)
T 4f9c_A           15 AVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT--SHPIRIAAELQCLTVAGGQDNVMGVKYCFRK-   91 (361)
T ss_dssp             HSGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT--SCHHHHHHHHHHHHHTCSBTTBCCCSEEEEE-
T ss_pred             hcCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc--cCHHHHHHHHHHHHHhcCCCCCceEEEEEEE-
Confidence            34455688999999999999999999853    4678999998643  3456678899999988 69999999998876 


Q ss_pred             cccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC-Cce
Q 028725           93 YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN-LVA  171 (205)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~-~~~  171 (205)
                            .+.+++||||+++++|.+++.     .+++..+..++.|++.||.|||+   .||+||||||+||+++.+ +.+
T Consensus        92 ------~~~~~lvmE~~~g~~L~~~~~-----~l~~~~~~~~~~qll~al~ylH~---~gIiHRDiKPeNiLl~~~~~~~  157 (361)
T 4f9c_A           92 ------NDHVVIAMPYLEHESFLDILN-----SLSFQEVREYMLNLFKALKRIHQ---FGIVHRDVKPSNFLYNRRLKKY  157 (361)
T ss_dssp             ------TTEEEEEEECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEE
T ss_pred             ------CCEEEEEEeCCCcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCcCCHHHeEEeCCCCeE
Confidence                  678999999999999999884     48889999999999999999999   799999999999999876 799


Q ss_pred             eEcCCCchhhccccc-----------------------------ccccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAE-----------------------------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~-----------------------------~~~~~~~~~~~~aPE~~  203 (205)
                      ||+|||+|+......                             .....+||++|+|||..
T Consensus       158 kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l  218 (361)
T 4f9c_A          158 ALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVL  218 (361)
T ss_dssp             EECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHH
T ss_pred             EECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHH
Confidence            999999997544321                             12234799999999954

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=2.2e-35  Score=230.97  Aligned_cols=171  Identities=17%  Similarity=0.290  Sum_probs=151.9

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ...++|++.+.||+|+||.||+|.. .+|+.||+|++....  ....+.+.+|+.+++.++||||+++++++..      
T Consensus        12 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~------   85 (328)
T 3fe3_A           12 PHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIET------   85 (328)
T ss_dssp             CEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC------
T ss_pred             CccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE------
Confidence            3467899999999999999999996 579999999997553  2345678899999999999999999998865      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ....++||||+++++|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||
T Consensus        86 -~~~~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~NIll~~~~~~kl~DFG  159 (328)
T 3fe3_A           86 -EKTLYLIMEYASGGEVFDYLVAHG--RMKEKEARSKFRQIVSAVQYCHQ---KRIVHRDLKAENLLLDADMNIKIADFG  159 (328)
T ss_dssp             -SSEEEEEECCCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSTT
T ss_pred             -CCEEEEEEECCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCEeccCCCHHHEEEcCCCCEEEeecc
Confidence             678999999999999999987654  68899999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccccccccccccccCCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +++............||++|+|||..
T Consensus       160 ~a~~~~~~~~~~~~~gt~~y~aPE~~  185 (328)
T 3fe3_A          160 FSNEFTVGGKLDAFCGAPPYAAPELF  185 (328)
T ss_dssp             CCGGGSSSCGGGTTSSSGGGCCHHHH
T ss_pred             CceecCCCCccccccCCcceeCcccc
Confidence            99887776666677999999999963

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=9.4e-35  Score=231.58  Aligned_cols=169  Identities=15%  Similarity=0.291  Sum_probs=152.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .++|++.+.||+|+||.||+|... +++.||+|++...   .......+.+|+.+++.++||||+++++.+.+       
T Consensus        14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~-------   86 (384)
T 4fr4_A           14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQD-------   86 (384)
T ss_dssp             GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-------
T ss_pred             hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEe-------
Confidence            478999999999999999999954 5889999999654   24556788899999999999999999998876       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....++||||+.+++|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||+
T Consensus        87 ~~~~~lv~e~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~vkL~DFG~  161 (384)
T 4fr4_A           87 EEDMFMVVDLLLGGDLRYHLQQNV--HFKEETVKLFICELVMALDYLQN---QRIIHRDMKPDNILLDEHGHVHITDFNI  161 (384)
T ss_dssp             SSEEEEEECCCTTEEHHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             CCEEEEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCceeccCcHHHeEECCCCCEEEeccce
Confidence            678999999999999999998654  68999999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +.............||+.|+|||..
T Consensus       162 a~~~~~~~~~~~~~gt~~Y~aPE~~  186 (384)
T 4fr4_A          162 AAMLPRETQITTMAGTKPYMAPEMF  186 (384)
T ss_dssp             CEECCTTCCBCCCCSCGGGCCGGGT
T ss_pred             eeeccCCCceeccCCCccccCCeee
Confidence            9887776666778999999999975

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=1e-34  Score=227.87  Aligned_cols=169  Identities=18%  Similarity=0.297  Sum_probs=148.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .++|++.+.||+|+||.||+|... +|+.||+|++++.   .......+.+|..+++.++||||+++.+.+..       
T Consensus         4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~-------   76 (337)
T 1o6l_A            4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQT-------   76 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEEC-------
T ss_pred             hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEe-------
Confidence            478999999999999999999964 6999999999754   34566778899999999999999999998876       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....++||||+++++|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||+
T Consensus        77 ~~~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~vkL~DFG~  151 (337)
T 1o6l_A           77 HDRLCFVMEYANGGELFFHLSRER--VFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGL  151 (337)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             CCEEEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeecCcCCHHHEEECCCCCEEEeeccc
Confidence            678999999999999999987653  68899999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcc-cccccccccccccccCCCCC
Q 028725          179 PLLAE-NAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~-~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ++... .........||+.|+|||..
T Consensus       152 a~~~~~~~~~~~~~~gt~~y~aPE~~  177 (337)
T 1o6l_A          152 CKEGISDGATMKTFCGTPEYLAPEVL  177 (337)
T ss_dssp             CBCSCCTTCCBCCCEECGGGCCGGGG
T ss_pred             hhhcccCCCcccccccChhhCChhhh
Confidence            97643 33344556899999999974

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=1.1e-34  Score=226.42  Aligned_cols=190  Identities=30%  Similarity=0.569  Sum_probs=159.3

Q ss_pred             CCCcccccCHHHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCccccc
Q 028725            7 GLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSA   85 (205)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~   85 (205)
                      .......|+..++....++|++.+.||+|+||.||+|...+++.||+|++.... ......+.+|+.+++.++||||+++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~   92 (326)
T 3uim_A           13 HLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRL   92 (326)
T ss_dssp             --CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCC
T ss_pred             ccCccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccce
Confidence            345567899999999999999999999999999999998789999999997653 2334468899999999999999999


Q ss_pred             ccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCC--CCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccE
Q 028725           86 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAW--QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDI  163 (205)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~ni  163 (205)
                      ++++..       ....+++|||+++++|.+++.....  ..+++..++.++.|++.||.|||+.+..+++||||||+||
T Consensus        93 ~~~~~~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Ni  165 (326)
T 3uim_A           93 RGFCMT-------PTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANI  165 (326)
T ss_dssp             CEEECC-------SSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGE
T ss_pred             EEEEec-------CCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhE
Confidence            998865       5678999999999999999986532  3489999999999999999999992222999999999999


Q ss_pred             EeCCCCceeEcCCCchhhccccc--ccccccccccccCCCCC
Q 028725          164 LLDQNLVAKISSYNLPLLAENAE--KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       164 lv~~~~~~~l~Dfg~a~~~~~~~--~~~~~~~~~~~~aPE~~  203 (205)
                      +++.++.++|+|||++.......  ......+|..|+|||..
T Consensus       166 l~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~  207 (326)
T 3uim_A          166 LLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYL  207 (326)
T ss_dssp             EECTTCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHH
T ss_pred             EECCCCCEEeccCccccccCcccccccccccCCcCccCHHHh
Confidence            99999999999999998665432  23344699999999963

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=3.1e-34  Score=221.53  Aligned_cols=169  Identities=16%  Similarity=0.306  Sum_probs=150.4

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ..++|++.+.||+|+||.||+|.. .+++.||+|++........+.+.+|+.+++.++||||+++++.+..       .+
T Consensus        18 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------~~   90 (297)
T 3fxz_A           18 PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-------GD   90 (297)
T ss_dssp             GGGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEE-------TT
T ss_pred             hhhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEE-------CC
Confidence            356899999999999999999994 5689999999987766777888999999999999999999998876       66


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++||||+++++|.+++...   .+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++.
T Consensus        91 ~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~  164 (297)
T 3fxz_A           91 ELWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCA  164 (297)
T ss_dssp             EEEEEEECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             EEEEEEECCCCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEECCCCCEEEeeCCCce
Confidence            899999999999999999764   58899999999999999999999   799999999999999999999999999987


Q ss_pred             hccccc-ccccccccccccCCCCC
Q 028725          181 LAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ...... ......||..|+|||..
T Consensus       165 ~~~~~~~~~~~~~gt~~y~aPE~~  188 (297)
T 3fxz_A          165 QITPEQSKRSTMVGTPYWMAPEVV  188 (297)
T ss_dssp             ECCSTTCCBCCCCSCGGGCCHHHH
T ss_pred             ecCCcccccCCccCCcCccChhhh
Confidence            665443 33446899999999963

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=5e-35  Score=236.68  Aligned_cols=177  Identities=15%  Similarity=0.195  Sum_probs=150.7

Q ss_pred             HHHHHHHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceee
Q 028725           16 LEELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFE   91 (205)
Q Consensus        16 ~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   91 (205)
                      +.++....++|++.+.||+|+||.||+|... +++.||+|++++.   .......+.+|..++..++||||+++.+.+.+
T Consensus        66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~  145 (437)
T 4aw2_A           66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD  145 (437)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred             hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence            3344455688999999999999999999965 5889999999653   23344558889999999999999999998876


Q ss_pred             ecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCce
Q 028725           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVA  171 (205)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~  171 (205)
                             ...+++||||+++|+|.+++.... ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+
T Consensus       146 -------~~~~~lV~Ey~~gg~L~~~l~~~~-~~l~e~~~~~~~~qi~~aL~~LH~---~giiHrDLKp~NILl~~~g~v  214 (437)
T 4aw2_A          146 -------DNNLYLVMDYYVGGDLLTLLSKFE-DRLPEEMARFYLAEMVIAIDSVHQ---LHYVHRDIKPDNILMDMNGHI  214 (437)
T ss_dssp             -------SSEEEEEECCCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCE
T ss_pred             -------CCEEEEEEecCCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHHh---CCeEecccCHHHeeEcCCCCE
Confidence                   678999999999999999998643 468999999999999999999999   799999999999999999999


Q ss_pred             eEcCCCchhhcccccc--cccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAEK--VGHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~--~~~~~~~~~~~aPE~~  203 (205)
                      +|+|||+|+.......  .....||++|+|||..
T Consensus       215 kL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l  248 (437)
T 4aw2_A          215 RLADFGSCLKLMEDGTVQSSVAVGTPDYISPEIL  248 (437)
T ss_dssp             EECCCTTCEECCTTSCEECCSCCSCGGGCCHHHH
T ss_pred             EEcchhhhhhcccCCCcccccccCCcCeeChHHH
Confidence            9999999976654432  2335899999999963

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.9e-34  Score=223.70  Aligned_cols=170  Identities=21%  Similarity=0.392  Sum_probs=147.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      .++|.+.+.||+|+||.||+|... +++.||+|.+........+.+.+|+.+++.++||||+++++++.+       ...
T Consensus         9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------~~~   81 (310)
T 3s95_A            9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYK-------DKR   81 (310)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-------TTE
T ss_pred             hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEec-------CCe
Confidence            478999999999999999999964 689999999876555667788999999999999999999999876       678


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++||||+++++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++.
T Consensus        82 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~  157 (310)
T 3s95_A           82 LNFITEYIKGGTLRGIIKSMD-SQYPWSQRVSFAKDIASGMAYLHS---MNIIHRDLNSHNCLVRENKNVVVADFGLARL  157 (310)
T ss_dssp             EEEEEECCTTCBHHHHHHHCC-TTSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEECTTSCEEECCCTTCEE
T ss_pred             eEEEEEecCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCcCeEEECCCCCEEEeeccccee
Confidence            999999999999999998643 468999999999999999999999   7999999999999999999999999999976


Q ss_pred             ccccccc---------------ccccccccccCCCCC
Q 028725          182 AENAEKV---------------GHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~~~---------------~~~~~~~~~~aPE~~  203 (205)
                      .......               ....||..|+|||..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  194 (310)
T 3s95_A          158 MVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMI  194 (310)
T ss_dssp             CC--------------------CCCCSCGGGCCHHHH
T ss_pred             cccccccccccccccccccccccccCCCcceeCHHHh
Confidence            6543321               145799999999964

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=4.3e-34  Score=226.25  Aligned_cols=169  Identities=18%  Similarity=0.277  Sum_probs=149.5

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCc------CHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH------STRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~------~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      .++|++.+.||+|+||.||+|... +|+.||+|+++.....      ..+.+.+|+.+++.++||||+++.+++.+    
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~----   86 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYEN----   86 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEEC----
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEe----
Confidence            567999999999999999999965 6899999999765322      35678999999999999999999998865    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC----ce
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL----VA  171 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~----~~  171 (205)
                         ....++||||+++++|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++    .+
T Consensus        87 ---~~~~~lv~e~~~gg~L~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~~~~v  158 (361)
T 2yab_A           87 ---RTDVVLILELVSGGELFDFLAQKE--SLSEEEATSFIKQILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHI  158 (361)
T ss_dssp             ---SSEEEEEEECCCSCBHHHHHTTCS--CCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCTTSSSCCE
T ss_pred             ---CCEEEEEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEeCCCCCccCE
Confidence               678999999999999999997654  78999999999999999999999   7999999999999998776    79


Q ss_pred             eEcCCCchhhcccccccccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +|+|||++.............||++|+|||..
T Consensus       159 kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~  190 (361)
T 2yab_A          159 KLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIV  190 (361)
T ss_dssp             EECCCSSCEECCTTCCCCCCCSCGGGCCHHHH
T ss_pred             EEEecCCceEcCCCCccccCCCCccEECchHH
Confidence            99999999887776655667899999999953

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=1.2e-34  Score=232.76  Aligned_cols=172  Identities=16%  Similarity=0.257  Sum_probs=149.0

Q ss_pred             HHHHHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeec
Q 028725           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECY   93 (205)
Q Consensus        18 ~~~~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   93 (205)
                      ++....++|++.+.||+|+||.||+|... +++.||+|++++.   .......+.+|..+++.++||||+++++.+.+  
T Consensus        63 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~--  140 (410)
T 3v8s_A           63 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD--  140 (410)
T ss_dssp             HHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC--
T ss_pred             hcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE--
Confidence            34445678999999999999999999965 5889999999653   23445567889999999999999999998876  


Q ss_pred             ccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeE
Q 028725           94 FDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  173 (205)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l  173 (205)
                           ...+++||||+++|+|.+++...   .+++.....++.|++.||.|||+   .+|+||||||+||+++.++.++|
T Consensus       141 -----~~~~~lV~E~~~gg~L~~~l~~~---~~~e~~~~~~~~qi~~aL~~LH~---~givHrDLKp~NILl~~~g~ikL  209 (410)
T 3v8s_A          141 -----DRYLYMVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGHLKL  209 (410)
T ss_dssp             -----SSEEEEEECCCTTEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEE
T ss_pred             -----CCEEEEEEeCCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeeECCCCCEEE
Confidence                 67899999999999999998754   58899999999999999999999   79999999999999999999999


Q ss_pred             cCCCchhhccccc--ccccccccccccCCCC
Q 028725          174 SSYNLPLLAENAE--KVGHVTPYSGSINPTN  202 (205)
Q Consensus       174 ~Dfg~a~~~~~~~--~~~~~~~~~~~~aPE~  202 (205)
                      +|||+++......  ......||+.|+|||.
T Consensus       210 ~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~  240 (410)
T 3v8s_A          210 ADFGTCMKMNKEGMVRCDTAVGTPDYISPEV  240 (410)
T ss_dssp             CCCTTCEECCTTSEEECCSCCSCGGGCCHHH
T ss_pred             eccceeEeeccCCcccccCCcCCccccCHHH
Confidence            9999998766543  2345689999999995

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=1.1e-34  Score=226.12  Aligned_cols=180  Identities=36%  Similarity=0.628  Sum_probs=153.9

Q ss_pred             ccCHHHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeee
Q 028725           13 TFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC   92 (205)
Q Consensus        13 ~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   92 (205)
                      .+.+.++....++|++.+.||+|+||.||+|...+++.||+|++........+.+.+|+.+++.++||||+++++++.. 
T Consensus        28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-  106 (321)
T 2qkw_B           28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDE-  106 (321)
T ss_dssp             --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCC-
T ss_pred             eecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcC-
Confidence            3444555667799999999999999999999988899999999977666667889999999999999999999998865 


Q ss_pred             cccCCCCCeEEEEEeecCCCcHHHhhccCC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc
Q 028725           93 YFDDSSVSRIFLIFEYVPNGTLRSWISGHA--WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  170 (205)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~  170 (205)
                            .+..++||||+++++|.+++....  ...+++..++.++.|++.||.|||+   .+++||||||+||+++.++.
T Consensus       107 ------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~  177 (321)
T 2qkw_B          107 ------RNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHT---RAIIHRDVKSINILLDENFV  177 (321)
T ss_dssp             ------TTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCSTTEEECTTCC
T ss_pred             ------CCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcC---CCeecCCCCHHHEEECCCCC
Confidence                  567899999999999999987543  2358999999999999999999999   79999999999999999999


Q ss_pred             eeEcCCCchhhccccc---ccccccccccccCCCC
Q 028725          171 AKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  202 (205)
Q Consensus       171 ~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~  202 (205)
                      ++|+|||++.......   ......+|..|+|||.
T Consensus       178 ~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~  212 (321)
T 2qkw_B          178 PKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEY  212 (321)
T ss_dssp             EEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHH
T ss_pred             EEEeecccccccccccccccccccCCCccccCHHH
Confidence            9999999997654322   2233468999999995

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=2.5e-34  Score=229.86  Aligned_cols=170  Identities=21%  Similarity=0.301  Sum_probs=146.0

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhcc-CCCcccccccceeeecccC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~   96 (205)
                      ..++|++.+.||+|+||.||+|... +++.||+|++++..   ......+.+|..++.++ +||||+++.+.+.+     
T Consensus        50 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~-----  124 (396)
T 4dc2_A           50 GLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT-----  124 (396)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEEC-----
T ss_pred             ChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEE-----
Confidence            3478999999999999999999965 58899999997653   33345678899988877 89999999998876     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                        ...+++||||+++++|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+||
T Consensus       125 --~~~~~lV~E~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~---~givHrDLKp~NILl~~~g~ikL~DF  197 (396)
T 4dc2_A          125 --ESRLFFVIEYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDY  197 (396)
T ss_dssp             --SSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCC
T ss_pred             --CCEEEEEEEcCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCEEeccCCHHHEEECCCCCEEEeec
Confidence              678999999999999999988654  68999999999999999999999   79999999999999999999999999


Q ss_pred             Cchhh-cccccccccccccccccCCCCC
Q 028725          177 NLPLL-AENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~-~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |+++. ..........+||+.|+|||..
T Consensus       198 Gla~~~~~~~~~~~~~~gt~~Y~aPE~l  225 (396)
T 4dc2_A          198 GMCKEGLRPGDTTSTFCGTPNYIAPEIL  225 (396)
T ss_dssp             TTCBCCCCTTCCBCCCCBCGGGCCHHHH
T ss_pred             ceeeecccCCCccccccCCcccCCchhh
Confidence            99986 3334455567999999999964

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=1.8e-33  Score=219.41  Aligned_cols=179  Identities=19%  Similarity=0.323  Sum_probs=156.1

Q ss_pred             cccCHHHHHHHhcC----------CCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCC
Q 028725           12 RTFSLEELEEATNN----------FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHC   80 (205)
Q Consensus        12 ~~~~~~~~~~~~~~----------y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~   80 (205)
                      ..++.+++....+.          |...+.||+|+||.||+|... +|+.||+|++........+.+.+|+.+++.++||
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~  102 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF  102 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence            45778888776654          778889999999999999965 6999999999877777778899999999999999


Q ss_pred             cccccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCcc
Q 028725           81 HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKI  160 (205)
Q Consensus        81 ~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp  160 (205)
                      ||+++.+.+..       .+..+++|||+++++|.+++...   .+++..+..++.|++.||.|||+   .+++||||||
T Consensus       103 niv~~~~~~~~-------~~~~~lv~e~~~~~~L~~~l~~~---~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp  169 (321)
T 2c30_A          103 NVVEMYKSYLV-------GEELWVLMEFLQGGALTDIVSQV---RLNEEQIATVCEAVLQALAYLHA---QGVIHRDIKS  169 (321)
T ss_dssp             TBCCEEEEEEE-------TTEEEEEECCCCSCBHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSG
T ss_pred             CcceEEEEEEE-------CCEEEEEEecCCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCH
Confidence            99999998876       56899999999999999998753   58999999999999999999999   7999999999


Q ss_pred             ccEEeCCCCceeEcCCCchhhccccc-ccccccccccccCCCCC
Q 028725          161 TDILLDQNLVAKISSYNLPLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       161 ~nilv~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      +||+++.++.++|+|||++....... ......||..|+|||..
T Consensus       170 ~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~  213 (321)
T 2c30_A          170 DSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVI  213 (321)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHH
T ss_pred             HHEEECCCCcEEEeeeeeeeecccCccccccccCCccccCHhhh
Confidence            99999999999999999997665433 33456899999999964

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=233.06  Aligned_cols=177  Identities=14%  Similarity=0.194  Sum_probs=151.0

Q ss_pred             HHHHHHHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceee
Q 028725           16 LEELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFE   91 (205)
Q Consensus        16 ~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   91 (205)
                      +.++....++|++.+.||+|+||.||+|... +++.||+|++++..   ......+.+|..++..++||||+++.+.+.+
T Consensus        53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~  132 (412)
T 2vd5_A           53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQD  132 (412)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred             hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence            4444556788999999999999999999964 69999999996532   2344567889999999999999999998876


Q ss_pred             ecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCce
Q 028725           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVA  171 (205)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~  171 (205)
                             .+.+++||||+++|+|.+++.... ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+
T Consensus       133 -------~~~~~lVmE~~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~LH~---~giiHrDLKp~NILld~~g~v  201 (412)
T 2vd5_A          133 -------ENYLYLVMEYYVGGDLLTLLSKFG-ERIPAEMARFYLAEIVMAIDSVHR---LGYVHRDIKPDNILLDRCGHI  201 (412)
T ss_dssp             -------SSEEEEEECCCCSCBHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCE
T ss_pred             -------CCEEEEEEcCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccCHHHeeecCCCCE
Confidence                   678999999999999999997542 368999999999999999999999   799999999999999999999


Q ss_pred             eEcCCCchhhcccccc--cccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAEK--VGHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~--~~~~~~~~~~~aPE~~  203 (205)
                      +|+|||+++.......  .....||+.|+|||..
T Consensus       202 kL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l  235 (412)
T 2vd5_A          202 RLADFGSCLKLRADGTVRSLVAVGTPDYLSPEIL  235 (412)
T ss_dssp             EECCCTTCEECCTTSCEECSSCCSCGGGCCHHHH
T ss_pred             EEeechhheeccCCCccccceeccccCcCCHHHH
Confidence            9999999987655432  2345899999999953

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7e-34  Score=221.81  Aligned_cols=169  Identities=15%  Similarity=0.195  Sum_probs=149.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      .++|++.+.||+|+||.||+|... +++.+|+|++... ......+.+|+.+++.++||||+++.+.+.+       ...
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-------~~~   75 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHRNILHLHESFES-------MEE   75 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-THHHHHHHHHHHHHHHSCCTTBCCEEEEEEE-------TTE
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC-cccHHHHHHHHHHHHhCCCCCCCeEeEEEec-------CCE
Confidence            578999999999999999999964 5889999999743 3345668899999999999999999998876       678


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC--CCceeEcCCCch
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ--NLVAKISSYNLP  179 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~--~~~~~l~Dfg~a  179 (205)
                      .+++|||+++++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.  ++.++|+|||++
T Consensus        76 ~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~---~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a  151 (321)
T 1tki_A           76 LVMIFEFISGLDIFERINTSA-FELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQA  151 (321)
T ss_dssp             EEEEECCCCCCBHHHHHTSSS-CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCTTC
T ss_pred             EEEEEEeCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCCCcCCCCHHHEEEccCCCCCEEEEECCCC
Confidence            999999999999999997543 468999999999999999999999   79999999999999996  789999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      .............+|+.|+|||..
T Consensus       152 ~~~~~~~~~~~~~gt~~y~aPE~~  175 (321)
T 1tki_A          152 RQLKPGDNFRLLFTAPEYYAPEVH  175 (321)
T ss_dssp             EECCTTCEEEEEESCGGGSCHHHH
T ss_pred             eECCCCCccccccCChhhcCcHHh
Confidence            887766665667899999999964

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=227.00  Aligned_cols=170  Identities=21%  Similarity=0.327  Sum_probs=142.0

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhcc-CCCcccccccceeeeccc
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFD   95 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~   95 (205)
                      ...++|++.+.||+|+||.||+|... +++.||+|++++.   .......+.+|..++..+ .||||+++.+.+.+    
T Consensus        20 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~----   95 (353)
T 3txo_A           20 LGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQT----   95 (353)
T ss_dssp             ---CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEEC----
T ss_pred             CchhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEe----
Confidence            34578999999999999999999964 5899999999754   234566778899999988 69999999998866    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                         ....++||||+++++|.+++....  .+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.++|+|
T Consensus        96 ---~~~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NILl~~~g~ikL~D  167 (353)
T 3txo_A           96 ---PDRLFFVMEFVNGGDLMFHIQKSR--RFDEARARFYAAEIISALMFLHD---KGIIYRDLKLDNVLLDHEGHCKLAD  167 (353)
T ss_dssp             ---SSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECC
T ss_pred             ---CCEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCCcccCCCHHHEEECCCCCEEEcc
Confidence               678999999999999999997654  68999999999999999999999   7999999999999999999999999


Q ss_pred             CCchhhccc-ccccccccccccccCCCC
Q 028725          176 YNLPLLAEN-AEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       176 fg~a~~~~~-~~~~~~~~~~~~~~aPE~  202 (205)
                      ||+++.... .......+||+.|+|||.
T Consensus       168 FG~a~~~~~~~~~~~~~~gt~~y~aPE~  195 (353)
T 3txo_A          168 FGMCKEGICNGVTTATFCGTPDYIAPEI  195 (353)
T ss_dssp             CTTCBCSCC---------CCGGGCCHHH
T ss_pred             ccceeecccCCccccccCCCcCeEChhh
Confidence            999975433 334455689999999995

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=220.71  Aligned_cols=169  Identities=18%  Similarity=0.285  Sum_probs=148.9

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC------cCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS------HSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      .++|++.+.||+|+||.||+|... +++.||+|+++....      ...+.+.+|+.+++.++||||+++.+++.+    
T Consensus        10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----   85 (326)
T 2y0a_A           10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYEN----   85 (326)
T ss_dssp             HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC----
T ss_pred             ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEe----
Confidence            467999999999999999999964 689999999976532      245778999999999999999999998865    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC----ce
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL----VA  171 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~----~~  171 (205)
                         ....++|||++++++|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||+++.++    .+
T Consensus        86 ---~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~~  157 (326)
T 2y0a_A           86 ---KTDVILILELVAGGELFDFLAEKE--SLTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRI  157 (326)
T ss_dssp             ---SSEEEEEEECCCSCBHHHHHTTSS--CCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESCSSSSSCCE
T ss_pred             ---CCEEEEEEEcCCCCCHHHHHHhcC--CcCHHHHHHHHHHHHHHHHHHHH---CCeEcCCCCHHHEEEecCCCCCCCE
Confidence               678999999999999999997653  78999999999999999999999   7999999999999999877    89


Q ss_pred             eEcCCCchhhcccccccccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +|+|||++.............+|+.|+|||..
T Consensus       158 kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~  189 (326)
T 2y0a_A          158 KIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIV  189 (326)
T ss_dssp             EECCCTTCEECCTTSCCCCCCSCTTTCCHHHH
T ss_pred             EEEECCCCeECCCCCccccccCCcCcCCceee
Confidence            99999999887765555567899999999964

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4e-34  Score=224.40  Aligned_cols=168  Identities=20%  Similarity=0.292  Sum_probs=149.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .++|.+.+.||+|+||.||+|.. .+++.||+|++...   .......+.+|+.+++.++||||+++++++..       
T Consensus         8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~-------   80 (336)
T 3h4j_B            8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITT-------   80 (336)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEEC-------
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-------
Confidence            47899999999999999999995 56899999999654   23345678899999999999999999998876       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....++||||+ +|+|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+
T Consensus        81 ~~~~~lv~E~~-~g~l~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kl~DFG~  154 (336)
T 3h4j_B           81 PTDIVMVIEYA-GGELFDYIVEKK--RMTEDEGRRFFQQIICAIEYCHR---HKIVHRDLKPENLLLDDNLNVKIADFGL  154 (336)
T ss_dssp             SSEEEEEECCC-CEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHH---HTCCCCCCSTTTEEECTTCCEEECCSSC
T ss_pred             CCEEEEEEECC-CCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCchhhEEEcCCCCEEEEEecc
Confidence            66899999999 679998887553  68999999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +.............||+.|+|||..
T Consensus       155 s~~~~~~~~~~~~~gt~~y~aPE~~  179 (336)
T 3h4j_B          155 SNIMTDGNFLKTSCGSPNYAAPEVI  179 (336)
T ss_dssp             TBTTTTSBTTCCCTTSTTTSCGGGS
T ss_pred             ceeccCCcccccccCCcCcCCHHHH
Confidence            9888777666667899999999975

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=8.4e-34  Score=221.12  Aligned_cols=167  Identities=22%  Similarity=0.338  Sum_probs=147.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .++|++.+.||+|+||.||+|... +|+.||+|++++.   .....+.+.+|..+++.++||||+++.+.+.+       
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~-------   77 (318)
T 1fot_A            5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQD-------   77 (318)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEEC-------
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEe-------
Confidence            478999999999999999999964 6999999999754   23456778889999999999999999998865       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....++||||+++++|.+++....  .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+
T Consensus        78 ~~~~~lv~e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~Dfg~  152 (318)
T 1fot_A           78 AQQIFMIMDYIEGGELFSLLRKSQ--RFPNPVAKFYAAEVCLALEYLHS---KDIIYRDLKPENILLDKNGHIKITDFGF  152 (318)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHTS--SCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTSCEEECCCSS
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChheEEEcCCCCEEEeecCc
Confidence            678999999999999999998654  68899999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ++.....  .....||+.|+|||..
T Consensus       153 a~~~~~~--~~~~~gt~~y~aPE~~  175 (318)
T 1fot_A          153 AKYVPDV--TYTLCGTPDYIAPEVV  175 (318)
T ss_dssp             CEECSSC--BCCCCSCTTTCCHHHH
T ss_pred             ceecCCc--cccccCCccccCHhHh
Confidence            9866542  3346899999999953

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=5.2e-34  Score=218.41  Aligned_cols=186  Identities=20%  Similarity=0.293  Sum_probs=148.6

Q ss_pred             CCCCCcccccCHHHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccc
Q 028725            5 ALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVS   84 (205)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~   84 (205)
                      ....|+........+....++|++.+.||+|+||.||+|.+.++..||+|+++.. ....+.+.+|+.+++.++||||++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~   83 (283)
T 3gen_A            5 SKNAPSTAGLGYGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQ   83 (283)
T ss_dssp             -----------CCTTBCCGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTT-SBCHHHHHHHHHHHHTCCCTTBCC
T ss_pred             cCCCccccCCCCCCccCCHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCC-CCCHHHHHHHHHHHhcCCCCCEee
Confidence            3344444555555666677899999999999999999999888889999999744 344577889999999999999999


Q ss_pred             cccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEE
Q 028725           85 ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL  164 (205)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nil  164 (205)
                      +++++.+       ....+++||++++++|.+++.... ..+++..++.++.|++.||.|||+   .+++|+||||+||+
T Consensus        84 ~~~~~~~-------~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nil  152 (283)
T 3gen_A           84 LYGVCTK-------QRPIFIITEYMANGCLLNYLREMR-HRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCL  152 (283)
T ss_dssp             EEEEECS-------SSSEEEEECCCTTCBHHHHHHCGG-GCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCSGGGEE
T ss_pred             EEEEEec-------CCCeEEEEeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCccceEE
Confidence            9998865       567999999999999999997633 368999999999999999999999   79999999999999


Q ss_pred             eCCCCceeEcCCCchhhcccccc--cccccccccccCCCC
Q 028725          165 LDQNLVAKISSYNLPLLAENAEK--VGHVTPYSGSINPTN  202 (205)
Q Consensus       165 v~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~aPE~  202 (205)
                      ++.++.++|+|||++........  .....+|..|+|||.
T Consensus       153 i~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~  192 (283)
T 3gen_A          153 VNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEV  192 (283)
T ss_dssp             ECTTSCEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHH
T ss_pred             EcCCCCEEEccccccccccccccccccCCccCcccCCHHH
Confidence            99999999999999987665432  223466778999996

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=9.1e-34  Score=235.13  Aligned_cols=172  Identities=19%  Similarity=0.265  Sum_probs=151.9

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ..++|++.+.||+|+||.||+|... +|+.||+|++.+.   .......+.+|+.+++.++||||+++.+.+.+      
T Consensus       182 ~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~------  255 (576)
T 2acx_A          182 TKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYET------  255 (576)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEEC------
T ss_pred             cccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEee------
Confidence            3467999999999999999999964 6999999999654   24456678899999999999999999998865      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ...+++||||+++|+|.+++.......+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||
T Consensus       256 -~~~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~---~gIvHrDLKPeNILld~~g~vKL~DFG  331 (576)
T 2acx_A          256 -KDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHR---ERIVYRDLKPENILLDDHGHIRISDLG  331 (576)
T ss_dssp             -SSEEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCT
T ss_pred             -CCEEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeccCCchheEEEeCCCCeEEEecc
Confidence             6789999999999999999987654569999999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccccccccccccccCCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +++............||++|+|||..
T Consensus       332 la~~~~~~~~~~~~~GT~~Y~APEvl  357 (576)
T 2acx_A          332 LAVHVPEGQTIKGRVGTVGYMAPEVV  357 (576)
T ss_dssp             TCEECCTTCCEECCCSCGGGCCHHHH
T ss_pred             cceecccCccccccCCCccccCHHHH
Confidence            99877765555556899999999964

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=1.9e-33  Score=219.47  Aligned_cols=179  Identities=17%  Similarity=0.331  Sum_probs=144.7

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeeccc----
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD----   95 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~----   95 (205)
                      ..++|++.+.||+|+||.||+|... +++.||+|+++... ....+.+.+|+.+++.++||||+++++.+.+....    
T Consensus         4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~   83 (332)
T 3qd2_B            4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQE   83 (332)
T ss_dssp             HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHH
T ss_pred             hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhh
Confidence            3578999999999999999999965 79999999997654 33457789999999999999999999987652210    


Q ss_pred             ----------------------------------------------CCCCCeEEEEEeecCCCcHHHhhccCCC-CCCCH
Q 028725           96 ----------------------------------------------DSSVSRIFLIFEYVPNGTLRSWISGHAW-QSLTW  128 (205)
Q Consensus        96 ----------------------------------------------~~~~~~~~lv~e~~~~~~L~~~~~~~~~-~~~~~  128 (205)
                                                                    .......+++|||+++++|.+++..... ...++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~  163 (332)
T 3qd2_B           84 EMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREH  163 (332)
T ss_dssp             HHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCH
T ss_pred             hhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhh
Confidence                                                          0112348999999999999999986532 24566


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccccc-------------ccccccccc
Q 028725          129 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE-------------KVGHVTPYS  195 (205)
Q Consensus       129 ~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~-------------~~~~~~~~~  195 (205)
                      ..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++......             ......+|.
T Consensus       164 ~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  240 (332)
T 3qd2_B          164 GVCLHIFIQIAEAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTK  240 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CG
T ss_pred             HHHHHHHHHHHHHHHHHHh---CCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCc
Confidence            6788999999999999999   799999999999999999999999999998766542             223347999


Q ss_pred             cccCCCCC
Q 028725          196 GSINPTNS  203 (205)
Q Consensus       196 ~~~aPE~~  203 (205)
                      .|+|||..
T Consensus       241 ~y~aPE~~  248 (332)
T 3qd2_B          241 LYMSPEQI  248 (332)
T ss_dssp             GGSCHHHH
T ss_pred             CccChHHh
Confidence            99999963

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=9.3e-34  Score=223.09  Aligned_cols=173  Identities=23%  Similarity=0.345  Sum_probs=147.3

Q ss_pred             HHHHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhcc-CCCcccccccceeeec
Q 028725           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECY   93 (205)
Q Consensus        19 ~~~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~   93 (205)
                      .....++|.+.+.||+|+||.||+|... +++.||+|++++..   ......+..|..++..+ +||||+++.+.+.+  
T Consensus        12 ~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~--   89 (345)
T 1xjd_A           12 IKLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQT--   89 (345)
T ss_dssp             ----CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEEC--
T ss_pred             CCCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEe--
Confidence            3456789999999999999999999965 68899999997542   44566778899888876 89999999998866  


Q ss_pred             ccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeE
Q 028725           94 FDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  173 (205)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l  173 (205)
                           ....++||||+++|+|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|
T Consensus        90 -----~~~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~vkL  159 (345)
T 1xjd_A           90 -----KENLFFVMEYLNGGDLMYHIQSCH--KFDLSRATFYAAEIILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKI  159 (345)
T ss_dssp             -----SSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEE
T ss_pred             -----CCEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCChhhEEECCCCCEEE
Confidence                 678999999999999999997643  68899999999999999999999   79999999999999999999999


Q ss_pred             cCCCchhhccc-ccccccccccccccCCCCC
Q 028725          174 SSYNLPLLAEN-AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       174 ~Dfg~a~~~~~-~~~~~~~~~~~~~~aPE~~  203 (205)
                      +|||+++.... ........||+.|+|||..
T Consensus       160 ~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~  190 (345)
T 1xjd_A          160 ADFGMCKENMLGDAKTNTFCGTPDYIAPEIL  190 (345)
T ss_dssp             CCCTTCBCCCCTTCCBCCCCSCGGGCCHHHH
T ss_pred             eEChhhhhcccCCCcccCCCCCcccCChhhh
Confidence            99999976433 2344556899999999963

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=1.5e-33  Score=225.09  Aligned_cols=170  Identities=17%  Similarity=0.251  Sum_probs=149.3

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      .++|++.+.||+|+||.||+|... +++.+|+|++..........+.+|+.+++.++||||+++++++.+       ...
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-------~~~  122 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFED-------KYE  122 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEEC-------SSE
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEe-------CCE
Confidence            467999999999999999999964 688999999976554455678899999999999999999998865       678


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC--CCceeEcCCCch
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ--NLVAKISSYNLP  179 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~--~~~~~l~Dfg~a  179 (205)
                      .++||||+++++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.  .+.++|+|||++
T Consensus       123 ~~lv~E~~~gg~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~~vkL~DFG~a  198 (387)
T 1kob_A          123 MVLILEFLSGGELFDRIAAED-YKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGLA  198 (387)
T ss_dssp             EEEEEECCCCCBHHHHTTCTT-CCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTCCCEEECCCTTC
T ss_pred             EEEEEEcCCCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccchHHeEEecCCCCceEEEecccc
Confidence            999999999999999987543 468999999999999999999999   79999999999999984  478999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +............+|..|+|||..
T Consensus       199 ~~~~~~~~~~~~~gt~~y~aPE~~  222 (387)
T 1kob_A          199 TKLNPDEIVKVTTATAEFAAPEIV  222 (387)
T ss_dssp             EECCTTSCEEEECSSGGGCCHHHH
T ss_pred             eecCCCcceeeeccCCCccCchhc
Confidence            887765555556899999999964

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=1.2e-33  Score=223.91  Aligned_cols=170  Identities=21%  Similarity=0.301  Sum_probs=148.6

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ..++|++.+.||+|+||.||+|... +++.||+|++.....  ...+.+.+|+.+++.++||||+++++++.+       
T Consensus        27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-------   99 (362)
T 2bdw_A           27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQE-------   99 (362)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC-------
T ss_pred             cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-------
Confidence            3568999999999999999999964 689999999975532  335678899999999999999999998876       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC---CceeEcC
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN---LVAKISS  175 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~---~~~~l~D  175 (205)
                      ....++|||++++++|.+.+..+.  .+++..++.++.|++.||.|||+   .+|+||||||+||+++.+   +.++|+|
T Consensus       100 ~~~~~lv~e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~kl~D  174 (362)
T 2bdw_A          100 ESFHYLVFDLVTGGELFEDIVARE--FYSEADASHCIQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLAD  174 (362)
T ss_dssp             SSEEEEEECCCCSCBHHHHHTTCS--CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEESCSSTTCCEEECC
T ss_pred             CCEEEEEEecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCchHHEEEecCCCCCCEEEee
Confidence            678999999999999999987654  68999999999999999999999   799999999999999865   4599999


Q ss_pred             CCchhhcccccccccccccccccCCCCC
Q 028725          176 YNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ||++.............||+.|+|||..
T Consensus       175 fG~a~~~~~~~~~~~~~gt~~y~aPE~~  202 (362)
T 2bdw_A          175 FGLAIEVNDSEAWHGFAGTPGYLSPEVL  202 (362)
T ss_dssp             CTTCBCCTTCCSCCCSCSCTTTCCHHHH
T ss_pred             cCcceEecCCcccccCCCCccccCHHHH
Confidence            9999887766655567899999999964

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=9e-34  Score=223.24  Aligned_cols=169  Identities=20%  Similarity=0.294  Sum_probs=146.0

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCc---CHHHHHHHHHHHhcc-CCCcccccccceeeecccCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH---STRNFMHHIELISKL-RHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .++|++.+.||+|+||.||+|... +++.||+|++++....   ....+.+|..++..+ +||||+++.+.+.+      
T Consensus         8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~------   81 (345)
T 3a8x_A            8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT------   81 (345)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC------
T ss_pred             hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEe------
Confidence            478999999999999999999964 5889999999765322   345577899999887 89999999998866      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ....++||||+++++|.+++....  .+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||
T Consensus        82 -~~~~~lv~e~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~DFG  155 (345)
T 3a8x_A           82 -ESRLFFVIEYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYG  155 (345)
T ss_dssp             -SSEEEEEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCGG
T ss_pred             -CCEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEECCCCCEEEEecc
Confidence             678999999999999999987653  68999999999999999999999   799999999999999999999999999


Q ss_pred             chhhcc-cccccccccccccccCCCCC
Q 028725          178 LPLLAE-NAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~-~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +++... .........||+.|+|||..
T Consensus       156 ~a~~~~~~~~~~~~~~gt~~y~aPE~~  182 (345)
T 3a8x_A          156 MCKEGLRPGDTTSTFCGTPNYIAPEIL  182 (345)
T ss_dssp             GCBCSCCTTCCBCCCCSCGGGCCHHHH
T ss_pred             ccccccCCCCcccccCCCccccCcccc
Confidence            997643 33344556899999999963

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.8e-33  Score=216.94  Aligned_cols=169  Identities=20%  Similarity=0.323  Sum_probs=141.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCc---CHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSH---STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .++|++.+.||+|+||.||+|.. .++..||+|++......   ..+.+.+|+..++.++||||+++++++..       
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~-------   82 (294)
T 4eqm_A           10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEE-------   82 (294)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEEC-------
T ss_pred             hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeee-------
Confidence            46899999999999999999995 46889999998654332   34678899999999999999999998865       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      .+..+++|||+++++|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+
T Consensus        83 ~~~~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~  157 (294)
T 4eqm_A           83 DDCYYLVMEYIEGPTLSEYIESHG--PLSVDTAINFTNQILDGIKHAHD---MRIVHRDIKPQNILIDSNKTLKIFDFGI  157 (294)
T ss_dssp             SSEEEEEEECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCSS
T ss_pred             CCeEEEEEeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEEeCCC
Confidence            678999999999999999997654  68999999999999999999999   7999999999999999999999999999


Q ss_pred             hhhccccc--ccccccccccccCCCCC
Q 028725          179 PLLAENAE--KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~--~~~~~~~~~~~~aPE~~  203 (205)
                      +.......  ......||..|+|||..
T Consensus       158 ~~~~~~~~~~~~~~~~gt~~y~aPE~~  184 (294)
T 4eqm_A          158 AKALSETSLTQTNHVLGTVQYFSPEQA  184 (294)
T ss_dssp             STTC-------------CCSSCCHHHH
T ss_pred             ccccccccccccCccccCccccCHhHh
Confidence            98766543  23335799999999963

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=218.91  Aligned_cols=172  Identities=22%  Similarity=0.336  Sum_probs=149.3

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|++.+.||+|+||.||+|... +++.||+|+++... ....+.+.+|+.+++.++||||+++++++..     ....
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~   82 (319)
T 4euu_A            8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEE-----TTTR   82 (319)
T ss_dssp             SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----TTTC
T ss_pred             CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeec-----CCCc
Confidence            467999999999999999999965 58999999997543 3456778899999999999999999998765     2344


Q ss_pred             eEEEEEeecCCCcHHHhhccCCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEe----CCCCceeEcC
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAW-QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL----DQNLVAKISS  175 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv----~~~~~~~l~D  175 (205)
                      ..++||||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+++||||||+||++    +.++.++|+|
T Consensus        83 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kL~D  159 (319)
T 4euu_A           83 HKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTD  159 (319)
T ss_dssp             CEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEECTTSCEEEEECC
T ss_pred             eEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEEeccCCCCceEEEcc
Confidence            78999999999999999986432 238999999999999999999999   799999999999999    7778899999


Q ss_pred             CCchhhcccccccccccccccccCCCC
Q 028725          176 YNLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       176 fg~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      ||+++............+|..|+|||.
T Consensus       160 fg~a~~~~~~~~~~~~~gt~~y~aPE~  186 (319)
T 4euu_A          160 FGAARELEDDEQFVSLYGTEEYLHPDM  186 (319)
T ss_dssp             CTTCEECCTTCCBCCCCSCGGGCCHHH
T ss_pred             CCCceecCCCCceeecccCCCccCHHH
Confidence            999988877666666789999999995

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=1.6e-33  Score=230.07  Aligned_cols=169  Identities=21%  Similarity=0.339  Sum_probs=150.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .++|.+++.||+|+||.||+|... +|+.||+|++....   ......+.+|+.+++.++||||+++++++..       
T Consensus        15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~-------   87 (476)
T 2y94_A           15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVIST-------   87 (476)
T ss_dssp             ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEEC-------
T ss_pred             ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-------
Confidence            478999999999999999999965 79999999996542   3456678899999999999999999998866       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....++||||+++++|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+
T Consensus        88 ~~~~~lv~E~~~gg~L~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~---~givHrDLkp~NIll~~~~~vkL~DFG~  162 (476)
T 2y94_A           88 PSDIFMVMEYVSGGELFDYICKNG--RLDEKESRRLFQQILSGVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGL  162 (476)
T ss_dssp             SSEEEEEEECCSSEEHHHHTTSSS--SCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCSGGGEEECTTCCEEECCCSS
T ss_pred             CCEEEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCCCcccccHHHEEEecCCCeEEEeccc
Confidence            568999999999999999997654  68999999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ++............||+.|+|||..
T Consensus       163 a~~~~~~~~~~~~~gt~~y~aPE~~  187 (476)
T 2y94_A          163 SNMMSDGEFLRTSCGSPNYAAPEVI  187 (476)
T ss_dssp             CEECCTTCCBCCCCSCSTTCCHHHH
T ss_pred             hhhccccccccccCCCcCeEChhhc
Confidence            9887766655667899999999963

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.7e-33  Score=214.20  Aligned_cols=170  Identities=21%  Similarity=0.350  Sum_probs=147.7

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ..++|++.+.||+|+||.||+|...+++.||+|++... ....+.+.+|+.++++++||||+++++++.+       ...
T Consensus         8 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-------~~~   79 (269)
T 4hcu_A            8 DPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-------QAP   79 (269)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTT-SBCHHHHHHHHHHHHTCCCTTBCCEEEEECS-------SSS
T ss_pred             ChhhceeeheecCCCccEEEEEEecCCCeEEEEEeccc-ccCHHHHHHHHHHHHhCCCCCEeeEEEEEec-------CCc
Confidence            45789999999999999999999888889999999744 3445678999999999999999999998865       567


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .+++|||+++++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++..
T Consensus        80 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~  155 (269)
T 4hcu_A           80 ICLVFEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRF  155 (269)
T ss_dssp             EEEEEECCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECGGGCEEECCTTGGGG
T ss_pred             eEEEEEeCCCCcHHHHHHhcC-cccCHHHHHHHHHHHHHHHHHHHh---CCeecCCcchheEEEcCCCCEEecccccccc
Confidence            999999999999999997644 468999999999999999999999   7999999999999999999999999999987


Q ss_pred             ccccc--ccccccccccccCCCCC
Q 028725          182 AENAE--KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~--~~~~~~~~~~~~aPE~~  203 (205)
                      .....  ......++..|+|||..
T Consensus       156 ~~~~~~~~~~~~~~~~~y~aPE~~  179 (269)
T 4hcu_A          156 VLDDQYTSSTGTKFPVKWASPEVF  179 (269)
T ss_dssp             BCCHHHHSTTSTTCCGGGCCHHHH
T ss_pred             ccccccccccCcccccccCCHHHh
Confidence            66543  22334667789999963

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=1.4e-33  Score=220.23  Aligned_cols=170  Identities=21%  Similarity=0.296  Sum_probs=145.3

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ..++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+.+++.++||||+++++.+.+       .
T Consensus         5 ~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-------~   77 (323)
T 3tki_A            5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRRE-------G   77 (323)
T ss_dssp             TTTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEEC-------S
T ss_pred             HhhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEec-------C
Confidence            3578999999999999999999965 68999999997553 2334668899999999999999999998866       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++||||+++++|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++
T Consensus        78 ~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kl~Dfg~a  152 (323)
T 3tki_A           78 NIQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLA  152 (323)
T ss_dssp             SEEEEEEECCTTEEGGGGSBTTT--BCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred             CeEEEEEEcCCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCccccccchHHEEEeCCCCEEEEEeecc
Confidence            78999999999999999987654  68999999999999999999999   79999999999999999999999999999


Q ss_pred             hhccccc---ccccccccccccCCCCC
Q 028725          180 LLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      .......   ......||..|+|||..
T Consensus       153 ~~~~~~~~~~~~~~~~gt~~y~aPE~~  179 (323)
T 3tki_A          153 TVFRYNNRERLLNKMCGTLPYVAPELL  179 (323)
T ss_dssp             EECEETTEECCBCSCCSCGGGSCHHHH
T ss_pred             ceeccCCcccccCCCccCcCccCcHHh
Confidence            7665332   23346899999999964

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=1.6e-33  Score=222.17  Aligned_cols=167  Identities=17%  Similarity=0.271  Sum_probs=147.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .++|++.+.||+|+||.||+|... +|+.||+|+++..   .......+.+|+.+++.++||||+++.+.+.+       
T Consensus        40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------  112 (350)
T 1rdq_E           40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKD-------  112 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-------
T ss_pred             HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc-------
Confidence            367999999999999999999964 6899999999654   24556778899999999999999999998865       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....++||||+++++|.+++....  .+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||+
T Consensus       113 ~~~~~lv~e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~DFg~  187 (350)
T 1rdq_E          113 NSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGF  187 (350)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             CCEEEEEEcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCcccccCccceEEECCCCCEEEccccc
Confidence            678999999999999999998653  68999999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ++.....  .....||+.|+|||..
T Consensus       188 a~~~~~~--~~~~~gt~~y~aPE~~  210 (350)
T 1rdq_E          188 AKRVKGR--TWTLCGTPEALAPEII  210 (350)
T ss_dssp             CEECSSC--BCCCEECGGGCCHHHH
T ss_pred             ceeccCC--cccccCCccccCHHHh
Confidence            9866543  3346899999999963

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=3e-33  Score=215.78  Aligned_cols=171  Identities=18%  Similarity=0.294  Sum_probs=142.2

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCC--------------------------cCHHHHHHHHHHH
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS--------------------------HSTRNFMHHIELI   74 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~--------------------------~~~~~~~~e~~~l   74 (205)
                      ..++|++.+.||+|+||.||+|.. .+++.||+|++.....                          ...+.+.+|+.++
T Consensus        11 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l   90 (298)
T 2zv2_A           11 QLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAIL   90 (298)
T ss_dssp             EETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHH
T ss_pred             eecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHH
Confidence            357899999999999999999995 4688999999965431                          1235688999999


Q ss_pred             hccCCCcccccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcee
Q 028725           75 SKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVF  154 (205)
Q Consensus        75 ~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~  154 (205)
                      +.++||||+++.+++.+     ......++|||++++++|.+++..   ..+++..++.++.|++.||.|||+   .+++
T Consensus        91 ~~l~h~~iv~~~~~~~~-----~~~~~~~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~iv  159 (298)
T 2zv2_A           91 KKLDHPNVVKLVEVLDD-----PNEDHLYMVFELVNQGPVMEVPTL---KPLSEDQARFYFQDLIKGIEYLHY---QKII  159 (298)
T ss_dssp             HTCCCTTBCCEEEEEEC-----SSSSEEEEEEECCTTCBSCCSSCS---SCCCHHHHHHHHHHHHHHHHHHHH---TTEE
T ss_pred             HhCCCCCCCeEEEEEEc-----CCCCEEEEEEecCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCee
Confidence            99999999999998764     235679999999999999886543   368999999999999999999999   7999


Q ss_pred             ecCCccccEEeCCCCceeEcCCCchhhccccc-ccccccccccccCCCCC
Q 028725          155 SNNLKITDILLDQNLVAKISSYNLPLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       155 h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ||||||+||+++.++.++|+|||+++...... ......+|..|+|||..
T Consensus       160 H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~  209 (298)
T 2zv2_A          160 HRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESL  209 (298)
T ss_dssp             CCCCCGGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGC
T ss_pred             ccCCCHHHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhh
Confidence            99999999999999999999999998765433 23445899999999975

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=1.7e-33  Score=222.96  Aligned_cols=169  Identities=18%  Similarity=0.223  Sum_probs=137.6

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ..++|++.+.||+|+||.||++... +++.||+|++.... .....+.+|+.+++.++||||+++.+++..       ..
T Consensus        18 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-------~~   89 (361)
T 3uc3_A           18 DSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-AIDENVQREIINHRSLRHPNIVRFKEVILT-------PT   89 (361)
T ss_dssp             CTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST-TSCHHHHHHHHHHHHCCCTTBCCEEEEEEC-------SS
T ss_pred             CCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc-cccHHHHHHHHHHHhCCCCCCCcEEEEEee-------CC
Confidence            3578999999999999999999965 68999999997543 334668899999999999999999999876       67


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc--eeEcCCCc
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV--AKISSYNL  178 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~--~~l~Dfg~  178 (205)
                      ..++||||+++++|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||+++.++.  ++|+|||+
T Consensus        90 ~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~ql~~~L~~LH~---~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~  164 (361)
T 3uc3_A           90 HLAIIMEYASGGELYERICNAG--RFSEDEARFFFQQLLSGVSYCHS---MQICHRDLKLENTLLDGSPAPRLKICDFGY  164 (361)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTCCSCCCCGGGEEECSSSSCCEEECCCCC
T ss_pred             EEEEEEEeCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCCceEEEeecCc
Confidence            8999999999999999987653  68999999999999999999999   79999999999999987765  99999999


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ++............||+.|+|||..
T Consensus       165 a~~~~~~~~~~~~~gt~~y~aPE~~  189 (361)
T 3uc3_A          165 SKSSVLHSQPKSTVGTPAYIAPEVL  189 (361)
T ss_dssp             C---------------CTTSCHHHH
T ss_pred             cccccccCCCCCCcCCCCcCChhhh
Confidence            9866555555567899999999963

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=1.6e-33  Score=222.45  Aligned_cols=171  Identities=19%  Similarity=0.269  Sum_probs=147.3

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhcc-CCCcccccccceeeeccc
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFD   95 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~   95 (205)
                      ...++|++.+.||+|+||.||+|... +++.||+|++++.   .......+..|..++..+ .||+|+++.+.+.+    
T Consensus        17 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~----   92 (353)
T 2i0e_A           17 MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT----   92 (353)
T ss_dssp             --CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEEC----
T ss_pred             CchHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEc----
Confidence            45688999999999999999999965 4889999999754   245567788899999888 79999999998865    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                         ....++||||+++++|.+++....  .+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.++|+|
T Consensus        93 ---~~~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~vkL~D  164 (353)
T 2i0e_A           93 ---MDRLYFVMEYVNGGDLMYHIQQVG--RFKEPHAVFYAAEIAIGLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIAD  164 (353)
T ss_dssp             ---SSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECC
T ss_pred             ---CCEEEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCEEeccCCHHHEEEcCCCcEEEEe
Confidence               678999999999999999998653  68999999999999999999999   7999999999999999999999999


Q ss_pred             CCchhhccc-ccccccccccccccCCCCC
Q 028725          176 YNLPLLAEN-AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~-~~~~~~~~~~~~~~aPE~~  203 (205)
                      ||+++.... ........||+.|+|||..
T Consensus       165 FG~a~~~~~~~~~~~~~~gt~~y~aPE~~  193 (353)
T 2i0e_A          165 FGMCKENIWDGVTTKTFCGTPDYIAPEII  193 (353)
T ss_dssp             CTTCBCCCCTTCCBCCCCSCGGGCCHHHH
T ss_pred             CCcccccccCCcccccccCCccccChhhh
Confidence            999976432 3344556899999999964

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=3.7e-33  Score=213.03  Aligned_cols=170  Identities=15%  Similarity=0.190  Sum_probs=152.1

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ..++|++.+.||+|+||.||+|... ++..+++|.+........+.+.+|+.+++.++||||+++.+.+.+       ..
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-------~~   79 (277)
T 3f3z_A            7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFED-------NT   79 (277)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-------SS
T ss_pred             hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEec-------CC
Confidence            3578999999999999999999965 477899999987766778889999999999999999999998865       67


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEe---CCCCceeEcCCC
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL---DQNLVAKISSYN  177 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv---~~~~~~~l~Dfg  177 (205)
                      ..++||||+++++|.+++....  .+++..++.++.|++.||.|||+   .+++|+||||+||++   +.++.++|+|||
T Consensus        80 ~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg  154 (277)
T 3f3z_A           80 DIYLVMELCTGGELFERVVHKR--VFRESDAARIMKDVLSAVAYCHK---LNVAHRDLKPENFLFLTDSPDSPLKLIDFG  154 (277)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSTTCCEEECCCT
T ss_pred             eEEEEEeccCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHEEEecCCCCCcEEEEecc
Confidence            8999999999999999887653  68999999999999999999999   799999999999999   788999999999


Q ss_pred             chhhcccccccccccccccccCCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ++.............+|..|+|||..
T Consensus       155 ~~~~~~~~~~~~~~~~t~~y~aPE~~  180 (277)
T 3f3z_A          155 LAARFKPGKMMRTKVGTPYYVSPQVL  180 (277)
T ss_dssp             TCEECCTTSCBCCCCSCTTTCCHHHH
T ss_pred             cceeccCccchhccCCCCCccChHHh
Confidence            99877766666667899999999964

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=3e-33  Score=217.27  Aligned_cols=170  Identities=17%  Similarity=0.285  Sum_probs=143.6

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ..++|++.+.||+|+||.||+|...+++.||+|++.....  .....+.+|+.+++.++||||+++++++.+       .
T Consensus        19 l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------~   91 (311)
T 3niz_A           19 LMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHS-------E   91 (311)
T ss_dssp             SSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECC-------S
T ss_pred             hHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEcc-------C
Confidence            4588999999999999999999988899999999975532  234678899999999999999999998865       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++||||+++ +|.+.+.... ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++
T Consensus        92 ~~~~lv~e~~~~-~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a  166 (311)
T 3niz_A           92 RCLTLVFEFMEK-DLKKVLDENK-TGLQDSQIKIYLYQLLRGVAHCHQ---HRILHRDLKPQNLLINSDGALKLADFGLA  166 (311)
T ss_dssp             SCEEEEEECCSE-EHHHHHHTCT-TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             CEEEEEEcCCCC-CHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCchHhEEECCCCCEEEccCcCc
Confidence            689999999975 8888877554 468999999999999999999999   79999999999999999999999999999


Q ss_pred             hhccccc-ccccccccccccCCCCC
Q 028725          180 LLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      +...... ......+|..|+|||..
T Consensus       167 ~~~~~~~~~~~~~~~t~~y~aPE~~  191 (311)
T 3niz_A          167 RAFGIPVRSYTHEVVTLWYRAPDVL  191 (311)
T ss_dssp             EETTSCCC---CCCCCCTTCCHHHH
T ss_pred             eecCCCcccccCCcccCCcCCHHHh
Confidence            8765432 33445889999999953

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=2.2e-33  Score=219.50  Aligned_cols=170  Identities=16%  Similarity=0.271  Sum_probs=137.3

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe----cCCcEEEEEEecccC----CcCHHHHHHHHHHHhccCCCcccccccceeeec
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL----KNGTFIAIRCLKMKK----SHSTRNFMHHIELISKLRHCHLVSALGHCFECY   93 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~----~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   93 (205)
                      ..++|++.+.||+|+||.||++..    .+++.||+|+++...    ......+.+|+.+++.++||||+++++.+..  
T Consensus        15 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--   92 (327)
T 3a62_A           15 RPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQT--   92 (327)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEEC--
T ss_pred             CHHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEc--
Confidence            357899999999999999999996    468999999997642    2344567789999999999999999998865  


Q ss_pred             ccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeE
Q 028725           94 FDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  173 (205)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l  173 (205)
                           .+..++||||+++++|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|
T Consensus        93 -----~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~Nill~~~~~~kl  162 (327)
T 3a62_A           93 -----GGKLYLILEYLSGGELFMQLEREG--IFMEDTACFYLAEISMALGHLHQ---KGIIYRDLKPENIMLNHQGHVKL  162 (327)
T ss_dssp             -----SSCEEEEEECCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCTTTEEECTTSCEEE
T ss_pred             -----CCEEEEEEeCCCCCcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHh---CCEEcccCCHHHeEECCCCcEEE
Confidence                 668999999999999999997653  68899999999999999999999   79999999999999999999999


Q ss_pred             cCCCchhhcccc-cccccccccccccCCCCC
Q 028725          174 SSYNLPLLAENA-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       174 ~Dfg~a~~~~~~-~~~~~~~~~~~~~aPE~~  203 (205)
                      +|||+++..... .......||..|+|||..
T Consensus       163 ~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~  193 (327)
T 3a62_A          163 TDFGLCKESIHDGTVTHTFCGTIEYMAPEIL  193 (327)
T ss_dssp             CCCSCC----------CTTSSCCTTSCHHHH
T ss_pred             EeCCcccccccCCccccccCCCcCccCHhhC
Confidence            999999764433 233446899999999964

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=4e-33  Score=214.18  Aligned_cols=168  Identities=19%  Similarity=0.301  Sum_probs=141.9

Q ss_pred             cCCCcceeeccCcceEEEEEEecCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ++|++.+.||+|+||.||+|...+++.+|+|++....  ......+.+|+.+++.++||||+++++++..       ...
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~~   74 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHT-------KKR   74 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEEC-------SSC
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEcc-------CCe
Confidence            6799999999999999999998779999999996543  2335678899999999999999999998865       568


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .+++||++++ +|.+++.... ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++..
T Consensus        75 ~~lv~e~~~~-~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  149 (288)
T 1ob3_A           75 LVLVFEHLDQ-DLKKLLDVCE-GGLESVTAKSFLLQLLNGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARA  149 (288)
T ss_dssp             EEEEEECCSE-EHHHHHHTST-TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHHHH
T ss_pred             EEEEEEecCC-CHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEEeECccccc
Confidence            9999999976 9999887543 468899999999999999999999   7999999999999999999999999999987


Q ss_pred             ccccc-ccccccccccccCCCCC
Q 028725          182 AENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ..... ......+|..|+|||..
T Consensus       150 ~~~~~~~~~~~~~t~~y~aPE~~  172 (288)
T 1ob3_A          150 FGIPVRKYTHEIVTLWYRAPDVL  172 (288)
T ss_dssp             HCC---------CCCTTCCHHHH
T ss_pred             cCccccccccccccccccCchhe
Confidence            65432 33445789999999953

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=7.7e-33  Score=212.94  Aligned_cols=168  Identities=16%  Similarity=0.283  Sum_probs=143.2

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ++|++.+.||+|+||.||+|... +++.||+|++.....  .....+.+|+.+++.++||||+++.+++.+       ..
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~   74 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHS-------DK   74 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-------TT
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEe-------CC
Confidence            68999999999999999999964 689999999976532  234678899999999999999999999876       67


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++|||++++ ++.+.+.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++.
T Consensus        75 ~~~lv~e~~~~-~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lH~---~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~  149 (292)
T 3o0g_A           75 KLTLVFEFCDQ-DLKKYFDSCN-GDLDPEIVKSFLFQLLKGLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGLAR  149 (292)
T ss_dssp             EEEEEEECCSE-EHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             EEEEEEecCCC-CHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeecccce
Confidence            89999999976 6666555432 478999999999999999999999   799999999999999999999999999998


Q ss_pred             hccccc-ccccccccccccCCCCC
Q 028725          181 LAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ...... ......+|..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~t~~y~aPE~~  173 (292)
T 3o0g_A          150 AFGIPVRCYSAEVVTLWYRPPDVL  173 (292)
T ss_dssp             ECCSCCSCCCSCCSCGGGCCHHHH
T ss_pred             ecCCccccccCCccccCCcChHHH
Confidence            765433 33445889999999953

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=2.4e-33  Score=222.82  Aligned_cols=170  Identities=18%  Similarity=0.292  Sum_probs=137.9

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHH-HhccCCCcccccccceeeecccC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIEL-ISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~-l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      ..++|++.+.||+|+||.||+|... +++.||+|++++..   ......+.+|..+ ++.++||||+++.+.+.+     
T Consensus        36 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~-----  110 (373)
T 2r5t_A           36 KPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQT-----  110 (373)
T ss_dssp             CGGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEEC-----
T ss_pred             ChhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEe-----
Confidence            3578999999999999999999965 58899999997653   2234455666665 567899999999998876     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                        ....++||||+++++|.+++....  .+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.++|+||
T Consensus       111 --~~~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~ikL~DF  183 (373)
T 2r5t_A          111 --ADKLYFVLDYINGGELFYHLQRER--CFLEPRARFYAAEIASALGYLHS---LNIVYRDLKPENILLDSQGHIVLTDF  183 (373)
T ss_dssp             --SSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCC
T ss_pred             --CCEEEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEECCCCCEEEeeC
Confidence              678999999999999999987653  68899999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhccc-ccccccccccccccCCCCC
Q 028725          177 NLPLLAEN-AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~-~~~~~~~~~~~~~~aPE~~  203 (205)
                      |+++.... ........||+.|+|||..
T Consensus       184 G~a~~~~~~~~~~~~~~gt~~y~aPE~~  211 (373)
T 2r5t_A          184 GLCKENIEHNSTTSTFCGTPEYLAPEVL  211 (373)
T ss_dssp             CBCGGGBCCCCCCCSBSCCCCCCCHHHH
T ss_pred             ccccccccCCCccccccCCccccCHHHh
Confidence            99986433 3344557899999999963

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=4.5e-33  Score=217.57  Aligned_cols=170  Identities=22%  Similarity=0.409  Sum_probs=141.2

Q ss_pred             hcCCCcceeeccCcceEEEEEEec----CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~----~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .++|++.+.||+|+||.||+|...    .+..||+|+++... ....+.+.+|+.+++.++||||+++++++.+      
T Consensus        48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~------  121 (325)
T 3kul_A           48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTR------  121 (325)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECG------
T ss_pred             hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEe------
Confidence            467899999999999999999964    34569999997542 3345678899999999999999999998865      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ....++||||+++++|.+++.... ..+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||
T Consensus       122 -~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg  196 (325)
T 3kul_A          122 -GRLAMIVTEYMENGSLDTFLRTHD-GQFTIMQLVGMLRGVGAGMRYLSD---LGYVHRDLAARNVLVDSNLVCKVSDFG  196 (325)
T ss_dssp             -GGCCEEEEECCTTCBHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCS
T ss_pred             -CCccEEEeeCCCCCcHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCcceEEECCCCCEEECCCC
Confidence             567899999999999999997543 468999999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccc----cccccccccccCCCCC
Q 028725          178 LPLLAENAEK----VGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~----~~~~~~~~~~~aPE~~  203 (205)
                      +++.......    .....+|..|+|||..
T Consensus       197 ~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~  226 (325)
T 3kul_A          197 LSRVLEDDPDAAYTTTGGKIPIRWTAPEAI  226 (325)
T ss_dssp             SCEECC----CCEECC---CCGGGSCHHHH
T ss_pred             cccccccCccceeeccCCCCcccccCHhHh
Confidence            9987655332    2223557789999963

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=6.8e-33  Score=223.50  Aligned_cols=170  Identities=18%  Similarity=0.276  Sum_probs=137.0

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--------CcCHHHHHHHHHHHhccCCCcccccccceee
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--------SHSTRNFMHHIELISKLRHCHLVSALGHCFE   91 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--------~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   91 (205)
                      ...++|.+.+.||+|+||.||+|.. .+++.||+|++....        ......+.+|+.++++++||||+++.+++. 
T Consensus       132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-  210 (419)
T 3i6u_A          132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-  210 (419)
T ss_dssp             HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-
T ss_pred             hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-
Confidence            4468899999999999999999995 468999999996542        122335788999999999999999998763 


Q ss_pred             ecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC---
Q 028725           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN---  168 (205)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~---  168 (205)
                             ....++||||+++++|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||+++.+   
T Consensus       211 -------~~~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~NIll~~~~~~  278 (419)
T 3i6u_A          211 -------AEDYYIVLELMEGGELFDKVVGNK--RLKEATCKLYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEED  278 (419)
T ss_dssp             -------SSEEEEEEECCTTCBGGGGTSSSC--CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSSS
T ss_pred             -------cCceEEEEEcCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEecCCCc
Confidence                   346899999999999999887654  78999999999999999999999   799999999999999754   


Q ss_pred             CceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          169 LVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       169 ~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +.++|+|||+++............||+.|+|||..
T Consensus       279 ~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~  313 (419)
T 3i6u_A          279 CLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVL  313 (419)
T ss_dssp             CCEEECCSSTTTSCC-----------CTTCCTTTT
T ss_pred             ceEEEeecccceecCCCccccccCCCCCccCceee
Confidence            45999999999988776665667899999999975

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=2.8e-33  Score=222.59  Aligned_cols=165  Identities=21%  Similarity=0.275  Sum_probs=139.9

Q ss_pred             cceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEE
Q 028725           28 TSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIF  106 (205)
Q Consensus        28 ~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~  106 (205)
                      ..+.||+|+||.||+|.. .+|+.||+|+++.......+.+.+|+.+++.++||||+++++++..       .+..++||
T Consensus        93 ~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-------~~~~~lv~  165 (373)
T 2x4f_A           93 KTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFES-------KNDIVLVM  165 (373)
T ss_dssp             EEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEC-------SSEEEEEE
T ss_pred             cceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEE-------CCEEEEEE
Confidence            367899999999999995 4689999999986655566788999999999999999999998876       67899999


Q ss_pred             eecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEe--CCCCceeEcCCCchhhccc
Q 028725          107 EYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL--DQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       107 e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv--~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ||+++++|.+++.... ..+++..++.++.|++.||.|||+   .+|+||||||+||++  +.++.++|+|||+++....
T Consensus       166 E~~~~~~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~  241 (373)
T 2x4f_A          166 EYVDGGELFDRIIDES-YNLTELDTILFMKQICEGIRHMHQ---MYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKP  241 (373)
T ss_dssp             ECCTTCEEHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCT
T ss_pred             eCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEEecCCCCcEEEEeCCCceecCC
Confidence            9999999999887543 468899999999999999999999   799999999999999  5678999999999988877


Q ss_pred             ccccccccccccccCCCCC
Q 028725          185 AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 ~~~~~~~~~~~~~~aPE~~  203 (205)
                      ........+|+.|+|||..
T Consensus       242 ~~~~~~~~gt~~y~aPE~~  260 (373)
T 2x4f_A          242 REKLKVNFGTPEFLAPEVV  260 (373)
T ss_dssp             TCBCCCCCSSCTTCCHHHH
T ss_pred             ccccccccCCCcEeChhhc
Confidence            6666667899999999953

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=7.1e-33  Score=210.52  Aligned_cols=169  Identities=22%  Similarity=0.348  Sum_probs=146.3

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ..++|++.+.||+|+||.||+|...++..||+|+++.. ....+.+.+|+.+++.++||||+++++++.+       ...
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-------~~~   77 (268)
T 3sxs_A            6 KREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEG-SMSEDEFFQEAQTMMKLSHPKLVKFYGVCSK-------EYP   77 (268)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBT-TBCHHHHHHHHHHHHHCCCTTBCCEEEEECS-------SSS
T ss_pred             chhheeeeeeeccCCCceEEEEEecCceeEEEEEeccC-CCcHHHHHHHHHHHHhCCCCCEeeEEEEEcc-------CCc
Confidence            45789999999999999999999888889999999744 3445678899999999999999999998865       567


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .+++||++++++|.+++.... ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++..
T Consensus        78 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~  153 (268)
T 3sxs_A           78 IYIVTEYISNGCLLNYLRSHG-KGLEPSQLLEMCYDVCEGMAFLES---HQFIHRDLAARNCLVDRDLCVKVSDFGMTRY  153 (268)
T ss_dssp             EEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHH---TTEEESSCSGGGEEECTTCCEEECCTTCEEE
T ss_pred             eEEEEEccCCCcHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCcCcceEEECCCCCEEEccCcccee
Confidence            999999999999999997543 358999999999999999999999   7999999999999999999999999999986


Q ss_pred             cccccc--cccccccccccCCCC
Q 028725          182 AENAEK--VGHVTPYSGSINPTN  202 (205)
Q Consensus       182 ~~~~~~--~~~~~~~~~~~aPE~  202 (205)
                      ......  .....++..|+|||.
T Consensus       154 ~~~~~~~~~~~~~~~~~y~aPE~  176 (268)
T 3sxs_A          154 VLDDQYVSSVGTKFPVKWSAPEV  176 (268)
T ss_dssp             CCTTCEEECCSCCCCGGGCCHHH
T ss_pred             cchhhhhcccCCCcCcccCCHHH
Confidence            655432  223356678999996

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=5.1e-33  Score=220.38  Aligned_cols=169  Identities=15%  Similarity=0.131  Sum_probs=141.4

Q ss_pred             HhcCCCcceeeccCcceEEEEEE------ecCCcEEEEEEecccCCcCHHHHHHHHHHHhccC---CCcccccccceeee
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGR------LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR---HCHLVSALGHCFEC   92 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~------~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~---~~~i~~~~~~~~~~   92 (205)
                      ..++|.+.+.||+|+||.||+|.      ..+++.||+|+++..   ....+..|..++..+.   |+||+++.+.+.. 
T Consensus        63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~-  138 (365)
T 3e7e_A           63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLF-  138 (365)
T ss_dssp             SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC-
T ss_pred             CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeeec-
Confidence            45779999999999999999994      446889999999743   4556677777777776   8999999998876 


Q ss_pred             cccCCCCCeEEEEEeecCCCcHHHhhccC---CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC--
Q 028725           93 YFDDSSVSRIFLIFEYVPNGTLRSWISGH---AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ--  167 (205)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~--  167 (205)
                            .+..++||||+++++|.+++...   ....+++..++.++.|++.||.|||+   .+|+||||||+||+++.  
T Consensus       139 ------~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~---~~ivHrDiKp~NIll~~~~  209 (365)
T 3e7e_A          139 ------QNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHD---CEIIHGDIKPDNFILGNGF  209 (365)
T ss_dssp             ------SSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECGGG
T ss_pred             ------CCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhh---CCeecCCCCHHHEEecccc
Confidence                  66789999999999999999731   22469999999999999999999999   79999999999999998  


Q ss_pred             ---------CCceeEcCCCchhhcc---cccccccccccccccCCCCC
Q 028725          168 ---------NLVAKISSYNLPLLAE---NAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       168 ---------~~~~~l~Dfg~a~~~~---~~~~~~~~~~~~~~~aPE~~  203 (205)
                               ++.++|+|||+|+...   .........||.+|+|||..
T Consensus       210 ~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~  257 (365)
T 3e7e_A          210 LEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEML  257 (365)
T ss_dssp             TCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHH
T ss_pred             cCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHh
Confidence                     8999999999996543   33344556899999999964

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=4.5e-33  Score=221.16  Aligned_cols=171  Identities=20%  Similarity=0.410  Sum_probs=143.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEec--------CCcEEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCcccccccceeee
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK--------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFEC   92 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~--------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~   92 (205)
                      .++|.+++.||+|+||.||+|...        ++..||+|+++... ......+.+|+.+++.+ +||||+++++++.+ 
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~-  158 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ-  158 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECS-
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEcc-
Confidence            467999999999999999999852        35579999997553 23456788999999999 89999999998865 


Q ss_pred             cccCCCCCeEEEEEeecCCCcHHHhhccCC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCC
Q 028725           93 YFDDSSVSRIFLIFEYVPNGTLRSWISGHA--------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNL  158 (205)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dl  158 (205)
                            ...+++||||+++++|.+++....              ...+++..++.++.|++.||.|||+   .+++||||
T Consensus       159 ------~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDl  229 (370)
T 2psq_A          159 ------DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDL  229 (370)
T ss_dssp             ------SSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCC
T ss_pred             ------CCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCeecccc
Confidence                  567899999999999999997543              1347889999999999999999999   79999999


Q ss_pred             ccccEEeCCCCceeEcCCCchhhccccc---ccccccccccccCCCCC
Q 028725          159 KITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       159 kp~nilv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      ||+||+++.++.++|+|||+++......   ......+|..|+|||..
T Consensus       230 kp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~  277 (370)
T 2psq_A          230 AARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEAL  277 (370)
T ss_dssp             CGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHH
T ss_pred             chhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHh
Confidence            9999999999999999999998665432   22334677899999953

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=1.2e-33  Score=217.71  Aligned_cols=171  Identities=20%  Similarity=0.396  Sum_probs=142.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-----cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-----KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .++|++.+.||+|+||.||+|.+     .+++.||+|++........+.+.+|+.+++.++||||+++.+++...     
T Consensus         9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----   83 (295)
T 3ugc_A            9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSA-----   83 (295)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHH-----
T ss_pred             HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-----
Confidence            47899999999999999999984     25889999999866555567889999999999999999999987642     


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      .....++||||+++++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||
T Consensus        84 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~kl~Dfg  159 (295)
T 3ugc_A           84 GRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFG  159 (295)
T ss_dssp             HHTSCEEEEECCTTCBHHHHHHHCG-GGCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCC
T ss_pred             CCCceEEEEEeCCCCCHHHHHHhcc-cccCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHhhEEEcCCCeEEEccCc
Confidence            1345899999999999999998654 358999999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccc----cccccccccccCCCC
Q 028725          178 LPLLAENAEK----VGHVTPYSGSINPTN  202 (205)
Q Consensus       178 ~a~~~~~~~~----~~~~~~~~~~~aPE~  202 (205)
                      ++........    .....++..|+|||.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  188 (295)
T 3ugc_A          160 LTKVLPQDKEFFKVKEPGESPIFWYAPES  188 (295)
T ss_dssp             SCC-------------CTTCGGGGCCHHH
T ss_pred             ccccccCCcceeeeccCCCCccceeCcHH
Confidence            9987665432    223457778999995

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=7.5e-33  Score=228.80  Aligned_cols=171  Identities=19%  Similarity=0.270  Sum_probs=148.5

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .++|.+.+.||+|+||.||+|... +|+.||+|++.+.   .......+.+|..+++.++||||+++.+.+.+       
T Consensus       184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~-------  256 (543)
T 3c4z_A          184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFET-------  256 (543)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-------
T ss_pred             hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEee-------
Confidence            367999999999999999999964 6999999999654   23456778899999999999999999998865       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHA--WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                      ...+++||||+++++|.+++....  ...+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.++|+||
T Consensus       257 ~~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~---~gIvHrDLKP~NILl~~~g~vkL~DF  333 (543)
T 3c4z_A          257 KTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQ---RNIIYRDLKPENVLLDDDGNVRISDL  333 (543)
T ss_dssp             SSEEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCC
T ss_pred             CCEEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHH---cCCcccCCChHHEEEeCCCCEEEeec
Confidence            678999999999999999987542  3468999999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhcccccc-cccccccccccCCCCC
Q 028725          177 NLPLLAENAEK-VGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~~-~~~~~~~~~~~aPE~~  203 (205)
                      |+++....... .....||+.|+|||..
T Consensus       334 Gla~~~~~~~~~~~~~~GT~~Y~APE~l  361 (543)
T 3c4z_A          334 GLAVELKAGQTKTKGYAGTPGFMAPELL  361 (543)
T ss_dssp             TTCEECCTTCCCBCCCCSCTTTSCHHHH
T ss_pred             ceeeeccCCCcccccccCCccccChhhh
Confidence            99987665443 3345899999999964

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=1.3e-32  Score=214.54  Aligned_cols=169  Identities=19%  Similarity=0.282  Sum_probs=149.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCc------CHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH------STRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~------~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      .++|++.+.||+|+||.||+|... +|+.||+|+++.....      ..+.+.+|+.+++.++||||+++.+++.+    
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----   86 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYEN----   86 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC----
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEec----
Confidence            567999999999999999999964 6899999999765321      35678999999999999999999998865    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC----ce
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL----VA  171 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~----~~  171 (205)
                         ....+++||++++++|.+++....  .+++..++.++.|++.||.|||+   .+++|+||||+||+++.++    .+
T Consensus        87 ---~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~---~~ivH~dikp~NIl~~~~~~~~~~~  158 (321)
T 2a2a_A           87 ---RTDVVLILELVSGGELFDFLAQKE--SLSEEEATSFIKQILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHI  158 (321)
T ss_dssp             ---SSEEEEEECCCCSCBHHHHHHTCS--CEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCTTSSSCCE
T ss_pred             ---CCEEEEEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCChHHEEEecCCCCcCCE
Confidence               678999999999999999998653  78999999999999999999999   7999999999999999887    79


Q ss_pred             eEcCCCchhhcccccccccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +|+|||++.............+|..|+|||..
T Consensus       159 kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~  190 (321)
T 2a2a_A          159 KLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIV  190 (321)
T ss_dssp             EECCCTTCEECCTTCCCCCCCSCGGGCCHHHH
T ss_pred             EEccCccceecCccccccccCCCCCccCcccc
Confidence            99999999877766555667899999999963

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=4.2e-33  Score=226.01  Aligned_cols=170  Identities=19%  Similarity=0.234  Sum_probs=145.7

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ..++|++.+.||+|+||.||+|.. .+|+.+|+|++.....  ...+.+.+|+.+++.++||||+++.+.+.+       
T Consensus         9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-------   81 (444)
T 3soa_A            9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISE-------   81 (444)
T ss_dssp             HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEEC-------
T ss_pred             ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEE-------
Confidence            457899999999999999999995 4689999999976532  335668899999999999999999998865       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC---CCCceeEcC
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD---QNLVAKISS  175 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~---~~~~~~l~D  175 (205)
                      .+..++|||++.+++|.+.+..+.  .+++..+..++.|++.||.|||+   .+|+||||||+||+++   .++.++|+|
T Consensus        82 ~~~~~lv~E~~~gg~L~~~i~~~~--~~~e~~~~~i~~qil~aL~~lH~---~givHrDlKp~NIll~~~~~~~~vkL~D  156 (444)
T 3soa_A           82 EGHHYLIFDLVTGGELFEDIVARE--YYSEADASHCIQQILEAVLHCHQ---MGVVHRNLKPENLLLASKLKGAAVKLAD  156 (444)
T ss_dssp             SSEEEEEECCCBCCBHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSSTTEEESBSSTTCCEEECC
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEeccCCCCcEEEcc
Confidence            678999999999999999988664  68999999999999999999999   7999999999999998   457899999


Q ss_pred             CCchhhcccccc-cccccccccccCCCCC
Q 028725          176 YNLPLLAENAEK-VGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~~-~~~~~~~~~~~aPE~~  203 (205)
                      ||++........ .....||++|+|||..
T Consensus       157 FG~a~~~~~~~~~~~~~~gt~~Y~APE~l  185 (444)
T 3soa_A          157 FGLAIEVEGEQQAWFGFAGTPGYLSPEVL  185 (444)
T ss_dssp             CSSCBCCCTTCCBCCCSCSCGGGCCHHHH
T ss_pred             CceeEEecCCCceeecccCCcccCCHHHh
Confidence            999987665432 3446899999999964

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=1.6e-32  Score=211.72  Aligned_cols=169  Identities=19%  Similarity=0.373  Sum_probs=140.7

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhc--cCCCcccccccceeeecccCCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISK--LRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~--l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ..++|++.+.||+|+||.||+|.. +++.||+|++...   ....+..|.+++..  ++||||+++++.+....   ...
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~---~~~   78 (301)
T 3q4u_A            6 VARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSR---HSS   78 (301)
T ss_dssp             CGGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEE---TTE
T ss_pred             ccCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeecccc---CCC
Confidence            357899999999999999999988 5899999999643   34455566666655  78999999999876522   224


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhh--------cCCCCceeecCCccccEEeCCCCce
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH--------TGIVPGVFSNNLKITDILLDQNLVA  171 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh--------~~~~~~i~h~dlkp~nilv~~~~~~  171 (205)
                      ...+++|||+++++|.+++...   .+++..++.++.|++.||.|||        +   .+++||||||+||+++.++.+
T Consensus        79 ~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~---~~ivH~Dlkp~Nill~~~~~~  152 (301)
T 3q4u_A           79 TQLWLITHYHEMGSLYDYLQLT---TLDTVSCLRIVLSIASGLAHLHIEIFGTQGK---PAIAHRDLKSKNILVKKNGQC  152 (301)
T ss_dssp             EEEEEEECCCTTCBHHHHHTTC---CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCB---CEEECSCCCGGGEEECTTSCE
T ss_pred             ceeEEehhhccCCCHHHHHhhc---ccCHHHHHHHHHHHHHHHHHHHHhhhhccCC---CCeecCCCChHhEEEcCCCCE
Confidence            5689999999999999999653   6899999999999999999999        7   799999999999999999999


Q ss_pred             eEcCCCchhhcccccc-----cccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAEK-----VGHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~-----~~~~~~~~~~~aPE~~  203 (205)
                      +|+|||+++.......     .....+|..|+|||..
T Consensus       153 kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  189 (301)
T 3q4u_A          153 CIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVL  189 (301)
T ss_dssp             EECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHH
T ss_pred             EEeeCCCeeecccccccccccccccccccceeChhhh
Confidence            9999999976655432     2234899999999964

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=2.4e-33  Score=217.71  Aligned_cols=173  Identities=21%  Similarity=0.383  Sum_probs=137.7

Q ss_pred             HHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           20 EEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        20 ~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ....++|++.+.||+|+||.||+|.. ++..||+|++.....  .....+.+|+.++++++||||+++++.+.+      
T Consensus        33 ~i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~------  105 (309)
T 3p86_A           33 DIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQ------  105 (309)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS------
T ss_pred             cCChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE------
Confidence            34457899999999999999999987 488999999975532  234578899999999999999999998865      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCc--eeecCCccccEEeCCCCceeEc
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAW-QSLTWTQRISAAIGVARGIQFLHTGIVPG--VFSNNLKITDILLDQNLVAKIS  174 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~~~~~~--i~h~dlkp~nilv~~~~~~~l~  174 (205)
                       ....++||||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+  ++||||||+||+++.++.++|+
T Consensus       106 -~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~~~ivH~Dikp~NIll~~~~~~kL~  181 (309)
T 3p86_A          106 -PPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN---RNPPIVHRNLKSPNLLVDKKYTVKVC  181 (309)
T ss_dssp             -TTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHT---SSSCCCCTTCCGGGEEECTTCCEEEC
T ss_pred             -CCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHc---CCCCEECCCCChhhEEEeCCCcEEEC
Confidence             5678999999999999999986531 238899999999999999999999   68  9999999999999999999999


Q ss_pred             CCCchhhccccc-ccccccccccccCCCCC
Q 028725          175 SYNLPLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       175 Dfg~a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      |||+++...... ......+|..|+|||..
T Consensus       182 Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~  211 (309)
T 3p86_A          182 DFGLSRLKASTFLSSKSAAGTPEWMAPEVL  211 (309)
T ss_dssp             CCC-----------------CCTTSCHHHH
T ss_pred             CCCCCccccccccccccCCCCccccChhhh
Confidence            999998655442 23446899999999964

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=4.3e-33  Score=219.81  Aligned_cols=171  Identities=15%  Similarity=0.228  Sum_probs=145.5

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-----CcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-----SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      .++|++.+.||+|+||.||+|... +++.||+|+++...     ....+.+.+|+.+++.++||||+++++++.+     
T Consensus        23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-----   97 (351)
T 3c0i_A           23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSS-----   97 (351)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----
T ss_pred             ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEe-----
Confidence            467999999999999999999954 68999999986431     2356788999999999999999999998876     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc---e
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGH--AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV---A  171 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~---~  171 (205)
                        ....++||||+++++|.+.+...  .+..+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.   +
T Consensus        98 --~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivHrDlkp~NIl~~~~~~~~~v  172 (351)
T 3c0i_A           98 --DGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHD---NNIIHRDVKPHCVLLASKENSAPV  172 (351)
T ss_dssp             --TTEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECSSSTTCCE
T ss_pred             --CCEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCChHHeEEecCCCCCcE
Confidence              67899999999999998887632  22358999999999999999999999   79999999999999986554   9


Q ss_pred             eEcCCCchhhcccccc-cccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAEK-VGHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~-~~~~~~~~~~~aPE~~  203 (205)
                      +|+|||++........ .....||+.|+|||..
T Consensus       173 kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~  205 (351)
T 3c0i_A          173 KLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVV  205 (351)
T ss_dssp             EECCCTTCEECCTTSCBCCCCCSCGGGCCHHHH
T ss_pred             EEecCcceeEecCCCeeecCCcCCcCccCHHHH
Confidence            9999999987665433 3446899999999964

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.1e-33  Score=219.33  Aligned_cols=170  Identities=14%  Similarity=0.212  Sum_probs=149.0

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCC--------cCHHHHHHHHHHHhccCCCcccccccceeee
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS--------HSTRNFMHHIELISKLRHCHLVSALGHCFEC   92 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~--------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   92 (205)
                      ..++|++.+.||+|+||.||+|.. .+++.||+|+++....        .....+.+|+.+++.++||||+++++++.+ 
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~-  100 (335)
T 3dls_A           22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFEN-  100 (335)
T ss_dssp             HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEEC-
T ss_pred             cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEee-
Confidence            357899999999999999999995 4688999999976532        133457789999999999999999998865 


Q ss_pred             cccCCCCCeEEEEEeecCCC-cHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCce
Q 028725           93 YFDDSSVSRIFLIFEYVPNG-TLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVA  171 (205)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~  171 (205)
                            ....+++||++.++ +|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||+++.++.+
T Consensus       101 ------~~~~~lv~e~~~~g~~l~~~~~~~~--~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~  169 (335)
T 3dls_A          101 ------QGFFQLVMEKHGSGLDLFAFIDRHP--RLDEPLASYIFRQLVSAVGYLRL---KDIIHRDIKDENIVIAEDFTI  169 (335)
T ss_dssp             ------SSEEEEEEECCTTSCBHHHHHHTCC--CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCE
T ss_pred             ------CCEEEEEEEeCCCCccHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeEEeccCHHHEEEcCCCcE
Confidence                  67899999999776 9999998764  68999999999999999999999   799999999999999999999


Q ss_pred             eEcCCCchhhcccccccccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +|+|||++.............||..|+|||..
T Consensus       170 kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~  201 (335)
T 3dls_A          170 KLIDFGSAAYLERGKLFYTFCGTIEYCAPEVL  201 (335)
T ss_dssp             EECCCTTCEECCTTCCBCEECSCGGGCCHHHH
T ss_pred             EEeecccceECCCCCceeccCCCccccChhhh
Confidence            99999999887776666667899999999964

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=4.3e-33  Score=226.78  Aligned_cols=176  Identities=19%  Similarity=0.321  Sum_probs=150.3

Q ss_pred             CHHHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecc
Q 028725           15 SLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (205)
Q Consensus        15 ~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   94 (205)
                      ...++....++|++.+.||+|+||.||+|.+.++..||+|+++.. ....+.+.+|+.+++.++||||+++.+++.    
T Consensus       179 ~~~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~----  253 (454)
T 1qcf_A          179 EKDAWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKLHAVVT----  253 (454)
T ss_dssp             CTTCSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTT-SBCHHHHHHHHHHHTTCCCTTBCCEEEEEC----
T ss_pred             cccceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCC-CccHHHHHHHHHHHhhCCCCCEeeEEEEEe----
Confidence            345556667889999999999999999999888889999999754 345788999999999999999999998874    


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEc
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  174 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~  174 (205)
                          ....++||||+++++|.+++.......+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+
T Consensus       254 ----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~  326 (454)
T 1qcf_A          254 ----KEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIA  326 (454)
T ss_dssp             ----SSSCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCSGGGEEECTTCCEEEC
T ss_pred             ----CCccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCHHHEEECCCCcEEEe
Confidence                3468999999999999999986543468888999999999999999999   799999999999999999999999


Q ss_pred             CCCchhhcccccc--cccccccccccCCCC
Q 028725          175 SYNLPLLAENAEK--VGHVTPYSGSINPTN  202 (205)
Q Consensus       175 Dfg~a~~~~~~~~--~~~~~~~~~~~aPE~  202 (205)
                      |||+++.......  .....++..|+|||.
T Consensus       327 DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~  356 (454)
T 1qcf_A          327 DFGLARVIEDNEYTAREGAKFPIKWTAPEA  356 (454)
T ss_dssp             STTGGGGBCCHHHHTTCSSSSCGGGSCHHH
T ss_pred             eCCCceEcCCCceeccCCCcccccccCHHH
Confidence            9999987765331  222356778999995

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.4e-33  Score=215.81  Aligned_cols=168  Identities=17%  Similarity=0.174  Sum_probs=137.9

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC--cCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|++.+.||+|+||+||+|... +++.||+|++.....  ........|+..+..+ +||||+++.+++.+       .
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~-------~  129 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEE-------G  129 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-------T
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEe-------C
Confidence            67999999999999999999965 699999999865432  2233444555555554 89999999999876       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++|||++ +++|.+++.... ..+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||++
T Consensus       130 ~~~~lv~e~~-~~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kl~DFG~a  204 (311)
T 3p1a_A          130 GILYLQTELC-GPSLQQHCEAWG-ASLPEAQVWGYLRDTLLALAHLHS---QGLVHLDVKPANIFLGPRGRCKLGDFGLL  204 (311)
T ss_dssp             TEEEEEEECC-CCBHHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECGGGCEEECCCTTC
T ss_pred             CEEEEEEecc-CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEECCCCCEEEccceee
Confidence            7899999999 669988887543 468999999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      .............||.+|+|||..
T Consensus       205 ~~~~~~~~~~~~~gt~~y~aPE~~  228 (311)
T 3p1a_A          205 VELGTAGAGEVQEGDPRYMAPELL  228 (311)
T ss_dssp             EECC------CCCCCGGGCCGGGG
T ss_pred             eecccCCCCcccCCCccccCHhHh
Confidence            877766665666899999999974

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=7.8e-33  Score=218.20  Aligned_cols=168  Identities=20%  Similarity=0.294  Sum_probs=129.6

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ..++|++.+.||+|+||.||+|... +++.||+|+++...  ..+.+.+|+.+++.++||||+++.+++..       ..
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~-------~~  121 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFET-------PT  121 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEEC-------SS
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEec-------CC
Confidence            3467999999999999999999965 58899999997543  34567789999999999999999998865       66


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC---CCceeEcCCC
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---NLVAKISSYN  177 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~---~~~~~l~Dfg  177 (205)
                      ..+++|||+++++|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||+++.   ++.++|+|||
T Consensus       122 ~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg  196 (349)
T 2w4o_A          122 EISLVLELVTGGELFDRIVEKG--YYSERDAADAVKQILEAVAYLHE---NGIVHRDLKPENLLYATPAPDAPLKIADFG  196 (349)
T ss_dssp             EEEEEECCCCSCBHHHHHTTCS--SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESSSSTTCCEEECCCC
T ss_pred             eEEEEEEeCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCcccEEEecCCCCCCEEEccCc
Confidence            8999999999999999987654  68999999999999999999999   79999999999999975   8899999999


Q ss_pred             chhhcccccccccccccccccCCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +++............||..|+|||..
T Consensus       197 ~a~~~~~~~~~~~~~gt~~y~aPE~~  222 (349)
T 2w4o_A          197 LSKIVEHQVLMKTVCGTPGYCAPEIL  222 (349)
T ss_dssp             ----------------CGGGSCHHHH
T ss_pred             cccccCcccccccccCCCCccCHHHh
Confidence            99877765555557899999999964

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=1.1e-32  Score=226.20  Aligned_cols=170  Identities=19%  Similarity=0.294  Sum_probs=147.6

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc--CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK--KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ..++|++.+.||+|+||.||+|... +++.||+|++...  .......+.+|+.+++.++||||+++++++.+       
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-------   92 (486)
T 3mwu_A           20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILED-------   92 (486)
T ss_dssp             HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-------
T ss_pred             hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEc-------
Confidence            3578999999999999999999964 6899999999654  34557788999999999999999999998866       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC---CCCceeEcC
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD---QNLVAKISS  175 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~---~~~~~~l~D  175 (205)
                      ....++|+|++.+++|.+.+....  .+++..++.++.|++.||.|||+   .+|+||||||+||+++   .++.++|+|
T Consensus        93 ~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~D  167 (486)
T 3mwu_A           93 SSSFYIVGELYTGGELFDEIIKRK--RFSEHDAARIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKIID  167 (486)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEESSSSTTCCEEECS
T ss_pred             CCEEEEEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCchHHEEEecCCCCCCEEEEE
Confidence            678999999999999999887654  68999999999999999999999   7999999999999995   456799999


Q ss_pred             CCchhhcccccccccccccccccCCCCC
Q 028725          176 YNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ||+++............||+.|+|||..
T Consensus       168 fg~a~~~~~~~~~~~~~gt~~y~aPE~~  195 (486)
T 3mwu_A          168 FGLSTCFQQNTKMKDRIGTAYYIAPEVL  195 (486)
T ss_dssp             CSCTTTBCCC----CCTTGGGGCCGGGG
T ss_pred             CCcCeECCCCCccCCCcCCCCCCCHHHh
Confidence            9999888776666667899999999974

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=1e-32  Score=215.25  Aligned_cols=171  Identities=17%  Similarity=0.326  Sum_probs=143.9

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ..++|++.+.||+|+||.||+|... ++.||+|++.... .......+|+.+++.++||||+++++++....   .....
T Consensus        22 ~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~---~~~~~   96 (322)
T 3soc_A           22 QSMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGT---SVDVD   96 (322)
T ss_dssp             TTEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC---SSSEE
T ss_pred             chhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCC---CCCce
Confidence            4578999999999999999999875 8899999996442 23344566888899999999999999887521   11345


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC----------ceeecCCccccEEeCCCCce
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP----------GVFSNNLKITDILLDQNLVA  171 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~----------~i~h~dlkp~nilv~~~~~~  171 (205)
                      .++||||+++++|.+++...   .+++..++.++.|++.||.|||+   .          +++||||||+||+++.++.+
T Consensus        97 ~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~al~~LH~---~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~  170 (322)
T 3soc_A           97 LWLITAFHEKGSLSDFLKAN---VVSWNELCHIAETMARGLAYLHE---DIPGLKDGHKPAISHRDIKSKNVLLKNNLTA  170 (322)
T ss_dssp             EEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHTC---CEEEETTEEECEEECSCCSGGGEEECTTCCE
T ss_pred             EEEEEecCCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHh---hccccccccCCCEEeCCCChHhEEECCCCeE
Confidence            79999999999999999764   58999999999999999999999   7          99999999999999999999


Q ss_pred             eEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      +|+|||+++.......   .....+|..|+|||..
T Consensus       171 kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~  205 (322)
T 3soc_A          171 CIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVL  205 (322)
T ss_dssp             EECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHH
T ss_pred             EEccCCcccccccccCccccccCccCccccCHhhc
Confidence            9999999976654432   2335789999999964

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=2.6e-33  Score=221.22  Aligned_cols=184  Identities=20%  Similarity=0.337  Sum_probs=152.3

Q ss_pred             cccccCHHHHHHHhcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCc
Q 028725           10 AYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCH   81 (205)
Q Consensus        10 ~~~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~   81 (205)
                      ....+...+|....++|++.+.||+|+||.||+|.+.      +++.||+|+++... ....+.+.+|+.++..+ +|||
T Consensus         8 ~~~~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpn   87 (359)
T 3vhe_A            8 ERLPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN   87 (359)
T ss_dssp             GGSCCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTT
T ss_pred             hhCCCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcc
Confidence            3456677888888899999999999999999999842      36789999997543 23346788999999999 7899


Q ss_pred             ccccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCC--------------------------------------
Q 028725           82 LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAW--------------------------------------  123 (205)
Q Consensus        82 i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~--------------------------------------  123 (205)
                      |+++++.+.+      .+...+++|||+++++|.+++.....                                      
T Consensus        88 iv~~~~~~~~------~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (359)
T 3vhe_A           88 VVNLLGACTK------PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQS  161 (359)
T ss_dssp             BCCEEEEECS------TTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC--------------------------------
T ss_pred             eeeeeeeeec------CCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccc
Confidence            9999998865      23458999999999999999975431                                      


Q ss_pred             --------------------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725          124 --------------------------QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus       124 --------------------------~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                                                ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kl~Dfg  238 (359)
T 3vhe_A          162 SASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFG  238 (359)
T ss_dssp             ----------------------CTTTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCG
T ss_pred             ccccccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEEcCCCcEEEEecc
Confidence                                      128899999999999999999999   799999999999999999999999999


Q ss_pred             chhhccccc---ccccccccccccCCCC
Q 028725          178 LPLLAENAE---KVGHVTPYSGSINPTN  202 (205)
Q Consensus       178 ~a~~~~~~~---~~~~~~~~~~~~aPE~  202 (205)
                      ++.......   ......+|..|+|||.
T Consensus       239 ~a~~~~~~~~~~~~~~~~~t~~y~aPE~  266 (359)
T 3vhe_A          239 LARDIYKDPDYVRKGDARLPLKWMAPET  266 (359)
T ss_dssp             GGSCTTSCTTCEEC--CEECGGGCCHHH
T ss_pred             ceeeecccccchhccccCCCceeEChhh
Confidence            998664432   2334578889999995

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=7.8e-33  Score=221.63  Aligned_cols=173  Identities=21%  Similarity=0.330  Sum_probs=149.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|.+.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+.+++.++||||+++++++..     ....
T Consensus         8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-----~~~~   82 (396)
T 4eut_A            8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEE-----TTTR   82 (396)
T ss_dssp             SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----TTTC
T ss_pred             CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeecc-----CCCC
Confidence            467999999999999999999965 58999999997543 3456778899999999999999999998765     2244


Q ss_pred             eEEEEEeecCCCcHHHhhccCCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEe----CCCCceeEcC
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAW-QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL----DQNLVAKISS  175 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv----~~~~~~~l~D  175 (205)
                      ..++||||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+|+||||||+||++    +.++.++|+|
T Consensus        83 ~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kL~D  159 (396)
T 4eut_A           83 HKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTD  159 (396)
T ss_dssp             CEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEECTTSCEEEEECC
T ss_pred             eeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHH---CCEEECCcCHHHEEEeecCCCceeEEEec
Confidence            78999999999999999975432 238999999999999999999999   799999999999999    7778899999


Q ss_pred             CCchhhcccccccccccccccccCCCCC
Q 028725          176 YNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ||+++............+|..|+|||..
T Consensus       160 FG~a~~~~~~~~~~~~~gt~~y~aPE~~  187 (396)
T 4eut_A          160 FGAARELEDDEQFVSLYGTEEYLHPDMY  187 (396)
T ss_dssp             GGGCEECCCGGGSSCSSSCCTTCCHHHH
T ss_pred             CCCceEccCCCccccccCCccccCHHHh
Confidence            9999888776666667899999999963

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=2.3e-33  Score=227.83  Aligned_cols=171  Identities=17%  Similarity=0.274  Sum_probs=137.0

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ..++|++.+.||+|+||.||+|.. .+++.||+|+++..   .......+.+|+.+++.++||||+++.+.+..      
T Consensus       146 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~------  219 (446)
T 4ejn_A          146 TMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQT------  219 (446)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEE------
T ss_pred             ChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEee------
Confidence            347899999999999999999995 46899999999754   23445667789999999999999999999876      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       .+..++||||+++++|.+++....  .+++..+..++.|++.||.|||+.  .+|+||||||+||+++.++.++|+|||
T Consensus       220 -~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~--~giiHrDlkp~NIll~~~~~~kl~DFG  294 (446)
T 4ejn_A          220 -HDRLCFVMEYANGGELFFHLSRER--VFSEDRARFYGAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFG  294 (446)
T ss_dssp             -TTEEEEEECCCSSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHH--TCCCCCCCCGGGEEECSSSCEEECCCC
T ss_pred             -CCEEEEEEeeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHhhc--CCEEECCCCHHHEEECCCCCEEEccCC
Confidence             678999999999999999987654  689999999999999999999962  499999999999999999999999999


Q ss_pred             chhhccc-ccccccccccccccCCCCC
Q 028725          178 LPLLAEN-AEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~-~~~~~~~~~~~~~~aPE~~  203 (205)
                      +++.... ........||.+|+|||..
T Consensus       295 ~a~~~~~~~~~~~~~~gt~~y~aPE~~  321 (446)
T 4ejn_A          295 LCKEGIKDGATMKTFCGTPEYLAPEVL  321 (446)
T ss_dssp             CCCTTCC-----CCSSSCGGGCCHHHH
T ss_pred             CceeccCCCcccccccCCccccCHhhc
Confidence            9976443 3344556899999999963

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=4.3e-32  Score=209.99  Aligned_cols=183  Identities=32%  Similarity=0.529  Sum_probs=156.0

Q ss_pred             cccccCHHHHHHHhcCCCcc------eeeccCcceEEEEEEecCCcEEEEEEecccC----CcCHHHHHHHHHHHhccCC
Q 028725           10 AYRTFSLEELEEATNNFDTS------AFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK----SHSTRNFMHHIELISKLRH   79 (205)
Q Consensus        10 ~~~~~~~~~~~~~~~~y~~~------~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~~   79 (205)
                      ....|+..++...+++|...      +.||+|+||.||+|.. ++..+|+|++....    ....+.+.+|+.+++.++|
T Consensus        11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h   89 (307)
T 2nru_A           11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH   89 (307)
T ss_dssp             CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCC
T ss_pred             CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCC
Confidence            45789999999999998777      9999999999999987 48899999986542    2335678899999999999


Q ss_pred             CcccccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccC-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCC
Q 028725           80 CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH-AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNL  158 (205)
Q Consensus        80 ~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dl  158 (205)
                      |||+++.+++.+       ....+++||++++++|.+++... ....+++..++.++.|++.||.|||+   .+++|+||
T Consensus        90 ~~i~~~~~~~~~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dl  159 (307)
T 2nru_A           90 ENLVELLGFSSD-------GDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE---NHHIHRDI  159 (307)
T ss_dssp             TTBCCEEEEECS-------SSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCC
T ss_pred             CCeEEEEEEEec-------CCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhc---CCeecCCC
Confidence            999999998865       56789999999999999998743 22468999999999999999999999   79999999


Q ss_pred             ccccEEeCCCCceeEcCCCchhhccccc---ccccccccccccCCCCC
Q 028725          159 KITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       159 kp~nilv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      ||+||+++.++.++|+|||++.......   ......+|..|+|||..
T Consensus       160 kp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~  207 (307)
T 2nru_A          160 KSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEAL  207 (307)
T ss_dssp             CGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHH
T ss_pred             CHHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHh
Confidence            9999999999999999999997665432   22335789999999963

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=9.8e-33  Score=220.44  Aligned_cols=173  Identities=12%  Similarity=0.207  Sum_probs=148.0

Q ss_pred             HHhcCCCcceeeccC--cceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           21 EATNNFDTSAFMGEG--SKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g--~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      ...++|++.+.||+|  +||.||+|... +++.||+|+++...  ......+.+|+.+++.++||||+++++++.+    
T Consensus        22 ~~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~----   97 (389)
T 3gni_B           22 PEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIA----   97 (389)
T ss_dssp             CCGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE----
T ss_pred             CCCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEE----
Confidence            346889999999999  99999999965 69999999997653  2334667889999999999999999999876    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                         .+..++||||+++++|.+++.......+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|
T Consensus        98 ---~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~NIll~~~~~~kl~d  171 (389)
T 3gni_B           98 ---DNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHH---MGYVHRSVKASHILISVDGKVYLSG  171 (389)
T ss_dssp             ---TTEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECC
T ss_pred             ---CCEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEcc
Confidence               6789999999999999999987644579999999999999999999999   7999999999999999999999999


Q ss_pred             CCchhhccccc--------ccccccccccccCCCCC
Q 028725          176 YNLPLLAENAE--------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~--------~~~~~~~~~~~~aPE~~  203 (205)
                      ||.+.......        ......+|..|+|||..
T Consensus       172 fg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  207 (389)
T 3gni_B          172 LRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVL  207 (389)
T ss_dssp             GGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHH
T ss_pred             cccceeeccccccccccccccccccccccccCHHHH
Confidence            99885443221        22224788999999964

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=2.7e-32  Score=212.44  Aligned_cols=171  Identities=16%  Similarity=0.312  Sum_probs=131.0

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ..++|++.+.||+|+||.||+|.. .+++.||+|+++... ......+.+|+.+++.++||||+++++++..       .
T Consensus         3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------~   75 (317)
T 2pmi_A            3 SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHT-------E   75 (317)
T ss_dssp             ----------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECC-------T
T ss_pred             cccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEE-------C
Confidence            457899999999999999999995 468999999997653 3345678899999999999999999998865       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccC----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725          100 SRIFLIFEYVPNGTLRSWISGH----AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                      +..++||||+++ +|.+++...    ....+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|
T Consensus        76 ~~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~D  151 (317)
T 2pmi_A           76 NKLTLVFEFMDN-DLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHE---NKILHRDLKPQNLLINKRGQLKLGD  151 (317)
T ss_dssp             TEEEEEEECCCC-BHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECC
T ss_pred             CeEEEEEEecCC-CHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCChHHeEEcCCCCEEECc
Confidence            789999999974 999988632    12358899999999999999999999   7999999999999999999999999


Q ss_pred             CCchhhccccc-ccccccccccccCCCCC
Q 028725          176 YNLPLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ||++....... ......+|..|+|||..
T Consensus       152 fg~~~~~~~~~~~~~~~~~t~~y~aPE~~  180 (317)
T 2pmi_A          152 FGLARAFGIPVNTFSSEVVTLWYRAPDVL  180 (317)
T ss_dssp             CSSCEETTSCCCCCCCCCSCCTTCCHHHH
T ss_pred             CccceecCCCcccCCCCcccccccCchHh
Confidence            99998665432 33345889999999953

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=2.8e-32  Score=211.30  Aligned_cols=176  Identities=20%  Similarity=0.330  Sum_probs=144.9

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC-----CcCHHHHHHHHHHHhccC---CCcccccccceeee
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK-----SHSTRNFMHHIELISKLR---HCHLVSALGHCFEC   92 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~---~~~i~~~~~~~~~~   92 (205)
                      ..++|++.+.||+|+||.||+|.. .+++.||+|++....     ......+.+|+.+++.++   ||||+++++++...
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            357999999999999999999995 568999999996432     222346677887777765   99999999988652


Q ss_pred             cccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCcee
Q 028725           93 YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAK  172 (205)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~  172 (205)
                      ..  ......++++|++. ++|.+++.......+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++
T Consensus        87 ~~--~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~Nil~~~~~~~k  160 (308)
T 3g33_A           87 RT--DREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHA---NCIVHRDLKPENILVTSGGTVK  160 (308)
T ss_dssp             CS--SSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCTTTEEECTTSCEE
T ss_pred             CC--CCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCCEE
Confidence            11  11225789999996 599999987765569999999999999999999999   7999999999999999999999


Q ss_pred             EcCCCchhhcccccccccccccccccCCCCC
Q 028725          173 ISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       173 l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |+|||+++............+|..|+|||..
T Consensus       161 l~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~  191 (308)
T 3g33_A          161 LADFGLARIYSYQMALTPVVVTLWYRAPEVL  191 (308)
T ss_dssp             ECSCSCTTTSTTCCCSGGGGCCCSSCCHHHH
T ss_pred             EeeCccccccCCCcccCCccccccccCchHH
Confidence            9999999887766666667899999999963

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=1.3e-32  Score=225.51  Aligned_cols=169  Identities=17%  Similarity=0.289  Sum_probs=150.3

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ..++|++.+.||+|+||.||+|... +++.||+|++....   ......+.+|+.+++.++||||+++++++.+      
T Consensus        24 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~------   97 (484)
T 3nyv_A           24 FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFED------   97 (484)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEEC------
T ss_pred             ccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEe------
Confidence            3467999999999999999999965 68999999996543   4456788999999999999999999998866      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEe---CCCCceeEc
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL---DQNLVAKIS  174 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv---~~~~~~~l~  174 (205)
                       ....++|+|++.+++|.+.+....  .+++..++.++.|++.||.|||+   .+|+||||||+||++   +.++.++|+
T Consensus        98 -~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~  171 (484)
T 3nyv_A           98 -KGYFYLVGEVYTGGELFDEIISRK--RFSEVDAARIIRQVLSGITYMHK---NKIVHRDLKPENLLLESKSKDANIRII  171 (484)
T ss_dssp             -SSEEEEEECCCCSCBHHHHHHTCS--CCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSTTCCEEEC
T ss_pred             -CCEEEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEEecCCCCCcEEEE
Confidence             678999999999999999987664  68999999999999999999999   799999999999999   467899999


Q ss_pred             CCCchhhcccccccccccccccccCCCC
Q 028725          175 SYNLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       175 Dfg~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      |||+++............||+.|+|||.
T Consensus       172 Dfg~a~~~~~~~~~~~~~gt~~y~aPE~  199 (484)
T 3nyv_A          172 DFGLSTHFEASKKMKDKIGTAYYIAPEV  199 (484)
T ss_dssp             CTTHHHHBCCCCSHHHHTTGGGTCCHHH
T ss_pred             eeeeeEEcccccccccCCCCccccCcee
Confidence            9999998877666666789999999996

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=2e-33  Score=220.35  Aligned_cols=172  Identities=14%  Similarity=0.161  Sum_probs=136.6

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccC--------CcCHHHHHHHHHHHhccC---------CCcccc
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--------SHSTRNFMHHIELISKLR---------HCHLVS   84 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~--------~~~~~~~~~e~~~l~~l~---------~~~i~~   84 (205)
                      ..++|++.+.||+|+||.||+|.. +|+.||+|++....        ....+.+.+|+.+++.++         ||||++
T Consensus        18 ~~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~   96 (336)
T 2vuw_A           18 PTEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG   96 (336)
T ss_dssp             CHHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred             ccccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence            357899999999999999999998 68999999997653        223477889999988886         555555


Q ss_pred             cccc-----------------eeeecc------cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHH
Q 028725           85 ALGH-----------------CFECYF------DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARG  141 (205)
Q Consensus        85 ~~~~-----------------~~~~~~------~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~  141 (205)
                      +.++                 +.+...      ........++||||+++|++.+.+..   ..+++..+..++.|++.|
T Consensus        97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~~~~~~~~i~~qi~~a  173 (336)
T 2vuw_A           97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLSSLATAKSILHQLTAS  173 (336)
T ss_dssp             EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCCCHHHHHHHHHHHHHH
T ss_pred             hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCCCHHHHHHHHHHHHHH
Confidence            5443                 322000      00125689999999999976666644   368899999999999999


Q ss_pred             HHHhh-cCCCCceeecCCccccEEeCCCC--------------------ceeEcCCCchhhcccccccccccccccccCC
Q 028725          142 IQFLH-TGIVPGVFSNNLKITDILLDQNL--------------------VAKISSYNLPLLAENAEKVGHVTPYSGSINP  200 (205)
Q Consensus       142 l~~lh-~~~~~~i~h~dlkp~nilv~~~~--------------------~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aP  200 (205)
                      |.||| +   .+|+||||||+||+++.++                    .+||+|||+|+.....    ...||..|+||
T Consensus       174 L~~lH~~---~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~----~~~gt~~y~aP  246 (336)
T 2vuw_A          174 LAVAEAS---LRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG----IVVFCDVSMDE  246 (336)
T ss_dssp             HHHHHHH---HCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT----EEECCCCTTCS
T ss_pred             HHHHHHh---CCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC----cEEEeecccCh
Confidence            99999 8   7999999999999999887                    8999999999876643    34899999999


Q ss_pred             CCCC
Q 028725          201 TNSA  204 (205)
Q Consensus       201 E~~~  204 (205)
                      |...
T Consensus       247 E~~~  250 (336)
T 2vuw_A          247 DLFT  250 (336)
T ss_dssp             GGGC
T ss_pred             hhhc
Confidence            9753

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=7.1e-33  Score=220.25  Aligned_cols=170  Identities=24%  Similarity=0.430  Sum_probs=133.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEec----CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~----~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .++|++.+.||+|+||.||+|...    ++..||+|+++... ....+.+.+|+.++++++||||+++.+++..      
T Consensus        44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~------  117 (373)
T 2qol_A           44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTK------  117 (373)
T ss_dssp             GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS------
T ss_pred             HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEee------
Confidence            357999999999999999999864    46789999997543 2345678899999999999999999998865      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ....++||||+++++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||
T Consensus       118 -~~~~~lv~e~~~~~sL~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg  192 (373)
T 2qol_A          118 -SKPVMIVTEYMENGSLDSFLRKHD-AQFTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFG  192 (373)
T ss_dssp             -SSSCEEEEECCTTCBHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC-
T ss_pred             -CCceEEEEeCCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCcceEEEcCCCCEEECcCc
Confidence             567899999999999999997653 468999999999999999999999   799999999999999999999999999


Q ss_pred             chhhccccccc----ccccccccccCCCCC
Q 028725          178 LPLLAENAEKV----GHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~----~~~~~~~~~~aPE~~  203 (205)
                      +++........    ....++..|+|||..
T Consensus       193 ~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~  222 (373)
T 2qol_A          193 LGRVLEDDPEAAYTTRGGKIPIRWTSPEAI  222 (373)
T ss_dssp             ---------------------CTTSCHHHH
T ss_pred             cccccccCCccceeccCCCcCCCccChhhh
Confidence            99876654321    122456789999963

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=1.5e-32  Score=210.71  Aligned_cols=171  Identities=16%  Similarity=0.215  Sum_probs=142.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|.+.+.||+|+||.||+|.. .++..+|+|++.... ....+.+.+|+.+++.++||||+++++++.+       ..
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------~~   93 (285)
T 3is5_A           21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFED-------YH   93 (285)
T ss_dssp             HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-------SS
T ss_pred             hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheec-------CC
Confidence            47799999999999999999995 468899999997654 4456788999999999999999999998865       66


Q ss_pred             eEEEEEeecCCCcHHHhhccC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC---CCCceeEcC
Q 028725          101 RIFLIFEYVPNGTLRSWISGH--AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD---QNLVAKISS  175 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~---~~~~~~l~D  175 (205)
                      ..++|||++++++|.+.+...  ....+++..++.++.|++.||.|||+   .+++||||||+||+++   .++.++|+|
T Consensus        94 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~dikp~NIl~~~~~~~~~~kl~D  170 (285)
T 3is5_A           94 NMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHS---QHVVHKDLKPENILFQDTSPHSPIKIID  170 (285)
T ss_dssp             EEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEESSSSTTCCEEECC
T ss_pred             eEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHh---CCEEECCCCHHHEEEecCCCCCCEEEEe
Confidence            899999999999999988532  22468999999999999999999999   7999999999999994   567899999


Q ss_pred             CCchhhcccccccccccccccccCCCCC
Q 028725          176 YNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ||++.............+|..|+|||..
T Consensus       171 fg~a~~~~~~~~~~~~~~t~~y~aPE~~  198 (285)
T 3is5_A          171 FGLAELFKSDEHSTNAAGTALYMAPEVF  198 (285)
T ss_dssp             CCCCCC----------CTTGGGCCHHHH
T ss_pred             eecceecCCcccCcCcccccCcCChHHh
Confidence            9999877766666667899999999964

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=1.6e-32  Score=225.62  Aligned_cols=169  Identities=18%  Similarity=0.280  Sum_probs=144.5

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|++.+.||+|+||.||+|... ++..+|+|++....  ......+.+|+.+++.++||||+++++++.+       .
T Consensus        36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-------~  108 (494)
T 3lij_A           36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFED-------K  108 (494)
T ss_dssp             HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEEC-------S
T ss_pred             hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-------C
Confidence            457999999999999999999964 68899999997653  3446778899999999999999999999876       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC---CceeEcCC
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN---LVAKISSY  176 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~---~~~~l~Df  176 (205)
                      ...++||||+++++|.+.+....  .+++..++.++.|++.||.|||+   .+|+||||||+||+++..   +.++|+||
T Consensus       109 ~~~~lv~e~~~~g~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~Df  183 (494)
T 3lij_A          109 RNYYLVMECYKGGELFDEIIHRM--KFNEVDAAVIIKQVLSGVTYLHK---HNIVHRDLKPENLLLESKEKDALIKIVDF  183 (494)
T ss_dssp             SEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSTTCCEEECCC
T ss_pred             CEEEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCceeccCChhhEEEeCCCCCCcEEEEEC
Confidence            78999999999999999887653  68899999999999999999999   799999999999999754   55999999


Q ss_pred             CchhhcccccccccccccccccCCCCC
Q 028725          177 NLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |++.............||+.|+|||..
T Consensus       184 G~a~~~~~~~~~~~~~gt~~y~aPE~l  210 (494)
T 3lij_A          184 GLSAVFENQKKMKERLGTAYYIAPEVL  210 (494)
T ss_dssp             TTCEECBTTBCBCCCCSCTTTCCHHHH
T ss_pred             CCCeECCCCccccccCCCcCeeCHHHH
Confidence            999888776666667899999999964

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=3.8e-32  Score=214.94  Aligned_cols=183  Identities=18%  Similarity=0.242  Sum_probs=144.0

Q ss_pred             cCHHHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCc-----------CHHHHHHHHHHHhccCCCcc
Q 028725           14 FSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH-----------STRNFMHHIELISKLRHCHL   82 (205)
Q Consensus        14 ~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~-----------~~~~~~~e~~~l~~l~~~~i   82 (205)
                      ..+.++....++|++.+.||+|+||.||+|...++..||+|++......           ..+.+.+|+.+++.++||||
T Consensus        12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i   91 (362)
T 3pg1_A           12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNI   91 (362)
T ss_dssp             HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTB
T ss_pred             HHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCc
Confidence            3456778888999999999999999999999877999999999654221           12678899999999999999


Q ss_pred             cccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCcccc
Q 028725           83 VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITD  162 (205)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~n  162 (205)
                      +++.+++....  .......++|||++. ++|.+.+.... ..+++..++.++.|++.||.|||+   .+++|+||||+|
T Consensus        92 v~~~~~~~~~~--~~~~~~~~lv~e~~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~N  164 (362)
T 3pg1_A           92 LGLRDIFVHFE--EPAMHKLYLVTELMR-TDLAQVIHDQR-IVISPQHIQYFMYHILLGLHVLHE---AGVVHRDLHPGN  164 (362)
T ss_dssp             CCCSEEEEECC--TTTCCEEEEEEECCS-EEHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGG
T ss_pred             cceeeeEEecc--CCCcceEEEEEccCC-CCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHH---CcCEecCCChHH
Confidence            99999886522  123457899999997 58888887543 468999999999999999999999   799999999999


Q ss_pred             EEeCCCCceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          163 ILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       163 ilv~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |+++.++.++|+|||++.............+|..|+|||..
T Consensus       165 Il~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~  205 (362)
T 3pg1_A          165 ILLADNNDITICDFNLAREDTADANKTHYVTHRWYRAPELV  205 (362)
T ss_dssp             EEECTTCCEEECCTTC---------------CGGGCCHHHH
T ss_pred             EEEcCCCCEEEEecCcccccccccccceecccceecCcHHh
Confidence            99999999999999999877766666667899999999953

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=5.2e-33  Score=218.20  Aligned_cols=173  Identities=24%  Similarity=0.391  Sum_probs=145.3

Q ss_pred             HHHhcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeee
Q 028725           20 EEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFEC   92 (205)
Q Consensus        20 ~~~~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   92 (205)
                      ....++|++.+.||+|+||.||+|...      +++.||+|+++.... .....+.+|+.+++.++||||+++++++.. 
T Consensus        43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-  121 (343)
T 1luf_A           43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV-  121 (343)
T ss_dssp             BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-
T ss_pred             EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc-
Confidence            345688999999999999999999964      347899999975532 335678899999999999999999998865 


Q ss_pred             cccCCCCCeEEEEEeecCCCcHHHhhccCC----------------------CCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q 028725           93 YFDDSSVSRIFLIFEYVPNGTLRSWISGHA----------------------WQSLTWTQRISAAIGVARGIQFLHTGIV  150 (205)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~----------------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~  150 (205)
                            ....+++|||+++++|.+++....                      ...+++..++.++.|++.||.|||+   
T Consensus       122 ------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~---  192 (343)
T 1luf_A          122 ------GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE---  192 (343)
T ss_dssp             ------SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHH---
T ss_pred             ------CCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHh---
Confidence                  567899999999999999987532                      1468899999999999999999999   


Q ss_pred             CceeecCCccccEEeCCCCceeEcCCCchhhccccc---ccccccccccccCCCC
Q 028725          151 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  202 (205)
Q Consensus       151 ~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~  202 (205)
                      .+++||||||+||+++.++.++|+|||++.......   ......+|..|+|||.
T Consensus       193 ~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~  247 (343)
T 1luf_A          193 RKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPES  247 (343)
T ss_dssp             TTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHH
T ss_pred             CCeecCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhh
Confidence            799999999999999999999999999998665432   2233477889999995

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=2e-32  Score=222.59  Aligned_cols=170  Identities=19%  Similarity=0.387  Sum_probs=144.0

Q ss_pred             HHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           20 EEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        20 ~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ....++|++.+.||+|+||.||+|.+. ++.||+|+++...  ..+.+.+|+.++++++||||+++++++..      ..
T Consensus       189 ~i~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~------~~  259 (450)
T 1k9a_A          189 ALNMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVE------EK  259 (450)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEEC------TT
T ss_pred             ccChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEc------CC
Confidence            344578999999999999999999985 7899999997543  56778999999999999999999998865      13


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++||||+++++|.+++.......+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++
T Consensus       260 ~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a  336 (450)
T 1k9a_A          260 GGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLT  336 (450)
T ss_dssp             SCEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred             CceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHhhEEECCCCCEEEeeCCCc
Confidence            468999999999999999986554457899999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +.......  ...++..|+|||..
T Consensus       337 ~~~~~~~~--~~~~~~~y~aPE~~  358 (450)
T 1k9a_A          337 KEASSTQD--TGKLPVKWTAPEAL  358 (450)
T ss_dssp             EECC--------CCCTTTSCHHHH
T ss_pred             cccccccc--CCCCCcceeCHHHh
Confidence            85543322  23678899999963

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=3.2e-32  Score=207.99  Aligned_cols=172  Identities=18%  Similarity=0.381  Sum_probs=135.1

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      ...++|++.+.||+|+||.||+|.. .+++.||+|++....   ......+.+|+.+++.++||||+++++.+.+     
T Consensus         8 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----   82 (278)
T 3cok_A            8 EKIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFED-----   82 (278)
T ss_dssp             SSGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEEC-----
T ss_pred             cccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEcc-----
Confidence            3457899999999999999999995 468999999996542   3445778899999999999999999998865     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                        ....++++|++++++|.+++.... ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+||
T Consensus        83 --~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nili~~~~~~kl~df  156 (278)
T 3cok_A           83 --SNYVYLVLEMCHNGEMNRYLKNRV-KPFSENEARHFMHQIITGMLYLHS---HGILHRDLTLSNLLLTRNMNIKIADF  156 (278)
T ss_dssp             --SSEEEEEEECCTTEEHHHHHHTCS-SCCCHHHHHHHHHHHHHHHHHHHH---TTEECSSCCGGGEEECTTCCEEECCC
T ss_pred             --CCeEEEEEecCCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEEEee
Confidence              678999999999999999998653 468999999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhccccc-ccccccccccccCCCCC
Q 028725          177 NLPLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      |++....... ......+|..|+|||..
T Consensus       157 g~~~~~~~~~~~~~~~~~~~~y~aPE~~  184 (278)
T 3cok_A          157 GLATQLKMPHEKHYTLCGTPNYISPEIA  184 (278)
T ss_dssp             TTCEECC---------------------
T ss_pred             cceeeccCCCCcceeccCCCCcCCcchh
Confidence            9998665432 33345789999999975

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=4.8e-32  Score=214.89  Aligned_cols=171  Identities=19%  Similarity=0.376  Sum_probs=149.3

Q ss_pred             HHHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCc--------CHHHHHHHHHHHhcc-CCCcccccccce
Q 028725           20 EEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH--------STRNFMHHIELISKL-RHCHLVSALGHC   89 (205)
Q Consensus        20 ~~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~--------~~~~~~~e~~~l~~l-~~~~i~~~~~~~   89 (205)
                      ....++|++.+.||+|+||.||+|... +|+.||+|++......        ..+.+.+|+.+++.+ +||||+++.+.+
T Consensus        90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  169 (365)
T 2y7j_A           90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY  169 (365)
T ss_dssp             HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence            344578999999999999999999965 6999999999754321        134577899999999 799999999988


Q ss_pred             eeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC
Q 028725           90 FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL  169 (205)
Q Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~  169 (205)
                      ..       ....++||||+++++|.+++....  .+++..+..++.|++.||.|||+   .|++|+||||+||+++.++
T Consensus       170 ~~-------~~~~~lv~e~~~g~~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~~LH~---~gi~H~Dlkp~NIl~~~~~  237 (365)
T 2y7j_A          170 ES-------SSFMFLVFDLMRKGELFDYLTEKV--ALSEKETRSIMRSLLEAVSFLHA---NNIVHRDLKPENILLDDNM  237 (365)
T ss_dssp             EB-------SSEEEEEECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTC
T ss_pred             ee-------CCEEEEEEEeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCC
Confidence            65       678999999999999999987543  68999999999999999999999   7999999999999999999


Q ss_pred             ceeEcCCCchhhcccccccccccccccccCCCC
Q 028725          170 VAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       170 ~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      .++|+|||++.............||..|+|||.
T Consensus       238 ~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~  270 (365)
T 2y7j_A          238 QIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEI  270 (365)
T ss_dssp             CEEECCCTTCEECCTTCCBCCCCSCGGGCCHHH
T ss_pred             CEEEEecCcccccCCCcccccCCCCCCccChhh
Confidence            999999999988777666666799999999995

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=3e-32  Score=224.45  Aligned_cols=170  Identities=18%  Similarity=0.242  Sum_probs=146.6

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC-------------cCHHHHHHHHHHHhccCCCccccccc
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-------------HSTRNFMHHIELISKLRHCHLVSALG   87 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~-------------~~~~~~~~e~~~l~~l~~~~i~~~~~   87 (205)
                      ..++|++.+.||+|+||.||+|... ++..+|+|++.....             ...+.+.+|+.+++.++||||+++++
T Consensus        34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~  113 (504)
T 3q5i_A           34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD  113 (504)
T ss_dssp             GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            4578999999999999999999964 588999999975421             33567889999999999999999999


Q ss_pred             ceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC
Q 028725           88 HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ  167 (205)
Q Consensus        88 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~  167 (205)
                      ++.+       ....++||||+++++|.+.+....  .+++..++.++.|++.||.|||+   .+|+||||||+||+++.
T Consensus       114 ~~~~-------~~~~~lv~e~~~gg~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~  181 (504)
T 3q5i_A          114 VFED-------KKYFYLVTEFYEGGELFEQIINRH--KFDECDAANIMKQILSGICYLHK---HNIVHRDIKPENILLEN  181 (504)
T ss_dssp             EEEC-------SSEEEEEEECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESS
T ss_pred             EEEc-------CCEEEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCcHHHEEEec
Confidence            9876       678999999999999999887653  68999999999999999999999   79999999999999997


Q ss_pred             CC---ceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          168 NL---VAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       168 ~~---~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ++   .++|+|||++.............||+.|+|||..
T Consensus       182 ~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~  220 (504)
T 3q5i_A          182 KNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVL  220 (504)
T ss_dssp             TTCCSSEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHH
T ss_pred             CCCCccEEEEECCCCEEcCCCCccccccCCcCCCCHHHh
Confidence            65   6999999999888776666667899999999964

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=7.5e-33  Score=225.50  Aligned_cols=172  Identities=16%  Similarity=0.297  Sum_probs=133.0

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|++.+.||+|+||.||+|... +++.||+|++....  ....+.+.+|+.+++.++||||+++++++.....  ...
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--~~~  129 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDV--EKF  129 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCT--TTC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCc--ccC
Confidence            468999999999999999999954 68999999996542  2345678899999999999999999998864221  223


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ..+++|||++ +++|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||++
T Consensus       130 ~~~~lv~e~~-~~~L~~~~~~~~--~l~~~~~~~~~~qi~~aL~~LH~---~~iiHrDlKp~NILl~~~~~~kl~DFGla  203 (458)
T 3rp9_A          130 DELYVVLEIA-DSDFKKLFRTPV--YLTELHIKTLLYNLLVGVKYVHS---AGILHRDLKPANCLVNQDCSVKVCDFGLA  203 (458)
T ss_dssp             CCEEEEECCC-SEEHHHHHHSSC--CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             ceEEEEEecc-ccchhhhcccCC--CCCHHHHHHHHHHHHHHHHHHHh---CCcCCCCCChhhEEECCCCCEeecccccc
Confidence            5789999988 569999987653  68999999999999999999999   79999999999999999999999999999


Q ss_pred             hhccccc----------------------------ccccccccccccCCCC
Q 028725          180 LLAENAE----------------------------KVGHVTPYSGSINPTN  202 (205)
Q Consensus       180 ~~~~~~~----------------------------~~~~~~~~~~~~aPE~  202 (205)
                      +......                            ......||++|+|||.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~  254 (458)
T 3rp9_A          204 RTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPEL  254 (458)
T ss_dssp             BCTTSCTTCCCCCC---------------------------CCCTTCCHHH
T ss_pred             hhccCccccccccccCccccccccccccccccccccccCCcccccccChHH
Confidence            8765322                            1233478999999995

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=1.1e-32  Score=223.06  Aligned_cols=172  Identities=16%  Similarity=0.247  Sum_probs=142.2

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|++.+.||+|+||.||+|... +++.||+|++....  ....+.+.+|+.+++.++||||+++++++.....  ...
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~--~~~  102 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDL--LKF  102 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCT--TTC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCC--CcC
Confidence            678999999999999999999954 58899999997542  2345678899999999999999999998865221  112


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++|||++. ++|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||++
T Consensus       103 ~~~~lv~e~~~-~~L~~~~~~~~--~l~~~~~~~i~~qil~aL~~LH~---~givHrDlkp~NILl~~~~~~kL~DFGla  176 (432)
T 3n9x_A          103 DELYIVLEIAD-SDLKKLFKTPI--FLTEEHIKTILYNLLLGENFIHE---SGIIHRDLKPANCLLNQDCSVKVCDFGLA  176 (432)
T ss_dssp             CCEEEEEECCS-EEHHHHHHSSC--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             CeEEEEEecCC-cCHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHeEECCCCCEEEccCCCc
Confidence            57899999985 59999997653  68999999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccc-----------------------cccccccccccCCCC
Q 028725          180 LLAENAEK-----------------------VGHVTPYSGSINPTN  202 (205)
Q Consensus       180 ~~~~~~~~-----------------------~~~~~~~~~~~aPE~  202 (205)
                      +.......                       .....+|.+|+|||.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~  222 (432)
T 3n9x_A          177 RTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPEL  222 (432)
T ss_dssp             EEC-------------------------------CCCCCTTCCHHH
T ss_pred             ccccccccccccccccccccccccccchhccccCCCCCccccCHHH
Confidence            87654321                       244689999999995

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=5.5e-33  Score=215.50  Aligned_cols=181  Identities=21%  Similarity=0.323  Sum_probs=147.9

Q ss_pred             cccCHHHHHHHhcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccc
Q 028725           12 RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVS   84 (205)
Q Consensus        12 ~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~   84 (205)
                      ..+...++....++|.+.+.||+|+||.||+|...      ++..||+|++.... ....+.+.+|+.+++.++||||++
T Consensus        11 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~   90 (314)
T 2ivs_A           11 KILEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIK   90 (314)
T ss_dssp             ---CCTTTBCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCC
T ss_pred             eccCCcccccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceee
Confidence            33333444455688999999999999999999852      35789999997543 334567889999999999999999


Q ss_pred             cccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCC----------------------CCCCHHHHHHHHHHHHHHH
Q 028725           85 ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAW----------------------QSLTWTQRISAAIGVARGI  142 (205)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~----------------------~~~~~~~~~~i~~~i~~~l  142 (205)
                      +++.+.+       ....+++|||+++++|.+++.....                      ..+++..++.++.|++.||
T Consensus        91 ~~~~~~~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l  163 (314)
T 2ivs_A           91 LYGACSQ-------DGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGM  163 (314)
T ss_dssp             EEEEECS-------SSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHH
T ss_pred             EEEEEec-------CCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHH
Confidence            9998865       5678999999999999999975431                      2488999999999999999


Q ss_pred             HHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccccc---ccccccccccccCCCC
Q 028725          143 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  202 (205)
Q Consensus       143 ~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~  202 (205)
                      .|||+   .+++||||||+||++++++.++|+|||++.......   ......++..|+|||.
T Consensus       164 ~~lH~---~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  223 (314)
T 2ivs_A          164 QYLAE---MKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIES  223 (314)
T ss_dssp             HHHHH---TTEECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHH
T ss_pred             HHHHH---CCCcccccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhh
Confidence            99999   799999999999999999999999999997665432   2233467788999995

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=3.4e-32  Score=207.56  Aligned_cols=169  Identities=19%  Similarity=0.314  Sum_probs=140.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .++|++.+.||+|+||.||+|... +++.|++|++...   .......+.+|+..++.++||||+++.+.+..       
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------   82 (276)
T 2h6d_A           10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVIST-------   82 (276)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-------
T ss_pred             eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEec-------
Confidence            478999999999999999999965 6899999999654   23456778899999999999999999998865       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....++++|++++++|.+++....  .+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||+
T Consensus        83 ~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~dfg~  157 (276)
T 2h6d_A           83 PTDFFMVMEYVSGGELFDYICKHG--RVEEMEARRLFQQILSAVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGL  157 (276)
T ss_dssp             SSEEEEEEECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHH---HCSSCCCCCGGGEEECTTSCEEECCCCG
T ss_pred             CCeEEEEEeccCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChhhEEECCCCCEEEeeccc
Confidence            568999999999999999997653  68899999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +.............++..|+|||..
T Consensus       158 ~~~~~~~~~~~~~~~~~~y~aPE~~  182 (276)
T 2h6d_A          158 SNMMSDGEFLRTSCGSPNYAAPEVI  182 (276)
T ss_dssp             GGCCCC-------------CCTGGG
T ss_pred             ccccCCCcceecccCCccccCHHHH
Confidence            9887765555556899999999974

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=7.2e-33  Score=211.65  Aligned_cols=175  Identities=24%  Similarity=0.374  Sum_probs=148.8

Q ss_pred             HHHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           16 LEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        16 ~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      -++|....++|++.+.||+|+||.||+|...++..||+|++... ....+.+.+|+.+++.++||||+++++++.+    
T Consensus         5 ~~~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~----   79 (279)
T 1qpc_A            5 EDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ----   79 (279)
T ss_dssp             TCTTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT-SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred             hhhcccCHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCC-cccHHHHHHHHHHHHhCCCcCcceEEEEEcC----
Confidence            34555667899999999999999999999887889999999744 3456788999999999999999999987643    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                          +..+++||++++++|.+++.......+++..++.++.|++.||.|||+   .+++|+||||+||++++++.++|+|
T Consensus        80 ----~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~D  152 (279)
T 1qpc_A           80 ----EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIAD  152 (279)
T ss_dssp             ----SSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECC
T ss_pred             ----CCcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHhhEEEcCCCCEEECC
Confidence                357899999999999999976433368899999999999999999999   7999999999999999999999999


Q ss_pred             CCchhhcccccc--cccccccccccCCCC
Q 028725          176 YNLPLLAENAEK--VGHVTPYSGSINPTN  202 (205)
Q Consensus       176 fg~a~~~~~~~~--~~~~~~~~~~~aPE~  202 (205)
                      ||++........  .....++..|+|||.
T Consensus       153 fg~~~~~~~~~~~~~~~~~~~~~y~aPE~  181 (279)
T 1qpc_A          153 FGLARLIEDNEYTAREGAKFPIKWTAPEA  181 (279)
T ss_dssp             CTTCEECSSSCEECCTTCCCCTTTSCHHH
T ss_pred             CcccccccCcccccccCCCCccCccChhh
Confidence            999987665432  223356778999995

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=1.9e-32  Score=209.58  Aligned_cols=174  Identities=20%  Similarity=0.372  Sum_probs=148.4

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccC----
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD----   96 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~----   96 (205)
                      ..++|++.+.||+|+||.||+|... +++.||+|.++...    ..+.+|+.+++.++||||+++.+++.......    
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   84 (284)
T 2a19_B            9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS   84 (284)
T ss_dssp             HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred             hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence            4578999999999999999999965 69999999997543    35678999999999999999998775422111    


Q ss_pred             -----CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCce
Q 028725           97 -----SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVA  171 (205)
Q Consensus        97 -----~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~  171 (205)
                           ......+++|||+++++|.+++.......+++..++.++.|++.||.|||+   .+++|+||||+||++++++.+
T Consensus        85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~  161 (284)
T 2a19_B           85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHS---KKLINRDLKPSNIFLVDTKQV  161 (284)
T ss_dssp             ----CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEE
T ss_pred             ccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCCHHHEEEcCCCCE
Confidence                 123468999999999999999976544578999999999999999999999   799999999999999999999


Q ss_pred             eEcCCCchhhcccccccccccccccccCCCC
Q 028725          172 KISSYNLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      +|+|||++.............++..|+|||.
T Consensus       162 kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~  192 (284)
T 2a19_B          162 KIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQ  192 (284)
T ss_dssp             EECCCTTCEESSCCSCCCCCCSCCTTSCHHH
T ss_pred             EECcchhheeccccccccccCCcccccChhh
Confidence            9999999987776665566689999999995

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=8e-33  Score=220.57  Aligned_cols=172  Identities=21%  Similarity=0.384  Sum_probs=145.0

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec--------CCcEEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCccccccccee
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK--------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCF   90 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~--------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~   90 (205)
                      ...++|.+.+.||+|+||.||+|...        .+..||+|+++... ......+.+|+++++.+ +||||+++++.+.
T Consensus        66 i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~  145 (382)
T 3tt0_A           66 LPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT  145 (382)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeec
Confidence            34578999999999999999999853        23579999997553 23346788999999999 8999999999886


Q ss_pred             eecccCCCCCeEEEEEeecCCCcHHHhhccCC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeec
Q 028725           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA--------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSN  156 (205)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~  156 (205)
                      .       .+..++|||++++++|.+++....              ...+++..++.++.|++.||.|||+   .+++||
T Consensus       146 ~-------~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~  215 (382)
T 3tt0_A          146 Q-------DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHR  215 (382)
T ss_dssp             S-------SSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCS
T ss_pred             c-------CCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---CCEecC
Confidence            5       567899999999999999997543              1358999999999999999999999   799999


Q ss_pred             CCccccEEeCCCCceeEcCCCchhhccccc---ccccccccccccCCCC
Q 028725          157 NLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  202 (205)
Q Consensus       157 dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~  202 (205)
                      ||||+||+++.++.++|+|||+++......   ......+|..|+|||.
T Consensus       216 Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~  264 (382)
T 3tt0_A          216 DLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEA  264 (382)
T ss_dssp             CCCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHH
T ss_pred             CCCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHH
Confidence            999999999999999999999998665432   2333467889999996

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=1.5e-32  Score=225.81  Aligned_cols=174  Identities=18%  Similarity=0.348  Sum_probs=149.3

Q ss_pred             HHHHHhcCCCcceeeccCcceEEEEEEecC-CcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        18 ~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~-~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      ++.....+|++.+.||+|+||.||+|.+.. +..||+|+++.. ....+.+.+|+.+++.++||||+++++++..     
T Consensus       214 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-----  287 (495)
T 1opk_A          214 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-----  287 (495)
T ss_dssp             CCBCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSS-SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-----
T ss_pred             ccccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCc-ccchHHHHHHHHHHHhcCCCCEeeEEEEEec-----
Confidence            344456789999999999999999999764 889999999754 3457789999999999999999999999865     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                        ....++||||+++++|.+++.......+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.++|+||
T Consensus       288 --~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DF  362 (495)
T 1opk_A          288 --EPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRNLAARNCLVGENHLVKVADF  362 (495)
T ss_dssp             --SSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECGGGCEEECCT
T ss_pred             --CCcEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChhhEEECCCCcEEEeec
Confidence              5678999999999999999986554678999999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhcccccc--cccccccccccCCCC
Q 028725          177 NLPLLAENAEK--VGHVTPYSGSINPTN  202 (205)
Q Consensus       177 g~a~~~~~~~~--~~~~~~~~~~~aPE~  202 (205)
                      |+++.......  .....++..|+|||.
T Consensus       363 G~a~~~~~~~~~~~~~~~~~~~y~aPE~  390 (495)
T 1opk_A          363 GLSRLMTGDTYTAHAGAKFPIKWTAPES  390 (495)
T ss_dssp             TCEECCTTCCEECCTTCCCCGGGCCHHH
T ss_pred             ccceeccCCceeecCCCcCCcceeCHhH
Confidence            99987654332  122355678999995

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=2.1e-32  Score=209.52  Aligned_cols=169  Identities=21%  Similarity=0.310  Sum_probs=147.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|++.+.||+|+||.||+|... +++.||+|++....  ......+.+|+.+++.++||||+++.+.+..       .
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~   77 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQE-------E   77 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC-------S
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEc-------C
Confidence            578999999999999999999954 58899999997553  2334678899999999999999999998865       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc---eeEcCC
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV---AKISSY  176 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~---~~l~Df  176 (205)
                      ...+++||++++++|.+.+..+.  .+++..++.++.|++.||.|||+   .+++||||||+||+++.++.   ++|+||
T Consensus        78 ~~~~~v~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~~~kl~Df  152 (284)
T 3kk8_A           78 SFHYLVFDLVTGGELFEDIVARE--FYSEADASHCIQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLADF  152 (284)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESSSSTTCCEEECCC
T ss_pred             CEEEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCcCcCCCCHHHEEEecCCCCCcEEEeec
Confidence            78899999999999999887654  68999999999999999999999   79999999999999986654   999999


Q ss_pred             CchhhcccccccccccccccccCCCCC
Q 028725          177 NLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |++.............+|..|+|||..
T Consensus       153 g~~~~~~~~~~~~~~~~~~~y~aPE~~  179 (284)
T 3kk8_A          153 GLAIEVNDSEAWHGFAGTPGYLSPEVL  179 (284)
T ss_dssp             TTCEECCSSCBCCCSCSCGGGCCHHHH
T ss_pred             eeeEEcccCccccCCCCCcCCcCchhh
Confidence            999877776666667899999999963

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=5e-33  Score=216.76  Aligned_cols=194  Identities=14%  Similarity=0.278  Sum_probs=133.1

Q ss_pred             CCCCCcccccCHHHHHHHhcCCCcceeeccCcceEEEEEEecC-Cc---EEEEEEeccc--CCcCHHHHHHHHHHHhccC
Q 028725            5 ALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKN-GT---FIAIRCLKMK--KSHSTRNFMHHIELISKLR   78 (205)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~-~~---~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~   78 (205)
                      ..+++......++++....++|++.+.||+|+||.||+|.... +.   .||+|+++..  .....+.+.+|+.+++.++
T Consensus         4 ~~~~~~~~~~~~~~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~   83 (323)
T 3qup_A            4 SLGISDELKEKLEDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFD   83 (323)
T ss_dssp             ------------CTTBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCC
T ss_pred             cccchHHHHHHhhhcccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCC
Confidence            3455555556666666777899999999999999999999543 32   7999999765  3345677899999999999


Q ss_pred             CCcccccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccC----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcee
Q 028725           79 HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH----AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVF  154 (205)
Q Consensus        79 ~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~  154 (205)
                      ||||+++++++......+ .....++++||+.+++|.+++...    ....+++..++.++.|++.||.|||+   .+++
T Consensus        84 h~~iv~~~~~~~~~~~~~-~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~---~~iv  159 (323)
T 3qup_A           84 HPHVAKLVGVSLRSRAKG-RLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSS---RNFI  159 (323)
T ss_dssp             CTTBCCCCEEEECC--------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHH---TTCC
T ss_pred             CCceehhhceeecccccc-CCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHc---CCcc
Confidence            999999999887522111 112348999999999999998632    11258999999999999999999999   7999


Q ss_pred             ecCCccccEEeCCCCceeEcCCCchhhccccccc---ccccccccccCCCC
Q 028725          155 SNNLKITDILLDQNLVAKISSYNLPLLAENAEKV---GHVTPYSGSINPTN  202 (205)
Q Consensus       155 h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~aPE~  202 (205)
                      ||||||+||+++.++.++|+|||+++........   ....++..|+|||.
T Consensus       160 H~Dikp~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~  210 (323)
T 3qup_A          160 HRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALES  210 (323)
T ss_dssp             CSCCSGGGEEECTTSCEEECCCCC-----------------CCGGGCCHHH
T ss_pred             cCCCCcceEEEcCCCCEEEeeccccccccccccccccccccCcccccCchh
Confidence            9999999999999999999999999876554322   23356778999996

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=4.2e-33  Score=213.77  Aligned_cols=174  Identities=18%  Similarity=0.344  Sum_probs=150.1

Q ss_pred             HHHHHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        18 ~~~~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      ++....++|++.+.||+|+||.||+|... ++..||+|++... ....+.+.+|+.+++.++||||+++++++.+     
T Consensus         7 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----   80 (288)
T 3kfa_A            7 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-----   80 (288)
T ss_dssp             TTBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC-STHHHHHHHHHHHHHHCCCTTBCCEEEEECS-----
T ss_pred             cccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEcc-----
Confidence            33345788999999999999999999965 4889999999743 3456778899999999999999999998865     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                        ....++|||++++++|.+++.......+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+||
T Consensus        81 --~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~l~Df  155 (288)
T 3kfa_A           81 --EPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADF  155 (288)
T ss_dssp             --SSSEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHH---HTCCCSCCSGGGEEECGGGCEEECCC
T ss_pred             --CCCEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHH---CCccCCCCCcceEEEcCCCCEEEccC
Confidence              5678999999999999999987655679999999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhccccc--ccccccccccccCCCC
Q 028725          177 NLPLLAENAE--KVGHVTPYSGSINPTN  202 (205)
Q Consensus       177 g~a~~~~~~~--~~~~~~~~~~~~aPE~  202 (205)
                      |++.......  ......++..|+|||.
T Consensus       156 g~~~~~~~~~~~~~~~~~~~~~y~aPE~  183 (288)
T 3kfa_A          156 GLSRLMTGDTYTAHAGAKFPIKWTAPES  183 (288)
T ss_dssp             CGGGTSCSSSSEEETTEEECGGGCCHHH
T ss_pred             ccceeccCCccccccCCccccCcCChhh
Confidence            9998776543  2233466788999995

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=1.7e-32  Score=223.63  Aligned_cols=172  Identities=16%  Similarity=0.192  Sum_probs=138.0

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc--CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK--KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|++.+.||+|+||.||+|.. .+++.||+|++...  .......+.+|+.+++.++||||+++++++...... ...
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~-~~~  139 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTL-EEF  139 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCST-TTC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCcc-ccC
Confidence            47899999999999999999995 46899999999754  233456788999999999999999999988642111 123


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++||||+.+ ++.+.+..    .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||++
T Consensus       140 ~~~~lv~E~~~~-~l~~~~~~----~l~~~~~~~~~~qil~aL~~lH~---~~iiHrDlkp~NIll~~~~~~kl~DFG~a  211 (464)
T 3ttj_A          140 QDVYLVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLA  211 (464)
T ss_dssp             CEEEEEEECCSE-EHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCCCC
T ss_pred             CeEEEEEeCCCC-CHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChHhEEEeCCCCEEEEEEEee
Confidence            578999999976 56666643    48889999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +............+|++|+|||..
T Consensus       212 ~~~~~~~~~~~~~gt~~y~aPE~~  235 (464)
T 3ttj_A          212 RTAGTSFMMTPYVVTRYYRAPEVI  235 (464)
T ss_dssp             -----CCCC----CCCTTCCHHHH
T ss_pred             eecCCCcccCCCcccccccCHHHH
Confidence            887766556667999999999963

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=4.9e-33  Score=215.94  Aligned_cols=173  Identities=14%  Similarity=0.279  Sum_probs=138.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcC---HHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHS---TRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~---~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .++|++.+.||+|+||.||+|.. .+++.||+|++.......   ...+.+|+.+++.++||||+++++.+....   ..
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~---~~   87 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAET---PA   87 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEE---TT
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccC---CC
Confidence            57899999999999999999995 568999999997653333   356788999999999999999999876522   11


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      +...++||||+++++|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+
T Consensus        88 ~~~~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~  162 (311)
T 3ork_A           88 GPLPYIVMEYVDGVTLRDIVHTEG--PMTPKRAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFGI  162 (311)
T ss_dssp             EEEEEEEEECCCEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEETTSCEEECCCSC
T ss_pred             CcccEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCCCcCCCCHHHEEEcCCCCEEEeeccC
Confidence            235699999999999999997653  68999999999999999999999   7999999999999999999999999999


Q ss_pred             hhhccccc----ccccccccccccCCCCC
Q 028725          179 PLLAENAE----KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~----~~~~~~~~~~~~aPE~~  203 (205)
                      +.......    ......||..|+|||..
T Consensus       163 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~  191 (311)
T 3ork_A          163 ARAIADSGNSVTQTAAVIGTAQYLSPEQA  191 (311)
T ss_dssp             C------------------CCTTCCHHHH
T ss_pred             cccccccccccccccccCcCcccCCHHHh
Confidence            98765543    22334689999999963

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=5.8e-33  Score=221.04  Aligned_cols=174  Identities=17%  Similarity=0.344  Sum_probs=145.2

Q ss_pred             HHHHHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        18 ~~~~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      .|....++|.+.+.||+|+||.||+|.+. +++.||+|+++.... .....+.+|+.+++.++||||+++++++..    
T Consensus       108 ~~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~----  183 (377)
T 3cbl_A          108 KWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQ----  183 (377)
T ss_dssp             TTBCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECS----
T ss_pred             ccEEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEec----
Confidence            34445678999999999999999999975 689999999875422 234567889999999999999999999865    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                         ....++||||+++++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|
T Consensus       184 ---~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nil~~~~~~~kl~D  256 (377)
T 3cbl_A          184 ---KQPIYIVMELVQGGDFLTFLRTEG-ARLRVKTLLQMVGDAAAGMEYLES---KCCIHRDLAARNCLVTEKNVLKISD  256 (377)
T ss_dssp             ---SSSCEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECC
T ss_pred             ---CCCcEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCcCCcccCHHHEEEcCCCcEEECc
Confidence               567899999999999999987543 358899999999999999999999   7999999999999999999999999


Q ss_pred             CCchhhccccccc---ccccccccccCCCC
Q 028725          176 YNLPLLAENAEKV---GHVTPYSGSINPTN  202 (205)
Q Consensus       176 fg~a~~~~~~~~~---~~~~~~~~~~aPE~  202 (205)
                      ||+++........   ....++..|+|||.
T Consensus       257 fG~s~~~~~~~~~~~~~~~~~~~~y~aPE~  286 (377)
T 3cbl_A          257 FGMSREEADGVYAASGGLRQVPVKWTAPEA  286 (377)
T ss_dssp             GGGCEECTTSEEECCSSCCEEEGGGSCHHH
T ss_pred             CCCceecCCCceeecCCCCCCCcCcCCHhH
Confidence            9999765443211   12245678999995

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=2.6e-32  Score=213.49  Aligned_cols=167  Identities=13%  Similarity=0.166  Sum_probs=143.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|++.+.||+|+||.||+|.. .+++.||+|++....  ....+.+|+.+++.+ +||||+++.+++..       ..
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~-------~~   78 (330)
T 2izr_A            8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS--RAPQLHLEYRFYKQLGSGDGIPQVYYFGPC-------GK   78 (330)
T ss_dssp             TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC--SSCCHHHHHHHHHHHCSCTTSCCEEEEEEE-------TT
T ss_pred             cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEecccc--chHHHHHHHHHHHHhhCCCCCCEEEEEEec-------CC
Confidence            57899999999999999999995 568999999987543  234578899999999 89999999998876       66


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc-----eeEcC
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV-----AKISS  175 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~-----~~l~D  175 (205)
                      ..++|||++ +++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.     ++|+|
T Consensus        79 ~~~lv~e~~-~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~---~~iiHrDlkp~Nill~~~~~~~~~~~kl~D  153 (330)
T 2izr_A           79 YNAMVLELL-GPSLEDLFDLCD-RTFSLKTVLMIAIQLISRMEYVHS---KNLIYRDVKPENFLIGRPGNKTQQVIHIID  153 (330)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECCGGGTCTTSEEECC
T ss_pred             ccEEEEEeC-CCCHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeeeccCCCCCCceEEEEE
Confidence            889999999 889999998642 479999999999999999999999   79999999999999998887     99999


Q ss_pred             CCchhhcccccc--------cccccccccccCCCCC
Q 028725          176 YNLPLLAENAEK--------VGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~~--------~~~~~~~~~~~aPE~~  203 (205)
                      ||+++.......        .....||..|+|||..
T Consensus       154 Fg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  189 (330)
T 2izr_A          154 FALAKEYIDPETKKHIPYREHKSLTGTARYMSINTH  189 (330)
T ss_dssp             CTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHH
T ss_pred             cccceeeecCCCCccccccccCCcCCCccccChHHH
Confidence            999986654332        2356899999999964

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=1.2e-32  Score=211.27  Aligned_cols=167  Identities=19%  Similarity=0.323  Sum_probs=144.9

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CC-------cEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NG-------TFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~-------~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   94 (205)
                      .++|.+.+.||+|+||.||+|... ++       ..|++|++........+.+.+|+.+++.++||||+++++++.+   
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---   83 (289)
T 4fvq_A            7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVC---   83 (289)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECC---
T ss_pred             hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEe---
Confidence            478999999999999999999954 33       4799999977666677889999999999999999999998865   


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc----
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV----  170 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~----  170 (205)
                          .+..++||||+++++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.    
T Consensus        84 ----~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~  155 (289)
T 4fvq_A           84 ----GDENILVQEFVKFGSLDTYLKKNK-NCINILWKLEVAKQLAAAMHFLEE---NTLIHGNVCAKNILLIREEDRKTG  155 (289)
T ss_dssp             ----TTCCEEEEECCTTCBHHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEEECCBGGGT
T ss_pred             ----CCCCEEEEECCCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHhh---CCeECCCcCcceEEEecCCccccc
Confidence                567899999999999999998654 348899999999999999999999   79999999999999998876    


Q ss_pred             ----eeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          171 ----AKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       171 ----~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                          ++|+|||++.......   ...++..|+|||..
T Consensus       156 ~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~  189 (289)
T 4fvq_A          156 NPPFIKLSDPGISITVLPKD---ILQERIPWVPPECI  189 (289)
T ss_dssp             BCCEEEECCCCSCTTTSCHH---HHHHTTTTSCHHHH
T ss_pred             ccceeeeccCcccccccCcc---ccCCcCcccCHHHh
Confidence                9999999997665432   24678899999953

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=3.4e-32  Score=210.03  Aligned_cols=172  Identities=20%  Similarity=0.364  Sum_probs=143.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-----cCCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-----KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-----~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      .++|++.+.||+|+||.||+|.+     .+++.||+|++.... ......+.+|+.+++.++||||+++.+++..     
T Consensus        20 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----   94 (302)
T 4e5w_A           20 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTE-----   94 (302)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----
T ss_pred             hhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEec-----
Confidence            36699999999999999999984     358899999997553 4456788999999999999999999998875     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                      ......+++||++++++|.+++.... ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+||
T Consensus        95 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Df  170 (302)
T 4e5w_A           95 DGGNGIKLIMEFLPSGSLKEYLPKNK-NKINLKQQLKYAVQICKGMDYLGS---RQYVHRDLAARNVLVESEHQVKIGDF  170 (302)
T ss_dssp             ---CCEEEEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCC
T ss_pred             CCCceEEEEEEeCCCCcHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHhhc---CCcccCCCchheEEEcCCCCEEECcc
Confidence            22356899999999999999996443 368999999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhccccc----ccccccccccccCCCCC
Q 028725          177 NLPLLAENAE----KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~----~~~~~~~~~~~~aPE~~  203 (205)
                      |++.......    ......+|..|+|||..
T Consensus       171 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  201 (302)
T 4e5w_A          171 GLTKAIETDKEYYTVKDDRDSPVFWYAPECL  201 (302)
T ss_dssp             TTCEECCTTCCEEECCCCTTCCGGGCCHHHH
T ss_pred             cccccccCCCcceeccCCCCCCccccCCeee
Confidence            9998766543    22335788889999953

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=5.9e-32  Score=210.04  Aligned_cols=169  Identities=17%  Similarity=0.268  Sum_probs=140.9

Q ss_pred             hcCCCcc-eeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTS-AFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~-~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .+.|++. +.||+|+||.||+|.. .+++.||+|++..........+.+|+.++.++ +||||+++++++.+       .
T Consensus        11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~-------~   83 (316)
T 2ac3_A           11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEE-------E   83 (316)
T ss_dssp             TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-------T
T ss_pred             ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEee-------C
Confidence            4678885 7899999999999994 46899999999877666778899999999885 79999999999876       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc---eeEcCC
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV---AKISSY  176 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~---~~l~Df  176 (205)
                      +..++|||++++++|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||+++.++.   ++|+||
T Consensus        84 ~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~~~kl~Df  158 (316)
T 2ac3_A           84 DRFYLVFEKMRGGSILSHIHKRR--HFNELEASVVVQDVASALDFLHN---KGIAHRDLKPENILCEHPNQVSPVKICDF  158 (316)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESCSSSSCSEEECCT
T ss_pred             CEEEEEEEcCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEEccCCCcCceEEEEc
Confidence            78999999999999999997653  68899999999999999999999   79999999999999997765   999999


Q ss_pred             Cchhhccccc--------ccccccccccccCCCCC
Q 028725          177 NLPLLAENAE--------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~--------~~~~~~~~~~~~aPE~~  203 (205)
                      |++.......        ......+|..|+|||..
T Consensus       159 g~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  193 (316)
T 2ac3_A          159 DLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVV  193 (316)
T ss_dssp             TCCC-------------------CCSGGGCCHHHH
T ss_pred             cCccccccCCccccccccccccccCCcCccChHHh
Confidence            9987654321        12234699999999963

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=4.6e-32  Score=207.48  Aligned_cols=169  Identities=17%  Similarity=0.292  Sum_probs=143.3

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC------cCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS------HSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      .++|++.+.||+|+||.||+|... +++.+|+|+++....      ...+.+.+|+.+++.++||||+++.+++.+    
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~----   79 (283)
T 3bhy_A            4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFEN----   79 (283)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC----
T ss_pred             hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecC----
Confidence            467999999999999999999965 689999999975431      246778999999999999999999998875    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC----ce
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL----VA  171 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~----~~  171 (205)
                         ....+++||++++++|.+++....  .+++..++.++.|++.||.|||+   .+++|+||||+||+++.++    .+
T Consensus        80 ---~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~~~~  151 (283)
T 3bhy_A           80 ---KTDVVLILELVSGGELFDFLAEKE--SLTEDEATQFLKQILDGVHYLHS---KRIAHFDLKPENIMLLDKNVPNPRI  151 (283)
T ss_dssp             ---SSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSSSSCCE
T ss_pred             ---CCeEEEEEeecCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCChHHEEEecCCCCCCce
Confidence               668999999999999999997543  68999999999999999999999   7999999999999999776    89


Q ss_pred             eEcCCCchhhcccccccccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +|+|||++.............++..|+|||..
T Consensus       152 kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~  183 (283)
T 3bhy_A          152 KLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIV  183 (283)
T ss_dssp             EECCCTTCEECC--------CCCGGGCCHHHH
T ss_pred             EEEecccceeccCCCcccccCCCcCccCccee
Confidence            99999999877665555556899999999953

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=3.6e-32  Score=210.77  Aligned_cols=168  Identities=18%  Similarity=0.294  Sum_probs=139.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCc--CHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH--STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|++.+.||+|+||.||+|... +++.||+|++......  ....+.+|+.+++.++||||+++++++..       .
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-------~   74 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRR-------K   74 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-------T
T ss_pred             cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeec-------C
Confidence            478999999999999999999964 5899999998654322  24567789999999999999999999876       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++|||++++++|.+++....  .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++
T Consensus        75 ~~~~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~i~~~l~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~  149 (311)
T 4agu_A           75 RRLHLVFEYCDHTVLHELDRYQR--GVPEHLVKSITWQTLQAVNFCHK---HNCIHRDVKPENILITKHSVIKLCDFGFA  149 (311)
T ss_dssp             TEEEEEEECCSEEHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             CeEEEEEEeCCCchHHHHHhhhc--CCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCChhhEEEcCCCCEEEeeCCCc
Confidence            78999999999999999887554  68999999999999999999999   79999999999999999999999999999


Q ss_pred             hhccccc-ccccccccccccCCCC
Q 028725          180 LLAENAE-KVGHVTPYSGSINPTN  202 (205)
Q Consensus       180 ~~~~~~~-~~~~~~~~~~~~aPE~  202 (205)
                      ....... ......+|..|+|||.
T Consensus       150 ~~~~~~~~~~~~~~~~~~y~aPE~  173 (311)
T 4agu_A          150 RLLTGPSDYYDDEVATRWYRSPEL  173 (311)
T ss_dssp             EECC------------GGGCCHHH
T ss_pred             hhccCcccccCCCcCCccccChHH
Confidence            8766433 3344589999999995

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.98  E-value=2.2e-32  Score=207.51  Aligned_cols=169  Identities=20%  Similarity=0.336  Sum_probs=146.7

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ..++|++.+.||+|+||.||+|...+++.||+|++.... ...+.+.+|+.+++.++||||+++.+.+.+       .+.
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~   77 (267)
T 3t9t_A            6 DPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-------QAP   77 (267)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTT-BCHHHHHHHHHHHHTCCCTTBCCEEEEECS-------SSS
T ss_pred             chhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcc-------CCC
Confidence            457899999999999999999998888899999997543 345678999999999999999999998865       567


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .+++||++++++|.+++.... ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++..
T Consensus        78 ~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~  153 (267)
T 3t9t_A           78 ICLVTEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRF  153 (267)
T ss_dssp             CEEEECCCTTCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECGGGCEEECCTTGGGG
T ss_pred             eEEEEeCCCCCcHHHHHhhCc-ccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCchheEEECCCCCEEEcccccccc
Confidence            899999999999999997653 468899999999999999999999   7999999999999999999999999999987


Q ss_pred             ccccc--ccccccccccccCCCC
Q 028725          182 AENAE--KVGHVTPYSGSINPTN  202 (205)
Q Consensus       182 ~~~~~--~~~~~~~~~~~~aPE~  202 (205)
                      .....  ......++..|+|||.
T Consensus       154 ~~~~~~~~~~~~~~~~~y~aPE~  176 (267)
T 3t9t_A          154 VLDDQYTSSTGTKFPVKWASPEV  176 (267)
T ss_dssp             BCCHHHHSTTSTTCCGGGCCHHH
T ss_pred             cccccccccccccccccccChhh
Confidence            65432  2233467788999995

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.98  E-value=7.9e-32  Score=205.41  Aligned_cols=171  Identities=20%  Similarity=0.293  Sum_probs=148.2

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ..++|++.+.||+|+||.||+|... +++.||+|+++... ....+.+.+|+.+++.++||||+++++.+.+       .
T Consensus         5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~   77 (276)
T 2yex_A            5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRRE-------G   77 (276)
T ss_dssp             HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-------T
T ss_pred             eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEc-------C
Confidence            4578999999999999999999965 68999999997553 3345778899999999999999999998876       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++++|++++++|.+++....  .+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++
T Consensus        78 ~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~  152 (276)
T 2yex_A           78 NIQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLA  152 (276)
T ss_dssp             TEEEEEEECCTTEEGGGGSBTTT--BCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred             CEEEEEEEecCCCcHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCChHHEEEccCCCEEEeeCCCc
Confidence            78899999999999999987653  68999999999999999999999   79999999999999999999999999999


Q ss_pred             hhccccc---ccccccccccccCCCCCC
Q 028725          180 LLAENAE---KVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       180 ~~~~~~~---~~~~~~~~~~~~aPE~~~  204 (205)
                      .......   ......++..|+|||...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~  180 (276)
T 2yex_A          153 TVFRYNNRERLLNKMCGTLPYVAPELLK  180 (276)
T ss_dssp             EECEETTEECCBCCCCSCGGGCCGGGGT
T ss_pred             cccCCCcchhcccCCccccCccChHHHh
Confidence            7654332   233457899999999753

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.98  E-value=1.9e-32  Score=216.55  Aligned_cols=181  Identities=18%  Similarity=0.256  Sum_probs=152.2

Q ss_pred             CcccccCHHHHHHHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccC-----CCcc
Q 028725            9 PAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-----HCHL   82 (205)
Q Consensus         9 ~~~~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-----~~~i   82 (205)
                      .+...++..+-....++|++.+.||+|+||.||+|.. .+++.||+|+++.. ......+..|+.+++.++     ||||
T Consensus        20 ~~~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~i   98 (360)
T 3llt_A           20 DEIVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNI   98 (360)
T ss_dssp             CGGGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGB
T ss_pred             ccceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCe
Confidence            3445556666666678999999999999999999996 46889999999632 234456677899999886     9999


Q ss_pred             cccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCcccc
Q 028725           83 VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITD  162 (205)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~n  162 (205)
                      +++++.+..       ....++|||++ +++|.+++.......+++..+..++.|++.||.|||+   .+|+||||||+|
T Consensus        99 v~~~~~~~~-------~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~N  167 (360)
T 3llt_A           99 VKYHGKFMY-------YDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRK---MSLTHTDLKPEN  167 (360)
T ss_dssp             CCEEEEEEE-------TTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGG
T ss_pred             ecccceeeE-------CCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCccc
Confidence            999998876       56899999999 8899999987655569999999999999999999999   799999999999


Q ss_pred             EEeCC-------------------------CCceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          163 ILLDQ-------------------------NLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       163 ilv~~-------------------------~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |+++.                         ++.++|+|||++......  .....+|..|+|||..
T Consensus       168 Ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~--~~~~~gt~~y~aPE~~  231 (360)
T 3llt_A          168 ILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY--HGSIINTRQYRAPEVI  231 (360)
T ss_dssp             EEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC--CCSCCSCGGGCCHHHH
T ss_pred             EEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCC--CcCccCcccccCcHHH
Confidence            99975                         789999999999865542  3346899999999964

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.98  E-value=2e-32  Score=213.80  Aligned_cols=171  Identities=19%  Similarity=0.347  Sum_probs=147.2

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-----cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-----KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .++|++.+.||+|+||.||+|.+     .+++.||+|++........+.+.+|+.+++.++||||+++.+++..     .
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~   96 (327)
T 3lxl_A           22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYG-----P   96 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----S
T ss_pred             hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEec-----C
Confidence            47899999999999999999984     3588999999986655566778999999999999999999998764     2


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      .....++||||+++++|.+++.... ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||
T Consensus        97 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg  172 (327)
T 3lxl_A           97 GRQSLRLVMEYLPSGCLRDFLQRHR-ARLDASRLLLYSSQICKGMEYLGS---RRCVHRDLAARNILVESEAHVKIADFG  172 (327)
T ss_dssp             SSCEEEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCGG
T ss_pred             CCceEEEEEeecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCChhhEEECCCCCEEEcccc
Confidence            3567899999999999999997543 368999999999999999999999   799999999999999999999999999


Q ss_pred             chhhccccc----ccccccccccccCCCC
Q 028725          178 LPLLAENAE----KVGHVTPYSGSINPTN  202 (205)
Q Consensus       178 ~a~~~~~~~----~~~~~~~~~~~~aPE~  202 (205)
                      ++.......    ......++..|+|||.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  201 (327)
T 3lxl_A          173 LAKLLPLDKDYYVVREPGQSPIFWYAPES  201 (327)
T ss_dssp             GCEECCTTCSEEECSSCCCSCGGGSCHHH
T ss_pred             cceecccCCccceeeccCCccccccCHHH
Confidence            998765433    2233468888999995

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.98  E-value=1.9e-32  Score=214.34  Aligned_cols=174  Identities=18%  Similarity=0.306  Sum_probs=136.6

Q ss_pred             HHHHHHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeec
Q 028725           17 EELEEATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECY   93 (205)
Q Consensus        17 ~~~~~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   93 (205)
                      ..-....++|++.+.||+|+||.||+|.. .+++.||+|+++....  .....+.+|+.+++.++||||+++.+++.+  
T Consensus        27 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~--  104 (329)
T 3gbz_A           27 APSATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHH--  104 (329)
T ss_dssp             -----CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEE--
T ss_pred             CCcccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEec--
Confidence            33445678999999999999999999995 4689999999975532  234567789999999999999999999876  


Q ss_pred             ccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC-----CC
Q 028725           94 FDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD-----QN  168 (205)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~-----~~  168 (205)
                           ....++||||+.+ +|.+++....  .+++..++.++.|++.||.|||+   .+|+||||||+||+++     ..
T Consensus       105 -----~~~~~lv~e~~~~-~L~~~~~~~~--~~~~~~~~~i~~ql~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~  173 (329)
T 3gbz_A          105 -----NHRLHLIFEYAEN-DLKKYMDKNP--DVSMRVIKSFLYQLINGVNFCHS---RRCLHRDLKPQNLLLSVSDASET  173 (329)
T ss_dssp             -----TTEEEEEEECCSE-EHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEC-----C
T ss_pred             -----CCEEEEEEecCCC-CHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCEECCCCCHHHEEEecCCCCcc
Confidence                 6789999999975 9999998764  68999999999999999999999   7999999999999994     45


Q ss_pred             CceeEcCCCchhhccccc-ccccccccccccCCCCC
Q 028725          169 LVAKISSYNLPLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       169 ~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      +.++|+|||+++...... ......+|..|+|||..
T Consensus       174 ~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~  209 (329)
T 3gbz_A          174 PVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPEIL  209 (329)
T ss_dssp             CEEEECCTTHHHHHC-----------CCTTCCHHHH
T ss_pred             ceEEECcCCCccccCCcccccCCCcCCccccCHHHh
Confidence            569999999998765432 33445789999999963

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.98  E-value=6.9e-33  Score=225.41  Aligned_cols=175  Identities=24%  Similarity=0.396  Sum_probs=143.4

Q ss_pred             HHHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           16 LEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        16 ~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      ...|....++|++.+.||+|+||.||+|.+.++..||+|+++... ...+.+.+|+.+++.++||||+++++++.+    
T Consensus       176 ~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----  250 (452)
T 1fmk_A          176 KDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE----  250 (452)
T ss_dssp             TTCSBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred             ccccccChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC----
Confidence            344555667899999999999999999998877889999997543 446788999999999999999999988743    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                          ...++||||+++++|.+++....+..+++..++.++.|++.||.|||+   .+++||||||+||++++++.++|+|
T Consensus       251 ----~~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~D  323 (452)
T 1fmk_A          251 ----EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVAD  323 (452)
T ss_dssp             ----SSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECC
T ss_pred             ----CceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChhhEEECCCCCEEECC
Confidence                457999999999999999975433468899999999999999999999   7999999999999999999999999


Q ss_pred             CCchhhcccccc--cccccccccccCCCC
Q 028725          176 YNLPLLAENAEK--VGHVTPYSGSINPTN  202 (205)
Q Consensus       176 fg~a~~~~~~~~--~~~~~~~~~~~aPE~  202 (205)
                      ||+++.......  .....++..|+|||.
T Consensus       324 fG~a~~~~~~~~~~~~~~~~~~~y~aPE~  352 (452)
T 1fmk_A          324 FGLARLIEDNEYTARQGAKFPIKWTAPEA  352 (452)
T ss_dssp             CCTTC--------------CCGGGSCHHH
T ss_pred             CccceecCCCceecccCCcccccccCHhH
Confidence            999987654321  122356788999995

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.98  E-value=2.5e-32  Score=214.51  Aligned_cols=175  Identities=23%  Similarity=0.396  Sum_probs=144.4

Q ss_pred             HHHHHhcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCcccccccce
Q 028725           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHC   89 (205)
Q Consensus        18 ~~~~~~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~   89 (205)
                      ++....++|.+.+.||+|+||.||+|...      ++..||+|++.... ......+.+|+.+++.+ +||||+++++.+
T Consensus        39 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  118 (344)
T 1rjb_A           39 KWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGAC  118 (344)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             CcccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            34455688999999999999999999952      35689999997542 34567789999999999 899999999988


Q ss_pred             eeecccCCCCCeEEEEEeecCCCcHHHhhccCCC---------------------CCCCHHHHHHHHHHHHHHHHHhhcC
Q 028725           90 FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAW---------------------QSLTWTQRISAAIGVARGIQFLHTG  148 (205)
Q Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~---------------------~~~~~~~~~~i~~~i~~~l~~lh~~  148 (205)
                      ..       .+..++||||+++++|.+++.....                     ..+++..++.++.|++.||.|||+ 
T Consensus       119 ~~-------~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-  190 (344)
T 1rjb_A          119 TL-------SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF-  190 (344)
T ss_dssp             CS-------SSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH-
T ss_pred             ee-------CCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHh-
Confidence            65       5678999999999999999976432                     237889999999999999999999 


Q ss_pred             CCCceeecCCccccEEeCCCCceeEcCCCchhhcccccc---cccccccccccCCCC
Q 028725          149 IVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTN  202 (205)
Q Consensus       149 ~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~  202 (205)
                        .+++||||||+||+++.++.++|+|||++........   .....+|..|+|||.
T Consensus       191 --~~ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~  245 (344)
T 1rjb_A          191 --KSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPES  245 (344)
T ss_dssp             --TTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHH
T ss_pred             --CCcccCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHH
Confidence              7999999999999999999999999999986654432   233467788999995

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.98  E-value=2e-32  Score=216.38  Aligned_cols=169  Identities=19%  Similarity=0.295  Sum_probs=145.2

Q ss_pred             hcCCCcceeeccCcceEEEEEEe----cCCcEEEEEEecccC----CcCHHHHHHHHHHHhcc-CCCcccccccceeeec
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL----KNGTFIAIRCLKMKK----SHSTRNFMHHIELISKL-RHCHLVSALGHCFECY   93 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~----~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~   93 (205)
                      .++|++.+.||+|+||.||+|..    .+++.||+|+++...    ......+.+|+.+++.+ .||||+++.+.+..  
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~--  130 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT--  130 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEE--
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEee--
Confidence            37899999999999999999996    368999999996542    23455677899999999 69999999998876  


Q ss_pred             ccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeE
Q 028725           94 FDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  173 (205)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l  173 (205)
                           ....++||||+++++|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|
T Consensus       131 -----~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kl  200 (355)
T 1vzo_A          131 -----ETKLHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVL  200 (355)
T ss_dssp             -----TTEEEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEE
T ss_pred             -----CceEEEEeecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCcEEE
Confidence                 668999999999999999997653  68899999999999999999999   79999999999999999999999


Q ss_pred             cCCCchhhccccc--ccccccccccccCCCCC
Q 028725          174 SSYNLPLLAENAE--KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       174 ~Dfg~a~~~~~~~--~~~~~~~~~~~~aPE~~  203 (205)
                      +|||+++......  ......+|..|+|||..
T Consensus       201 ~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~  232 (355)
T 1vzo_A          201 TDFGLSKEFVADETERAYDFCGTIEYMAPDIV  232 (355)
T ss_dssp             SCSSEEEECCGGGGGGGCGGGSCCTTCCHHHH
T ss_pred             eeCCCCeecccCCCCcccCcccCcCccChhhh
Confidence            9999997654332  33445899999999964

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.98  E-value=6.6e-32  Score=208.83  Aligned_cols=169  Identities=18%  Similarity=0.346  Sum_probs=143.9

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ..++|.+.+.||+|+||.||+|... +|+.||+|+++.........+.+|+.+++.++||||+++.+++.+       ..
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~   79 (304)
T 2jam_A            7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYES-------TT   79 (304)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEEC-------SS
T ss_pred             hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhccc-------CC
Confidence            3578999999999999999999964 689999999986655556678899999999999999999998865       67


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEe---CCCCceeEcCCC
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL---DQNLVAKISSYN  177 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv---~~~~~~~l~Dfg  177 (205)
                      ..+++||++++++|.+++....  .+++..++.++.|++.||.|||+   .+++|+||||+||++   +.++.++|+|||
T Consensus        80 ~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg  154 (304)
T 2jam_A           80 HYYLVMQLVSGGELFDRILERG--VYTEKDASLVIQQVLSAVKYLHE---NGIVHRDLKPENLLYLTPEENSKIMITDFG  154 (304)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCSCCGGGCEESSSSTTCCEEBCSCS
T ss_pred             EEEEEEEcCCCccHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEecCCCCCCEEEccCC
Confidence            8999999999999999987543  68899999999999999999999   799999999999999   678899999999


Q ss_pred             chhhcccccccccccccccccCCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ++...... ......++..|+|||..
T Consensus       155 ~~~~~~~~-~~~~~~~~~~y~aPE~~  179 (304)
T 2jam_A          155 LSKMEQNG-IMSTACGTPGYVAPEVL  179 (304)
T ss_dssp             TTCCCCCB-TTHHHHSCCCBCCTTTB
T ss_pred             cceecCCC-ccccccCCCCccChHHh
Confidence            99765543 22335799999999975

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.98  E-value=4.2e-32  Score=207.47  Aligned_cols=169  Identities=20%  Similarity=0.349  Sum_probs=142.7

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ..++|++.+.||+|+||.||+|... ++..||+|++....   ......+.+|+.+++.++||||+++.+++.+      
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~------   80 (279)
T 3fdn_A            7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHD------   80 (279)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC------
T ss_pred             ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEec------
Confidence            3578999999999999999999954 57799999986432   3345678899999999999999999998866      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ....+++|||+++++|.+++....  .+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||
T Consensus        81 -~~~~~lv~e~~~~~~l~~~l~~~~--~~~~~~~~~~~~qi~~~l~~LH~---~~i~H~dlkp~Nili~~~~~~~l~Dfg  154 (279)
T 3fdn_A           81 -ATRVYLILEYAPLGTVYRELQKLS--KFDEQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFG  154 (279)
T ss_dssp             -SSEEEEEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHT---TTCEECCCCGGGEEECTTSCEEECSCC
T ss_pred             -CCEEEEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCEecccCChHhEEEcCCCCEEEEecc
Confidence             678999999999999999987653  68899999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccccccccccccccCCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ++....... .....++..|+|||..
T Consensus       155 ~~~~~~~~~-~~~~~~~~~y~aPE~~  179 (279)
T 3fdn_A          155 WSVHAPSSR-RTDLCGTLDYLPPEMI  179 (279)
T ss_dssp             EESCC---------CCCCTTCCHHHH
T ss_pred             ccccCCccc-ccccCCCCCccCHhHh
Confidence            986555433 3345899999999964

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.98  E-value=9.8e-33  Score=214.96  Aligned_cols=185  Identities=20%  Similarity=0.326  Sum_probs=154.0

Q ss_pred             CCcccccCHHHHHHHhcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccCC-cCHHHHHHHHHHHhccCCC
Q 028725            8 LPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHC   80 (205)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~   80 (205)
                      .+....+..+++....++|++.+.||+|+||.||+|...      +++.||+|.+..... .....+.+|+.+++.++||
T Consensus         9 ~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~   88 (322)
T 1p4o_A            9 FSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCH   88 (322)
T ss_dssp             SBCCSCCCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCT
T ss_pred             cccccccChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCC
Confidence            445566777788888899999999999999999999854      367899999975432 3345688999999999999


Q ss_pred             cccccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCC--------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCc
Q 028725           81 HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA--------WQSLTWTQRISAAIGVARGIQFLHTGIVPG  152 (205)
Q Consensus        81 ~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~  152 (205)
                      ||+++++++.+       ....+++||++++++|.+++....        ...+++..++.++.|++.||.|||+   .+
T Consensus        89 ~i~~~~~~~~~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~  158 (322)
T 1p4o_A           89 HVVRLLGVVSQ-------GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NK  158 (322)
T ss_dssp             TBCCEEEEECS-------SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TT
T ss_pred             CEeeeEEEEcc-------CCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHH---CC
Confidence            99999998865       567899999999999999986421        1356889999999999999999999   79


Q ss_pred             eeecCCccccEEeCCCCceeEcCCCchhhccccc---ccccccccccccCCCC
Q 028725          153 VFSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  202 (205)
Q Consensus       153 i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~  202 (205)
                      ++||||||+||+++.++.++|+|||++.......   ......++..|+|||.
T Consensus       159 i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  211 (322)
T 1p4o_A          159 FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPES  211 (322)
T ss_dssp             CBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHH
T ss_pred             CccCCCccceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhh
Confidence            9999999999999999999999999997665433   2223466888999995

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.98  E-value=7.1e-32  Score=216.34  Aligned_cols=170  Identities=16%  Similarity=0.231  Sum_probs=132.9

Q ss_pred             hcCCCcc-eeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHh-ccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTS-AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELIS-KLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~-~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~-~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|.+. +.||+|+||.||+|... +++.||+|+++.     ...+.+|+.++. ..+||||+++++++....   ...
T Consensus        60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~---~~~  131 (400)
T 1nxk_A           60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLY---AGR  131 (400)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEE---TTE
T ss_pred             cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEeEEEeecc---cCC
Confidence            4566666 68999999999999954 688999999963     245667887764 458999999999875421   124


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC---CCceeEcCC
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---NLVAKISSY  176 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~---~~~~~l~Df  176 (205)
                      ..+++||||+++++|.+++.......+++..++.++.|++.||.|||+   .+|+||||||+||+++.   ++.++|+||
T Consensus       132 ~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~~~~kl~DF  208 (400)
T 1nxk_A          132 KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDF  208 (400)
T ss_dssp             EEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSTTCCEEECCC
T ss_pred             cEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCcCcceEEEecCCCCccEEEEec
Confidence            578999999999999999987654579999999999999999999999   79999999999999997   789999999


Q ss_pred             CchhhcccccccccccccccccCCCCC
Q 028725          177 NLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |+++............+|..|+|||..
T Consensus       209 G~a~~~~~~~~~~~~~gt~~y~aPE~~  235 (400)
T 1nxk_A          209 GFAKETTSHNSLTTPCYTPYYVAPEVL  235 (400)
T ss_dssp             TTCEECC-----------CTTCCGGGS
T ss_pred             ccccccCCCCccccCCCCCCccCHhhc
Confidence            999877665555567899999999975

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.98  E-value=5.6e-32  Score=212.79  Aligned_cols=171  Identities=13%  Similarity=0.236  Sum_probs=148.3

Q ss_pred             hcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcC-----------------HHHHHHHHHHHhccCCCccccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHS-----------------TRNFMHHIELISKLRHCHLVSA   85 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~-----------------~~~~~~e~~~l~~l~~~~i~~~   85 (205)
                      .++|++.+.||+|+||.||+|.. +++.||+|++.......                 ...+.+|+.+++.++||||+++
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  108 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC  108 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence            57899999999999999999999 89999999996542111                 1788999999999999999999


Q ss_pred             ccceeeecccCCCCCeEEEEEeecCCCcHHHh------hccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCc
Q 028725           86 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW------ISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLK  159 (205)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~------~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlk  159 (205)
                      .+++.+       .+..++||||+++++|.++      +.......+++..++.++.|++.||.|||+.  .+++|+||+
T Consensus       109 ~~~~~~-------~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~dl~  179 (348)
T 2pml_X          109 EGIITN-------YDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNE--KNICHRDVK  179 (348)
T ss_dssp             SEEEES-------SSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT--SCEECCCCC
T ss_pred             EEEEee-------CCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhcc--CCEeecCCC
Confidence            999876       5689999999999999998      6554346799999999999999999999972  499999999


Q ss_pred             cccEEeCCCCceeEcCCCchhhcccccccccccccccccCCCCCC
Q 028725          160 ITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       160 p~nilv~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~~  204 (205)
                      |+||+++.++.++|+|||++...... ......++..|+|||...
T Consensus       180 p~Nil~~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~y~aPE~~~  223 (348)
T 2pml_X          180 PSNILMDKNGRVKLSDFGESEYMVDK-KIKGSRGTYEFMPPEFFS  223 (348)
T ss_dssp             GGGEEECTTSCEEECCCTTCEECBTT-EECSSCSCGGGCCGGGGS
T ss_pred             hHhEEEcCCCcEEEeccccccccccc-cccCCCCCcCccCchhhc
Confidence            99999999999999999999876554 344568999999999753

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.98  E-value=3.9e-32  Score=230.29  Aligned_cols=170  Identities=19%  Similarity=0.286  Sum_probs=146.7

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhcc-CCCcccccccceeeecccC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~   96 (205)
                      ..++|++.+.||+|+||.||+|... +++.||+|++++.   .......+..|..++..+ .||+|+++.+.+.+     
T Consensus       339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~-----  413 (674)
T 3pfq_A          339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT-----  413 (674)
T ss_dssp             -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBC-----
T ss_pred             cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEe-----
Confidence            4578999999999999999999954 5889999999754   345566788899999887 69999999988765     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                        ...+++||||+++++|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+||
T Consensus       414 --~~~~~lV~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~---~gIiHrDLKp~NILl~~~g~ikL~DF  486 (674)
T 3pfq_A          414 --MDRLYFVMEYVNGGDLMYHIQQVG--RFKEPHAVFYAAEIAIGLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIADF  486 (674)
T ss_dssp             --SSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TSEECCCCCSTTEEECSSSCEEECCC
T ss_pred             --CCEEEEEEeCcCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeEeccCChhhEEEcCCCcEEEeec
Confidence              678999999999999999998654  68999999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhcc-cccccccccccccccCCCCC
Q 028725          177 NLPLLAE-NAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~-~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |+++... .........||++|+|||..
T Consensus       487 Gla~~~~~~~~~~~~~~GT~~Y~APE~l  514 (674)
T 3pfq_A          487 GMCKENIWDGVTTKTFCGTPDYIAPEII  514 (674)
T ss_dssp             TTCEECCCTTCCBCCCCSCSSSCCHHHH
T ss_pred             ceeeccccCCcccccccCCCcccCHhhh
Confidence            9998533 33344557899999999964

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.98  E-value=6.5e-32  Score=208.08  Aligned_cols=170  Identities=16%  Similarity=0.295  Sum_probs=148.3

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC---------cCHHHHHHHHHHHhccC-CCcccccccce
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---------HSTRNFMHHIELISKLR-HCHLVSALGHC   89 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~---------~~~~~~~~e~~~l~~l~-~~~i~~~~~~~   89 (205)
                      ...++|++.+.||+|+||.||+|... +++.||+|+++....         ...+.+.+|+.+++.+. ||||+++.+.+
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~   93 (298)
T 1phk_A           14 GFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY   93 (298)
T ss_dssp             -CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             chhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee
Confidence            44688999999999999999999964 688999999975431         12345778999999996 99999999988


Q ss_pred             eeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC
Q 028725           90 FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL  169 (205)
Q Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~  169 (205)
                      ..       ....++|||++++++|.+++....  .+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++
T Consensus        94 ~~-------~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~  161 (298)
T 1phk_A           94 ET-------NTFFFLVFDLMKKGELFDYLTEKV--TLSEKETRKIMRALLEVICALHK---LNIVHRDLKPENILLDDDM  161 (298)
T ss_dssp             EC-------SSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTC
T ss_pred             cc-------CCeEEEEEeccCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEEcCCC
Confidence            65       678999999999999999997643  68999999999999999999999   7999999999999999999


Q ss_pred             ceeEcCCCchhhcccccccccccccccccCCCC
Q 028725          170 VAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       170 ~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      .++|+|||++.............++..|+|||.
T Consensus       162 ~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~  194 (298)
T 1phk_A          162 NIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEI  194 (298)
T ss_dssp             CEEECCCTTCEECCTTCCBCCCCSCGGGCCHHH
T ss_pred             cEEEecccchhhcCCCcccccccCCccccCHHH
Confidence            999999999987776666666789999999995

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.98  E-value=2.4e-32  Score=214.63  Aligned_cols=177  Identities=15%  Similarity=0.173  Sum_probs=144.3

Q ss_pred             HHHHHHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc-----CCcCHHHHHHHHHHHhccCCCccccccccee
Q 028725           17 EELEEATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK-----KSHSTRNFMHHIELISKLRHCHLVSALGHCF   90 (205)
Q Consensus        17 ~~~~~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~-----~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~   90 (205)
                      .++....++|++.+.||+|+||.||+|.. .+++.||+|++...     .....+.+.+|+.+++.++||||+++++++.
T Consensus        19 ~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~   98 (345)
T 3hko_A           19 GSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYE   98 (345)
T ss_dssp             BCHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             chhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhc
Confidence            34566789999999999999999999995 46889999998654     2345678899999999999999999999986


Q ss_pred             eecccCCCCCeEEEEEeecCCCcHHHhhccCC--------------------------------------CCCCCHHHHH
Q 028725           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA--------------------------------------WQSLTWTQRI  132 (205)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--------------------------------------~~~~~~~~~~  132 (205)
                      +       ....++||||+++++|.+++....                                      ...+++..++
T Consensus        99 ~-------~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (345)
T 3hko_A           99 D-------EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLIS  171 (345)
T ss_dssp             C-------SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHH
T ss_pred             c-------CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHH
Confidence            6       678999999999999999985210                                      1124677788


Q ss_pred             HHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC--ceeEcCCCchhhccccc-----ccccccccccccCCCCC
Q 028725          133 SAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL--VAKISSYNLPLLAENAE-----KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       133 ~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~--~~~l~Dfg~a~~~~~~~-----~~~~~~~~~~~~aPE~~  203 (205)
                      .++.|++.||.|||+   .+++||||||+||+++.++  .++|+|||++.......     ......+|..|+|||..
T Consensus       172 ~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  246 (345)
T 3hko_A          172 NIMRQIFSALHYLHN---QGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVL  246 (345)
T ss_dssp             HHHHHHHHHHHHHHH---TTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHH
T ss_pred             HHHHHHHHHHHHHHH---CCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhh
Confidence            899999999999999   7999999999999998766  89999999997654322     23345899999999964

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.98  E-value=5.5e-32  Score=211.41  Aligned_cols=165  Identities=17%  Similarity=0.202  Sum_probs=126.3

Q ss_pred             cCCCc---ceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccC-CCcccccccceeeecccCCC
Q 028725           24 NNFDT---SAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        24 ~~y~~---~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ++|++   .+.||+|+||.||+|... +++.||+|++...   ....+.+|+..++.+. ||||+++++++.+       
T Consensus         8 ~~y~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~-------   77 (325)
T 3kn6_A            8 QHYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHD-------   77 (325)
T ss_dssp             HHEEECTTSCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-------
T ss_pred             hccccccCCCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEc-------
Confidence            34544   478999999999999964 6899999999643   4456778999999997 9999999999876       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC---ceeEcC
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL---VAKISS  175 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~---~~~l~D  175 (205)
                      ....++|||++++++|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||+++.++   .++|+|
T Consensus        78 ~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~kl~D  152 (325)
T 3kn6_A           78 QLHTFLVMELLNGGELFERIKKKK--HFSETEASYIMRKLVSAVSHMHD---VGVVHRDLKPENLLFTDENDNLEIKIID  152 (325)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEC----CEEEECC
T ss_pred             CCEEEEEEEccCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCCeecCCCHHHEEEecCCCcccEEEec
Confidence            678999999999999999998764  78999999999999999999999   7999999999999998665   899999


Q ss_pred             CCchhhccccc-ccccccccccccCCCCC
Q 028725          176 YNLPLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ||+++...... ......+|..|+|||..
T Consensus       153 fg~a~~~~~~~~~~~~~~~t~~y~aPE~~  181 (325)
T 3kn6_A          153 FGFARLKPPDNQPLKTPCFTLHYAAPELL  181 (325)
T ss_dssp             CTTCEECCC--------------------
T ss_pred             cccceecCCCCCcccccCCCcCccCHHHh
Confidence            99998665433 33445789999999975

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.98  E-value=4.1e-32  Score=216.80  Aligned_cols=171  Identities=17%  Similarity=0.307  Sum_probs=134.5

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc--CCcCHHHHHHHHHHHhccC-CCcccccccceeeecccC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK--KSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDD   96 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~   96 (205)
                      ...++|++.+.||+|+||.||+|.. .+++.||+|++...  .......+.+|+.+++.+. ||||+++++++..     
T Consensus         6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~-----   80 (388)
T 3oz6_A            6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRA-----   80 (388)
T ss_dssp             HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----
T ss_pred             cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEec-----
Confidence            3468999999999999999999995 46899999998644  2334566788999999997 9999999998864     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                      .....+++||||+. ++|.+++...   .+++.....++.|++.||.|||+   .+|+||||||+||+++.++.++|+||
T Consensus        81 ~~~~~~~lv~e~~~-~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DF  153 (388)
T 3oz6_A           81 DNDRDVYLVFDYME-TDLHAVIRAN---ILEPVHKQYVVYQLIKVIKYLHS---GGLLHRDMKPSNILLNAECHVKVADF  153 (388)
T ss_dssp             TTSSCEEEEEECCS-EEHHHHHHHT---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCC
T ss_pred             CCCCEEEEEecccC-cCHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHeEEcCCCCEEecCC
Confidence            23457899999997 5999988763   68889999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhcccc----------------------cccccccccccccCCCCC
Q 028725          177 NLPLLAENA----------------------EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~----------------------~~~~~~~~~~~~~aPE~~  203 (205)
                      |+|+.....                      .......+|++|+|||..
T Consensus       154 G~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  202 (388)
T 3oz6_A          154 GLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEIL  202 (388)
T ss_dssp             TTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccCCcccCCcCCHHHh
Confidence            999765331                      122335899999999953

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.98  E-value=3.4e-32  Score=214.47  Aligned_cols=166  Identities=19%  Similarity=0.346  Sum_probs=142.5

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCc---CHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSH---STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .+.|+..+.||+|+||.||+|.. .+++.||+|++......   ..+.+.+|+.+++.++||||+++.+++..       
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-------  125 (348)
T 1u5q_A           53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR-------  125 (348)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-------
T ss_pred             hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-------
Confidence            35589999999999999999995 57899999999755322   23568899999999999999999998876       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      .+..++||||+. |++.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+
T Consensus       126 ~~~~~lv~e~~~-g~l~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~  200 (348)
T 1u5q_A          126 EHTAWLVMEYCL-GSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGS  200 (348)
T ss_dssp             TTEEEEEEECCS-EEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTEEEECCCTT
T ss_pred             CCeEEEEEecCC-CCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEeeccC
Confidence            678999999997 58888875432 478999999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +......   ....+|..|+|||..
T Consensus       201 a~~~~~~---~~~~gt~~y~aPE~~  222 (348)
T 1u5q_A          201 ASIMAPA---NSFVGTPYWMAPEVI  222 (348)
T ss_dssp             CBSSSSB---CCCCSCGGGCCHHHH
T ss_pred             ceecCCC---CcccCCcceeCHhhh
Confidence            9876543   335899999999953

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.98  E-value=2.8e-32  Score=212.71  Aligned_cols=188  Identities=18%  Similarity=0.338  Sum_probs=148.1

Q ss_pred             ccccCHHHHHHHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhcc-CCCcccccccc
Q 028725           11 YRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGH   88 (205)
Q Consensus        11 ~~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~   88 (205)
                      ...+++.++....++|++.+.||+|+||.||+|.. .+++.||+|++... ......+.+|+.+++.+ +||||+++++.
T Consensus        11 ~~~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~h~~i~~~~~~   89 (326)
T 2x7f_A           11 LDEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT-GDEEEEIKQEINMLKKYSHHRNIATYYGA   89 (326)
T ss_dssp             -----CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-SSTTHHHHHHHHHHHHHCCSTTBCCEEEE
T ss_pred             chhccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecC-cccHHHHHHHHHHHHhccCCCCeeeeeeE
Confidence            34555566667788999999999999999999996 46899999999754 34456788999999998 79999999998


Q ss_pred             eeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC
Q 028725           89 CFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN  168 (205)
Q Consensus        89 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~  168 (205)
                      +...... ......+++||++++++|.+++.......+++..++.++.|++.||.|||+   .+++|+||||+||+++.+
T Consensus        90 ~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~  165 (326)
T 2x7f_A           90 FIKKNPP-GMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQ---HKVIHRDIKGQNVLLTEN  165 (326)
T ss_dssp             EEECC---CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTT
T ss_pred             EeeccCc-cccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCcHHHEEEcCC
Confidence            8763211 114578999999999999999986654578999999999999999999999   799999999999999999


Q ss_pred             CceeEcCCCchhhccccc-ccccccccccccCCCCC
Q 028725          169 LVAKISSYNLPLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       169 ~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      +.++|+|||++....... ......++..|+|||..
T Consensus       166 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  201 (326)
T 2x7f_A          166 AEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVI  201 (326)
T ss_dssp             CCEEECCCTTTC-------------CCGGGCCHHHH
T ss_pred             CCEEEeeCcCceecCcCccccccccCCccccChhhh
Confidence            999999999998765432 33445799999999964

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.98  E-value=1.3e-31  Score=207.84  Aligned_cols=171  Identities=11%  Similarity=0.216  Sum_probs=139.4

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcC---HHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHS---TRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~---~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      ...++|++.+.||+|+||.||+|... +++.||+|++.......   .+.+.+|+.+++.++||||+++.+++..     
T Consensus        31 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~-----  105 (309)
T 2h34_A           31 TQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEI-----  105 (309)
T ss_dssp             ---CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----
T ss_pred             cEeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEee-----
Confidence            44688999999999999999999964 68899999997553322   4678899999999999999999998876     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                        .+..++++|++++++|.+++....  .+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+||
T Consensus       106 --~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~NIl~~~~~~~kl~Df  178 (309)
T 2h34_A          106 --DGQLYVDMRLINGVDLAAMLRRQG--PLAPPRAVAIVRQIGSALDAAHA---AGATHRDVKPENILVSADDFAYLVDF  178 (309)
T ss_dssp             --TTEEEEEEECCCCEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSC
T ss_pred             --CCeEEEEEEecCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CcCCcCCCChHHEEEcCCCCEEEecC
Confidence              668999999999999999998653  68999999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhccccc--ccccccccccccCCCCC
Q 028725          177 NLPLLAENAE--KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~--~~~~~~~~~~~~aPE~~  203 (205)
                      |++.......  ......++..|+|||..
T Consensus       179 g~~~~~~~~~~~~~~~~~~~~~y~aPE~~  207 (309)
T 2h34_A          179 GIASATTDEKLTQLGNTVGTLYYMAPERF  207 (309)
T ss_dssp             CC----------------CCGGGCCGGGT
T ss_pred             ccCccccccccccccccCCCcCccCHHHH
Confidence            9997665532  22345789999999975

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.98  E-value=1.5e-31  Score=208.94  Aligned_cols=170  Identities=27%  Similarity=0.424  Sum_probs=141.2

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEE--EEEEeccc-CCcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFI--AIRCLKMK-KSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~v--aiK~~~~~-~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .++|++.+.||+|+||.||+|... ++..+  ++|.++.. .......+.+|+.+++.+ +||||+++++++.+      
T Consensus        24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~------   97 (327)
T 1fvr_A           24 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH------   97 (327)
T ss_dssp             GGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEE------
T ss_pred             HHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeee------
Confidence            478999999999999999999954 56644  89988653 344566788999999999 89999999999876      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccE
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHA--------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDI  163 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~--------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~ni  163 (205)
                       .+..+++||++++++|.+++....              ...+++..++.++.|++.||.|||+   .+++||||||+||
T Consensus        98 -~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NI  173 (327)
T 1fvr_A           98 -RGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNI  173 (327)
T ss_dssp             -TTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGE
T ss_pred             -CCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCccceE
Confidence             678999999999999999997542              2468999999999999999999999   7999999999999


Q ss_pred             EeCCCCceeEcCCCchhhcccccccccccccccccCCCC
Q 028725          164 LLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       164 lv~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      +++.++.++|+|||+++............++..|+|||.
T Consensus       174 l~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~  212 (327)
T 1fvr_A          174 LVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIES  212 (327)
T ss_dssp             EECGGGCEEECCTTCEESSCEECCC----CCTTTCCHHH
T ss_pred             EEcCCCeEEEcccCcCccccccccccCCCCCccccChhh
Confidence            999999999999999976555444455577889999995

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.98  E-value=7.8e-32  Score=207.43  Aligned_cols=170  Identities=19%  Similarity=0.264  Sum_probs=146.9

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC---cCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ..++|.+.+.||+|+||.||+|... +++.+|+|++.....   ...+.+.+|+.+++.++||||+++.+++.+      
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------   86 (294)
T 2rku_A           13 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFED------   86 (294)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC------
T ss_pred             cccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeecc------
Confidence            3578999999999999999999965 588999999865532   234667889999999999999999998865      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ....+++||++++++|.+++....  .+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||
T Consensus        87 -~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg  160 (294)
T 2rku_A           87 -NDFVFVVLELCRRRSLLELHKRRK--ALTEPEARYYLRQIVLGCQYLHR---NRVIHRDLKLGNLFLNEDLEVKIGDFG  160 (294)
T ss_dssp             -SSEEEEEEECCTTCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCT
T ss_pred             -CCEEEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEcCCCCEEEEecc
Confidence             668999999999999999887643  68899999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccc-cccccccccccccCCCCC
Q 028725          178 LPLLAENA-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~-~~~~~~~~~~~~~aPE~~  203 (205)
                      ++...... .......++..|+|||..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~y~aPE~~  187 (294)
T 2rku_A          161 LATKVEYDGERKKVLCGTPNYIAPEVL  187 (294)
T ss_dssp             TCEECCSTTCCBCCCCSCCSSCCHHHH
T ss_pred             CceecccCccccccccCCCCcCCcchh
Confidence            99766533 233446899999999964

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.98  E-value=2.3e-32  Score=216.92  Aligned_cols=170  Identities=22%  Similarity=0.322  Sum_probs=141.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      .++|++.+.||+|+||.||+|.+.      ++..||+|+++... ......+.+|+.+++.++||||+++++++.+    
T Consensus        70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~----  145 (367)
T 3l9p_A           70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQ----  145 (367)
T ss_dssp             GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred             HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEec----
Confidence            467999999999999999999943      36789999996442 3344568889999999999999999998865    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCC-----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC-
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHA-----WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-  169 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~-----~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~-  169 (205)
                         ....++||||+++++|.+++....     ...+++..++.++.|++.||.|||+   .+|+||||||+||+++.++ 
T Consensus       146 ---~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~  219 (367)
T 3l9p_A          146 ---SLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE---NHFIHRDIAARNCLLTCPGP  219 (367)
T ss_dssp             ---SSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSST
T ss_pred             ---CCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChhhEEEecCCC
Confidence               567799999999999999987432     1358899999999999999999999   7999999999999999554 


Q ss_pred             --ceeEcCCCchhhccccc---ccccccccccccCCCC
Q 028725          170 --VAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  202 (205)
Q Consensus       170 --~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~  202 (205)
                        .++|+|||+++......   ......+|..|+|||.
T Consensus       220 ~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~  257 (367)
T 3l9p_A          220 GRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEA  257 (367)
T ss_dssp             TCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHH
T ss_pred             CceEEECCCccccccccccccccCCCcCCcccEECHHH
Confidence              59999999998654432   2233577899999995

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.98  E-value=5.7e-32  Score=211.39  Aligned_cols=176  Identities=18%  Similarity=0.226  Sum_probs=145.6

Q ss_pred             HHHHHhcCCCcc-eeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccC-CCcccccccceeee
Q 028725           18 ELEEATNNFDTS-AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLR-HCHLVSALGHCFEC   92 (205)
Q Consensus        18 ~~~~~~~~y~~~-~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~   92 (205)
                      ......++|.+. +.||+|+||.||+|... +++.||+|+++...  ......+.+|+.++..+. ||||+++.+++.. 
T Consensus        22 ~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~-  100 (327)
T 3lm5_A           22 SMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYEN-  100 (327)
T ss_dssp             CHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-
T ss_pred             HHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEe-
Confidence            344556778887 89999999999999954 68999999997653  334677889999999985 6999999998865 


Q ss_pred             cccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC---CC
Q 028725           93 YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---NL  169 (205)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~---~~  169 (205)
                            ....++||||+.+++|.+++.......+++..++.++.|++.||.|||+   .+++||||||+||+++.   ++
T Consensus       101 ------~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~---~givH~Dikp~NIl~~~~~~~~  171 (327)
T 3lm5_A          101 ------TSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQ---NNIVHLDLKPQNILLSSIYPLG  171 (327)
T ss_dssp             ------SSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESCBTTBC
T ss_pred             ------CCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH---CCeecCcCChHHEEEecCCCCC
Confidence                  6789999999999999999876655679999999999999999999999   79999999999999997   78


Q ss_pred             ceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          170 VAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       170 ~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      .++|+|||+++............+|..|+|||..
T Consensus       172 ~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~  205 (327)
T 3lm5_A          172 DIKIVDFGMSRKIGHACELREIMGTPEYLAPEIL  205 (327)
T ss_dssp             CEEECCGGGCEEC---------CCCGGGCCHHHH
T ss_pred             cEEEeeCccccccCCccccccccCCcCccCCeee
Confidence            9999999999887766665667899999999964

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.98  E-value=8.7e-32  Score=210.19  Aligned_cols=171  Identities=20%  Similarity=0.397  Sum_probs=145.2

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-----cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-----KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .++|++.+.||+|+||.||+|.+     .+++.||+|++........+.+.+|+.+++.++||||+++.+++..     .
T Consensus        40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~  114 (326)
T 2w1i_A           40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYS-----A  114 (326)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC------
T ss_pred             HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEe-----c
Confidence            46699999999999999999984     3588999999986666667789999999999999999999998765     2


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                      .....++|+|++++++|.+++.... ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||
T Consensus       115 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dikp~NIli~~~~~~kL~Dfg  190 (326)
T 2w1i_A          115 GRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFG  190 (326)
T ss_dssp             ---CCEEEECCCTTCBHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCCT
T ss_pred             CCCceEEEEECCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHh---CCEeccCCCcceEEEcCCCcEEEecCc
Confidence            2346899999999999999998653 468999999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccc----cccccccccccCCCC
Q 028725          178 LPLLAENAEK----VGHVTPYSGSINPTN  202 (205)
Q Consensus       178 ~a~~~~~~~~----~~~~~~~~~~~aPE~  202 (205)
                      ++........    .....++..|+|||.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  219 (326)
T 2w1i_A          191 LTKVLPQDKEYYKVKEPGESPIFWYAPES  219 (326)
T ss_dssp             TCEECCSSCSEEECSSCCSCCGGGCCHHH
T ss_pred             chhhccccccccccccCCCCceeEECchh
Confidence            9987665432    223467778999996

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.98  E-value=7.4e-32  Score=211.41  Aligned_cols=170  Identities=19%  Similarity=0.269  Sum_probs=146.9

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ..++|.+.+.||+|+||.||++... +++.+++|++....   ....+.+.+|+.+++.++||||+++++++.+      
T Consensus        39 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~------  112 (335)
T 2owb_A           39 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFED------  112 (335)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC------
T ss_pred             cCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec------
Confidence            3578999999999999999999964 58899999997553   2335668889999999999999999998876      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ....+++|||+.+++|.+++....  .+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||
T Consensus       113 -~~~~~lv~e~~~~~~L~~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~Dfg  186 (335)
T 2owb_A          113 -NDFVFVVLELCRRRSLLELHKRRK--ALTEPEARYYLRQIVLGCQYLHR---NRVIHRDLKLGNLFLNEDLEVKIGDFG  186 (335)
T ss_dssp             -SSEEEEEECCCTTCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCT
T ss_pred             -CCeEEEEEecCCCCCHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHH---CCCEecCCCchhEEEcCCCCEEEeecc
Confidence             678999999999999999987643  68899999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccc-cccccccccccccCCCCC
Q 028725          178 LPLLAENA-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~-~~~~~~~~~~~~~aPE~~  203 (205)
                      ++...... .......+|..|+|||..
T Consensus       187 ~~~~~~~~~~~~~~~~gt~~y~aPE~~  213 (335)
T 2owb_A          187 LATKVEYDGERKKVLCGTPNYIAPEVL  213 (335)
T ss_dssp             TCEECCSTTCCBCCCCSCCSSCCHHHH
T ss_pred             CceecccCcccccccCCCccccCHHHh
Confidence            99866533 233446899999999963

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.98  E-value=4.8e-32  Score=209.17  Aligned_cols=172  Identities=16%  Similarity=0.357  Sum_probs=143.2

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ...++|++.+.||+|+||.||+|... +++.+++|++..........+.+|+.+++.++||||+++++.+..       .
T Consensus        16 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~   88 (302)
T 2j7t_A           16 DPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYH-------D   88 (302)
T ss_dssp             CGGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-------C
T ss_pred             CCccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeee-------C
Confidence            34678999999999999999999965 588999999987767778889999999999999999999998876       5


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +..++++|++++++|.+++.... ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++
T Consensus        89 ~~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  164 (302)
T 2j7t_A           89 GKLWIMIEFCPGGAVDAIMLELD-RGLTEPQIQVVCRQMLEALNFLHS---KRIIHRDLKAGNVLMTLEGDIRLADFGVS  164 (302)
T ss_dssp             -CEEEEEECCTTEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTSCEEECCCHHH
T ss_pred             CeEEEEEEeCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHHHEEECCCCCEEEEECCCC
Confidence            67999999999999999886532 368999999999999999999999   79999999999999999999999999998


Q ss_pred             hhcccc-cccccccccccccCCCCC
Q 028725          180 LLAENA-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~-~~~~~~~~~~~~~aPE~~  203 (205)
                      ...... .......++..|+|||..
T Consensus       165 ~~~~~~~~~~~~~~~~~~y~aPE~~  189 (302)
T 2j7t_A          165 AKNLKTLQKRDSFIGTPYWMAPEVV  189 (302)
T ss_dssp             HHHHHHHHC-----CCGGGCCHHHH
T ss_pred             ccccccccccccccCChhhcCCeee
Confidence            644332 233445899999999953

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.97  E-value=1.6e-32  Score=227.52  Aligned_cols=175  Identities=24%  Similarity=0.399  Sum_probs=148.7

Q ss_pred             HHHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           16 LEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        16 ~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      .+.|....++|++.+.||+|+||.||+|.+.++..||+|+++... ...+.+.+|+.+++.++||||+++++++.+    
T Consensus       259 ~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~----  333 (535)
T 2h8h_A          259 KDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE----  333 (535)
T ss_dssp             TTCSBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred             ccceecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee----
Confidence            344555668899999999999999999998877889999997543 446789999999999999999999988743    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                          ...++||||+.+++|.+++....+..+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.++|+|
T Consensus       334 ----~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~D  406 (535)
T 2h8h_A          334 ----EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVAD  406 (535)
T ss_dssp             ----SSCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECC
T ss_pred             ----ccceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHhhEEEcCCCcEEEcc
Confidence                458999999999999999975433468899999999999999999999   7999999999999999999999999


Q ss_pred             CCchhhccccc--ccccccccccccCCCC
Q 028725          176 YNLPLLAENAE--KVGHVTPYSGSINPTN  202 (205)
Q Consensus       176 fg~a~~~~~~~--~~~~~~~~~~~~aPE~  202 (205)
                      ||+++......  ......++..|+|||.
T Consensus       407 FG~a~~~~~~~~~~~~~~~~~~~y~aPE~  435 (535)
T 2h8h_A          407 FGLARLIEDNEYTARQGAKFPIKWTAPEA  435 (535)
T ss_dssp             TTSTTTCCCHHHHTTCSTTSCGGGSCHHH
T ss_pred             cccceecCCCceecccCCcCcccccCHHH
Confidence            99998776432  1222356788999995

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.97  E-value=3.9e-32  Score=210.59  Aligned_cols=174  Identities=22%  Similarity=0.344  Sum_probs=146.5

Q ss_pred             HHHHhcCCCcceeeccCcceEEEEEEe------cCCcEEEEEEecccCC-cCHHHHHHHHHHHhcc-CCCccccccccee
Q 028725           19 LEEATNNFDTSAFMGEGSKGQMYRGRL------KNGTFIAIRCLKMKKS-HSTRNFMHHIELISKL-RHCHLVSALGHCF   90 (205)
Q Consensus        19 ~~~~~~~y~~~~~lg~g~~g~V~~~~~------~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~   90 (205)
                      +....++|++.+.||+|+||.||+|..      .+++.||+|+++.... ...+.+.+|+.+++.+ +||||+++.+.+.
T Consensus        18 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~   97 (313)
T 1t46_A           18 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT   97 (313)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEe
Confidence            334458899999999999999999984      2467899999975532 3456788999999999 8999999999886


Q ss_pred             eecccCCCCCeEEEEEeecCCCcHHHhhccCCC----------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCcee
Q 028725           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAW----------------QSLTWTQRISAAIGVARGIQFLHTGIVPGVF  154 (205)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~----------------~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~  154 (205)
                      .       .+..+++||++++++|.+++.....                ..+++..++.++.|++.||.|||+   .+++
T Consensus        98 ~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~  167 (313)
T 1t46_A           98 I-------GGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNCI  167 (313)
T ss_dssp             S-------SSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCC
T ss_pred             c-------CCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHH---CCee
Confidence            5       5678999999999999999875432                248999999999999999999999   7999


Q ss_pred             ecCCccccEEeCCCCceeEcCCCchhhcccccc---cccccccccccCCCC
Q 028725          155 SNNLKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTN  202 (205)
Q Consensus       155 h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~  202 (205)
                      ||||||+||+++.++.++|+|||++........   .....++..|+|||.
T Consensus       168 H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  218 (313)
T 1t46_A          168 HRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPES  218 (313)
T ss_dssp             CSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHH
T ss_pred             cCCCccceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHH
Confidence            999999999999999999999999987665432   223466788999995

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.97  E-value=1e-31  Score=208.83  Aligned_cols=176  Identities=16%  Similarity=0.177  Sum_probs=145.6

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ..++|++.+.||+|+||.||++.. .+++.||+|++........+.+.+|+.+++.++||||+++++++....   ....
T Consensus        27 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---~~~~  103 (317)
T 2buj_A           27 DNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRER---GAKH  103 (317)
T ss_dssp             TTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEE---TTEE
T ss_pred             CCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEecc---CCCc
Confidence            357899999999999999999995 568999999997665556678889999999999999999999886421   1245


Q ss_pred             eEEEEEeecCCCcHHHhhccC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725          101 RIFLIFEYVPNGTLRSWISGH--AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ..++++|++.+++|.+++...  ....+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+
T Consensus       104 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~dfg~  180 (317)
T 2buj_A          104 EAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA---KGYAHRDLKPTNILLGDEGQPVLMDLGS  180 (317)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCSS
T ss_pred             eeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEcCCCCEEEEecCc
Confidence            789999999999999998742  23478999999999999999999999   7999999999999999999999999998


Q ss_pred             hhhcccccc----------cccccccccccCCCCC
Q 028725          179 PLLAENAEK----------VGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~----------~~~~~~~~~~~aPE~~  203 (205)
                      +........          .....+|..|+|||..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  215 (317)
T 2buj_A          181 MNQACIHVEGSRQALTLQDWAAQRCTISYRAPELF  215 (317)
T ss_dssp             CEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGS
T ss_pred             chhcccccccccccccccccccccCCcccCCHhHh
Confidence            865543211          1224679999999975

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.97  E-value=9.5e-32  Score=211.45  Aligned_cols=168  Identities=14%  Similarity=0.254  Sum_probs=140.3

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCC--cCHHHHHHHHHHHhccCC--CcccccccceeeecccCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRH--CHLVSALGHCFECYFDDS   97 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~--~~i~~~~~~~~~~~~~~~   97 (205)
                      ..++|++.+.||+|+||.||++...+++.||+|++.....  ...+.+.+|+.++..++|  |||+++++++..      
T Consensus         7 ~~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~------   80 (343)
T 3dbq_A            7 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT------   80 (343)
T ss_dssp             SSCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC------
T ss_pred             ecCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEee------
Confidence            3567999999999999999999988899999999975532  334678899999999986  999999998876      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ....++||| +.+++|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||+++ ++.++|+|||
T Consensus        81 -~~~~~lv~e-~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~al~~lH~---~~iiHrDikp~NIll~-~~~~kl~DFG  152 (343)
T 3dbq_A           81 -DQYIYMVME-CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIV-DGMLKLIDFG  152 (343)
T ss_dssp             -SSEEEEEEC-CCSEEHHHHHHHSC--CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEE-TTEEEECCCS
T ss_pred             -CCEEEEEEe-CCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCcceEEEE-CCcEEEeecc
Confidence             678999999 55789999998754  78899999999999999999999   7999999999999997 5789999999


Q ss_pred             chhhcccccc---cccccccccccCCCCC
Q 028725          178 LPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      +++.......   .....||+.|+|||..
T Consensus       153 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~  181 (343)
T 3dbq_A          153 IANQMQPDTTSVVKDSQVGTVNYMPPEAI  181 (343)
T ss_dssp             SSCCC------------CCCCSSCCHHHH
T ss_pred             cccccCcccccccCCCCcCCcCcCCHHHH
Confidence            9987654432   2345899999999963

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.97  E-value=2.1e-32  Score=209.46  Aligned_cols=171  Identities=18%  Similarity=0.296  Sum_probs=133.2

Q ss_pred             HHHhcCCCcceeeccCcceEEEEEEecC----CcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecc
Q 028725           20 EEATNNFDTSAFMGEGSKGQMYRGRLKN----GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (205)
Q Consensus        20 ~~~~~~y~~~~~lg~g~~g~V~~~~~~~----~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   94 (205)
                      ....++|++.+.||+|+||.||+|....    +..|++|+++... ....+.+.+|+..++.++||||+++++++.    
T Consensus        11 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~----   86 (281)
T 1mp8_A           11 EIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT----   86 (281)
T ss_dssp             BCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC----
T ss_pred             EEehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc----
Confidence            3456889999999999999999999642    4579999987543 233567889999999999999999998763    


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEc
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  174 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~  174 (205)
                          .+..++|||++++++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+
T Consensus        87 ----~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~  158 (281)
T 1mp8_A           87 ----ENPVWIIMELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLG  158 (281)
T ss_dssp             ----SSSCEEEEECCTTEEHHHHHHHTT-TTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEEC
T ss_pred             ----cCccEEEEecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeecccccHHHEEECCCCCEEEC
Confidence                346789999999999999997543 468999999999999999999999   799999999999999999999999


Q ss_pred             CCCchhhcccccc--cccccccccccCCCC
Q 028725          175 SYNLPLLAENAEK--VGHVTPYSGSINPTN  202 (205)
Q Consensus       175 Dfg~a~~~~~~~~--~~~~~~~~~~~aPE~  202 (205)
                      |||+++.......  .....++..|+|||.
T Consensus       159 Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~  188 (281)
T 1mp8_A          159 DFGLSRYMEDSTYYKASKGKLPIKWMAPES  188 (281)
T ss_dssp             C-------------------CCGGGCCHHH
T ss_pred             ccccccccCcccccccccCCCcccccChhh
Confidence            9999987765432  223466788999995

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=6.1e-32  Score=212.78  Aligned_cols=172  Identities=22%  Similarity=0.358  Sum_probs=138.4

Q ss_pred             HHHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCc-----CHHHHHHHHHHHhccCCCcccccccceeeec
Q 028725           20 EEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH-----STRNFMHHIELISKLRHCHLVSALGHCFECY   93 (205)
Q Consensus        20 ~~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~-----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   93 (205)
                      ....++|++.+.||+|+||.||+|... +|+.||+|++......     ....+.+|+.+++.++||||+++++++.+  
T Consensus         6 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~--   83 (346)
T 1ua2_A            6 KSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGH--   83 (346)
T ss_dssp             -------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECC--
T ss_pred             HHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEee--
Confidence            345688999999999999999999954 6899999999754321     23467889999999999999999998865  


Q ss_pred             ccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeE
Q 028725           94 FDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  173 (205)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l  173 (205)
                           ....++|||++.+ +|.+.+.... ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|
T Consensus        84 -----~~~~~lv~e~~~~-~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~kl  153 (346)
T 1ua2_A           84 -----KSNISLVFDFMET-DLEVIIKDNS-LVLTPSHIKAYMLMTLQGLEYLHQ---HWILHRDLKPNNLLLDENGVLKL  153 (346)
T ss_dssp             -----TTCCEEEEECCSE-EHHHHHTTCC-SSCCSSHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEE
T ss_pred             -----CCceEEEEEcCCC-CHHHHHHhcC-cCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEEcCCCCEEE
Confidence                 5678999999976 8988887543 468888899999999999999999   79999999999999999999999


Q ss_pred             cCCCchhhccccc-ccccccccccccCCCCC
Q 028725          174 SSYNLPLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       174 ~Dfg~a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      +|||+++...... ......+|..|+|||..
T Consensus       154 ~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~  184 (346)
T 1ua2_A          154 ADFGLAKSFGSPNRAYTHQVVTRWYRAPELL  184 (346)
T ss_dssp             CCCGGGSTTTSCCCCCCCSCCCCTTCCHHHH
T ss_pred             EecccceeccCCcccCCcccccccccCchHh
Confidence            9999998765433 33446889999999963

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.97  E-value=2.4e-31  Score=207.78  Aligned_cols=165  Identities=13%  Similarity=0.228  Sum_probs=144.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccC-CCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|++.+.||+|+||.||+|.. .+++.||+|+++.   ...+.+.+|+.+++.++ ||||+++.+++.+     +...
T Consensus        35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~-----~~~~  106 (330)
T 3nsz_A           35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP---VKKKKIKREIKILENLRGGPNIITLADIVKD-----PVSR  106 (330)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS---CCHHHHHHHHHHHHHHTTSTTBCCEEEEEEC-----TTTC
T ss_pred             CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc---cchHHHHHHHHHHHHcCCCCCEEEeeeeecc-----CCCC
Confidence            46799999999999999999995 5689999999963   34577889999999997 9999999998765     3356


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC-ceeEcCCCch
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-VAKISSYNLP  179 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~-~~~l~Dfg~a  179 (205)
                      ..+++||++.+++|.+++.     .+++..+..++.|++.||.|||+   .+++||||||+||+++.++ .++|+|||++
T Consensus       107 ~~~lv~e~~~~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a  178 (330)
T 3nsz_A          107 TPALVFEHVNNTDFKQLYQ-----TLTDYDIRFYMYEILKALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGLA  178 (330)
T ss_dssp             CEEEEEECCCCCCHHHHGG-----GCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEEEECCCTTC
T ss_pred             ceEEEEeccCchhHHHHHH-----hCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEEcCCCCEEEEEeCCCc
Confidence            7899999999999999885     37788999999999999999999   7999999999999999776 8999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +............++..|+|||..
T Consensus       179 ~~~~~~~~~~~~~~~~~y~aPE~~  202 (330)
T 3nsz_A          179 EFYHPGQEYNVRVASRYFKGPELL  202 (330)
T ss_dssp             EECCTTCCCCSCCSCGGGCCHHHH
T ss_pred             eEcCCCCccccccccccccChhhh
Confidence            877766666667899999999963

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.97  E-value=2.3e-31  Score=204.07  Aligned_cols=166  Identities=22%  Similarity=0.428  Sum_probs=141.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcC-------HHHHHHHHHHHhccCCCcccccccceeeecc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHS-------TRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~-------~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   94 (205)
                      .++|++.+.||+|+||.||+|.. .+++.||+|++.......       .+.+.+|+.+++.++||||+++++++.+   
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---   94 (287)
T 4f0f_A           18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHN---   94 (287)
T ss_dssp             STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETT---
T ss_pred             hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecC---
Confidence            47899999999999999999996 468999999996543221       2678899999999999999999998743   


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCc--eeecCCccccEEeCCCCc--
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG--VFSNNLKITDILLDQNLV--  170 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~--i~h~dlkp~nilv~~~~~--  170 (205)
                            ..+++|||+++++|.+.+.... ..+++..++.++.|++.||.|||+   .+  ++|+||||+||+++.++.  
T Consensus        95 ------~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lH~---~~~~ivH~dikp~Nil~~~~~~~~  164 (287)
T 4f0f_A           95 ------PPRMVMEFVPCGDLYHRLLDKA-HPIKWSVKLRLMLDIALGIEYMQN---QNPPIVHRDLRSPNIFLQSLDENA  164 (287)
T ss_dssp             ------TTEEEEECCTTCBHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHT---SSSCCBCSCCSGGGEEESCCCTTC
T ss_pred             ------CCeEEEEecCCCCHHHHHhccc-CCccHHHHHHHHHHHHHHHHHHHh---CCCCeecCCCCcceEEEeccCCCC
Confidence                  2369999999999999887554 478999999999999999999999   68  999999999999987776  


Q ss_pred             ---eeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          171 ---AKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       171 ---~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                         ++|+|||+++.....  .....+|..|+|||..
T Consensus       165 ~~~~kl~Dfg~~~~~~~~--~~~~~g~~~y~aPE~~  198 (287)
T 4f0f_A          165 PVCAKVADFGLSQQSVHS--VSGLLGNFQWMAPETI  198 (287)
T ss_dssp             SCCEEECCCTTCBCCSSC--EECCCCCCTTSCGGGS
T ss_pred             ceeEEeCCCCcccccccc--ccccCCCccccCchhh
Confidence               999999999755442  3335899999999975

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=3.1e-31  Score=207.52  Aligned_cols=171  Identities=18%  Similarity=0.318  Sum_probs=138.7

Q ss_pred             HHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhcc--CCCcccccccceeeecccCC
Q 028725           20 EEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKL--RHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        20 ~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l--~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ....++|++.+.||+|+||.||+|... ++.||+|++...   .......|.+++...  +||||+++++.+....   .
T Consensus        33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~---~  105 (337)
T 3mdy_A           33 RTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGT---G  105 (337)
T ss_dssp             TTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESC---G
T ss_pred             cccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCC---C
Confidence            344578999999999999999999975 899999998633   334445555555554  8999999999887621   1


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC--------ceeecCCccccEEeCCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP--------GVFSNNLKITDILLDQNL  169 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~--------~i~h~dlkp~nilv~~~~  169 (205)
                      .....+++|||+++++|.+++...   .+++..++.++.|++.||.|||+   .        +++||||||+||+++.++
T Consensus       106 ~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~---~~~~~~~~~~ivH~Dikp~Nill~~~~  179 (337)
T 3mdy_A          106 SWTQLYLITDYHENGSLYDYLKST---TLDAKSMLKLAYSSVSGLCHLHT---EIFSTQGKPAIAHRDLKSKNILVKKNG  179 (337)
T ss_dssp             GGCEEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHS---CBCSTTCBCCEECSCCCGGGEEECTTS
T ss_pred             CCCceEEEEeccCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHH---hhhhhccCCCEEecccchHHEEECCCC
Confidence            126789999999999999999764   58899999999999999999998   6        999999999999999999


Q ss_pred             ceeEcCCCchhhccccccc-----ccccccccccCCCCC
Q 028725          170 VAKISSYNLPLLAENAEKV-----GHVTPYSGSINPTNS  203 (205)
Q Consensus       170 ~~~l~Dfg~a~~~~~~~~~-----~~~~~~~~~~aPE~~  203 (205)
                      .++|+|||++.........     ....||..|+|||..
T Consensus       180 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  218 (337)
T 3mdy_A          180 TCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVL  218 (337)
T ss_dssp             CEEECCCTTCEECC---------CCSSCSCGGGCCHHHH
T ss_pred             CEEEEeCCCceeeccccccccCCCCCCccCcceeChhhc
Confidence            9999999999765543322     245899999999964

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.97  E-value=5.6e-32  Score=213.91  Aligned_cols=168  Identities=13%  Similarity=0.273  Sum_probs=144.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|++.+.||+|+||.||+|... ++..||+|++.... ......+.+|+.+++.++||||+++++.+..       .+
T Consensus        32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~  104 (360)
T 3eqc_A           32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-------DG  104 (360)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEE-------TT
T ss_pred             cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEE-------CC
Confidence            367999999999999999999965 68999999997653 2335678899999999999999999998876       67


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-ceeecCCccccEEeCCCCceeEcCCCch
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP-GVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~-~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ..++||||+++++|.+++....  .+++..+..++.|++.||.|||+   . +++|+||||+||+++.++.++|+|||++
T Consensus       105 ~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~~i~~~l~~lh~---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  179 (360)
T 3eqc_A          105 EISICMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLRE---KHKIMHRDVKPSNILVNSRGEIKLCDFGVS  179 (360)
T ss_dssp             EEEEEECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---HHCCCCSCCSGGGEEECTTCCEEECCCCCC
T ss_pred             EEEEEEECCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---hCCEEcCCccHHHEEECCCCCEEEEECCCC
Confidence            8999999999999999997654  68899999999999999999998   5 8999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ....... .....+|..|+|||..
T Consensus       180 ~~~~~~~-~~~~~gt~~y~aPE~~  202 (360)
T 3eqc_A          180 GQLIDSM-ANSFVGTRSYMSPERL  202 (360)
T ss_dssp             HHHHHHC-----CCCCTTCCHHHH
T ss_pred             ccccccc-ccCCCCCCCeECHHHH
Confidence            7665432 3345899999999964

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=1.6e-31  Score=213.16  Aligned_cols=176  Identities=16%  Similarity=0.222  Sum_probs=140.7

Q ss_pred             HHHHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeeccc--
Q 028725           19 LEEATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD--   95 (205)
Q Consensus        19 ~~~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~--   95 (205)
                      +....++|++.+.||+|+||.||+|.. .+|+.||+|++......    ..+|+.+++.++||||+++++++......  
T Consensus         2 l~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~----~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~   77 (383)
T 3eb0_A            2 LETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRY----KNRELDIMKVLDHVNIIKLVDYFYTTGDEEP   77 (383)
T ss_dssp             ----CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTS----CCHHHHHHTTCCCTTBCCEEEEEEEC-----
T ss_pred             CccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcch----HHHHHHHHHHcCCCCccchhheeeecCcccc
Confidence            345678999999999999999999995 57999999998644322    23699999999999999999988653211  


Q ss_pred             -----------------------------CCCCCeEEEEEeecCCCcHHHhhcc--CCCCCCCHHHHHHHHHHHHHHHHH
Q 028725           96 -----------------------------DSSVSRIFLIFEYVPNGTLRSWISG--HAWQSLTWTQRISAAIGVARGIQF  144 (205)
Q Consensus        96 -----------------------------~~~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~i~~~i~~~l~~  144 (205)
                                                   .......++||||+++ +|.+.+..  .....+++..++.++.|++.||.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~  156 (383)
T 3eb0_A           78 KPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGF  156 (383)
T ss_dssp             --------------------------------CCEEEEEECCCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccCCCceEEEEEEecCCc-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence                                         0234568899999975 87777652  222478999999999999999999


Q ss_pred             hhcCCCCceeecCCccccEEeC-CCCceeEcCCCchhhcccccccccccccccccCCCC
Q 028725          145 LHTGIVPGVFSNNLKITDILLD-QNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       145 lh~~~~~~i~h~dlkp~nilv~-~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      ||+   .+|+||||||+||+++ .++.++|+|||+++............+|..|+|||.
T Consensus       157 LH~---~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~  212 (383)
T 3eb0_A          157 IHS---LGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPEL  212 (383)
T ss_dssp             HHT---TTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHH
T ss_pred             HHH---CcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCcccCCCccCHHH
Confidence            999   7999999999999998 688999999999988777666666789999999995

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.97  E-value=7.3e-32  Score=210.82  Aligned_cols=168  Identities=19%  Similarity=0.361  Sum_probs=136.8

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCc----EEEEEEeccc-CCcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGT----FIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~----~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      .++|++.+.||+|+||.||+|.+. +++    +|++|.+... .......+.+|+.+++.++||||+++++++..     
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----   88 (327)
T 3poz_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT-----   88 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEES-----
T ss_pred             HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec-----
Confidence            477999999999999999999954 344    4578877543 34556788999999999999999999998865     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                         ...+++++++.+++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+||
T Consensus        89 ---~~~~~v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~NIll~~~~~~kl~Df  161 (327)
T 3poz_A           89 ---STVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDF  161 (327)
T ss_dssp             ---SSEEEEEECCTTCBHHHHHHHST-TSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCT
T ss_pred             ---CCeEEEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCChheEEECCCCCEEEccC
Confidence               34789999999999999987644 468999999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhccccccc---ccccccccccCCCC
Q 028725          177 NLPLLAENAEKV---GHVTPYSGSINPTN  202 (205)
Q Consensus       177 g~a~~~~~~~~~---~~~~~~~~~~aPE~  202 (205)
                      |+++........   ....+|..|+|||.
T Consensus       162 g~a~~~~~~~~~~~~~~~~~t~~y~aPE~  190 (327)
T 3poz_A          162 GLAKLLGAEEKEYHAEGGKVPIKWMALES  190 (327)
T ss_dssp             THHHHHTTTCC-------CCCGGGSCHHH
T ss_pred             cceeEccCCcccccccCCCccccccChHH
Confidence            999877654322   22356789999996

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.97  E-value=1.8e-31  Score=209.93  Aligned_cols=167  Identities=15%  Similarity=0.224  Sum_probs=140.8

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ...++|++.+.||+|+||.||+|... +++.||+|+++.....    ..+|++++..+ +||||+++.+++.+       
T Consensus        19 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~----~~~E~~~l~~~~~hp~iv~~~~~~~~-------   87 (342)
T 2qr7_A           19 QFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRD----PTEEIEILLRYGQHPNIITLKDVYDD-------   87 (342)
T ss_dssp             CHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCC----CHHHHHHHHHHTTSTTBCCEEEEEEC-------
T ss_pred             CccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCC----hHHHHHHHHHhcCCCCcCeEEEEEEc-------
Confidence            34678999999999999999999964 6889999999755432    34577778777 79999999998865       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC----CceeEc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN----LVAKIS  174 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~----~~~~l~  174 (205)
                      ....++||||+.+++|.+.+....  .+++..+..++.|++.||.|||+   .+++||||||+||++.+.    +.++|+
T Consensus        88 ~~~~~lv~E~~~gg~L~~~i~~~~--~~~~~~~~~~~~qi~~al~~lH~---~givHrDlkp~NIl~~~~~~~~~~~kl~  162 (342)
T 2qr7_A           88 GKYVYVVTELMKGGELLDKILRQK--FFSEREASAVLFTITKTVEYLHA---QGVVHRDLKPSNILYVDESGNPESIRIC  162 (342)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHTCT--TCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESSSSCSGGGEEEC
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCcEeccCCHHHEEEecCCCCcCeEEEE
Confidence            678999999999999999998654  68999999999999999999999   799999999999998533    359999


Q ss_pred             CCCchhhccccc-ccccccccccccCCCCC
Q 028725          175 SYNLPLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       175 Dfg~a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      |||++....... ......+|..|+|||..
T Consensus       163 Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~  192 (342)
T 2qr7_A          163 DFGFAKQLRAENGLLMTPCYTANFVAPEVL  192 (342)
T ss_dssp             CCTTCEECBCTTCCBCCSSCCSSCCCHHHH
T ss_pred             ECCCcccCcCCCCceeccCCCccccCHHHh
Confidence            999998665432 34456889999999963

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.97  E-value=7.6e-32  Score=210.13  Aligned_cols=168  Identities=17%  Similarity=0.261  Sum_probs=141.2

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC--------cCHHHHHHHHHHHhccCCCcccccccceeee
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--------HSTRNFMHHIELISKLRHCHLVSALGHCFEC   92 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~--------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   92 (205)
                      ..++|.+.+.||+|+||.||+|... +++.||+|++.....        .....+.+|+.+++.++||||+++.+++.. 
T Consensus         8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-   86 (322)
T 2ycf_A            8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA-   86 (322)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEES-
T ss_pred             hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcC-
Confidence            3578999999999999999999954 588999999965421        223457889999999999999999988743 


Q ss_pred             cccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc--
Q 028725           93 YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV--  170 (205)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~--  170 (205)
                             ...++|||++++++|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||+++.++.  
T Consensus        87 -------~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~~  154 (322)
T 2ycf_A           87 -------EDYYIVLELMEGGELFDKVVGNK--RLKEATCKLYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDC  154 (322)
T ss_dssp             -------SSEEEEEECCTTEETHHHHSTTC--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSSSC
T ss_pred             -------CceEEEEecCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEecCCCCC
Confidence                   34899999999999999887654  78999999999999999999999   79999999999999987654  


Q ss_pred             -eeEcCCCchhhcccccccccccccccccCCCC
Q 028725          171 -AKISSYNLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       171 -~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                       ++|+|||++.............+|..|+|||.
T Consensus       155 ~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~  187 (322)
T 2ycf_A          155 LIKITDFGHSKILGETSLMRTLCGTPTYLAPEV  187 (322)
T ss_dssp             CEEECCCTTCEECCCCHHHHHHHSCCTTCCHHH
T ss_pred             eEEEccCccceecccccccccccCCcCccCchh
Confidence             99999999987766554455689999999996

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.97  E-value=1.7e-31  Score=204.57  Aligned_cols=168  Identities=21%  Similarity=0.342  Sum_probs=146.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .++|++.+.||+|+||.||+|... ++..||+|++...   .......+.+|+.+++.++||||+++.+++.+       
T Consensus        13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------   85 (284)
T 2vgo_A           13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHD-------   85 (284)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-------
T ss_pred             hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEc-------
Confidence            478999999999999999999964 5788999999643   23445678899999999999999999998865       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....+++||++++++|.+++....  .+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||+
T Consensus        86 ~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~Dfg~  160 (284)
T 2vgo_A           86 RKRIYLMLEFAPRGELYKELQKHG--RFDEQRSATFMEELADALHYCHE---RKVIHRDIKPENLLMGYKGELKIADFGW  160 (284)
T ss_dssp             SSEEEEEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECTTCCEEECCCTT
T ss_pred             CCEEEEEEEeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEEcCCCCEEEecccc
Confidence            678999999999999999987653  68899999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +....... .....++..|+|||..
T Consensus       161 ~~~~~~~~-~~~~~~~~~y~aPE~~  184 (284)
T 2vgo_A          161 SVHAPSLR-RRTMCGTLDYLPPEMI  184 (284)
T ss_dssp             CEECSSSC-BCCCCSCGGGCCHHHH
T ss_pred             cccCcccc-cccccCCCCcCCHHHh
Confidence            87655432 3446899999999963

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.97  E-value=4.1e-31  Score=204.22  Aligned_cols=169  Identities=16%  Similarity=0.318  Sum_probs=148.0

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ....|++.+.||+|+||.||+|.. .+++.||+|++.... ......+.+|+.+++.++||||+++++.+..       .
T Consensus        20 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~   92 (303)
T 3a7i_A           20 PEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-------D   92 (303)
T ss_dssp             GGGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEE-------T
T ss_pred             hHHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec-------C
Confidence            346799999999999999999995 468899999997653 4456788999999999999999999998876       5


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...+++|||+++++|.+++...   .+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++
T Consensus        93 ~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~  166 (303)
T 3a7i_A           93 TKLWIIMEYLGGGSALDLLEPG---PLDETQIATILREILKGLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVA  166 (303)
T ss_dssp             TEEEEEEECCTTEEHHHHHTTS---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             CeEEEEEEeCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChheEEECCCCCEEEeecccc
Confidence            6899999999999999998753   68999999999999999999999   79999999999999999999999999999


Q ss_pred             hhccccc-ccccccccccccCCCCC
Q 028725          180 LLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ....... ......++..|+|||..
T Consensus       167 ~~~~~~~~~~~~~~~~~~y~aPE~~  191 (303)
T 3a7i_A          167 GQLTDTQIKRNTFVGTPFWMAPEVI  191 (303)
T ss_dssp             EECBTTBCCBCCCCSCGGGCCHHHH
T ss_pred             eecCccccccCccCCCcCccCHHHH
Confidence            7665543 33446899999999964

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.97  E-value=1.1e-31  Score=205.39  Aligned_cols=169  Identities=18%  Similarity=0.258  Sum_probs=143.4

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ..++|++.+.||+|+||.||+|... +++.||+|++....  ......+.+|+..+..+ +||||+++++++.+      
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~------   82 (289)
T 1x8b_A            9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAE------   82 (289)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEE------
T ss_pred             ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeec------
Confidence            3578999999999999999999965 69999999997653  33456678899999998 89999999998876      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC-------
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHA--WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN-------  168 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~-------  168 (205)
                       .+..+++||++++++|.+++....  ...+++..++.++.|++.||.|||+   .+++||||||+||+++.+       
T Consensus        83 -~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dikp~NIl~~~~~~~~~~~  158 (289)
T 1x8b_A           83 -DDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHS---MSLVHMDIKPSNIFISRTSIPNAAS  158 (289)
T ss_dssp             -TTEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEC---------
T ss_pred             -CCeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHh---CCEeecCCCHHHEEEcCCCCCcccc
Confidence             668999999999999999997531  1368999999999999999999999   799999999999999844       


Q ss_pred             ------------CceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          169 ------------LVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       169 ------------~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                                  ..++|+|||.+.......   ...+|..|+|||..
T Consensus       159 ~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~---~~~gt~~y~aPE~~  202 (289)
T 1x8b_A          159 EEGDEDDWASNKVMFKIGDLGHVTRISSPQ---VEEGDSRFLANEVL  202 (289)
T ss_dssp             -----------CCCEEECCCTTCEETTCSC---CCCCCGGGCCHHHH
T ss_pred             cccccccccCCceEEEEcccccccccCCcc---ccCCCccccChhHh
Confidence                        479999999998766533   24699999999964

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.97  E-value=1.2e-31  Score=214.30  Aligned_cols=166  Identities=14%  Similarity=0.256  Sum_probs=139.6

Q ss_pred             cCCCcceeeccCcceEEEEEEecCCcEEEEEEecccC--CcCHHHHHHHHHHHhccC--CCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLR--HCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~--~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .+|++.+.||+|+||.||+|...+++.||+|++....  ......+.+|+.+++.++  ||||+++++++..       .
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~-------~  128 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT-------D  128 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-------S
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEec-------C
Confidence            4599999999999999999997779999999997553  234567889999999996  5999999998876       5


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++||| +.+++|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||+++ ++.++|+|||++
T Consensus       129 ~~~~lv~E-~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~---~~ivHrDlkp~NIll~-~~~~kl~DFG~a  201 (390)
T 2zmd_A          129 QYIYMVME-CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIV-DGMLKLIDFGIA  201 (390)
T ss_dssp             SEEEEEEE-CCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHHHT---TTCCCCCCCGGGEEES-SSCEEECCCSSS
T ss_pred             CEEEEEEe-cCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHEEEE-CCeEEEEecCcc
Confidence            67999999 56889999998654  68888899999999999999999   7999999999999995 589999999999


Q ss_pred             hhcccccc---cccccccccccCCCCC
Q 028725          180 LLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      +.......   .....||+.|+|||..
T Consensus       202 ~~~~~~~~~~~~~~~~gt~~y~aPE~~  228 (390)
T 2zmd_A          202 NQMQPDTTSVVKDSQVGAVNYMPPEAI  228 (390)
T ss_dssp             CCC---------CCSCCCGGGCCHHHH
T ss_pred             ccccCCCccccCCCCCcCCCccChHHh
Confidence            87654432   2345899999999963

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.97  E-value=1.4e-31  Score=209.69  Aligned_cols=172  Identities=20%  Similarity=0.405  Sum_probs=143.8

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec--------CCcEEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCccccccccee
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK--------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCF   90 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~--------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~   90 (205)
                      ...++|++.+.||+|+||.||+|...        ++..||+|+++... ......+.+|+.+++.+ +||||+++++++.
T Consensus        32 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~  111 (334)
T 2pvf_A           32 FPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT  111 (334)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             CCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEc
Confidence            34588999999999999999999863        46789999997543 23456788999999999 8999999999886


Q ss_pred             eecccCCCCCeEEEEEeecCCCcHHHhhccCCC--------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCceeec
Q 028725           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAW--------------QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSN  156 (205)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~--------------~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~  156 (205)
                      .       ....++|||++++++|.+++.....              ..+++..++.++.|++.||.|||+   .+++|+
T Consensus       112 ~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~  181 (334)
T 2pvf_A          112 Q-------DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHR  181 (334)
T ss_dssp             S-------SSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHH---TTEECS
T ss_pred             c-------CCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCeeCC
Confidence            5       5678999999999999999975431              248899999999999999999999   799999


Q ss_pred             CCccccEEeCCCCceeEcCCCchhhccccc---ccccccccccccCCCC
Q 028725          157 NLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  202 (205)
Q Consensus       157 dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~  202 (205)
                      ||||+||+++.++.++|+|||++.......   ......++..|+|||.
T Consensus       182 Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  230 (334)
T 2pvf_A          182 DLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEA  230 (334)
T ss_dssp             CCSGGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHH
T ss_pred             CCccceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHH
Confidence            999999999999999999999998665432   2233467788999995

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.97  E-value=2.4e-31  Score=209.63  Aligned_cols=176  Identities=16%  Similarity=0.311  Sum_probs=143.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeeccc-CCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD-DSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~-~~~   98 (205)
                      .++|++.+.||+|+||.||+|.. .+|+.||+|++....  ......+.+|+.+++.++||||+++++++...... ...
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   95 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence            57899999999999999999996 568999999986553  33356778999999999999999999988763211 112


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      .+..++||||+.+ ++.+.+.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+
T Consensus        96 ~~~~~lv~e~~~~-~l~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~  170 (351)
T 3mi9_A           96 KGSIYLVFDFCEH-DLAGLLSNVL-VKFTLSEIKRVMQMLLNGLYYIHR---NKILHRDMKAANVLITRDGVLKLADFGL  170 (351)
T ss_dssp             -CEEEEEEECCSE-EHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             CceEEEEEeccCC-CHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCHHHEEEcCCCCEEEccchh
Confidence            4578999999975 7777776543 368999999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccc-----cccccccccccccCCCCC
Q 028725          179 PLLAENA-----EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~-----~~~~~~~~~~~~~aPE~~  203 (205)
                      ++.....     .......+|..|+|||..
T Consensus       171 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  200 (351)
T 3mi9_A          171 ARAFSLAKNSQPNRYTNRVVTLWYRPPELL  200 (351)
T ss_dssp             CEECCCCSSSSCCCCCSSCSCGGGCCHHHH
T ss_pred             cccccccccccccccCCcccccCccCchhh
Confidence            9766532     223345789999999953

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.97  E-value=3e-32  Score=209.46  Aligned_cols=173  Identities=17%  Similarity=0.351  Sum_probs=134.5

Q ss_pred             HHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecc
Q 028725           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (205)
Q Consensus        17 ~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   94 (205)
                      +......++|++.+.||+|+||.||+|...  ..+|+|+++....  ...+.+.+|+.+++.++||||+++.+++.    
T Consensus        17 ~~~ei~~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----   90 (289)
T 3og7_A           17 DDWEIPDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST----   90 (289)
T ss_dssp             -CCBCCTTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC----
T ss_pred             CCCccCccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeecc----
Confidence            333445688999999999999999999864  3599999975532  33567889999999999999999988543    


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEc
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  174 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~  174 (205)
                          ....+++||++.+++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+
T Consensus        91 ----~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~  162 (289)
T 3og7_A           91 ----APQLAIVTQWCEGSSLYHHLHASE-TKFEMKKLIDIARQTARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIG  162 (289)
T ss_dssp             ----SSSCEEEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTEEEEC
T ss_pred             ----CCccEEEEEecCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHh---CCcccccCccceEEECCCCCEEEc
Confidence                346899999999999999986543 468999999999999999999999   799999999999999999999999


Q ss_pred             CCCchhhcccc---cccccccccccccCCCCC
Q 028725          175 SYNLPLLAENA---EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       175 Dfg~a~~~~~~---~~~~~~~~~~~~~aPE~~  203 (205)
                      |||++......   .......+|..|+|||..
T Consensus       163 Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  194 (289)
T 3og7_A          163 DFGLATEKSRWSGSHQFEQLSGSILWMAPEVI  194 (289)
T ss_dssp             CCC------------------CCCTTCCHHHH
T ss_pred             cceeccccccccccccccccCCCccccCchhh
Confidence            99999765532   222345789999999963

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.97  E-value=3.2e-31  Score=206.36  Aligned_cols=170  Identities=22%  Similarity=0.404  Sum_probs=143.4

Q ss_pred             hcCC-CcceeeccCcceEEEEEEec-----CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           23 TNNF-DTSAFMGEGSKGQMYRGRLK-----NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        23 ~~~y-~~~~~lg~g~~g~V~~~~~~-----~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      .++| ++.+.||+|+||.||++.+.     +++.||+|+++... ......+.+|+.+++.++||||+++.+++.+    
T Consensus        29 ~~r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----  104 (318)
T 3lxp_A           29 HKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCED----  104 (318)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE----
T ss_pred             cHHHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEec----
Confidence            3455 99999999999999998753     58899999997553 2335678899999999999999999998876    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                       ......++|||++++++|.+++...   .+++..++.++.|++.+|.|||+   .+++|+||||+||+++.++.++|+|
T Consensus       105 -~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~i~~~l~~~l~~LH~---~~ivH~Dikp~Nil~~~~~~~kl~D  177 (318)
T 3lxp_A          105 -AGAASLQLVMEYVPLGSLRDYLPRH---SIGLAQLLLFAQQICEGMAYLHA---QHYIHRDLAARNVLLDNDRLVKIGD  177 (318)
T ss_dssp             -TTTTEEEEEECCCTTCBHHHHGGGS---CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECC
T ss_pred             -CCCceEEEEEecccCCcHHHHHhhC---CCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCchheEEEcCCCCEEECC
Confidence             2346789999999999999999764   48899999999999999999999   7999999999999999999999999


Q ss_pred             CCchhhcccccc----cccccccccccCCCCC
Q 028725          176 YNLPLLAENAEK----VGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~~----~~~~~~~~~~~aPE~~  203 (205)
                      ||++........    .....++..|+|||..
T Consensus       178 fg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~  209 (318)
T 3lxp_A          178 FGLAKAVPEGHEYYRVREDGDSPVFWYAPECL  209 (318)
T ss_dssp             GGGCEECCTTCSEEEC---CCCCGGGCCHHHH
T ss_pred             ccccccccccccccccccCCCCCceeeChHHh
Confidence            999987765432    2334678889999963

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.97  E-value=1.2e-31  Score=203.71  Aligned_cols=168  Identities=20%  Similarity=0.378  Sum_probs=144.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|++.+.||+|+||.||+|... +..+|+|+++...  ....+.+.+|+.+++.++||||+++++++.+     ....
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~   82 (271)
T 3kmu_A            9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQS-----PPAP   82 (271)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECT-----TTSS
T ss_pred             HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEcc-----CCCC
Confidence            578999999999999999999985 8899999997653  2334678899999999999999999998865     2236


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCc--eeecCCccccEEeCCCCceeEcCCCc
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG--VFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~--i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ..+++||++++++|.+++.......+++..++.++.|++.||.|||+   .+  ++|+||||+||+++.++.++|+|||+
T Consensus        83 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~~~i~H~dikp~Nil~~~~~~~~l~~~~~  159 (271)
T 3kmu_A           83 HPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHT---LEPLIPRHALNSRSVMIDEDMTARISMADV  159 (271)
T ss_dssp             SCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTT---SSSCCTTCCCSGGGEEECTTSCEEEEGGGS
T ss_pred             CeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhc---CCCceecCCCccceEEEcCCcceeEEeccc
Confidence            78999999999999999987664568999999999999999999999   68  99999999999999999999998887


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +.....    ....+|..|+|||..
T Consensus       160 ~~~~~~----~~~~~t~~y~aPE~~  180 (271)
T 3kmu_A          160 KFSFQS----PGRMYAPAWVAPEAL  180 (271)
T ss_dssp             CCTTSC----TTCBSCGGGSCHHHH
T ss_pred             eeeecc----cCccCCccccChhhh
Confidence            754333    234789999999963

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.97  E-value=3.1e-31  Score=209.45  Aligned_cols=182  Identities=16%  Similarity=0.178  Sum_probs=138.3

Q ss_pred             HHHHHHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        17 ~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      .......++|++.+.||+|+||.||+|... +++.||+|++... ........+++..+..++||||+++++++......
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~   94 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQD-PRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER   94 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECC-TTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecC-ccccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence            455677899999999999999999999964 6899999998644 33344566788888889999999999988764433


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhcc--CCCCCCCHHHHHHHHHHHHHHHHHhh--cCCCCceeecCCccccEEeCC-CCc
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISG--HAWQSLTWTQRISAAIGVARGIQFLH--TGIVPGVFSNNLKITDILLDQ-NLV  170 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lh--~~~~~~i~h~dlkp~nilv~~-~~~  170 (205)
                      .......+++|||+++ +|.+.+..  .....+++..+..++.|++.||.|||  +   .+|+||||||+||+++. ++.
T Consensus        95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---~~ivH~Dlkp~NIll~~~~~~  170 (360)
T 3e3p_A           95 DRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPS---VNVCHRDIKPHNVLVNEADGT  170 (360)
T ss_dssp             CTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTT---TCCBCSCCCGGGEEEETTTTE
T ss_pred             cccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCC---CCeecCcCCHHHEEEeCCCCc
Confidence            3334458899999987 55444331  22246889999999999999999999  7   79999999999999996 899


Q ss_pred             eeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          171 AKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       171 ~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ++|+|||+++............+|..|+|||..
T Consensus       171 ~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~  203 (360)
T 3e3p_A          171 LKLCDFGSAKKLSPSEPNVAYICSRYYRAPELI  203 (360)
T ss_dssp             EEECCCTTCBCCCTTSCCCSTTSCGGGCCHHHH
T ss_pred             EEEeeCCCceecCCCCCcccccCCcceeCHHHH
Confidence            999999999888776666667899999999953

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.97  E-value=3.6e-31  Score=203.34  Aligned_cols=172  Identities=20%  Similarity=0.261  Sum_probs=144.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .+.|.+.+.||+|+||.||+|.. .++..|++|.+....  ....+.+.+|+.+++.++||||+++++++....   ...
T Consensus        25 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~---~~~  101 (290)
T 1t4h_A           25 GRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTV---KGK  101 (290)
T ss_dssp             SCEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEES---SSC
T ss_pred             ceeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecccc---CCC
Confidence            34588999999999999999995 458899999987543  334567889999999999999999999876421   224


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCc--eeecCCccccEEeC-CCCceeEcCC
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG--VFSNNLKITDILLD-QNLVAKISSY  176 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~--i~h~dlkp~nilv~-~~~~~~l~Df  176 (205)
                      ...++||||+++++|.+++....  .+++..++.++.|++.||.|||+   .+  ++|+||||+||+++ +++.++|+||
T Consensus       102 ~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~~~~i~H~dikp~Nil~~~~~~~~kl~Df  176 (290)
T 1t4h_A          102 KCIVLVTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHT---RTPPIIHRDLKCDNIFITGPTGSVKIGDL  176 (290)
T ss_dssp             EEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHT---SSSCCCCSCCCGGGEEESSTTSCEEECCT
T ss_pred             ceEEEEEEecCCCCHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHc---CCCCEEECCCCHHHEEEECCCCCEEEeeC
Confidence            56899999999999999997643  68899999999999999999999   67  99999999999998 7899999999


Q ss_pred             CchhhcccccccccccccccccCCCCC
Q 028725          177 NLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |++....... .....+|..|+|||..
T Consensus       177 g~~~~~~~~~-~~~~~~t~~y~aPE~~  202 (290)
T 1t4h_A          177 GLATLKRASF-AKAVIGTPEFMAPEMY  202 (290)
T ss_dssp             TGGGGCCTTS-BEESCSSCCCCCGGGG
T ss_pred             CCcccccccc-cccccCCcCcCCHHHH
Confidence            9997655433 3345799999999964

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.97  E-value=2e-32  Score=209.20  Aligned_cols=177  Identities=19%  Similarity=0.377  Sum_probs=137.6

Q ss_pred             cccCHHHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceee
Q 028725           12 RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE   91 (205)
Q Consensus        12 ~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   91 (205)
                      ..+.-.++....++|++.+.||+|+||.||++... |+.||+|+++..  ...+.+.+|+.+++.++||||+++++.+..
T Consensus         9 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   85 (278)
T 1byg_A            9 DEFYRSGWALNMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVE   85 (278)
T ss_dssp             ------CCBCCGGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECC
T ss_pred             hhhhhccccCChhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecch--hHHHHHHHHHHHHHhCCCCCEeeEEEEEEc
Confidence            33444444556789999999999999999999875 889999999643  356778899999999999999999998654


Q ss_pred             ecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCce
Q 028725           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVA  171 (205)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~  171 (205)
                            .....++++|++++++|.+++.......+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.+
T Consensus        86 ------~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~  156 (278)
T 1byg_A           86 ------EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVA  156 (278)
T ss_dssp             ------C--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCE
T ss_pred             ------CCCceEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHh---CCccccCCCcceEEEeCCCcE
Confidence                  13468999999999999999976542347889999999999999999999   799999999999999999999


Q ss_pred             eEcCCCchhhcccccccccccccccccCCCC
Q 028725          172 KISSYNLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      +|+|||++........  ...++..|+|||.
T Consensus       157 ~l~Dfg~~~~~~~~~~--~~~~~~~y~aPE~  185 (278)
T 1byg_A          157 KVSDFGLTKEASSTQD--TGKLPVKWTAPEA  185 (278)
T ss_dssp             EECCCCC--------------CCTTTSCHHH
T ss_pred             EEeecccccccccccc--CCCccccccCHHH
Confidence            9999999986654332  3467889999995

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.97  E-value=2.9e-31  Score=204.53  Aligned_cols=170  Identities=20%  Similarity=0.362  Sum_probs=144.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|++.+.||+|+||.||+|... +++.||+|++....  ......+.+|+.+++.++||||+++++++..       .
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~   74 (299)
T 2r3i_A            2 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT-------E   74 (299)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEE-------T
T ss_pred             cchhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEec-------C
Confidence            478999999999999999999965 68999999996543  2345678899999999999999999999876       5


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +..+++||++. ++|.+++.......+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++
T Consensus        75 ~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~dfg~~  150 (299)
T 2r3i_A           75 NKLYLVFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLA  150 (299)
T ss_dssp             TEEEEEEECCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECSTTHH
T ss_pred             CceEEEEEccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHeEEcCCCCEEECcchhh
Confidence            68999999997 599999986654578899999999999999999999   79999999999999999999999999999


Q ss_pred             hhccccc-ccccccccccccCCCCC
Q 028725          180 LLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ....... ......+|..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~y~aPE~~  175 (299)
T 2r3i_A          151 RAFGVPVRTYTHEVVTLWYRAPEIL  175 (299)
T ss_dssp             HHHCCCSBCTTSCBCCCTTCCHHHH
T ss_pred             hhccCCccccCcccccccccCcHHh
Confidence            8765433 33345789999999953

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.97  E-value=4.7e-32  Score=211.65  Aligned_cols=168  Identities=15%  Similarity=0.315  Sum_probs=135.1

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCc-CHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ++|++.+.||+|+||.||+|... +++.||+|++...... ....+.+|+.+++.++||||+++.+++..       ...
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~~   74 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHT-------EKS   74 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEEC-------SSC
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEee-------CCE
Confidence            68999999999999999999965 6899999999654322 22234579999999999999999998865       567


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .++||||+. ++|.+++.... ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++..
T Consensus        75 ~~lv~e~~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~  149 (324)
T 3mtl_A           75 LTLVFEYLD-KDLKQYLDDCG-NIINMHNVKLFLFQLLRGLAYCHR---QKVLHRDLKPQNLLINERGELKLADFGLARA  149 (324)
T ss_dssp             EEEEEECCS-EEHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHH---TTEEESSCCGGGEEECTTCCEEECSSSEEEC
T ss_pred             EEEEecccc-cCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCcCHHHEEECCCCCEEEccCccccc
Confidence            999999997 49999887654 468899999999999999999999   7999999999999999999999999999976


Q ss_pred             ccccc-ccccccccccccCCCCC
Q 028725          182 AENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ..... ......+|..|+|||..
T Consensus       150 ~~~~~~~~~~~~~t~~y~aPE~~  172 (324)
T 3mtl_A          150 KSIPTKTYDNEVVTLWYRPPDIL  172 (324)
T ss_dssp             C------------CGGGCCHHHH
T ss_pred             ccCCccccccccCcccccChhhh
Confidence            65433 23345789999999953

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.97  E-value=8.9e-32  Score=207.42  Aligned_cols=172  Identities=19%  Similarity=0.335  Sum_probs=141.2

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEecC----CcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLKN----GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~~----~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      ....+|++.+.||+|+||.||+|...+    ...+++|.+.... ....+.+.+|+.++++++||||+++++++..    
T Consensus        22 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----   97 (298)
T 3f66_A           22 PSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR----   97 (298)
T ss_dssp             GGGEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECC----
T ss_pred             ccceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEc----
Confidence            344678999999999999999998542    2358899887543 2345678899999999999999999998654    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                        .....+++||++++++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|
T Consensus        98 --~~~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~ql~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~D  171 (298)
T 3f66_A           98 --SEGSPLVVLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVAD  171 (298)
T ss_dssp             --SSSCCEEEEECCTTCBHHHHHHCTT-CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECS
T ss_pred             --CCCceEEEEeCCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCchheEEECCCCCEEECc
Confidence              2456889999999999999997643 468899999999999999999999   7999999999999999999999999


Q ss_pred             CCchhhccccc-----ccccccccccccCCCC
Q 028725          176 YNLPLLAENAE-----KVGHVTPYSGSINPTN  202 (205)
Q Consensus       176 fg~a~~~~~~~-----~~~~~~~~~~~~aPE~  202 (205)
                      ||++.......     ......+|..|+|||.
T Consensus       172 fg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~  203 (298)
T 3f66_A          172 FGLARDMYDKEYYSVHNKTGAKLPVKWMALES  203 (298)
T ss_dssp             CGGGCCCSCGGGCBC-----CCBCGGGSCHHH
T ss_pred             ccccccccccchhccccccCCCCCccccChHH
Confidence            99998665433     2223466788999995

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.97  E-value=2.3e-31  Score=202.41  Aligned_cols=165  Identities=22%  Similarity=0.416  Sum_probs=131.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccC----CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK----SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .++|++.+.||+|+||.||+|... +..+|+|++....    ....+.+.+|+.+++.++||||+++.+++..       
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------   77 (271)
T 3dtc_A            6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLK-------   77 (271)
T ss_dssp             TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECC-------
T ss_pred             hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEec-------
Confidence            478999999999999999999975 8899999986543    2335678899999999999999999998865       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCc---eeecCCccccEEeCC--------
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG---VFSNNLKITDILLDQ--------  167 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~---i~h~dlkp~nilv~~--------  167 (205)
                      ....+++|||+++++|.+++...   .+++..++.++.|++.||.|||+   .+   ++||||||+||+++.        
T Consensus        78 ~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~i~~~l~~~l~~lH~---~~~~~i~H~dikp~Nil~~~~~~~~~~~  151 (271)
T 3dtc_A           78 EPNLCLVMEFARGGPLNRVLSGK---RIPPDILVNWAVQIARGMNYLHD---EAIVPIIHRDLKSSNILILQKVENGDLS  151 (271)
T ss_dssp             C--CEEEEECCTTEEHHHHHTSS---CCCHHHHHHHHHHHHHHHHHHHH---SSSSCCCCSCCSGGGEEESSCCSSSCCS
T ss_pred             CCceEEEEEcCCCCCHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHh---CCCCceeecCCchHHEEEeccccccccc
Confidence            56789999999999999998643   68999999999999999999999   57   999999999999986        


Q ss_pred             CCceeEcCCCchhhcccccccccccccccccCCCC
Q 028725          168 NLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       168 ~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      ++.++|+|||++......... ...+|..|+|||.
T Consensus       152 ~~~~kl~Dfg~~~~~~~~~~~-~~~~~~~y~aPE~  185 (271)
T 3dtc_A          152 NKILKITDFGLAREWHRTTKM-SAAGAYAWMAPEV  185 (271)
T ss_dssp             SCCEEECCCCC--------------CCGGGSCHHH
T ss_pred             CcceEEccCCccccccccccc-CCCCccceeCHHH
Confidence            678999999999876654433 4589999999995

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.97  E-value=7.9e-32  Score=209.13  Aligned_cols=183  Identities=20%  Similarity=0.347  Sum_probs=151.5

Q ss_pred             ccccCHHHHHHHhcCCCcceeeccCcceEEEEEEe------cCCcEEEEEEecccCC-cCHHHHHHHHHHHhcc-CCCcc
Q 028725           11 YRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRL------KNGTFIAIRCLKMKKS-HSTRNFMHHIELISKL-RHCHL   82 (205)
Q Consensus        11 ~~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~------~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l-~~~~i   82 (205)
                      ...+...++....++|++.+.||+|+||.||+|..      .+++.||+|++..... .....+.+|+.++..+ +||||
T Consensus        14 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~i   93 (316)
T 2xir_A           14 RLPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNV   93 (316)
T ss_dssp             GSCCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTB
T ss_pred             hccccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCe
Confidence            34566677777789999999999999999999984      2467899999975432 2345788999999999 68999


Q ss_pred             cccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCC--------------CCCCHHHHHHHHHHHHHHHHHhhcC
Q 028725           83 VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAW--------------QSLTWTQRISAAIGVARGIQFLHTG  148 (205)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~--------------~~~~~~~~~~i~~~i~~~l~~lh~~  148 (205)
                      +++++.+..      .+...++++||+++++|.+++.....              ..+++..++.++.|++.||.|||+ 
T Consensus        94 v~~~~~~~~------~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~-  166 (316)
T 2xir_A           94 VNLLGACTK------PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS-  166 (316)
T ss_dssp             CCEEEEECC------TTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHH-
T ss_pred             eeEEEEEec------CCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHh-
Confidence            999998764      13458999999999999999986542              128899999999999999999999 


Q ss_pred             CCCceeecCCccccEEeCCCCceeEcCCCchhhccccc---ccccccccccccCCCC
Q 028725          149 IVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  202 (205)
Q Consensus       149 ~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~  202 (205)
                        .+++||||||+||+++.++.++|+|||+++......   ......+|..|+|||.
T Consensus       167 --~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~  221 (316)
T 2xir_A          167 --RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPET  221 (316)
T ss_dssp             --TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHH
T ss_pred             --CCcccccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchh
Confidence              799999999999999999999999999998665432   2233567889999995

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.97  E-value=1.9e-31  Score=208.70  Aligned_cols=171  Identities=22%  Similarity=0.344  Sum_probs=141.2

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCc--CHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH--STRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ...++|++.+.||+|+||.||+|... +++.||+|++......  ....+.+|+.+++.++||||+++++++.+      
T Consensus        22 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~------   95 (331)
T 4aaa_A           22 QSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKK------   95 (331)
T ss_dssp             BCGGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE------
T ss_pred             hhhhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeec------
Confidence            34678999999999999999999964 5899999998654322  24557789999999999999999999876      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ....++|||++++++|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||
T Consensus        96 -~~~~~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg  169 (331)
T 4aaa_A           96 -KKRWYLVFEFVDHTILDDLELFPN--GLDYQVVQKYLFQIINGIGFCHS---HNIIHRDIKPENILVSQSGVVKLCDFG  169 (331)
T ss_dssp             -TTEEEEEEECCSEEHHHHHHHSTT--CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCT
T ss_pred             -CCEEEEEEecCCcchHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHH---CCEEccCcChheEEEcCCCcEEEEeCC
Confidence             678999999999999988876544  68999999999999999999999   799999999999999999999999999


Q ss_pred             chhhccccc-ccccccccccccCCCCC
Q 028725          178 LPLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ++....... ......++..|+|||..
T Consensus       170 ~~~~~~~~~~~~~~~~~t~~y~aPE~~  196 (331)
T 4aaa_A          170 FARTLAAPGEVYDDEVATRWYRAPELL  196 (331)
T ss_dssp             TC------------CCCCCTTCCHHHH
T ss_pred             CceeecCCccccCCCcCCccccCcccc
Confidence            997665433 33445899999999953

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.97  E-value=9e-32  Score=210.09  Aligned_cols=169  Identities=21%  Similarity=0.352  Sum_probs=138.8

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCc----EEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGT----FIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~----~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      .++|++.+.||+|+||.||+|.+. ++.    +|++|.+.... ......+.+|+.+++.++||||+++++++.      
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~------   85 (325)
T 3kex_A           12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP------   85 (325)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC------
T ss_pred             HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc------
Confidence            467999999999999999999954 344    37788775442 344556778999999999999999999774      


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                        ....++|+||+.+++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+||
T Consensus        86 --~~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~kl~Df  159 (325)
T 3kex_A           86 --GSSLQLVTQYLPLGSLLDHVRQHR-GALGPQLLLNWGVQIAKGMYYLEE---HGMVHRNLAARNVLLKSPSQVQVADF  159 (325)
T ss_dssp             --BSSEEEEEECCTTCBSHHHHHSSG-GGSCTTHHHHHHHHHHHHHHHHHH---TTCCCSCCSSTTEEESSSSCEEECSC
T ss_pred             --CCccEEEEEeCCCCCHHHHHHHcc-ccCCHHHHHHHHHHHHHHHHHHHh---CCCCCCccchheEEECCCCeEEECCC
Confidence              346899999999999999987653 468888999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhcccccc---cccccccccccCCCCC
Q 028725          177 NLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      |+++.......   .....++..|+|||..
T Consensus       160 g~a~~~~~~~~~~~~~~~~~~~~y~aPE~~  189 (325)
T 3kex_A          160 GVADLLPPDDKQLLYSEAKTPIKWMALESI  189 (325)
T ss_dssp             SGGGGSCCCTTCCC-----CCTTTSCHHHH
T ss_pred             CcccccCcccccccccCCCCcccccChHHh
Confidence            99987755432   2334677899999963

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.97  E-value=3e-31  Score=205.00  Aligned_cols=173  Identities=18%  Similarity=0.295  Sum_probs=143.3

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC----CcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK----SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      ..++|++.+.||+|+||.||+|.. .++..+|+|+++...    ......+.+|+.+++.++||||+++.+++..     
T Consensus         3 l~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----   77 (305)
T 2wtk_C            3 LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYN-----   77 (305)
T ss_dssp             --CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----
T ss_pred             cccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEc-----
Confidence            357899999999999999999995 468899999996542    3345678899999999999999999998754     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                      ......+++|||+.++ +.+++.......+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+||
T Consensus        78 ~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~---~~i~H~dlkp~NIl~~~~~~~kl~df  153 (305)
T 2wtk_C           78 EEKQKMYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHS---QGIVHKDIKPGNLLLTTGGTLKISAL  153 (305)
T ss_dssp             C---CEEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCC
T ss_pred             CCCCeEEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCcccEEEcCCCcEEeecc
Confidence            2245789999999875 7777775544579999999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhcccc---cccccccccccccCCCCC
Q 028725          177 NLPLLAENA---EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~---~~~~~~~~~~~~~aPE~~  203 (205)
                      |++......   .......++..|+|||..
T Consensus       154 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  183 (305)
T 2wtk_C          154 GVAEALHPFAADDTCRTSQGSPAFQPPEIA  183 (305)
T ss_dssp             TTCEECCTTCSSCEECCCCSCGGGCCHHHH
T ss_pred             ccccccCccccccccccCCCCCCCcChhhc
Confidence            999766432   233345799999999963

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.97  E-value=7e-31  Score=205.96  Aligned_cols=171  Identities=20%  Similarity=0.369  Sum_probs=143.8

Q ss_pred             HHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhc--cCCCcccccccceeeecccCC
Q 028725           20 EEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISK--LRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        20 ~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~--l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ....++|.+.+.||+|+||.||+|.. +++.||+|++...   ....+.+|.+++..  ++||||+++++.+....   .
T Consensus        38 ~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~---~  110 (342)
T 1b6c_B           38 RTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDN---G  110 (342)
T ss_dssp             HHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCC---S
T ss_pred             ccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccC---C
Confidence            34567899999999999999999998 4899999999633   34567778888877  78999999999886521   1


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhh--------cCCCCceeecCCccccEEeCCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH--------TGIVPGVFSNNLKITDILLDQNL  169 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh--------~~~~~~i~h~dlkp~nilv~~~~  169 (205)
                      .....+++|||+++++|.+++...   .+++..++.++.|++.||.|||        +   .+++||||||+||+++.++
T Consensus       111 ~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~---~~ivH~Dlkp~NIll~~~~  184 (342)
T 1b6c_B          111 TWTQLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGK---PAIAHRDLKSKNILVKKNG  184 (342)
T ss_dssp             SCCCEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCB---CEEECSCCSGGGEEECTTS
T ss_pred             ccceeEEEEeecCCCcHHHHHhcc---CccHHHHHHHHHHHHHHHHHHHHHHhhhccc---CCeeeCCCCHHHEEECCCC
Confidence            113789999999999999999764   5889999999999999999999        6   7999999999999999999


Q ss_pred             ceeEcCCCchhhccccc-----ccccccccccccCCCCC
Q 028725          170 VAKISSYNLPLLAENAE-----KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       170 ~~~l~Dfg~a~~~~~~~-----~~~~~~~~~~~~aPE~~  203 (205)
                      .++|+|||++.......     ......+|..|+|||..
T Consensus       185 ~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  223 (342)
T 1b6c_B          185 TCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVL  223 (342)
T ss_dssp             CEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHH
T ss_pred             CEEEEECCCceeccccccccccccccCCcCcccCCHhhh
Confidence            99999999997666543     23445899999999964

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=1.9e-31  Score=211.67  Aligned_cols=170  Identities=14%  Similarity=0.223  Sum_probs=137.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|++.+.||+|+||.||+|.. .+|+.||+|++....  ....+.+.+|+.+++.++||||+++.+++...... ...
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~-~~~  102 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETL-DDF  102 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSST-TTC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCcc-ccC
Confidence            57899999999999999999995 469999999996542  22346688999999999999999999987652110 112


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++|||++ +++|.+++...   .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++
T Consensus       103 ~~~~lv~e~~-~~~L~~~~~~~---~l~~~~~~~~~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a  175 (367)
T 1cm8_A          103 TDFYLVMPFM-GTDLGKLMKHE---KLGEDRIQFLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLA  175 (367)
T ss_dssp             CCCEEEEECC-SEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             ceEEEEEecC-CCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHH---CCccccCcCHHHEEEcCCCCEEEEeeecc
Confidence            4579999999 77999998763   58899999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      +.....  .....+|.+|+|||.
T Consensus       176 ~~~~~~--~~~~~~t~~y~aPE~  196 (367)
T 1cm8_A          176 RQADSE--MTGYVVTRWYRAPEV  196 (367)
T ss_dssp             EECCSS--CCSSCSCGGGCCTHH
T ss_pred             cccccc--cCcCcCCCCcCCHHH
Confidence            876543  334588999999995

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.97  E-value=7e-31  Score=205.60  Aligned_cols=170  Identities=20%  Similarity=0.383  Sum_probs=136.6

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHH--HhccCCCcccccccceeeecccCCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIEL--ISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~--l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ..++|++.+.||+|+||.||+|.. +++.||+|+++..   ....+..|.++  +..++||||+++++.+.....  ...
T Consensus        11 ~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~--~~~   84 (336)
T 3g2f_A           11 DLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA---NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTA--DGR   84 (336)
T ss_dssp             CTTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECT--TSC
T ss_pred             ChHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc---chhhHHHHHHHHHHHhccCcchhhheeccccccc--CCC
Confidence            458899999999999999999987 5899999999643   23334444444  455899999999876544222  224


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC---------ceeecCCccccEEeCCCCc
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP---------GVFSNNLKITDILLDQNLV  170 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~---------~i~h~dlkp~nilv~~~~~  170 (205)
                      ...++||||+++++|.+++....   .++...+.++.|++.||.|||+   .         +++||||||+||+++.++.
T Consensus        85 ~~~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~i~~qi~~~L~~LH~---~~~~~~~~~~~ivH~Dikp~Nill~~~~~  158 (336)
T 3g2f_A           85 MEYLLVMEYYPNGSLXKYLSLHT---SDWVSSCRLAHSVTRGLAYLHT---ELPRGDHYKPAISHRDLNSRNVLVKNDGT  158 (336)
T ss_dssp             EEEEEEECCCTTCBHHHHHHHCC---BCHHHHHHHHHHHHHHHHHHHC---CBCCGGGCBCCEECSSCSGGGEEECTTSC
T ss_pred             ceEEEEEecCCCCcHHHHHhhcc---cchhHHHHHHHHHHHHHHHHHh---hhccccccccceeecccccceEEEcCCCc
Confidence            46789999999999999997653   5888899999999999999999   6         9999999999999999999


Q ss_pred             eeEcCCCchhhccccc---------ccccccccccccCCCCC
Q 028725          171 AKISSYNLPLLAENAE---------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       171 ~~l~Dfg~a~~~~~~~---------~~~~~~~~~~~~aPE~~  203 (205)
                      ++|+|||++.......         ......||..|+|||..
T Consensus       159 ~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  200 (336)
T 3g2f_A          159 CVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVL  200 (336)
T ss_dssp             EEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHH
T ss_pred             EEEeeccceeecccccccCccccccccccCCCccceeCchhh
Confidence            9999999997665321         22234799999999964

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.97  E-value=1.5e-31  Score=211.90  Aligned_cols=173  Identities=10%  Similarity=0.132  Sum_probs=137.9

Q ss_pred             hcCCCcceeeccCcceEEEEEEecC------CcEEEEEEecccCCcC-----------HHHHHHHHHHHhccCCCccccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHS-----------TRNFMHHIELISKLRHCHLVSA   85 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~------~~~vaiK~~~~~~~~~-----------~~~~~~e~~~l~~l~~~~i~~~   85 (205)
                      .++|++.+.||+|+||.||+|....      ++.||+|++.......           ......|+..+..++||||+++
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~  113 (364)
T 3op5_A           34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY  113 (364)
T ss_dssp             CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred             CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence            4589999999999999999999654      4789999986543111           1123345566778889999999


Q ss_pred             ccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEe
Q 028725           86 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL  165 (205)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv  165 (205)
                      ++++....   ......++||||+ +++|.+++.... ..+++..++.++.|++.||.|||+   .+|+||||||+||++
T Consensus       114 ~~~~~~~~---~~~~~~~lv~e~~-g~~L~~~~~~~~-~~l~~~~~~~i~~qi~~~l~~lH~---~~iiHrDlkp~Nill  185 (364)
T 3op5_A          114 WGSGLHDK---NGKSYRFMIMDRF-GSDLQKIYEANA-KRFSRKTVLQLSLRILDILEYIHE---HEYVHGDIKASNLLL  185 (364)
T ss_dssp             EEEEEEEE---TTEEEEEEEEECE-EEEHHHHHHHTT-SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEE
T ss_pred             Eeeeeecc---CCcceEEEEEeCC-CCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHH---CCeEEecCCHHHEEE
Confidence            99887622   1235689999999 999999997643 479999999999999999999999   799999999999999


Q ss_pred             C--CCCceeEcCCCchhhccccccc--------ccccccccccCCCCC
Q 028725          166 D--QNLVAKISSYNLPLLAENAEKV--------GHVTPYSGSINPTNS  203 (205)
Q Consensus       166 ~--~~~~~~l~Dfg~a~~~~~~~~~--------~~~~~~~~~~aPE~~  203 (205)
                      +  .++.++|+|||+++........        ....||..|+|||..
T Consensus       186 ~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  233 (364)
T 3op5_A          186 NYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAH  233 (364)
T ss_dssp             ESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHH
T ss_pred             ecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHh
Confidence            9  8899999999999766544322        223599999999964

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.97  E-value=1.9e-31  Score=211.81  Aligned_cols=172  Identities=15%  Similarity=0.175  Sum_probs=133.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|++.+.||+|+||.||+|.. .+++.||+|++....  ......+.+|+.+++.++||||+++.+++..... ....
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~-~~~~  102 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKS-LEEF  102 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCS-TTTC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccc-cccc
Confidence            57899999999999999999995 468899999997542  2334667899999999999999999998765211 0123


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++|||++.+ +|.+.+..    .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++
T Consensus       103 ~~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a  174 (371)
T 2xrw_A          103 QDVYIVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLA  174 (371)
T ss_dssp             CEEEEEEECCSE-EHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCCCC-
T ss_pred             cceEEEEEcCCC-CHHHHHhh----ccCHHHHHHHHHHHHHHHHHHHH---CCeecccCCHHHEEEcCCCCEEEEEeecc
Confidence            478999999965 88888753    58889999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +............+|..|+|||..
T Consensus       175 ~~~~~~~~~~~~~gt~~y~aPE~~  198 (371)
T 2xrw_A          175 RTAGTSFMMTPYVVTRYYRAPEVI  198 (371)
T ss_dssp             ---------------CTTCCHHHH
T ss_pred             cccccccccCCceecCCccCHHHh
Confidence            877665555556899999999963

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.97  E-value=4.4e-31  Score=202.64  Aligned_cols=171  Identities=18%  Similarity=0.281  Sum_probs=148.8

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ...++|++.+.||+|+||.||+|... +++.||+|++....  ......+.+|+.++++++||||+++++++..      
T Consensus        19 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~------   92 (287)
T 2wei_A           19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILED------   92 (287)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEEC------
T ss_pred             HHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeC------
Confidence            34578999999999999999999964 68999999996543  4456788999999999999999999998865      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC---CceeEc
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN---LVAKIS  174 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~---~~~~l~  174 (205)
                       ....++++|++++++|.+.+....  .+++..++.++.|++.||.|||+   .+++|+||+|+||+++.+   +.++|+
T Consensus        93 -~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dl~p~NIlv~~~~~~~~~kL~  166 (287)
T 2wei_A           93 -SSSFYIVGELYTGGELFDEIIKRK--RFSEHDAARIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKII  166 (287)
T ss_dssp             -SSEEEEEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred             -CCeEEEEEEccCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCChhhEEEecCCCcccEEEe
Confidence             668999999999999999887543  68899999999999999999999   799999999999999754   479999


Q ss_pred             CCCchhhcccccccccccccccccCCCCC
Q 028725          175 SYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       175 Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |||++.............++..|+|||..
T Consensus       167 Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~  195 (287)
T 2wei_A          167 DFGLSTCFQQNTKMKDRIGTAYYIAPEVL  195 (287)
T ss_dssp             STTGGGTBCCCSSCSCHHHHHTTCCHHHH
T ss_pred             ccCcceeecCCCccccccCcccccChHHh
Confidence            99999887766655566889999999953

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.97  E-value=1e-31  Score=207.30  Aligned_cols=175  Identities=15%  Similarity=0.274  Sum_probs=128.0

Q ss_pred             HHHHHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           18 ELEEATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        18 ~~~~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      .+....++|++.+.||+|+||.||+|.. .+++.||+|++.... ......+.+|+.+++.++||||+++++.+..    
T Consensus         9 p~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~----   84 (303)
T 2vwi_A            9 PWSINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVV----   84 (303)
T ss_dssp             ----CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEES----
T ss_pred             ccccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEee----
Confidence            3445678999999999999999999994 468899999986543 3345677889999999999999999998876    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhcc------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISG------HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL  169 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~  169 (205)
                         .+..+++||++++++|.+++..      .....+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++
T Consensus        85 ---~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~  158 (303)
T 2vwi_A           85 ---KDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHK---NGQIHRDVKAGNILLGEDG  158 (303)
T ss_dssp             ---SSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTC
T ss_pred             ---cCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHh---CCCCCCCCChhhEEEcCCC
Confidence               5679999999999999999863      122468999999999999999999999   7999999999999999999


Q ss_pred             ceeEcCCCchhhccccc------ccccccccccccCCCC
Q 028725          170 VAKISSYNLPLLAENAE------KVGHVTPYSGSINPTN  202 (205)
Q Consensus       170 ~~~l~Dfg~a~~~~~~~------~~~~~~~~~~~~aPE~  202 (205)
                      .++|+|||++.......      ......+|..|+|||.
T Consensus       159 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  197 (303)
T 2vwi_A          159 SVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEV  197 (303)
T ss_dssp             CEEECCCHHHHHCC---------------CCCTTCCHHH
T ss_pred             CEEEEeccchheeccCCCccchhhhcccCCCccccCHHH
Confidence            99999999997665432      1233578999999995

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.97  E-value=5.8e-31  Score=204.25  Aligned_cols=170  Identities=21%  Similarity=0.359  Sum_probs=141.2

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ...++|++.+.||+|+||.||+|... +|+.||+|.+...  .....+.+|+.+++.++||||+++++.+..       .
T Consensus        26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~   96 (314)
T 3com_A           26 QPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE--SDLQEIIKEISIMQQCDSPHVVKYYGSYFK-------N   96 (314)
T ss_dssp             ----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETT--SCCHHHHHHHHHHHTCCCTTBCCEEEEEEE-------T
T ss_pred             cchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCch--HHHHHHHHHHHHHHhCCCCCCccEEEEEEe-------C
Confidence            34577999999999999999999965 5899999999754  345678899999999999999999998876       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...+++||++++++|.+++.... ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++
T Consensus        97 ~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~  172 (314)
T 3com_A           97 TDLWIVMEYCGAGSVSDIIRLRN-KTLTEDEIATILQSTLKGLEYLHF---MRKIHRDIKAGNILLNTEGHAKLADFGVA  172 (314)
T ss_dssp             TEEEEEEECCTTEEHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTC
T ss_pred             CEEEEEeecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHh---CCCcCCCcCHHHEEECCCCCEEEeecccc
Confidence            68999999999999999987322 468999999999999999999999   79999999999999999999999999999


Q ss_pred             hhccccc-ccccccccccccCCCCC
Q 028725          180 LLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ....... ......++..|+|||..
T Consensus       173 ~~~~~~~~~~~~~~~~~~y~aPE~~  197 (314)
T 3com_A          173 GQLTDTMAKRNTVIGTPFWMAPEVI  197 (314)
T ss_dssp             EECBTTBSCBCCCCSCGGGCCHHHH
T ss_pred             hhhhhhccccCccCCCCCccChhhc
Confidence            7665432 33445899999999963

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.97  E-value=9.3e-32  Score=205.41  Aligned_cols=175  Identities=17%  Similarity=0.303  Sum_probs=144.9

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ...++|++.+.||+|+||.||+|... +++.|++|.+....  ....+.+.+|+.+++.++||||+++++.+..     .
T Consensus         3 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~   77 (279)
T 2w5a_A            3 SRAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIID-----R   77 (279)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----G
T ss_pred             CchhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEec-----C
Confidence            34678999999999999999999964 68999999997553  2335678899999999999999999997754     1


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCc-----eeecCCccccEEeCCCCc
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGH--AWQSLTWTQRISAAIGVARGIQFLHTGIVPG-----VFSNNLKITDILLDQNLV  170 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~-----i~h~dlkp~nilv~~~~~  170 (205)
                      .....+++|||+++++|.+++...  ....+++..++.++.|++.||.|||+   .+     ++|+||||+||+++.++.
T Consensus        78 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~~~~~~ivH~dl~p~NIl~~~~~~  154 (279)
T 2w5a_A           78 TNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHR---RSDGGHTVLHRDLKPANVFLDGKQN  154 (279)
T ss_dssp             GGTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---HC------CCCCCSGGGEEECSSSC
T ss_pred             CCceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhc---ccCCCCeeEEeccchhhEEEcCCCC
Confidence            256799999999999999998743  22358999999999999999999999   67     999999999999999999


Q ss_pred             eeEcCCCchhhcccccc-cccccccccccCCCCC
Q 028725          171 AKISSYNLPLLAENAEK-VGHVTPYSGSINPTNS  203 (205)
Q Consensus       171 ~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~aPE~~  203 (205)
                      ++|+|||++........ .....++..|+|||..
T Consensus       155 ~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  188 (279)
T 2w5a_A          155 VKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQM  188 (279)
T ss_dssp             EEECCCCHHHHC---CHHHHHHHSCCTTCCHHHH
T ss_pred             EEEecCchheeeccccccccccCCCccccChHHh
Confidence            99999999987665432 2335789999999963

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.97  E-value=2.4e-31  Score=204.91  Aligned_cols=177  Identities=18%  Similarity=0.309  Sum_probs=140.9

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecc------
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYF------   94 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~------   94 (205)
                      ..++|++.+.||+|+||.||+|.. .+++.||+|++... ......+.+|+.+++.++||||+++++.+.+...      
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   82 (303)
T 1zy4_A            4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT   82 (303)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred             ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence            357899999999999999999996 46899999999643 3345678899999999999999999987764210      


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEc
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  174 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~  174 (205)
                      ........+++||++++++|.+++.... ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+
T Consensus        83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dlkp~Nil~~~~~~~kl~  158 (303)
T 1zy4_A           83 AVKKKSTLFIQMEYCENGTLYDLIHSEN-LNQQRDEYWRLFRQILEALSYIHS---QGIIHRDLKPMNIFIDESRNVKIG  158 (303)
T ss_dssp             ---CEEEEEEEEECCCSCBHHHHHHHSC-GGGCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEEC
T ss_pred             ccccCCceEEEEecCCCCCHHHhhhccc-cccchHHHHHHHHHHHHHHHHHHh---CCeecccCCHHhEEEcCCCCEEEe
Confidence            0122467899999999999999997543 467888999999999999999999   799999999999999999999999


Q ss_pred             CCCchhhcccc---------------cccccccccccccCCCCC
Q 028725          175 SYNLPLLAENA---------------EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       175 Dfg~a~~~~~~---------------~~~~~~~~~~~~~aPE~~  203 (205)
                      |||++......               .......++..|+|||..
T Consensus       159 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  202 (303)
T 1zy4_A          159 DFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVL  202 (303)
T ss_dssp             CCCCCSCTTC-------------------------CTTSCHHHH
T ss_pred             eCcchhhcccccchhccccccccccccccccCCCcccccCcccc
Confidence            99999765432               122345789999999963

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.97  E-value=4.6e-31  Score=205.75  Aligned_cols=176  Identities=19%  Similarity=0.322  Sum_probs=145.7

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe--cCCcEEEEEEecccC--CcCHHHHHHHHHHHhcc---CCCcccccccceeeecc
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL--KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKL---RHCHLVSALGHCFECYF   94 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~--~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l---~~~~i~~~~~~~~~~~~   94 (205)
                      ..++|++.+.||+|+||.||+|..  .+++.||+|++....  ......+.+|+.+++.+   +||||+++++++.....
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~   88 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   88 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence            458899999999999999999997  358899999996543  22234566777777666   89999999998763111


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEc
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  174 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~  174 (205)
                        ......++++|++. ++|.+++.......+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+
T Consensus        89 --~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~gi~H~dlkp~Nili~~~~~~kl~  162 (326)
T 1blx_A           89 --DRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLA  162 (326)
T ss_dssp             --SSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEEC
T ss_pred             --CCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCCHHHeEEcCCCCEEEe
Confidence              12467899999997 599999986654568999999999999999999999   799999999999999999999999


Q ss_pred             CCCchhhcccccccccccccccccCCCCC
Q 028725          175 SYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       175 Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |||+++............+|..|+|||..
T Consensus       163 Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~  191 (326)
T 1blx_A          163 DFGLARIYSFQMALTSVVVTLWYRAPEVL  191 (326)
T ss_dssp             SCCSCCCCCGGGGGCCCCCCCTTCCHHHH
T ss_pred             cCcccccccCCCCccccccccceeCHHHH
Confidence            99999877765555667899999999964

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.97  E-value=9.8e-31  Score=201.14  Aligned_cols=169  Identities=21%  Similarity=0.275  Sum_probs=141.0

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      ..|.....||+|+||.||+|.. .++..||+|.+........+.+.+|+.+++.++||||+++++.+..       ....
T Consensus        22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-------~~~~   94 (295)
T 2clq_A           22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSE-------NGFI   94 (295)
T ss_dssp             CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEE-------TTEE
T ss_pred             cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEe-------CCcE
Confidence            3455556999999999999995 4688999999987666667889999999999999999999998876       5689


Q ss_pred             EEEEeecCCCcHHHhhccCC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC-CCceeEcCCCchh
Q 028725          103 FLIFEYVPNGTLRSWISGHA-WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-NLVAKISSYNLPL  180 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~-~~~~~l~Dfg~a~  180 (205)
                      ++++|++++++|.+++.... ...+++..++.++.|++.||.|||+   .+++|+||||+||+++. ++.++|+|||++.
T Consensus        95 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~  171 (295)
T 2clq_A           95 KIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHD---NQIVHRDIKGDNVLINTYSGVLKISDFGTSK  171 (295)
T ss_dssp             EEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTCCEEECCTTTCE
T ss_pred             EEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHh---CCEEccCCChhhEEEECCCCCEEEeeccccc
Confidence            99999999999999987542 2356788899999999999999999   79999999999999987 8999999999997


Q ss_pred             hccccc-ccccccccccccCCCC
Q 028725          181 LAENAE-KVGHVTPYSGSINPTN  202 (205)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~~aPE~  202 (205)
                      ...... ......++..|+|||.
T Consensus       172 ~~~~~~~~~~~~~~~~~y~aPE~  194 (295)
T 2clq_A          172 RLAGINPCTETFTGTLQYMAPEI  194 (295)
T ss_dssp             ESCC-----CCCCCCGGGCCHHH
T ss_pred             ccCCCCCcccccCCCccccChhh
Confidence            665432 2344588999999995

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.97  E-value=1.3e-31  Score=205.57  Aligned_cols=170  Identities=13%  Similarity=0.227  Sum_probs=129.9

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCc--CHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSH--STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ..++|++.+.||+|+||.||+|.. .+++.||+|++......  ....+.++...++.++||||+++.+.+.+       
T Consensus         5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~-------   77 (290)
T 3fme_A            5 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFR-------   77 (290)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEC-------
T ss_pred             cHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeec-------
Confidence            457899999999999999999996 46899999999754322  22334455556888899999999998876       


Q ss_pred             CCeEEEEEeecCCCcHHHhhcc--CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-ceeecCCccccEEeCCCCceeEcC
Q 028725           99 VSRIFLIFEYVPNGTLRSWISG--HAWQSLTWTQRISAAIGVARGIQFLHTGIVP-GVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~-~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                      ....+++||++++ +|.+++..  .....+++..++.++.|++.||.|||+   . +++||||||+||+++.++.++|+|
T Consensus        78 ~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~~i~H~dlkp~Nil~~~~~~~kl~D  153 (290)
T 3fme_A           78 EGDVWICMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHS---KLSVIHRDVKPSNVLINALGQVKMCD  153 (290)
T ss_dssp             SSSEEEEEECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---HSCCCCCCCSGGGCEECTTCCEEBCC
T ss_pred             cCCEEEEEehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhh---cCCeecCCCCHHHEEECCCCCEEEee
Confidence            5679999999975 88877653  122478999999999999999999999   6 999999999999999999999999


Q ss_pred             CCchhhcccccccccccccccccCCCC
Q 028725          176 YNLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       176 fg~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      ||++.............+|..|+|||.
T Consensus       154 fg~~~~~~~~~~~~~~~~t~~y~aPE~  180 (290)
T 3fme_A          154 FGISGYLVDDVAKDIDAGCKPYMAPER  180 (290)
T ss_dssp             C---------------CCCCCCSCHHH
T ss_pred             cCCcccccccccccccCCCccccChhh
Confidence            999988777666565689999999997

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.97  E-value=7.3e-31  Score=202.11  Aligned_cols=167  Identities=11%  Similarity=0.145  Sum_probs=142.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|++.+.||+|+||.||+|.. .+++.||+|++....  ....+.+|+..++.+ +|++++++.+++..       ..
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~-------~~   79 (298)
T 1csn_A            9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQE-------GL   79 (298)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEE-------TT
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCC-------Cc
Confidence            57799999999999999999995 569999999986442  334577899999999 79999999988765       67


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc-----eeEcC
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV-----AKISS  175 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~-----~~l~D  175 (205)
                      ..+++||++ +++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.     ++|+|
T Consensus        80 ~~~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~D  154 (298)
T 1csn_A           80 HNVLVIDLL-GPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVVD  154 (298)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECCSSSTTTTCEEECC
T ss_pred             eeEEEEEec-CCCHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEeccCCCCCCCeEEEEE
Confidence            899999999 889999998653 368999999999999999999999   79999999999999987765     99999


Q ss_pred             CCchhhcccccc--------cccccccccccCCCCC
Q 028725          176 YNLPLLAENAEK--------VGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~~--------~~~~~~~~~~~aPE~~  203 (205)
                      ||+++.......        .....+|..|+|||..
T Consensus       155 fg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  190 (298)
T 1csn_A          155 FGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTH  190 (298)
T ss_dssp             CTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHH
T ss_pred             CccccccccccccccccccCccCCCCCcccCCchhh
Confidence            999987665432        2345799999999964

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=2.8e-31  Score=211.05  Aligned_cols=168  Identities=20%  Similarity=0.364  Sum_probs=130.7

Q ss_pred             CCCcceeeccCcceEEEEEEec--CC--cEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           25 NFDTSAFMGEGSKGQMYRGRLK--NG--TFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~~--~~--~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .|.+.+.||+|+||.||+|...  ++  ..+|+|.++... ....+.+.+|+.+++.++||||+++++++..      ..
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~------~~  163 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR------SE  163 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECC------CS
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEc------CC
Confidence            4677899999999999999953  22  358899886542 3446778999999999999999999998754      14


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +..++||||+++++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++
T Consensus       164 ~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~kL~DFG~a  239 (373)
T 3c1x_A          164 GSPLVVLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLA  239 (373)
T ss_dssp             SCCEEEEECCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC---
T ss_pred             CCeEEEEECCCCCCHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHH---CCEecCccchheEEECCCCCEEEeecccc
Confidence            56789999999999999997544 468889999999999999999999   79999999999999999999999999999


Q ss_pred             hhccccc-----ccccccccccccCCCC
Q 028725          180 LLAENAE-----KVGHVTPYSGSINPTN  202 (205)
Q Consensus       180 ~~~~~~~-----~~~~~~~~~~~~aPE~  202 (205)
                      +......     ......++..|+|||.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~  267 (373)
T 3c1x_A          240 RDMYDKEFDSVHNKTGAKLPVKWMALES  267 (373)
T ss_dssp             ------------------CCGGGSCHHH
T ss_pred             ccccccccccccccCCCCCcccccChHH
Confidence            8664432     1122466788999995

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=7.5e-31  Score=201.36  Aligned_cols=169  Identities=19%  Similarity=0.296  Sum_probs=141.9

Q ss_pred             hcCCCcce-eeccCcceEEEEEEec---CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           23 TNNFDTSA-FMGEGSKGQMYRGRLK---NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        23 ~~~y~~~~-~lg~g~~g~V~~~~~~---~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .++|.+.+ .||+|+||.||+|...   ++..||+|+++... ....+.+.+|+.+++.++||||+++++++.       
T Consensus         8 ~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-------   80 (287)
T 1u59_A            8 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ-------   80 (287)
T ss_dssp             GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-------
T ss_pred             HHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec-------
Confidence            46677776 9999999999999853   57789999997653 234567889999999999999999999873       


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       ....+++||++++++|.+++.... ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||
T Consensus        81 -~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~Dfg  155 (287)
T 1u59_A           81 -AEALMLVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFG  155 (287)
T ss_dssp             -SSSEEEEEECCTTEEHHHHHTTCT-TTSCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEEETTEEEECCCT
T ss_pred             -CCCcEEEEEeCCCCCHHHHHHhCC-ccCCHHHHHHHHHHHHHHHHHHHH---CCEeeCCCchheEEEcCCCCEEECccc
Confidence             346899999999999999987543 468999999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccc----cccccccccccCCCCC
Q 028725          178 LPLLAENAEK----VGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~----~~~~~~~~~~~aPE~~  203 (205)
                      ++........    .....+|..|+|||..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  185 (287)
T 1u59_A          156 LSKALGADDSYYTARSAGKWPLKWYAPECI  185 (287)
T ss_dssp             TCEECTTCSCEECCCCSSCCCGGGCCHHHH
T ss_pred             ceeeeccCcceeeccccccccccccCHHHh
Confidence            9986654322    2223567899999953

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.97  E-value=2.7e-31  Score=204.22  Aligned_cols=174  Identities=18%  Similarity=0.252  Sum_probs=141.4

Q ss_pred             HHHHHHhcCCCcce-eeccCcceEEEEEEec---CCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCccccccccee
Q 028725           17 EELEEATNNFDTSA-FMGEGSKGQMYRGRLK---NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCF   90 (205)
Q Consensus        17 ~~~~~~~~~y~~~~-~lg~g~~g~V~~~~~~---~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~   90 (205)
                      .++....++|.+.+ .||+|+||.||+|...   +++.||+|+++....  ...+.+.+|+.+++.++||||+++++++.
T Consensus         9 ~~~~~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~   88 (291)
T 1xbb_A            9 KEVYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE   88 (291)
T ss_dssp             --CBCCGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEE
T ss_pred             ceeeecchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEC
Confidence            34444567899888 9999999999999643   467899999975532  23567889999999999999999999873


Q ss_pred             eecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc
Q 028725           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  170 (205)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~  170 (205)
                              .+..++++|++++++|.+++....  .+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.
T Consensus        89 --------~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nil~~~~~~  155 (291)
T 1xbb_A           89 --------AESWMLVMEMAELGPLNKYLQQNR--HVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHY  155 (291)
T ss_dssp             --------SSSEEEEEECCTTEEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTE
T ss_pred             --------CCCcEEEEEeCCCCCHHHHHHhCc--CCCHHHHHHHHHHHHHHHHHHHh---CCeEcCCCCcceEEEeCCCc
Confidence                    356899999999999999998654  68899999999999999999999   79999999999999999999


Q ss_pred             eeEcCCCchhhcccccc----cccccccccccCCCCC
Q 028725          171 AKISSYNLPLLAENAEK----VGHVTPYSGSINPTNS  203 (205)
Q Consensus       171 ~~l~Dfg~a~~~~~~~~----~~~~~~~~~~~aPE~~  203 (205)
                      ++|+|||++........    .....++..|+|||..
T Consensus       156 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  192 (291)
T 1xbb_A          156 AKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECI  192 (291)
T ss_dssp             EEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHH
T ss_pred             EEEccCCcceeeccCCCcccccccCCCCceeeChHHh
Confidence            99999999976654332    1223566889999953

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=5.2e-31  Score=206.47  Aligned_cols=170  Identities=21%  Similarity=0.376  Sum_probs=136.0

Q ss_pred             hcCCCcceeeccCcceEEEEEEecC-----CcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKN-----GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~-----~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      .++|.+.+.||+|+||.||+|....     +..||+|+++... ......+.+|+.+++.++||||+++.+.+..     
T Consensus        43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----  117 (333)
T 1mqb_A           43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISK-----  117 (333)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-----
T ss_pred             hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEec-----
Confidence            4568889999999999999998643     2359999997543 2334568899999999999999999998865     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                        ....++|||++++++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+||
T Consensus       118 --~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Df  191 (333)
T 1mqb_A          118 --YKPMMIITEYMENGALDKFLREKD-GEFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDF  191 (333)
T ss_dssp             --SSSEEEEEECCTTEEHHHHHHHTT-TCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC
T ss_pred             --CCCcEEEEeCCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChheEEECCCCcEEECCC
Confidence              567999999999999999997543 468999999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhcccccc----cccccccccccCCCCC
Q 028725          177 NLPLLAENAEK----VGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~~----~~~~~~~~~~~aPE~~  203 (205)
                      |++........    .....++..|+|||..
T Consensus       192 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  222 (333)
T 1mqb_A          192 GLSRVLEDDPEATYTTSGGKIPIRWTAPEAI  222 (333)
T ss_dssp             CC-----------------CCCGGGSCHHHH
T ss_pred             CcchhhccccccccccCCCCccccccCchhc
Confidence            99987664332    1223557789999963

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.97  E-value=6.2e-31  Score=203.83  Aligned_cols=172  Identities=14%  Similarity=0.261  Sum_probs=134.7

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCC---cCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS---HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      ..++|++.+.||+|+||.||+|.. .+++.||+|++.....   .....+.+|+.+++.++||||+++.+.+..      
T Consensus        30 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~------  103 (310)
T 2wqm_A           30 TLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIE------  103 (310)
T ss_dssp             SGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE------
T ss_pred             cccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEc------
Confidence            457899999999999999999995 4689999999975432   234568889999999999999999998876      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccC--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGH--AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                       ....+++||++.+++|.+++...  ....+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|
T Consensus       104 -~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dl~p~NIl~~~~~~~kl~D  179 (310)
T 2wqm_A          104 -DNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHS---RRVMHRDIKPANVFITATGVVKLGD  179 (310)
T ss_dssp             -TTEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECC
T ss_pred             -CCcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCcHHHEEEcCCCCEEEEe
Confidence             66899999999999999998631  22468999999999999999999999   7999999999999999999999999


Q ss_pred             CCchhhccccc-ccccccccccccCCCCC
Q 028725          176 YNLPLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ||++....... ......++..|+|||..
T Consensus       180 fg~~~~~~~~~~~~~~~~~~~~y~aPE~~  208 (310)
T 2wqm_A          180 LGLGRFFSSKTTAAHSLVGTPYYMSPERI  208 (310)
T ss_dssp             C------------------CCSSCCHHHH
T ss_pred             ccceeeecCCCccccccCCCeeEeChHHh
Confidence            99998665433 23345789999999953

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.97  E-value=5.8e-32  Score=215.21  Aligned_cols=174  Identities=14%  Similarity=0.195  Sum_probs=134.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc---CCcCHHHHHHHH---HHHhccCCCcccccccceeeec--
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK---KSHSTRNFMHHI---ELISKLRHCHLVSALGHCFECY--   93 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~---~~~~~~~~~~e~---~~l~~l~~~~i~~~~~~~~~~~--   93 (205)
                      .++|++.+.||+|+||.||+|.. .+|+.||+|++...   .....+.+.+|+   ..++.++||||+++++.+....  
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            46789999999999999999995 56999999999754   234457788999   5555668999999985443210  


Q ss_pred             ccCC----------CCC-----eEEEEEeecCCCcHHHhhccCC-----CCCCCHHHHHHHHHHHHHHHHHhhcCCCCce
Q 028725           94 FDDS----------SVS-----RIFLIFEYVPNGTLRSWISGHA-----WQSLTWTQRISAAIGVARGIQFLHTGIVPGV  153 (205)
Q Consensus        94 ~~~~----------~~~-----~~~lv~e~~~~~~L~~~~~~~~-----~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i  153 (205)
                      +...          ..+     ..+++|||+ +|+|.+++....     ...+++..++.++.|++.||.|||+   .+|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~i  227 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH---YGL  227 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHH---TTE
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHh---CCe
Confidence            1001          001     378999999 679999987432     1124457888899999999999999   799


Q ss_pred             eecCCccccEEeCCCCceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          154 FSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       154 ~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +||||||+||+++.++.++|+|||+++....  ......| ..|+|||..
T Consensus       228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~--~~~~~~g-~~y~aPE~~  274 (377)
T 3byv_A          228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA--RVVSSVS-RGFEPPELE  274 (377)
T ss_dssp             ECSCCCGGGEEECTTCCEEECCGGGCEETTC--EEECCCC-TTCCCHHHH
T ss_pred             ecCCCCHHHEEEcCCCCEEEEechhheecCC--cccCCCC-cCccChhhh
Confidence            9999999999999999999999999986443  3334567 999999964

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.97  E-value=8.2e-31  Score=203.19  Aligned_cols=167  Identities=17%  Similarity=0.331  Sum_probs=134.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      .++|++.+.||+|+||.||+|.+. ++.||+|.+...  ...+.+.+|+.+++.++||||+++++.+.+         ..
T Consensus         7 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~---------~~   74 (307)
T 2eva_A            7 YKEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACLN---------PV   74 (307)
T ss_dssp             GGGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCTT---------TT
T ss_pred             HhHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC---------Cc
Confidence            478999999999999999999975 788999998633  345678899999999999999999987743         47


Q ss_pred             EEEEeecCCCcHHHhhccCCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc-eeEcCCCchh
Q 028725          103 FLIFEYVPNGTLRSWISGHAW-QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV-AKISSYNLPL  180 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~-~~l~Dfg~a~  180 (205)
                      ++||||+++++|.+++..... ..+++..++.++.|++.||.|||+....+++||||||+||+++.++. ++|+|||++.
T Consensus        75 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~  154 (307)
T 2eva_A           75 CLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTAC  154 (307)
T ss_dssp             EEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC--
T ss_pred             EEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccc
Confidence            899999999999999986532 24788899999999999999999944358999999999999998876 7999999997


Q ss_pred             hcccccccccccccccccCCCCC
Q 028725          181 LAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ......  ....+|..|+|||..
T Consensus       155 ~~~~~~--~~~~gt~~y~aPE~~  175 (307)
T 2eva_A          155 DIQTHM--TNNKGSAAWMAPEVF  175 (307)
T ss_dssp             ------------CCTTSSCHHHH
T ss_pred             cccccc--ccCCCCCceEChhhh
Confidence            665432  234799999999964

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.97  E-value=9e-32  Score=210.50  Aligned_cols=175  Identities=21%  Similarity=0.338  Sum_probs=145.1

Q ss_pred             HHHHHhcCCCcceeeccCcceEEEEEEecC------CcEEEEEEecccCC-cCHHHHHHHHHHHhcc-CCCcccccccce
Q 028725           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLKN------GTFIAIRCLKMKKS-HSTRNFMHHIELISKL-RHCHLVSALGHC   89 (205)
Q Consensus        18 ~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~------~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l-~~~~i~~~~~~~   89 (205)
                      ++....++|++.+.||+|+||.||+|....      .+.||+|.+..... .....+.+|+.+++.+ +||||+++++++
T Consensus        40 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~  119 (333)
T 2i1m_A           40 KWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGAC  119 (333)
T ss_dssp             GGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            344556889999999999999999999642      24799999975432 3456788999999999 899999999988


Q ss_pred             eeecccCCCCCeEEEEEeecCCCcHHHhhccCC------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecC
Q 028725           90 FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNN  157 (205)
Q Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~d  157 (205)
                      ..       ....++|||++++++|.+++....            ...+++..++.++.|++.||.|||+   .+++|||
T Consensus       120 ~~-------~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~D  189 (333)
T 2i1m_A          120 TH-------GGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLAS---KNCIHRD  189 (333)
T ss_dssp             CS-------SSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSC
T ss_pred             ec-------CCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhc---CCcccCC
Confidence            65       567899999999999999987431            2357899999999999999999999   7999999


Q ss_pred             CccccEEeCCCCceeEcCCCchhhcccccc---cccccccccccCCCC
Q 028725          158 LKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTN  202 (205)
Q Consensus       158 lkp~nilv~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~  202 (205)
                      |||+||++++++.++|+|||++........   .....++..|+|||.
T Consensus       190 lkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  237 (333)
T 2i1m_A          190 VAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPES  237 (333)
T ss_dssp             CSGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHH
T ss_pred             cccceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHH
Confidence            999999999999999999999986654332   233466788999995

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.97  E-value=4.1e-31  Score=202.21  Aligned_cols=169  Identities=20%  Similarity=0.360  Sum_probs=139.5

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecC----CcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKN----GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~----~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      ..++|.+.+.||+|+||.||+|...+    +..||+|.+.... ....+.+.+|+.+++.++||||+++++++.+     
T Consensus        10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----   84 (281)
T 3cc6_A           10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-----   84 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-----
T ss_pred             cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-----
Confidence            45789999999999999999998543    3369999997553 2345678899999999999999999997643     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                         ...+++||++++++|.+++.... ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+||
T Consensus        85 ---~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Df  157 (281)
T 3cc6_A           85 ---EPTWIIMELYPYGELGHYLERNK-NSLKVLTLVLYSLQICKAMAYLES---INCVHRDIAVRNILVASPECVKLGDF  157 (281)
T ss_dssp             ---SSCEEEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEEEETTEEEECCC
T ss_pred             ---CCCEEEEecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCccceEEECCCCcEEeCcc
Confidence               34689999999999999997543 468899999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhccccc--ccccccccccccCCCC
Q 028725          177 NLPLLAENAE--KVGHVTPYSGSINPTN  202 (205)
Q Consensus       177 g~a~~~~~~~--~~~~~~~~~~~~aPE~  202 (205)
                      |++.......  ......++..|+|||.
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~y~aPE~  185 (281)
T 3cc6_A          158 GLSRYIEDEDYYKASVTRLPIKWMSPES  185 (281)
T ss_dssp             CGGGCC---------CCCCCGGGCCHHH
T ss_pred             CCCcccccccccccccCCCCcceeCchh
Confidence            9998766543  2233467789999995

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.97  E-value=4.2e-31  Score=209.31  Aligned_cols=177  Identities=14%  Similarity=0.264  Sum_probs=146.1

Q ss_pred             HHHHHHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecc
Q 028725           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (205)
Q Consensus        17 ~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   94 (205)
                      +++....++|++.+.||+|+||.||+|... ++..||+|++.... ......+.+|+.+++.++||||+++.+++.....
T Consensus        20 g~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~   99 (364)
T 3qyz_A           20 GQVFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTI   99 (364)
T ss_dssp             -CBCCCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSST
T ss_pred             cEeccccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCc
Confidence            333344678999999999999999999954 68899999997543 2334678899999999999999999998765221


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEc
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  174 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~  174 (205)
                        ......++++|++. ++|.+++...   .+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+
T Consensus       100 --~~~~~~~iv~e~~~-~~L~~~l~~~---~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~  170 (364)
T 3qyz_A          100 --EQMKDVYIVQDLME-TDLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKIC  170 (364)
T ss_dssp             --TTCCCEEEEEECCS-EEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEEC
T ss_pred             --cccceEEEEEcccC-cCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCChHhEEECCCCCEEEE
Confidence              12346899999996 4999988764   58899999999999999999999   799999999999999999999999


Q ss_pred             CCCchhhcccccc----cccccccccccCCCC
Q 028725          175 SYNLPLLAENAEK----VGHVTPYSGSINPTN  202 (205)
Q Consensus       175 Dfg~a~~~~~~~~----~~~~~~~~~~~aPE~  202 (205)
                      |||++........    .....+|..|+|||.
T Consensus       171 Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~  202 (364)
T 3qyz_A          171 DFGLARVADPDHDHTGFLTEYVATRWYRAPEI  202 (364)
T ss_dssp             CCTTCEECCGGGCBCCTTCCCCSCGGGCCHHH
T ss_pred             eCcceEecCCCCCccccccccccccCCCCCHH
Confidence            9999987665432    233589999999995

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.97  E-value=6.4e-31  Score=210.41  Aligned_cols=173  Identities=16%  Similarity=0.220  Sum_probs=138.9

Q ss_pred             hcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      ..+|++.+.||+|+||.||+|....+..+|+|.+.......    .+|+.+++.++||||+++.+++..... .......
T Consensus        39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~~----~~E~~il~~l~h~niv~l~~~~~~~~~-~~~~~~~  113 (394)
T 4e7w_A           39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFK----NRELQIMRIVKHPNVVDLKAFFYSNGD-KKDEVFL  113 (394)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTSC----CHHHHHHHTCCCTTBCCEEEEEEEESS-SSSCEEE
T ss_pred             cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcchH----HHHHHHHHhCCCCCcceEEEEEEecCC-CCCceEE
Confidence            35699999999999999999998767778888885443222    368999999999999999998865321 1223457


Q ss_pred             EEEEeecCCCcHHHhhc-cCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC-CCCceeEcCCCchh
Q 028725          103 FLIFEYVPNGTLRSWIS-GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD-QNLVAKISSYNLPL  180 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~-~~~~~~l~Dfg~a~  180 (205)
                      ++||||++++.+..... ......+++..++.++.|++.||.|||+   .+|+||||||+||+++ .++.++|+|||+++
T Consensus       114 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~  190 (394)
T 4e7w_A          114 NLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHS---IGICHRDIKPQNLLLDPPSGVLKLIDFGSAK  190 (394)
T ss_dssp             EEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             EEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHEEEcCCCCcEEEeeCCCcc
Confidence            89999998744433322 1112478999999999999999999999   7999999999999999 78999999999998


Q ss_pred             hcccccccccccccccccCCCCC
Q 028725          181 LAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ............+|..|+|||..
T Consensus       191 ~~~~~~~~~~~~~t~~y~aPE~~  213 (394)
T 4e7w_A          191 ILIAGEPNVSYICSRYYRAPELI  213 (394)
T ss_dssp             ECCTTCCCCSSCSCGGGCCHHHH
T ss_pred             cccCCCCCcccccCcCccCHHHH
Confidence            87766666667899999999953

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.97  E-value=6.8e-31  Score=211.88  Aligned_cols=171  Identities=20%  Similarity=0.283  Sum_probs=138.5

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      .+|++.+.||+|+||.||+|... +++.||+|++.....    ...+|+.+++.++||||+++.+++..... ......+
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~-~~~~~~~  128 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGE-KKDEVYL  128 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEET-TTTEEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCC-CCcceeE
Confidence            46999999999999999999964 589999999864432    22369999999999999999988865221 1223457


Q ss_pred             EEEEeecCCCcHHHhhcc--CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC-CceeEcCCCch
Q 028725          103 FLIFEYVPNGTLRSWISG--HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN-LVAKISSYNLP  179 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~-~~~~l~Dfg~a  179 (205)
                      ++||||+++ ++.+.+..  .....+++..++.++.|++.||.|||+   .+|+||||||+||+++.+ +.+||+|||++
T Consensus       129 ~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NILl~~~~~~~kl~DFG~a  204 (420)
T 1j1b_A          129 NLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSA  204 (420)
T ss_dssp             EEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred             Eeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChhhEEEeCCCCeEEeccchhh
Confidence            799999976 66665542  122478999999999999999999999   799999999999999965 67899999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +............+|..|+|||..
T Consensus       205 ~~~~~~~~~~~~~~t~~y~aPE~~  228 (420)
T 1j1b_A          205 KQLVRGEPNVSYICSRYYRAPELI  228 (420)
T ss_dssp             EECCTTCCCCSCCSCTTSCCHHHH
T ss_pred             hhcccCCCceeeeeCCCcCCHHHH
Confidence            877666555667899999999953

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.97  E-value=4e-31  Score=205.18  Aligned_cols=182  Identities=15%  Similarity=0.305  Sum_probs=136.0

Q ss_pred             HHHHHHhcCCCcceeeccCcceEEEEEEec----CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCccccccccee
Q 028725           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCF   90 (205)
Q Consensus        17 ~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~----~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~   90 (205)
                      .++....++|.+.+.||+|+||.||+|...    ++..||+|+++...  ....+.+.+|+.+++.++||||+++++++.
T Consensus        27 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~  106 (313)
T 3brb_A           27 EDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCI  106 (313)
T ss_dssp             TTTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEE
T ss_pred             HhcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEe
Confidence            344445678999999999999999999854    34589999997553  233467889999999999999999999887


Q ss_pred             eecccCCCCCeEEEEEeecCCCcHHHhhcc----CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC
Q 028725           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISG----HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD  166 (205)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~----~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~  166 (205)
                      ....  ......++++|++++++|.+++..    .....+++..++.++.|++.||.|||+   .+++||||||+||+++
T Consensus       107 ~~~~--~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dikp~NIli~  181 (313)
T 3brb_A          107 EMSS--QGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN---RNFLHRDLAARNCMLR  181 (313)
T ss_dssp             C---------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHT---TTCCCCCCSGGGEEEC
T ss_pred             eccc--cCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEc
Confidence            5221  112356999999999999999842    222468999999999999999999999   7999999999999999


Q ss_pred             CCCceeEcCCCchhhccccc---ccccccccccccCCCCC
Q 028725          167 QNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       167 ~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      .++.++|+|||++.......   ......++..|+|||..
T Consensus       182 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  221 (313)
T 3brb_A          182 DDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESL  221 (313)
T ss_dssp             TTSCEEECSCSCC----------------CCGGGSCHHHH
T ss_pred             CCCcEEEeecCcceecccccccCcccccCCCccccCchhh
Confidence            99999999999998665432   22234677889999963

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.97  E-value=1.2e-30  Score=219.28  Aligned_cols=161  Identities=20%  Similarity=0.308  Sum_probs=133.6

Q ss_pred             eeccCcceEEEEEEec---CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEE
Q 028725           31 FMGEGSKGQMYRGRLK---NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIF  106 (205)
Q Consensus        31 ~lg~g~~g~V~~~~~~---~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~  106 (205)
                      .||+|+||.||+|.+.   ++..||+|+++... ....+.+.+|+.+++.++||||+++++++..        +..++||
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~--------~~~~lv~  414 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA--------EALMLVM  414 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES--------SSEEEEE
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc--------CCeEEEE
Confidence            7999999999999864   45679999997653 3467889999999999999999999998753        3589999


Q ss_pred             eecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccccc
Q 028725          107 EYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE  186 (205)
Q Consensus       107 e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~  186 (205)
                      ||+++++|.+++.... ..+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||+++......
T Consensus       415 E~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~~L~~LH~---~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~  490 (613)
T 2ozo_A          415 EMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLEE---KNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADD  490 (613)
T ss_dssp             ECCTTCBHHHHHTTCT-TTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC---
T ss_pred             EeCCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHH---CCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCC
Confidence            9999999999997543 468999999999999999999999   799999999999999999999999999998765433


Q ss_pred             cc----ccccccccccCCCCC
Q 028725          187 KV----GHVTPYSGSINPTNS  203 (205)
Q Consensus       187 ~~----~~~~~~~~~~aPE~~  203 (205)
                      ..    ....++..|+|||..
T Consensus       491 ~~~~~~~~~~~~~~y~APE~~  511 (613)
T 2ozo_A          491 SYYTARSAGKWPLKWYAPECI  511 (613)
T ss_dssp             -----------CCTTSCHHHH
T ss_pred             ceeeeccCCCCccceeCHhhh
Confidence            21    122456789999953

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=1.6e-30  Score=200.25  Aligned_cols=170  Identities=19%  Similarity=0.284  Sum_probs=140.4

Q ss_pred             cCCCcceeeccCcceEEEEEEec-C---CcEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-N---GTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~---~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      -.|...+.||+|+||.||+|.+. +   +..+|+|.+..... ...+.+.+|+.+++.++||||+++.+++.+      .
T Consensus        21 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~------~   94 (298)
T 3pls_A           21 VVTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLP------P   94 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECC------S
T ss_pred             eEEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEec------C
Confidence            34667799999999999999853 2   23799999975432 345678899999999999999999998865      1


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....++++|++.+++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+
T Consensus        95 ~~~~~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~  170 (298)
T 3pls_A           95 EGLPHVLLPYMCHGDLLQFIRSPQ-RNPTVKDLISFGLQVARGMEYLAE---QKFVHRDLAARNCMLDESFTVKVADFGL  170 (298)
T ss_dssp             SSCCEEEECCCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECCTTS
T ss_pred             CCCcEEEEecccCCCHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCcEEeCcCCC
Confidence            334589999999999999997643 468899999999999999999999   7999999999999999999999999999


Q ss_pred             hhhccccc-----ccccccccccccCCCCC
Q 028725          179 PLLAENAE-----KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~-----~~~~~~~~~~~~aPE~~  203 (205)
                      ++......     ......++..|+|||..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  200 (298)
T 3pls_A          171 ARDILDREYYSVQQHRHARLPVKWTALESL  200 (298)
T ss_dssp             SCTTTTGGGGCSCCSSCTTCGGGGSCHHHH
T ss_pred             cccccCCcccccccCcCCCCCccccChhhh
Confidence            97654432     22335778899999964

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.9e-31  Score=208.53  Aligned_cols=182  Identities=15%  Similarity=0.211  Sum_probs=135.6

Q ss_pred             HHHHHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccC-CCcccccccceeeeccc
Q 028725           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFD   95 (205)
Q Consensus        18 ~~~~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~   95 (205)
                      .+.....+|++.+.||+|+||.||+|... +++.||+|++..........+.+|+.++..+. ||||+++++.+......
T Consensus        22 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~  101 (337)
T 3ll6_A           22 TVELGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEE  101 (337)
T ss_dssp             EEEETTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTT
T ss_pred             eeeccCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccc
Confidence            33344568999999999999999999954 68999999996665555677889999999996 99999999887532221


Q ss_pred             -CCCCCeEEEEEeecCCCcHHHhhcc-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCc--eeecCCccccEEeCCCCce
Q 028725           96 -DSSVSRIFLIFEYVPNGTLRSWISG-HAWQSLTWTQRISAAIGVARGIQFLHTGIVPG--VFSNNLKITDILLDQNLVA  171 (205)
Q Consensus        96 -~~~~~~~~lv~e~~~~~~L~~~~~~-~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~--i~h~dlkp~nilv~~~~~~  171 (205)
                       .......++++|++. |+|.+++.. .....+++..++.++.|++.||.|||+   .+  ++|+||||+||+++.++.+
T Consensus       102 ~~~~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~~~ivH~Dikp~NIl~~~~~~~  177 (337)
T 3ll6_A          102 SDTGQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHR---QKPPIIHRDLKVENLLLSNQGTI  177 (337)
T ss_dssp             STTSSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHT---SSSCCBCCCCCGGGCEECTTSCE
T ss_pred             cccCCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh---CCCCEEEccCCcccEEECCCCCE
Confidence             123556899999995 699988864 122468999999999999999999999   68  9999999999999999999


Q ss_pred             eEcCCCchhhccccccc-------------ccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAEKV-------------GHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~~-------------~~~~~~~~~~aPE~~  203 (205)
                      +|+|||++.........             ....+|..|+|||..
T Consensus       178 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~  222 (337)
T 3ll6_A          178 KLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEII  222 (337)
T ss_dssp             EBCCCTTCBCCSSCC------------------------------
T ss_pred             EEecCccceeccccCcccccccccccchhhccccCCCCcCChhhh
Confidence            99999999876643221             134689999999975

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.97  E-value=9.1e-31  Score=204.66  Aligned_cols=168  Identities=19%  Similarity=0.361  Sum_probs=135.0

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCc----EEEEEEeccc-CCcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGT----FIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~----~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      .++|++.+.||+|+||.||+|.+. +++    +|++|.+... .......+.+|+.+++.++||||+++++++..     
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----   88 (327)
T 3lzb_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT-----   88 (327)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEES-----
T ss_pred             HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEec-----
Confidence            478999999999999999999954 444    4577777543 34567789999999999999999999998864     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                         ...+++++++.+++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+||
T Consensus        89 ---~~~~~v~~~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kL~Df  161 (327)
T 3lzb_A           89 ---STVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDF  161 (327)
T ss_dssp             ---SSEEEEECCCSSCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCT
T ss_pred             ---CCceEEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhh---CCCcCCCCCHHHEEEcCCCCEEEccC
Confidence               34789999999999999997654 468999999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhccccccc---ccccccccccCCCC
Q 028725          177 NLPLLAENAEKV---GHVTPYSGSINPTN  202 (205)
Q Consensus       177 g~a~~~~~~~~~---~~~~~~~~~~aPE~  202 (205)
                      |+++........   ....+|..|+|||.
T Consensus       162 G~a~~~~~~~~~~~~~~~~~t~~y~aPE~  190 (327)
T 3lzb_A          162 GLAKLLGAEEKEYHAEGGKVPIKWMALES  190 (327)
T ss_dssp             TC----------------CCCGGGSCHHH
T ss_pred             cceeEccCccccccccCCCccccccCHHH
Confidence            999876554322   22356778999995

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.97  E-value=4.4e-31  Score=208.26  Aligned_cols=172  Identities=12%  Similarity=0.146  Sum_probs=138.2

Q ss_pred             hcCCCcceeeccCcceEEEEEEecC---------CcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeee-
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKN---------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC-   92 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~---------~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-   92 (205)
                      .++|++.+.||+|+||.||+|....         ++.||+|++...     ..+.+|+.+++.++||||+++++..... 
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~  115 (352)
T 2jii_A           41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP  115 (352)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred             CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence            4789999999999999999999653         788999999743     4678899999999999999843321100 


Q ss_pred             --------cccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEE
Q 028725           93 --------YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL  164 (205)
Q Consensus        93 --------~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nil  164 (205)
                              ..........++|||++ +++|.+++.......+++..++.++.|++.||.|||+   .+++||||||+||+
T Consensus       116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dikp~NIl  191 (352)
T 2jii_A          116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHE---NEYVHGNVTAENIF  191 (352)
T ss_dssp             TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCGGGEE
T ss_pred             ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCHHHEE
Confidence                    00001246789999999 8999999987644579999999999999999999999   79999999999999


Q ss_pred             eCCCC--ceeEcCCCchhhcccccc--------cccccccccccCCCCC
Q 028725          165 LDQNL--VAKISSYNLPLLAENAEK--------VGHVTPYSGSINPTNS  203 (205)
Q Consensus       165 v~~~~--~~~l~Dfg~a~~~~~~~~--------~~~~~~~~~~~aPE~~  203 (205)
                      ++.++  .++|+|||+++.......        .....+|..|+|||..
T Consensus       192 ~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  240 (352)
T 2jii_A          192 VDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLH  240 (352)
T ss_dssp             EETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHH
T ss_pred             EcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHH
Confidence            99988  999999999976654332        1334899999999964

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.97  E-value=9.7e-31  Score=205.83  Aligned_cols=172  Identities=10%  Similarity=0.115  Sum_probs=136.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEec----CCcEEEEEEecccCCc-----------CHHHHHHHHHHHhccCCCccccccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSH-----------STRNFMHHIELISKLRHCHLVSALG   87 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~----~~~~vaiK~~~~~~~~-----------~~~~~~~e~~~l~~l~~~~i~~~~~   87 (205)
                      .++|++.+.||+|+||.||+|...    ++..+|+|++......           ....+.+|+..++.++||||+++++
T Consensus        36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~  115 (345)
T 2v62_A           36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG  115 (345)
T ss_dssp             SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred             CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence            468999999999999999999964    5778999998755321           1223567888899999999999999


Q ss_pred             ceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC
Q 028725           88 HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ  167 (205)
Q Consensus        88 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~  167 (205)
                      .+....   ......+++||++ +++|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||+++.
T Consensus       116 ~~~~~~---~~~~~~~lv~e~~-~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~  186 (345)
T 2v62_A          116 SGLTEF---KGRSYRFMVMERL-GIDLQKISGQNG--TFKKSTVLQLGIRMLDVLEYIHE---NEYVHGDIKAANLLLGY  186 (345)
T ss_dssp             EEEEES---SSCEEEEEEEECE-EEEHHHHCBGGG--BCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEES
T ss_pred             cccccc---CCCcEEEEEEecc-CCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCcCHHHEEEcc
Confidence            886522   2246789999999 999999998654  78999999999999999999999   79999999999999998


Q ss_pred             CC--ceeEcCCCchhhcccccc--------cccccccccccCCCCC
Q 028725          168 NL--VAKISSYNLPLLAENAEK--------VGHVTPYSGSINPTNS  203 (205)
Q Consensus       168 ~~--~~~l~Dfg~a~~~~~~~~--------~~~~~~~~~~~aPE~~  203 (205)
                      ++  .++|+|||+++.......        .....+|..|+|||..
T Consensus       187 ~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  232 (345)
T 2v62_A          187 KNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAH  232 (345)
T ss_dssp             SSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHH
T ss_pred             CCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHh
Confidence            77  999999999976654321        1345899999999963

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.97  E-value=1.8e-30  Score=201.65  Aligned_cols=173  Identities=16%  Similarity=0.276  Sum_probs=137.0

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecc-------
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYF-------   94 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~-------   94 (205)
                      .++|++.+.||+|+||.||+|... +++.||+|++........+.+.+|+.+++.++||||+++++++.....       
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   89 (320)
T 2i6l_A           10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG   89 (320)
T ss_dssp             TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred             CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence            578999999999999999999965 589999999976655566788899999999999999999887643110       


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC-CCCceeE
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD-QNLVAKI  173 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~-~~~~~~l  173 (205)
                      ........+++||++. ++|.+++...   .+++..++.++.|++.||.|||+   .+++||||||+||+++ +++.++|
T Consensus        90 ~~~~~~~~~lv~e~~~-~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~kl  162 (320)
T 2i6l_A           90 SLTELNSVYIVQEYME-TDLANVLEQG---PLLEEHARLFMYQLLRGLKYIHS---ANVLHRDLKPANLFINTEDLVLKI  162 (320)
T ss_dssp             -CCSCSEEEEEEECCS-EEHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTTEEEE
T ss_pred             cccccCceeEEeeccC-CCHHHHhhcC---CccHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCeEEE
Confidence            0122467899999997 5999998653   58899999999999999999999   7999999999999997 5679999


Q ss_pred             cCCCchhhcccc----cccccccccccccCCCC
Q 028725          174 SSYNLPLLAENA----EKVGHVTPYSGSINPTN  202 (205)
Q Consensus       174 ~Dfg~a~~~~~~----~~~~~~~~~~~~~aPE~  202 (205)
                      +|||+++.....    .......++..|+|||.
T Consensus       163 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  195 (320)
T 2i6l_A          163 GDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRL  195 (320)
T ss_dssp             CCCTTCBCC--------CCCGGGSCCTTCCHHH
T ss_pred             ccCccccccCCCcccccccccccccccccCcHH
Confidence            999999866532    22334577899999995

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.97  E-value=7.6e-31  Score=223.00  Aligned_cols=168  Identities=16%  Similarity=0.248  Sum_probs=138.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEec--CCcEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK--NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~--~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|++.+.||+|+||.||+|...  +++.||+|++..... .....+.+|+.+++.++||||+++++++.....  ...
T Consensus        79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~~  156 (681)
T 2pzi_A           79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDR--HGD  156 (681)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECT--TSC
T ss_pred             CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCC--CCC
Confidence            478999999999999999999964  589999999864432 334567889999999999999999998876321  112


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...|+||||+++++|.+++..    .+++..++.++.|++.+|.|||+   .+|+||||||+||+++.+ .++|+|||++
T Consensus       157 ~~~~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH~---~giiHrDlkp~NIll~~~-~~kl~DFG~a  228 (681)
T 2pzi_A          157 PVGYIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLHS---IGLVYNDLKPENIMLTEE-QLKLIDLGAV  228 (681)
T ss_dssp             EEEEEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECSS-CEEECCCTTC
T ss_pred             ceeEEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHH---CCCeecccChHHeEEeCC-cEEEEecccc
Confidence            236999999999999987654    68899999999999999999999   799999999999999985 8999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +.....   ....||++|+|||+.
T Consensus       229 ~~~~~~---~~~~gt~~y~aPE~~  249 (681)
T 2pzi_A          229 SRINSF---GYLYGTPGFQAPEIV  249 (681)
T ss_dssp             EETTCC---SCCCCCTTTSCTTHH
T ss_pred             hhcccC---CccCCCccccCHHHH
Confidence            876553   345799999999963

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.97  E-value=5.6e-31  Score=208.91  Aligned_cols=170  Identities=14%  Similarity=0.236  Sum_probs=124.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|++.+.||+|+||.||+|.. .+|+.||+|++....  ......+.+|+.+++.++||||+++.+++...... ...
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~-~~~  106 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSL-EEF  106 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSG-GGC
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCcc-ccC
Confidence            57899999999999999999994 568999999996542  23356778999999999999999999987542110 112


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++++|++ +++|.+++..   ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++
T Consensus       107 ~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kL~DFG~a  179 (367)
T 2fst_X          107 NDVYLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLA  179 (367)
T ss_dssp             CCCEEEEECC-CEECC--------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECC----
T ss_pred             CeEEEEeccc-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHhhEEECCCCCEEEeecccc
Confidence            4579999999 6799998865   368999999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      +.....  .....+|.+|+|||.
T Consensus       180 ~~~~~~--~~~~~~t~~y~aPE~  200 (367)
T 2fst_X          180 RHTADE--MTGYVATRWYRAPEI  200 (367)
T ss_dssp             -------------CCCTTCCHHH
T ss_pred             cccccc--CCCcCcCcCccChHH
Confidence            876543  334689999999995

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.97  E-value=2.2e-30  Score=209.39  Aligned_cols=166  Identities=17%  Similarity=0.223  Sum_probs=140.0

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhcc------CCCcccccccceeeeccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL------RHCHLVSALGHCFECYFD   95 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~~~~~   95 (205)
                      ..+|++.+.||+|+||.||+|... +++.||+|++... ......+.+|+.+++.+      .|+||+++++.+..    
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~----  170 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTF----  170 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEE----
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeeccc----
Confidence            457999999999999999999854 5889999999743 23345566788877776      46799999998876    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc--eeE
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV--AKI  173 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~--~~l  173 (205)
                         ....+++||++. ++|.+++.......+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.  ++|
T Consensus       171 ---~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NILl~~~~~~~vkL  243 (429)
T 3kvw_A          171 ---RNHICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHK---NRIIHCDLKPENILLKQQGRSGIKV  243 (429)
T ss_dssp             ---TTEEEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---HTEECSCCSGGGEEESSTTSCCEEE
T ss_pred             ---CCeEEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEEccCCCcceEE
Confidence               678999999996 599999887665579999999999999999999999   79999999999999998887  999


Q ss_pred             cCCCchhhcccccccccccccccccCCCC
Q 028725          174 SSYNLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       174 ~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      +|||++.....  ......+|..|+|||.
T Consensus       244 ~DFG~a~~~~~--~~~~~~gt~~y~aPE~  270 (429)
T 3kvw_A          244 IDFGSSCYEHQ--RVYTYIQSRFYRAPEV  270 (429)
T ss_dssp             CCCTTCEETTC--CCCSSCSCGGGCCHHH
T ss_pred             eecccceecCC--cccccCCCCCccChHH
Confidence            99999976543  3334689999999996

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.97  E-value=1.4e-30  Score=203.33  Aligned_cols=171  Identities=22%  Similarity=0.329  Sum_probs=138.9

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecc
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   94 (205)
                      ..++|++.+.||+|+||.||+|...      ++..||+|++.... ......+.+|+.+++.++||||+++++++..   
T Consensus        28 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---  104 (327)
T 2yfx_A           28 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQ---  104 (327)
T ss_dssp             CGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS---
T ss_pred             ChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcC---
Confidence            4578999999999999999999842      47789999996442 3345678889999999999999999998865   


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCCC-----CCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC--
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHAW-----QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ--  167 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-----~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~--  167 (205)
                          ....+++||++++++|.+++.....     ..+++..++.++.|++.||.|||+   .+++||||||+||+++.  
T Consensus       105 ----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~---~~i~H~dlkp~NIli~~~~  177 (327)
T 2yfx_A          105 ----SLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE---NHFIHRDIAARNCLLTCPG  177 (327)
T ss_dssp             ----SSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSS
T ss_pred             ----CCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhh---CCeecCcCCHhHEEEecCC
Confidence                5568999999999999999975421     348899999999999999999999   79999999999999994  


Q ss_pred             -CCceeEcCCCchhhccccc---ccccccccccccCCCC
Q 028725          168 -NLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  202 (205)
Q Consensus       168 -~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~  202 (205)
                       +..++|+|||++.......   ......++..|+|||.
T Consensus       178 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  216 (327)
T 2yfx_A          178 PGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEA  216 (327)
T ss_dssp             TTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHH
T ss_pred             CcceEEECccccccccccccccccCCCcCCCcceeCHhH
Confidence             4569999999997654432   2233577889999995

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.97  E-value=2.1e-30  Score=208.04  Aligned_cols=169  Identities=20%  Similarity=0.275  Sum_probs=126.4

Q ss_pred             cCCCc-ceeeccCcceEEEEEEec---CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDT-SAFMGEGSKGQMYRGRLK---NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~-~~~lg~g~~g~V~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      +.|++ ++.||+|+||.||+|.+.   +++.||+|++...  .....+.+|+.+++.++||||+++.+++..     ...
T Consensus        20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~~   92 (405)
T 3rgf_A           20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT--GISMSACREIALLRELKHPNVISLQKVFLS-----HAD   92 (405)
T ss_dssp             HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSS--SCCHHHHHHHHHHHHCCCTTBCCCCEEEEE-----TTT
T ss_pred             hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCC--CCCHHHHHHHHHHHhcCCCCeeeEeeEEec-----CCC
Confidence            44665 568999999999999965   4788999999643  234567889999999999999999998865     235


Q ss_pred             CeEEEEEeecCCCcHHHhhccC-------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEe----CCC
Q 028725          100 SRIFLIFEYVPNGTLRSWISGH-------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL----DQN  168 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~-------~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv----~~~  168 (205)
                      ...++||||+.+ +|.+++...       ....+++..++.++.|++.||.|||+   .+|+||||||+||++    +.+
T Consensus        93 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivH~Dlkp~NIll~~~~~~~  168 (405)
T 3rgf_A           93 RKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPER  168 (405)
T ss_dssp             TEEEEEEECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECCSSTTT
T ss_pred             CeEEEEEeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCEeCCCcCHHHeEEecCCCCC
Confidence            689999999965 888877521       11248899999999999999999999   799999999999999    677


Q ss_pred             CceeEcCCCchhhccccc----ccccccccccccCCCCC
Q 028725          169 LVAKISSYNLPLLAENAE----KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       169 ~~~~l~Dfg~a~~~~~~~----~~~~~~~~~~~~aPE~~  203 (205)
                      +.++|+|||+++......    ......+|..|+|||..
T Consensus       169 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~  207 (405)
T 3rgf_A          169 GRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELL  207 (405)
T ss_dssp             TCEEECCTTCCC----------------CCCTTCCHHHH
T ss_pred             CcEEEEECCCceecCCCCcccccCCCceecCcccCchhh
Confidence            899999999998766432    23345889999999953

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.97  E-value=2.3e-30  Score=218.15  Aligned_cols=160  Identities=19%  Similarity=0.278  Sum_probs=133.2

Q ss_pred             eeeccCcceEEEEEEec---CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRLK---NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~---~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||+|+||.||+|.+.   +++.||+|+++...  ....+.+.+|+.+++.++||||+++++++..        ...++
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~--------~~~~l  446 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA--------ESWML  446 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES--------SSEEE
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec--------CCEEE
Confidence            47999999999999753   46789999997643  2345789999999999999999999998743        35889


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ||||+++++|.+++....  .+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||+++....
T Consensus       447 v~E~~~~g~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~yLH~---~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~  521 (635)
T 4fl3_A          447 VMEMAELGPLNKYLQQNR--HVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA  521 (635)
T ss_dssp             EEECCTTEEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC
T ss_pred             EEEccCCCCHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHHHH---CCEeCCCCChHhEEEeCCCCEEEEEcCCcccccc
Confidence            999999999999997654  68999999999999999999999   7999999999999999999999999999987765


Q ss_pred             ccc----cccccccccccCCCC
Q 028725          185 AEK----VGHVTPYSGSINPTN  202 (205)
Q Consensus       185 ~~~----~~~~~~~~~~~aPE~  202 (205)
                      ...    .....+|..|+|||.
T Consensus       522 ~~~~~~~~~~~~~t~~y~APE~  543 (635)
T 4fl3_A          522 DENYYKAQTHGKWPVKWYAPEC  543 (635)
T ss_dssp             -------------CGGGSCHHH
T ss_pred             CccccccccCCCCceeeeChhh
Confidence            432    222356788999995

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.97  E-value=2.5e-30  Score=203.71  Aligned_cols=171  Identities=17%  Similarity=0.294  Sum_probs=141.3

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|++.+.||+|+||.||+|... +|+.||+|++.... ......+.+|+.+++.++||||+++++++....+  ....
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--~~~~   87 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSF--ENFN   87 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCS--TTCC
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeeccccc--Cccc
Confidence            578999999999999999999964 68999999996443 2334567889999999999999999987764221  1235


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++++|++. ++|.+++...   .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++.
T Consensus        88 ~~~lv~e~~~-~~L~~~~~~~---~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~  160 (353)
T 2b9h_A           88 EVYIIQELMQ-TDLHRVISTQ---MLSDDHIQYFIYQTLRAVKVLHG---SNVIHRDLKPSNLLINSNCDLKVCDFGLAR  160 (353)
T ss_dssp             CEEEEECCCS-EEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             eEEEEEeccC-ccHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEEcCCCcEEEEeccccc
Confidence            7899999996 5999988763   58899999999999999999999   799999999999999999999999999997


Q ss_pred             hcccccc-----------cccccccccccCCCC
Q 028725          181 LAENAEK-----------VGHVTPYSGSINPTN  202 (205)
Q Consensus       181 ~~~~~~~-----------~~~~~~~~~~~aPE~  202 (205)
                      .......           .....+|..|+|||.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~  193 (353)
T 2b9h_A          161 IIDESAADNSEPTGQQSGMVEFVATRWYRAPEV  193 (353)
T ss_dssp             ECC----------------CCCCCCGGGCCHHH
T ss_pred             ccccccccccCccccccchhhccccccccCCee
Confidence            6654321           122478999999995

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.97  E-value=8e-31  Score=203.54  Aligned_cols=178  Identities=13%  Similarity=0.245  Sum_probs=142.2

Q ss_pred             cccCHHHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccC--CcCHHHHHHHHHHHhccC--CCccccccc
Q 028725           12 RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLR--HCHLVSALG   87 (205)
Q Consensus        12 ~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~--~~~i~~~~~   87 (205)
                      ..++...+....++|++.+.||+|+||.||++...+++.||+|++....  ......+.+|+.++..++  ||||+++.+
T Consensus        16 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~   95 (313)
T 3cek_A           16 ENLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYD   95 (313)
T ss_dssp             ----CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEE
T ss_pred             CCCCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEE
Confidence            3444455556678899999999999999999998789999999997543  234567889999999997  599999999


Q ss_pred             ceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC
Q 028725           88 HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ  167 (205)
Q Consensus        88 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~  167 (205)
                      ++..       ....+++|| +.+++|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||++++
T Consensus        96 ~~~~-------~~~~~lv~e-~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~  162 (313)
T 3cek_A           96 YEIT-------DQYIYMVME-CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIVD  162 (313)
T ss_dssp             EEEC-------SSEEEEEEC-CCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEET
T ss_pred             Eeec-------CCEEEEEEe-cCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcccEEEEC
Confidence            8876       568999999 56789999998654  68899999999999999999999   79999999999999965


Q ss_pred             CCceeEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          168 NLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       168 ~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                       +.++|+|||++........   .....++..|+|||..
T Consensus       163 -~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  200 (313)
T 3cek_A          163 -GMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAI  200 (313)
T ss_dssp             -TEEEECCCSSSCC--------------CCGGGCCHHHH
T ss_pred             -CeEEEeeccccccccCccccccccCCCCCCCcCCHHHH
Confidence             8999999999986654332   2335789999999964

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.97  E-value=2.7e-30  Score=201.74  Aligned_cols=171  Identities=11%  Similarity=0.201  Sum_probs=125.2

Q ss_pred             HhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC-cCHHHHHHHHH-HHhccCCCcccccccceeeecccCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIE-LISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~~e~~-~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ..++|++.+.||+|+||.||+|... +++.||+|++..... .....+..|.. +++.++||||+++++++..       
T Consensus        20 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~-------   92 (327)
T 3aln_A           20 TAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFR-------   92 (327)
T ss_dssp             CSCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEEC-------
T ss_pred             CHHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEe-------
Confidence            3588999999999999999999964 689999999975532 22344555555 7778899999999998876       


Q ss_pred             CCeEEEEEeecCCCcHHHhhcc---CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-ceeecCCccccEEeCCCCceeEc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISG---HAWQSLTWTQRISAAIGVARGIQFLHTGIVP-GVFSNNLKITDILLDQNLVAKIS  174 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~-~i~h~dlkp~nilv~~~~~~~l~  174 (205)
                      .+..+++||++.+ +|.+++..   .....+++..+..++.|++.||.|||+   . +++||||||+||+++.++.++|+
T Consensus        93 ~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~~ivH~dlkp~NIll~~~~~~kl~  168 (327)
T 3aln_A           93 EGDCWICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKE---NLKIIHRDIKPSNILLDRSGNIKLC  168 (327)
T ss_dssp             SSEEEEEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHH---HHSCCCSCCCGGGEEEETTTEEEEC
T ss_pred             CCceEEEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhc---cCCEeECCCCHHHEEEcCCCCEEEc
Confidence            5689999999975 88887752   222478999999999999999999999   7 99999999999999999999999


Q ss_pred             CCCchhhcccccccccccccccccCCCCC
Q 028725          175 SYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       175 Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |||+++............+|..|+|||..
T Consensus       169 Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~  197 (327)
T 3aln_A          169 DFGISGQLVDSIAKTRDAGCRPYMAPERI  197 (327)
T ss_dssp             CCSSSCC----------------------
T ss_pred             cCCCceecccccccccCCCCccccCceee
Confidence            99999877665555556899999999975

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.97  E-value=8e-30  Score=196.02  Aligned_cols=170  Identities=14%  Similarity=0.201  Sum_probs=137.8

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ...++|++.+.||+|+||.||+|.. .+++.||+|++....  ....+.+|+.+++.++|++++..+..+..      ..
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~------~~   77 (296)
T 4hgt_A            6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGA------EG   77 (296)
T ss_dssp             -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEE------ET
T ss_pred             ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHHhcCCCCCCeeeeecC------CC
Confidence            3457899999999999999999995 568999999875443  22357789999999999888877766643      25


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEe---CCCCceeEcCC
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL---DQNLVAKISSY  176 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv---~~~~~~~l~Df  176 (205)
                      ...+++||++ +++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||++   +.++.++|+||
T Consensus        78 ~~~~lv~e~~-~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~~~~~kL~Df  152 (296)
T 4hgt_A           78 DYNVMVMELL-GPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDF  152 (296)
T ss_dssp             TEEEEEEECC-CCBHHHHHHHTT-SCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECCGGGTTCEEECCC
T ss_pred             CceEEEEEcc-CCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeeeeccCCCCeEEEecC
Confidence            6789999999 889999987433 368999999999999999999999   799999999999999   78899999999


Q ss_pred             Cchhhcccccc--------cccccccccccCCCCC
Q 028725          177 NLPLLAENAEK--------VGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~~--------~~~~~~~~~~~aPE~~  203 (205)
                      |+++.......        .....+|..|+|||..
T Consensus       153 g~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  187 (296)
T 4hgt_A          153 GLAKKYRDARTHQHIPYRENKNLTGTARYASINTH  187 (296)
T ss_dssp             TTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHH
T ss_pred             ccceeccCcccCccCCCCcccccCCCccccchHHh
Confidence            99987665432        2345899999999964

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.97  E-value=9.7e-30  Score=195.65  Aligned_cols=169  Identities=14%  Similarity=0.200  Sum_probs=141.8

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ..++|++.+.||+|+||.||+|.. .+++.||+|++....  ....+.+|+.+++.++|++++..+..+..      ...
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~------~~~   78 (296)
T 3uzp_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGA------EGD   78 (296)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS--SCCHHHHHHHHHHHHTTSTTCCCEEEEEE------ETT
T ss_pred             eccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc--chhHHHHHHHHHHHhhcCCCCCccccccC------CCC
Confidence            357899999999999999999995 579999999986543  33468889999999999888777665543      256


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC---CCCceeEcCCC
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD---QNLVAKISSYN  177 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~---~~~~~~l~Dfg  177 (205)
                      ..+++||++ +++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++   +++.++|+|||
T Consensus        79 ~~~lv~e~~-~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg  153 (296)
T 3uzp_A           79 YNVMVMELL-GPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFG  153 (296)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECCGGGTTCEEECCCT
T ss_pred             ceEEEEEec-CCCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHeEEecCCCCCeEEEeeCC
Confidence            789999999 889999997433 468999999999999999999999   7999999999999994   78899999999


Q ss_pred             chhhcccccc--------cccccccccccCCCCC
Q 028725          178 LPLLAENAEK--------VGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~--------~~~~~~~~~~~aPE~~  203 (205)
                      ++........        .....+|..|+|||..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  187 (296)
T 3uzp_A          154 LAKKYRDARTHQHIPYRENKNLTGTARYASINTH  187 (296)
T ss_dssp             TCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHH
T ss_pred             CcccccccccccccccccccccccccccCChhhh
Confidence            9987665432        2445899999999964

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.97  E-value=1.9e-30  Score=207.13  Aligned_cols=171  Identities=19%  Similarity=0.245  Sum_probs=140.0

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccC--------CCcccccccceeeec
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR--------HCHLVSALGHCFECY   93 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~--------~~~i~~~~~~~~~~~   93 (205)
                      .++|++.+.||+|+||.||+|.. .+++.||+|+++.. ....+.+.+|+.+++.++        |+||+++++.+....
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~  114 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG  114 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence            47899999999999999999995 46889999999633 234567788999999986        788999998876321


Q ss_pred             ccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-ceeecCCccccEEeCCCC---
Q 028725           94 FDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP-GVFSNNLKITDILLDQNL---  169 (205)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~-~i~h~dlkp~nilv~~~~---  169 (205)
                         ......++|||++ ++++.+.+.......+++..++.++.|++.||.|||+   . +|+||||||+||+++.++   
T Consensus       115 ---~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~---~~givHrDikp~NIll~~~~~~~  187 (397)
T 1wak_A          115 ---VNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHT---KCRIIHTDIKPENILLSVNEQYI  187 (397)
T ss_dssp             ---TTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH---TTCEECCCCSGGGEEECCCHHHH
T ss_pred             ---CCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHeeEeccchhh
Confidence               1245789999999 5566666665444579999999999999999999999   7 999999999999999775   


Q ss_pred             ----------------------------------------------ceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          170 ----------------------------------------------VAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       170 ----------------------------------------------~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                                                                    .++|+|||++......  .....+|..|+|||..
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~--~~~~~gt~~y~aPE~~  265 (397)
T 1wak_A          188 RRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH--FTEDIQTRQYRSLEVL  265 (397)
T ss_dssp             HHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC--SCSCCSCGGGCCHHHH
T ss_pred             hhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc--CccCCCCCcccCChhh
Confidence                                                          7999999999876543  3345899999999953

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.97  E-value=4.1e-30  Score=204.16  Aligned_cols=170  Identities=14%  Similarity=0.229  Sum_probs=136.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|.+.+.||+|+||.||+|... +|+.||+|++.....  .....+.+|+.+++.++||||+++++++...... ...
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~-~~~  119 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSL-RNF  119 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSS-TTC
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCc-ccc
Confidence            578999999999999999999954 689999999975432  2356788999999999999999999988652110 011


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...+++||++. ++|.+.+..    .+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++
T Consensus       120 ~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kL~Dfg~a  191 (371)
T 4exu_A          120 YDFYLVMPFMQ-TDLQKIMGM----EFSEEKIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDFGLA  191 (371)
T ss_dssp             CCCEEEEECCC-EEHHHHTTS----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECSTTCC
T ss_pred             eeEEEEEcccc-ccHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCcCHHHeEECCCCCEEEEecCcc
Confidence            23489999996 588887743    58899999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +.....  .....+|..|+|||..
T Consensus       192 ~~~~~~--~~~~~~t~~y~aPE~~  213 (371)
T 4exu_A          192 RHADAE--MTGYVVTRWYRAPEVI  213 (371)
T ss_dssp             ----------CTTCCCTTSCHHHH
T ss_pred             cccccC--cCCcccCccccCHHHh
Confidence            866543  3345789999999963

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.97  E-value=1.2e-30  Score=207.23  Aligned_cols=174  Identities=7%  Similarity=-0.001  Sum_probs=122.9

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCC---cCHHHHHHHHHHHhcc--CCCccccccccee---eec
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELISKL--RHCHLVSALGHCF---ECY   93 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l--~~~~i~~~~~~~~---~~~   93 (205)
                      ..+|.+.+.||+|+||.||+|... +++.||+|++.....   ...+.+.+|+.+++.+  +||||++++..+.   +..
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~  140 (371)
T 3q60_A           61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV  140 (371)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred             ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence            345999999999999999999964 689999999986543   2345566775444444  6999888554332   100


Q ss_pred             c-cC-------------CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHH------HHHHHHHHHHHHHhhcCCCCce
Q 028725           94 F-DD-------------SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQR------ISAAIGVARGIQFLHTGIVPGV  153 (205)
Q Consensus        94 ~-~~-------------~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~------~~i~~~i~~~l~~lh~~~~~~i  153 (205)
                      . .+             ......++||||++ ++|.+++.... ..+.+..+      +.++.|++.||.|||+   .+|
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~-~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~---~~i  215 (371)
T 3q60_A          141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLD-FVYVFRGDEGILALHILTAQLIRLAANLQS---KGL  215 (371)
T ss_dssp             EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHH-HSCCCCHHHHHHHHHHHHHHHHHHHHHHHH---TTE
T ss_pred             ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhc-cccchhhhhhhhhHHHHHHHHHHHHHHHHH---CCC
Confidence            0 00             00145899999998 79999998542 13344444      6778999999999999   799


Q ss_pred             eecCCccccEEeCCCCceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          154 FSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       154 ~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +||||||+||+++.++.++|+|||+++.......  ...+|..|+|||..
T Consensus       216 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~--~~~~t~~y~aPE~~  263 (371)
T 3q60_A          216 VHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGP--ASSVPVTYAPREFL  263 (371)
T ss_dssp             EETTCSGGGEEECTTSCEEECCGGGEEETTCEEE--GGGSCGGGCCHHHH
T ss_pred             ccCcCCHHHEEECCCCCEEEEecceeeecCCCcc--CccCCcCCcChhhc
Confidence            9999999999999999999999999986654332  35677999999964

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.97  E-value=2.5e-30  Score=198.50  Aligned_cols=169  Identities=20%  Similarity=0.348  Sum_probs=132.5

Q ss_pred             hcCCCcceeeccCcceEEEEEEec--CCc--EEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK--NGT--FIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~--~~~--~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      .++|++.+.||+|+||.||+|.+.  ++.  .||+|+++...   ....+.+.+|+.+++.++||||+++++++..    
T Consensus        17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~----   92 (291)
T 1u46_A           17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT----   92 (291)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred             hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcc----
Confidence            478999999999999999999853  233  68999987542   3345678899999999999999999998764    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                          ...++++|++++++|.+++.... ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+|
T Consensus        93 ----~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nili~~~~~~kl~D  164 (291)
T 1u46_A           93 ----PPMKMVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGD  164 (291)
T ss_dssp             ----SSCEEEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECC
T ss_pred             ----CCceeeEecccCCCHHHHHHhcc-CCcCHHHHHHHHHHHHHHHHHHHh---CCcccCCCchheEEEcCCCCEEEcc
Confidence                23789999999999999987543 368899999999999999999999   7999999999999999999999999


Q ss_pred             CCchhhcccccc----cccccccccccCCCCC
Q 028725          176 YNLPLLAENAEK----VGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~~----~~~~~~~~~~~aPE~~  203 (205)
                      ||++........    .....++..|+|||..
T Consensus       165 fg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  196 (291)
T 1u46_A          165 FGLMRALPQNDDHYVMQEHRKVPFAWCAPESL  196 (291)
T ss_dssp             CTTCEECCC-CCEEEC-----CCGGGCCHHHH
T ss_pred             ccccccccccccchhhhccCCCCceeeCchhh
Confidence            999987654332    2234677889999963

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.97  E-value=6.7e-31  Score=204.23  Aligned_cols=177  Identities=20%  Similarity=0.372  Sum_probs=143.5

Q ss_pred             ccCHHHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCccccccccee
Q 028725           13 TFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCF   90 (205)
Q Consensus        13 ~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~   90 (205)
                      .....++....++|++.+.||+|+||.||+|....  .+++|+++...  ....+.+.+|+.+++.++||||+++++.+.
T Consensus        22 ~~~~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~   99 (319)
T 2y4i_B           22 SIFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACM   99 (319)
T ss_dssp             CCCGGGSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEE
T ss_pred             ccccccccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEe
Confidence            34456666677899999999999999999999753  48999986543  334456778999999999999999999887


Q ss_pred             eecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc
Q 028725           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  170 (205)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~  170 (205)
                      +       ....++++|++++++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++ ++.
T Consensus       100 ~-------~~~~~iv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dlkp~NIl~~-~~~  167 (319)
T 2y4i_B          100 S-------PPHLAIITSLCKGRTLYSVVRDAK-IVLDVNKTRQIAQEIVKGMGYLHA---KGILHKDLKSKNVFYD-NGK  167 (319)
T ss_dssp             C-------SSCEEEECBCCCSEEHHHHTTSSC-CCCCSHHHHHHHHHHHHHHHHHHH---TTCCCCCCCSTTEEEC---C
T ss_pred             c-------CCceEEEeecccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHh---CCccccCCChhhEEEe-CCC
Confidence            6       567999999999999999997643 468889999999999999999999   7999999999999998 679


Q ss_pred             eeEcCCCchhhcccc------cccccccccccccCCCCC
Q 028725          171 AKISSYNLPLLAENA------EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       171 ~~l~Dfg~a~~~~~~------~~~~~~~~~~~~~aPE~~  203 (205)
                      ++|+|||++......      .......++..|+|||..
T Consensus       168 ~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~  206 (319)
T 2y4i_B          168 VVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEII  206 (319)
T ss_dssp             CEECCCSCCC----------CCSCBCCSGGGGTSCHHHH
T ss_pred             EEEeecCCccccccccccccccccccCCCcccccChHHh
Confidence            999999998654321      222334689999999964

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.97  E-value=6.9e-30  Score=199.69  Aligned_cols=167  Identities=17%  Similarity=0.257  Sum_probs=140.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-c-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCc------ccccccceeeecc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-K-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH------LVSALGHCFECYF   94 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~   94 (205)
                      .++|++.+.||+|+||.||+|.. . +++.||+|+++.. ....+.+.+|+.+++.++|++      ++++.+.+..   
T Consensus        13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~---   88 (339)
T 1z57_A           13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEH---   88 (339)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEE---
T ss_pred             cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeeccccc---
Confidence            46899999999999999999986 3 5889999999643 234566788999998887654      8888887765   


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC-------
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-------  167 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~-------  167 (205)
                          ....++|||++ +++|.+++.......+++..++.++.|++.||.|||+   .+++||||||+||+++.       
T Consensus        89 ----~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~  160 (339)
T 1z57_A           89 ----HGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHS---NKLTHTDLKPENILFVQSDYTEAY  160 (339)
T ss_dssp             ----TTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESCCCEEEEE
T ss_pred             ----CCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHEEEecccccccc
Confidence                56899999999 7899999987654578899999999999999999999   79999999999999987       


Q ss_pred             ------------CCceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          168 ------------NLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       168 ------------~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                                  ++.++|+|||++......  .....+|..|+|||..
T Consensus       161 ~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~--~~~~~gt~~y~aPE~~  206 (339)
T 1z57_A          161 NPKIKRDERTLINPDIKVVDFGSATYDDEH--HSTLVSTRHYRAPEVI  206 (339)
T ss_dssp             C----CEEEEESCCCEEECCCSSCEETTSC--CCSSCSCGGGCCHHHH
T ss_pred             CCccccccccccCCCceEeeCcccccCccc--cccccCCccccChHHh
Confidence                        668999999999765543  3345899999999963

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.97  E-value=5.8e-31  Score=219.16  Aligned_cols=158  Identities=11%  Similarity=0.107  Sum_probs=121.8

Q ss_pred             eccCcceEEEEEE-ecCCcEEEEEEecccC----------CcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCCC
Q 028725           32 MGEGSKGQMYRGR-LKNGTFIAIRCLKMKK----------SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        32 lg~g~~g~V~~~~-~~~~~~vaiK~~~~~~----------~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .+.|+.|.+..++ .-.|..+++|++.+..          ....+.+.+|+++|+++ .|+||+++++++.+       .
T Consensus       242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed-------~  314 (569)
T 4azs_A          242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGEN-------A  314 (569)
T ss_dssp             -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEEC-------S
T ss_pred             cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEE-------C
Confidence            3445555444444 2347889999997542          12235688999999999 69999999998876       7


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ..+||||||++|++|.+.+....  +++..   .|+.||+.||.|+|+   .||+||||||+|||+++++.+||+|||+|
T Consensus       315 ~~~yLVMEyv~G~~L~d~i~~~~--~l~~~---~I~~QIl~AL~ylH~---~GIIHRDIKPeNILL~~dg~vKL~DFGlA  386 (569)
T 4azs_A          315 QSGWLVMEKLPGRLLSDMLAAGE--EIDRE---KILGSLLRSLAALEK---QGFWHDDVRPWNVMVDARQHARLIDFGSI  386 (569)
T ss_dssp             SEEEEEEECCCSEEHHHHHHTTC--CCCHH---HHHHHHHHHHHHHHH---TTCEESCCCGGGEEECTTSCEEECCCTTE
T ss_pred             CEEEEEEecCCCCcHHHHHHhCC--CCCHH---HHHHHHHHHHHHHHH---CCceeccCchHhEEECCCCCEEEeecccC
Confidence            78999999999999999998764  56654   478999999999999   79999999999999999999999999999


Q ss_pred             hhccccc-ccccccccccccCCCCCC
Q 028725          180 LLAENAE-KVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       180 ~~~~~~~-~~~~~~~~~~~~aPE~~~  204 (205)
                      +...... .....+||++|||||+..
T Consensus       387 r~~~~~~~~~~t~vGTp~YmAPE~l~  412 (569)
T 4azs_A          387 VTTPQDCSWPTNLVQSFFVFVNELFA  412 (569)
T ss_dssp             ESCC---CCSHHHHHHHHHHHHHHC-
T ss_pred             eeCCCCCccccCceechhhccHHHhC
Confidence            8765543 344568999999999753

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=202.18  Aligned_cols=170  Identities=18%  Similarity=0.248  Sum_probs=136.4

Q ss_pred             HHHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCC------cCHHHHHHHHHHHhcc----CCCcccccccc
Q 028725           20 EEATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS------HSTRNFMHHIELISKL----RHCHLVSALGH   88 (205)
Q Consensus        20 ~~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~------~~~~~~~~e~~~l~~l----~~~~i~~~~~~   88 (205)
                      ....++|++.+.||+|+||.||+|.. .+++.||+|++.....      .....+.+|+.++..+    +||||++++++
T Consensus        27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~  106 (312)
T 2iwi_A           27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDW  106 (312)
T ss_dssp             ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEE
T ss_pred             hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEE
Confidence            45567899999999999999999995 4688999999975532      1233455688888888    89999999998


Q ss_pred             eeeecccCCCCCeEEEEEee-cCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC-
Q 028725           89 CFECYFDDSSVSRIFLIFEY-VPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD-  166 (205)
Q Consensus        89 ~~~~~~~~~~~~~~~lv~e~-~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~-  166 (205)
                      +..       .+..++++|+ +.+++|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||+++ 
T Consensus       107 ~~~-------~~~~~~v~e~~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~  174 (312)
T 2iwi_A          107 FET-------QEGFMLVLERPLPAQDLFDYITEKG--PLGEGPSRCFFGQVVAAIQHCHS---RGVVHRDIKDENILIDL  174 (312)
T ss_dssp             C------------CEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHH---HTEECCCCSGGGEEEET
T ss_pred             Eec-------CCeEEEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChhhEEEeC
Confidence            865       5678899999 78899999998653  68999999999999999999999   7999999999999999 


Q ss_pred             CCCceeEcCCCchhhcccccccccccccccccCCCC
Q 028725          167 QNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       167 ~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      .++.++|+|||++....... .....++..|+|||.
T Consensus       175 ~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~y~aPE~  209 (312)
T 2iwi_A          175 RRGCAKLIDFGSGALLHDEP-YTDFDGTRVYSPPEW  209 (312)
T ss_dssp             TTTEEEECCCSSCEECCSSC-BCCCCSCTTTSCHHH
T ss_pred             CCCeEEEEEcchhhhcccCc-ccccCCcccccCcee
Confidence            88999999999998776533 344679999999995

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.97  E-value=2.4e-30  Score=201.64  Aligned_cols=172  Identities=17%  Similarity=0.222  Sum_probs=144.0

Q ss_pred             HHHHHhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCc------CHHHHHHHHHHHhccC--CCcccccccc
Q 028725           18 ELEEATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSH------STRNFMHHIELISKLR--HCHLVSALGH   88 (205)
Q Consensus        18 ~~~~~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~------~~~~~~~e~~~l~~l~--~~~i~~~~~~   88 (205)
                      +.....++|++.+.||+|+||.||+|.. .+++.||+|+++.....      ....+.+|+.+++.+.  |+||+++++.
T Consensus        37 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~  116 (320)
T 3a99_A           37 EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDW  116 (320)
T ss_dssp             ---CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEE
T ss_pred             ccCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEE
Confidence            4445567899999999999999999995 46889999999765322      2345667999999996  5999999998


Q ss_pred             eeeecccCCCCCeEEEEEeecCC-CcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC-
Q 028725           89 CFECYFDDSSVSRIFLIFEYVPN-GTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD-  166 (205)
Q Consensus        89 ~~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~-  166 (205)
                      +..       .+..++++|++.+ ++|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||+++ 
T Consensus       117 ~~~-------~~~~~lv~e~~~~~~~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~  184 (320)
T 3a99_A          117 FER-------PDSFVLILERPEPVQDLFDFITERG--ALQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDL  184 (320)
T ss_dssp             EEC-------SSEEEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEET
T ss_pred             Eec-------CCcEEEEEEcCCCCccHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHH---CCcEeCCCCHHHEEEeC
Confidence            876       5689999999976 89999987643  68899999999999999999999   7999999999999999 


Q ss_pred             CCCceeEcCCCchhhcccccccccccccccccCCCC
Q 028725          167 QNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       167 ~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      +++.++|+|||++....... .....+|..|+|||.
T Consensus       185 ~~~~~kL~Dfg~~~~~~~~~-~~~~~gt~~y~aPE~  219 (320)
T 3a99_A          185 NRGELKLIDFGSGALLKDTV-YTDFDGTRVYSPPEW  219 (320)
T ss_dssp             TTTEEEECCCTTCEECCSSC-BCCCCSCGGGSCHHH
T ss_pred             CCCCEEEeeCcccccccccc-ccCCCCCccCCChHH
Confidence            78999999999998776533 334579999999995

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.96  E-value=2.9e-30  Score=218.28  Aligned_cols=170  Identities=18%  Similarity=0.290  Sum_probs=139.6

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEecC----CcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLKN----GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~~----~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      ...++|++.+.||+|+||.||+|.+..    +..+|+|.++... ....+.+.+|+.+++.++||||+++++++.     
T Consensus       387 i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-----  461 (656)
T 2j0j_A          387 IQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-----  461 (656)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----
T ss_pred             cccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----
Confidence            345778999999999999999999642    4578999886543 233467889999999999999999999874     


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                         .+..++||||+++++|.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|
T Consensus       462 ---~~~~~lv~E~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDikp~NILl~~~~~vkL~D  534 (656)
T 2j0j_A          462 ---ENPVWIIMELCTLGELRSFLQVRK-FSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGD  534 (656)
T ss_dssp             ---SSSCEEEEECCTTCBHHHHHHHTT-TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECC
T ss_pred             ---cCceEEEEEcCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHh---CCccccccchHhEEEeCCCCEEEEe
Confidence               245899999999999999997543 468899999999999999999999   7999999999999999999999999


Q ss_pred             CCchhhcccccc--cccccccccccCCCC
Q 028725          176 YNLPLLAENAEK--VGHVTPYSGSINPTN  202 (205)
Q Consensus       176 fg~a~~~~~~~~--~~~~~~~~~~~aPE~  202 (205)
                      ||+++.......  .....++..|+|||.
T Consensus       535 FG~a~~~~~~~~~~~~~~~~t~~y~aPE~  563 (656)
T 2j0j_A          535 FGLSRYMEDSTYYKASKGKLPIKWMAPES  563 (656)
T ss_dssp             CCCCCSCCC----------CCGGGCCHHH
T ss_pred             cCCCeecCCCcceeccCCCCCcceeCHHH
Confidence            999987655432  223466789999995

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.96  E-value=6e-30  Score=201.82  Aligned_cols=169  Identities=14%  Similarity=0.231  Sum_probs=136.2

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|.+.+.||+|+||.||+|.. .+|+.||+|++.....  .....+.+|+.+++.++||||+++.+++...... ...
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~-~~~  101 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSL-RNF  101 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSG-GGC
T ss_pred             CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccc-ccc
Confidence            47899999999999999999995 4689999999975432  2346778999999999999999999987652110 001


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...+++||++. ++|.+++..    .+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||++
T Consensus       102 ~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~al~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~  173 (353)
T 3coi_A          102 YDFYLVMPFMQ-TDLQKIMGL----KFSEEKIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDFGLA  173 (353)
T ss_dssp             CCCEEEEECCS-EEGGGTTTS----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECTTCCEEECSTTCT
T ss_pred             eeEEEEecccc-CCHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEeECCCCcEEEeecccc
Confidence            24599999997 588887643    58899999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      ......  .....+|..|+|||.
T Consensus       174 ~~~~~~--~~~~~~t~~y~aPE~  194 (353)
T 3coi_A          174 RHADAE--MTGYVVTRWYRAPEV  194 (353)
T ss_dssp             TC----------CCSBCCSCHHH
T ss_pred             cCCCCC--ccccccCcCcCCHHH
Confidence            866543  234578999999995

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.96  E-value=2.9e-29  Score=196.79  Aligned_cols=171  Identities=17%  Similarity=0.201  Sum_probs=123.1

Q ss_pred             HhcCCCcce-eeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           22 ATNNFDTSA-FMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        22 ~~~~y~~~~-~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ..++|.+.+ .||+|+||.||+|... +++.||+|++...    .....+....++.+.||||+++++++....   ...
T Consensus        26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~---~~~   98 (336)
T 3fhr_A           26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS----PKARQEVDHHWQASGGPHIVCILDVYENMH---HGK   98 (336)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEE---TTE
T ss_pred             ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc----HHHHHHHHHHHHhcCCCChHHHHHHHhhcc---CCC
Confidence            367899865 6999999999999965 6899999999642    222223333456678999999999876421   223


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC---CCceeEcCC
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---NLVAKISSY  176 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~---~~~~~l~Df  176 (205)
                      ...++||||+++++|.+++.......+++..++.++.|++.||.|||+   .+++||||||+||+++.   ++.++|+||
T Consensus        99 ~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~---~~ivH~dlkp~NIll~~~~~~~~~kl~Df  175 (336)
T 3fhr_A           99 RCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHS---HNIAHRDVKPENLLYTSKEKDAVLKLTDF  175 (336)
T ss_dssp             EEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSTTCCEEECCC
T ss_pred             ceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEEecCCCceEEEecc
Confidence            458999999999999999987665679999999999999999999999   79999999999999986   455999999


Q ss_pred             CchhhcccccccccccccccccCCCCC
Q 028725          177 NLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |++...... ......+|..|+|||..
T Consensus       176 g~~~~~~~~-~~~~~~~t~~y~aPE~~  201 (336)
T 3fhr_A          176 GFAKETTQN-ALQTPCYTPYYVAPEVL  201 (336)
T ss_dssp             TTCEEC---------------------
T ss_pred             ccceecccc-ccccCCCCcCccChhhh
Confidence            999866543 23345889999999975

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.96  E-value=7.8e-30  Score=198.04  Aligned_cols=174  Identities=15%  Similarity=0.281  Sum_probs=126.9

Q ss_pred             HHHHHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCc--CHHHHHHHHHHHhccCCCcccccccceeeecc
Q 028725           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH--STRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (205)
Q Consensus        18 ~~~~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   94 (205)
                      .+....++|++.+.||+|+||.||+|... +++.||+|++......  ....+.++..+++.++||||+++++++..   
T Consensus        19 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~---   95 (318)
T 2dyl_A           19 RYQAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFIT---   95 (318)
T ss_dssp             EEECCGGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC---
T ss_pred             hhhhhhccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEec---
Confidence            33445688999999999999999999964 6899999999755322  12334445567888899999999998876   


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-ceeecCCccccEEeCCCCceeE
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP-GVFSNNLKITDILLDQNLVAKI  173 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~-~i~h~dlkp~nilv~~~~~~~l  173 (205)
                          ....+++||++ ++.+..+..... ..+++..++.++.|++.||.|||+   . +++|+||||+||+++.++.++|
T Consensus        96 ----~~~~~lv~e~~-~~~~~~l~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~~i~H~dlkp~Nil~~~~~~~kl  166 (318)
T 2dyl_A           96 ----NTDVFIAMELM-GTCAEKLKKRMQ-GPIPERILGKMTVAIVKALYYLKE---KHGVIHRDVKPSNILLDERGQIKL  166 (318)
T ss_dssp             ----SSEEEEEECCC-SEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCGGGEEECTTSCEEE
T ss_pred             ----CCcEEEEEecc-CCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHh---hCCEEeCCCCHHHEEECCCCCEEE
Confidence                56899999999 556666554322 468999999999999999999998   5 9999999999999999999999


Q ss_pred             cCCCchhhcccccccccccccccccCCCCC
Q 028725          174 SSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       174 ~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +|||++.............++..|+|||..
T Consensus       167 ~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~  196 (318)
T 2dyl_A          167 CDFGISGRLVDDKAKDRSAGCAAYMAPERI  196 (318)
T ss_dssp             CCCTTC--------------CCTTCCHHHH
T ss_pred             EECCCchhccCCccccccCCCccccChhhc
Confidence            999999877665555556899999999974

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.96  E-value=3.4e-29  Score=204.82  Aligned_cols=167  Identities=14%  Similarity=0.205  Sum_probs=137.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccc-cceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSAL-GHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~-~~~~~~~~~~~~~~  100 (205)
                      .++|++.+.||+|+||.||+|.. .+++.||+|++.....  ...+.+|+.+++.++|++.+..+ .++..       ..
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~-------~~   76 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVE-------GD   76 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEE-------TT
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEee-------CC
Confidence            57899999999999999999995 5689999998865432  33477899999999875555443 33333       56


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEe---CCCCceeEcCCC
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL---DQNLVAKISSYN  177 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv---~~~~~~~l~Dfg  177 (205)
                      ..+++||++ +++|.+++.... ..+++..++.++.|++.||.|||+   .+|+||||||+||+|   +.++.++|+|||
T Consensus        77 ~~~lvme~~-g~sL~~ll~~~~-~~l~~~~~~~i~~qi~~aL~yLH~---~gIvHrDIKP~NILl~~~~~~~~vkL~DFG  151 (483)
T 3sv0_A           77 YNVLVMDLL-GPSLEDLFNFCS-RKLSLKTVLMLADQMINRVEFVHS---KSFLHRDIKPDNFLMGLGRRANQVYIIDFG  151 (483)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECCGGGTTCEEECCCT
T ss_pred             EEEEEEECC-CCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccCcceEEEecCCCCCeEEEEeCC
Confidence            789999999 889999997433 368999999999999999999999   799999999999999   588999999999


Q ss_pred             chhhcccccc--------cccccccccccCCCCC
Q 028725          178 LPLLAENAEK--------VGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~--------~~~~~~~~~~~aPE~~  203 (205)
                      +++.......        .....||..|+|||..
T Consensus       152 la~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~  185 (483)
T 3sv0_A          152 LAKKYRDTSTHQHIPYRENKNLTGTARYASVNTH  185 (483)
T ss_dssp             TCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHH
T ss_pred             cceeccCCccccccccccccccCCCccccCHHHh
Confidence            9987665432        1246899999999964

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.96  E-value=3.1e-29  Score=199.79  Aligned_cols=171  Identities=17%  Similarity=0.231  Sum_probs=139.0

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccC-CC-----cccccccceeeec
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HC-----HLVSALGHCFECY   93 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-~~-----~i~~~~~~~~~~~   93 (205)
                      ...++|++.+.||+|+||.||+|... +++.||+|+++.. ......+..|+.++..+. |+     +++++.+.+..  
T Consensus        51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~--  127 (382)
T 2vx3_A           51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMF--  127 (382)
T ss_dssp             EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEE--
T ss_pred             EeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeecc--
Confidence            34578999999999999999999954 6889999999743 233456677888888775 55     37777777765  


Q ss_pred             ccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC--CCCce
Q 028725           94 FDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD--QNLVA  171 (205)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~--~~~~~  171 (205)
                           ....++|||++.+ +|.+++.......+++..+..++.|++.||.|||.+ ..+|+||||||+||+++  .++.+
T Consensus       128 -----~~~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~  200 (382)
T 2vx3_A          128 -----RNHLCLVFEMLSY-NLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAI  200 (382)
T ss_dssp             -----TTEEEEEEECCCC-BHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCE
T ss_pred             -----CCceEEEEecCCC-CHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcE
Confidence                 5689999999965 999999866545689999999999999999999941 16999999999999995  46789


Q ss_pred             eEcCCCchhhcccccccccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +|+|||+++.....  .....+|..|+|||..
T Consensus       201 kL~DFG~a~~~~~~--~~~~~~t~~y~aPE~~  230 (382)
T 2vx3_A          201 KIVDFGSSCQLGQR--IYQYIQSRFYRSPEVL  230 (382)
T ss_dssp             EECCCTTCEETTCC--CCSSCSCGGGCCHHHH
T ss_pred             EEEeccCceecccc--cccccCCccccChHHH
Confidence            99999999876542  3346899999999964

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.96  E-value=1.7e-29  Score=200.20  Aligned_cols=171  Identities=13%  Similarity=0.210  Sum_probs=141.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccC-----------CCccccccccee
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-----------HCHLVSALGHCF   90 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-----------~~~i~~~~~~~~   90 (205)
                      .++|++.+.||+|+||.||+|.. .+++.||+|++... ......+.+|+.+++.+.           ||||+++++.+.
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~   96 (373)
T 1q8y_A           18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN   96 (373)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred             CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence            47899999999999999999995 56899999999643 233456778898888876           789999999886


Q ss_pred             eecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-ceeecCCccccEEeC---
Q 028725           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP-GVFSNNLKITDILLD---  166 (205)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~-~i~h~dlkp~nilv~---  166 (205)
                      ...   ......++++|++ +++|.+++.......+++..+..++.|++.||.|||+   . +++||||||+||+++   
T Consensus        97 ~~~---~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~---~~~ivH~Dikp~NIll~~~~  169 (373)
T 1q8y_A           97 HKG---PNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHR---RCGIIHTDIKPENVLMEIVD  169 (373)
T ss_dssp             EEE---TTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH---TTCEECSCCSGGGEEEEEEE
T ss_pred             ccC---CCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHh---cCCEEecCCChHHeEEeccC
Confidence            522   1234789999999 8899999986554568999999999999999999999   7 999999999999994   


Q ss_pred             ---CCCceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          167 ---QNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       167 ---~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                         ..+.++|+|||++......  .....+|..|+|||..
T Consensus       170 ~~~~~~~~kl~Dfg~a~~~~~~--~~~~~~t~~y~aPE~~  207 (373)
T 1q8y_A          170 SPENLIQIKIADLGNACWYDEH--YTNSIQTREYRSPEVL  207 (373)
T ss_dssp             TTTTEEEEEECCCTTCEETTBC--CCSCCSCGGGCCHHHH
T ss_pred             CCcCcceEEEcccccccccCCC--CCCCCCCccccCcHHH
Confidence               4458999999999876543  2335899999999963

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.96  E-value=5.3e-30  Score=215.09  Aligned_cols=179  Identities=17%  Similarity=0.212  Sum_probs=145.9

Q ss_pred             HhcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc-CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ..++|++.+.||+|+||.||+|.. .+|+.||+|++... .......+.+|+.+++.++||||+++.+++..... ....
T Consensus        12 ~~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~-~~~~   90 (676)
T 3qa8_A           12 TCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQK-LAPN   90 (676)
T ss_dssp             -----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCC-CCTT
T ss_pred             CCCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeeccccc-ccCC
Confidence            348899999999999999999995 46899999998754 23345678899999999999999999887643111 1224


Q ss_pred             CeEEEEEeecCCCcHHHhhccCC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCc---eeEcC
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHA-WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV---AKISS  175 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~---~~l~D  175 (205)
                      ...++||||+++++|.+++.... ...+++..++.++.|++.||.|||+   .+++||||||+||+++.++.   ++|+|
T Consensus        91 ~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs---~gIVHrDLKP~NILl~~~g~~~~vKL~D  167 (676)
T 3qa8_A           91 DLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHE---NRIIHRDLKPENIVLQPGPQRLIHKIID  167 (676)
T ss_dssp             SSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHH---TTBCCCCCCSTTEEEECCSSSCEEEECS
T ss_pred             CeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHeEeecCCCceeEEEcc
Confidence            56799999999999999998543 2358888999999999999999999   79999999999999996654   89999


Q ss_pred             CCchhhcccccccccccccccccCCCCCC
Q 028725          176 YNLPLLAENAEKVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       176 fg~a~~~~~~~~~~~~~~~~~~~aPE~~~  204 (205)
                      ||++.............+|..|+|||...
T Consensus       168 FG~a~~~~~~~~~~~~~gt~~Y~APE~l~  196 (676)
T 3qa8_A          168 LGYAKELDQGELCTEFVGTLQYLAPELLE  196 (676)
T ss_dssp             CCCCCBTTSCCCCCCCCSCCTTCSSCSSC
T ss_pred             cccccccccccccccccCCcccCChHHhc
Confidence            99998887766666678999999999753

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.96  E-value=5.7e-30  Score=207.09  Aligned_cols=166  Identities=16%  Similarity=0.212  Sum_probs=130.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ..+|+..+.||+|+||+|+.....+++.||+|++....   ...+.+|+.+++.+ +||||+++++.+.+       ...
T Consensus        23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~---~~~~~~E~~~l~~l~~HpnIv~l~~~~~~-------~~~   92 (432)
T 3p23_A           23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPEC---FSFADREVQLLRESDEHPNVIRYFCTEKD-------RQF   92 (432)
T ss_dssp             TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTT---EEECHHHHHHHHHSCCCTTBCCEEEEEEE-------TTE
T ss_pred             cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHH---HHHHHHHHHHHHhccCCCCcCeEEEEEec-------CCE
Confidence            35699999999999999765555679999999996432   23356799999998 79999999988766       668


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC---C--CceeEcCC
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---N--LVAKISSY  176 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~---~--~~~~l~Df  176 (205)
                      .+++||++. ++|.+++.... ....+...+.++.|++.||.|||+   .+|+||||||+||+++.   +  ..++|+||
T Consensus        93 ~~lv~E~~~-g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NIll~~~~~~~~~~~kL~DF  167 (432)
T 3p23_A           93 QYIAIELCA-ATLQEYVEQKD-FAHLGLEPITLLQQTTSGLAHLHS---LNIVHRDLKPHNILISMPNAHGKIKAMISDF  167 (432)
T ss_dssp             EEEEEECCS-EEHHHHHHSSS-CCCCSSCHHHHHHHHHHHHHHHHH---TTCCCCCCSTTSEEECCCBTTTBCCEEECCT
T ss_pred             EEEEEECCC-CCHHHHHHhcC-CCccchhHHHHHHHHHHHHHHHHH---CcCEeCCCCHHHEEEecCCCCCceeEEEecc
Confidence            899999996 59999997654 234444567899999999999999   79999999999999953   2  35789999


Q ss_pred             Cchhhccccc----ccccccccccccCCCCC
Q 028725          177 NLPLLAENAE----KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~----~~~~~~~~~~~~aPE~~  203 (205)
                      |+++......    ......||.+|+|||..
T Consensus       168 G~a~~~~~~~~~~~~~~~~~gt~~y~APE~l  198 (432)
T 3p23_A          168 GLCKKLAVGRHSFSRRSGVPGTEGWIAPEML  198 (432)
T ss_dssp             TEEECC------------CCSCTTSCCGGGT
T ss_pred             cceeeccCCCcceeeccccCCCcCccChhhh
Confidence            9998766442    23345799999999975

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.96  E-value=8.2e-30  Score=206.36  Aligned_cols=175  Identities=17%  Similarity=0.225  Sum_probs=129.3

Q ss_pred             CHHHHHHHhcC-CCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhcc-CCCcccccccceeee
Q 028725           15 SLEELEEATNN-FDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFEC   92 (205)
Q Consensus        15 ~~~~~~~~~~~-y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~   92 (205)
                      ++.++....++ |...+.||+|+||+||.+...+|+.||+|++...   ..+.+.+|+.+++.+ +||||+++++.+.+ 
T Consensus         5 ~~p~~~~~l~~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~-   80 (434)
T 2rio_A            5 NIPNFEQSLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETT-   80 (434)
T ss_dssp             ---CCSCSCSSCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEEC-
T ss_pred             cccchhhhhhheeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEec-
Confidence            34444444444 4567889999999998776667999999998643   345677899999876 89999999888765 


Q ss_pred             cccCCCCCeEEEEEeecCCCcHHHhhccCCCCC-----CCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC
Q 028725           93 YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQS-----LTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ  167 (205)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~-----~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~  167 (205)
                            ....+++||++. ++|.+++.......     .++..++.++.|++.||.|||+   .+|+||||||+||+++.
T Consensus        81 ------~~~~~lv~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~  150 (434)
T 2rio_A           81 ------DRFLYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHS---LKIIHRDLKPQNILVST  150 (434)
T ss_dssp             ------SSEEEEEECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEEC
T ss_pred             ------CCeEEEEEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEec
Confidence                  678999999995 59999998653211     1223456799999999999999   79999999999999975


Q ss_pred             C-------------CceeEcCCCchhhcccccc-----cccccccccccCCCCC
Q 028725          168 N-------------LVAKISSYNLPLLAENAEK-----VGHVTPYSGSINPTNS  203 (205)
Q Consensus       168 ~-------------~~~~l~Dfg~a~~~~~~~~-----~~~~~~~~~~~aPE~~  203 (205)
                      +             +.++|+|||+++.......     .....||.+|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  204 (434)
T 2rio_A          151 SSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELL  204 (434)
T ss_dssp             CHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHH
T ss_pred             CcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHh
Confidence            4             4899999999987665432     2235899999999954

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.96  E-value=4.7e-29  Score=196.23  Aligned_cols=167  Identities=13%  Similarity=0.216  Sum_probs=136.9

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CC-cEEEEEEecccCCcCHHHHHHHHHHHhccCCCc------ccccccceeeecc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NG-TFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH------LVSALGHCFECYF   94 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~-~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~   94 (205)
                      .++|++.+.||+|+||.||+|... ++ ..||+|+++.. ......+.+|+.+++.++|++      ++.+.+.+..   
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~---   93 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNF---   93 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEE---
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeee---
Confidence            578999999999999999999964 44 68999999643 234566778999999987765      6677666654   


Q ss_pred             cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEe---------
Q 028725           95 DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL---------  165 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv---------  165 (205)
                          ....+++||++ ++++.+.+.......+++..++.++.|++.||.|||+   .+|+||||||+||++         
T Consensus        94 ----~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~  165 (355)
T 2eu9_A           94 ----HGHMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHE---NQLTHTDLKPENILFVNSEFETLY  165 (355)
T ss_dssp             ----TTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEESCCCEEEEE
T ss_pred             ----CCeEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEecccccccc
Confidence                56899999999 5577777765544578999999999999999999999   799999999999999         


Q ss_pred             ----------CCCCceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          166 ----------DQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       166 ----------~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                                +.++.++|+|||+++.....  .....+|..|+|||..
T Consensus       166 ~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~--~~~~~gt~~y~aPE~~  211 (355)
T 2eu9_A          166 NEHKSCEEKSVKNTSIRVADFGSATFDHEH--HTTIVATRHYRPPEVI  211 (355)
T ss_dssp             CCC-CCCEEEESCCCEEECCCTTCEETTSC--CCSSCSCGGGCCHHHH
T ss_pred             cccccccccccCCCcEEEeecCcccccccc--ccCCcCCCcccCCeee
Confidence                      56789999999999765443  3345899999999964

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.95  E-value=1.3e-27  Score=183.56  Aligned_cols=144  Identities=10%  Similarity=0.056  Sum_probs=125.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcC---HHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHS---TRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~---~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .++|++.+.||+|+||.||+|... +++.||+|++.......   ...+.+|+..+..++||||+++++++..       
T Consensus        30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~-------  102 (286)
T 3uqc_A           30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHT-------  102 (286)
T ss_dssp             TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-------
T ss_pred             cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEE-------
Confidence            367999999999999999999964 58999999997654322   3678899999999999999999998876       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      .+..++||||+++++|.+++...    ........++.|++.||.|||+   .+|+||||||+||+++.++.++|++++.
T Consensus       103 ~~~~~lv~e~~~g~~L~~~l~~~----~~~~~~~~i~~ql~~aL~~lH~---~givH~Dikp~NIll~~~g~~kl~~~~~  175 (286)
T 3uqc_A          103 RAGGLVVAEWIRGGSLQEVADTS----PSPVGAIRAMQSLAAAADAAHR---AGVALSIDHPSRVRVSIDGDVVLAYPAT  175 (286)
T ss_dssp             TTEEEEEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEEETTSCEEECSCCC
T ss_pred             CCcEEEEEEecCCCCHHHHHhcC----CChHHHHHHHHHHHHHHHHHHH---CCCccCCCCcccEEEcCCCCEEEEeccc
Confidence            56899999999999999998542    3445678899999999999999   7999999999999999999999998876


Q ss_pred             hh
Q 028725          179 PL  180 (205)
Q Consensus       179 a~  180 (205)
                      ..
T Consensus       176 ~~  177 (286)
T 3uqc_A          176 MP  177 (286)
T ss_dssp             CT
T ss_pred             cC
Confidence            53

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.95  E-value=2.5e-28  Score=202.31  Aligned_cols=154  Identities=12%  Similarity=0.138  Sum_probs=118.6

Q ss_pred             CcceeeccCcceEEEEEEecCCcEEEEEEecccCCc--------CHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           27 DTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH--------STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        27 ~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~--------~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ...+.||+|+||.||+|.. .+..+++|........        ..+.+.+|+.++++++||||+++...+..       
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~-------  410 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVD-------  410 (540)
T ss_dssp             ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEE-------
T ss_pred             CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEe-------
Confidence            4567899999999999965 4778888886543211        12347899999999999999966555543       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....++||||+++++|.+++..          ...++.|++.+|.|||+   .+|+||||||+||++++  .++|+|||+
T Consensus       411 ~~~~~lVmE~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH~---~gIiHrDiKp~NILl~~--~~kL~DFGl  475 (540)
T 3en9_A          411 LDNKRIMMSYINGKLAKDVIED----------NLDIAYKIGEIVGKLHK---NDVIHNDLTTSNFIFDK--DLYIIDFGL  475 (540)
T ss_dssp             TTTTEEEEECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHHH---TTEECTTCCTTSEEESS--SEEECCCTT
T ss_pred             CCccEEEEECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHHH---CcCccCCCCHHHEEECC--eEEEEECcc
Confidence            3456999999999999999875          45799999999999999   79999999999999999  999999999


Q ss_pred             hhhccccccc--------ccccccccccCCCCC
Q 028725          179 PLLAENAEKV--------GHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~--------~~~~~~~~~~aPE~~  203 (205)
                      ++........        ....||+.|||||..
T Consensus       476 a~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~  508 (540)
T 3en9_A          476 GKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIW  508 (540)
T ss_dssp             CEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             CEECCCccccccchhhhhhhhcCCCCcCCHHHH
Confidence            9887764321        346899999999964

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.95  E-value=4.4e-27  Score=181.47  Aligned_cols=152  Identities=16%  Similarity=0.274  Sum_probs=128.4

Q ss_pred             HhcCCCcc-eeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHH-hccCCCcccccccceeeecccCCC
Q 028725           22 ATNNFDTS-AFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELI-SKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        22 ~~~~y~~~-~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ..++|.+. +.||+|+||.||+|.. .+++.||+|+++.     ...+.+|+.++ +..+||||+++++++....   ..
T Consensus        15 ~~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~---~~   86 (299)
T 3m2w_A           15 IIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLY---AG   86 (299)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEE---TT
T ss_pred             cccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhhc---CC
Confidence            35778877 7899999999999995 4689999999963     34566788877 5568999999999875421   22


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC---CCceeEcC
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---NLVAKISS  175 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~---~~~~~l~D  175 (205)
                      ....++||||+++++|.+++.......+++..++.++.|++.||.|||+   .+++||||||+||+++.   ++.++|+|
T Consensus        87 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~~~kl~D  163 (299)
T 3m2w_A           87 RKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTD  163 (299)
T ss_dssp             EEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSTTCCEEECC
T ss_pred             CceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEecCCCCCcEEEec
Confidence            4578999999999999999987655579999999999999999999999   79999999999999997   78999999


Q ss_pred             CCchhhccc
Q 028725          176 YNLPLLAEN  184 (205)
Q Consensus       176 fg~a~~~~~  184 (205)
                      ||++.....
T Consensus       164 fg~a~~~~~  172 (299)
T 3m2w_A          164 FGFAKETTG  172 (299)
T ss_dssp             CTTCEECTT
T ss_pred             ccccccccc
Confidence            999965543

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.95  E-value=1.3e-27  Score=192.41  Aligned_cols=174  Identities=16%  Similarity=0.204  Sum_probs=127.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC---CcCHHHHHHHHHHHhccCC-Ccccccccc---------
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRH-CHLVSALGH---------   88 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~-~~i~~~~~~---------   88 (205)
                      ..+|...+.||+|+||.||+|.+ .+|+.||+|++....   ....+.+.+|+.+++.+.| .+.......         
T Consensus        77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~  156 (413)
T 3dzo_A           77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  156 (413)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred             ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence            34578889999999999999994 569999999997442   2346778899999999876 322111111         


Q ss_pred             eeee--------ccc--CCCCCeEEEEEeecCCCcHHHhhc-----cCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCce
Q 028725           89 CFEC--------YFD--DSSVSRIFLIFEYVPNGTLRSWIS-----GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGV  153 (205)
Q Consensus        89 ~~~~--------~~~--~~~~~~~~lv~e~~~~~~L~~~~~-----~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i  153 (205)
                      +...        ...  .......+++|+.. +++|.+++.     ......+++..++.++.|++.||.|||+   .+|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~i  232 (413)
T 3dzo_A          157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH---YGL  232 (413)
T ss_dssp             EECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH---TTE
T ss_pred             cccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHh---CCc
Confidence            0000        000  00022356677765 679999985     2222457888899999999999999999   799


Q ss_pred             eecCCccccEEeCCCCceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          154 FSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       154 ~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +||||||+||+++.++.+||+|||+++.....  .....| ..|+|||..
T Consensus       233 iHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~--~~~~~g-~~y~aPE~~  279 (413)
T 3dzo_A          233 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS--AVSPIG-RGFAPPETT  279 (413)
T ss_dssp             ECSCCCGGGEEECTTCCEEECCGGGCEETTEE--ECCCCC-TTTCCHHHH
T ss_pred             ccCCcccceEEEecCCeEEEEeccceeecCCc--cccCCC-CceeCchhh
Confidence            99999999999999999999999998766544  344577 999999964

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.94  E-value=4.1e-27  Score=180.36  Aligned_cols=144  Identities=11%  Similarity=0.106  Sum_probs=113.5

Q ss_pred             HHHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCc------------------CHHHHHHHHHHHhcc
Q 028725           16 LEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH------------------STRNFMHHIELISKL   77 (205)
Q Consensus        16 ~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~------------------~~~~~~~e~~~l~~l   77 (205)
                      +..+......|.+++.||+|+||.||+|...+|+.||+|+++.....                  ....+.+|+.+++.+
T Consensus        82 l~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l  161 (282)
T 1zar_A           82 LHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL  161 (282)
T ss_dssp             HHHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhc
Confidence            33444455667788999999999999999977999999999643211                  234578999999999


Q ss_pred             CCCcccccccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecC
Q 028725           78 RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNN  157 (205)
Q Consensus        78 ~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~d  157 (205)
                      +  | +++.+.+.        .+..++||||+++++|.+ +...        ....++.|++.||.|||+   .+++|||
T Consensus       162 ~--~-~~v~~~~~--------~~~~~lvmE~~~g~~L~~-l~~~--------~~~~i~~qi~~~l~~lH~---~giiHrD  218 (282)
T 1zar_A          162 Q--G-LAVPKVYA--------WEGNAVLMELIDAKELYR-VRVE--------NPDEVLDMILEEVAKFYH---RGIVHGD  218 (282)
T ss_dssp             T--T-SSSCCEEE--------EETTEEEEECCCCEEGGG-CCCS--------CHHHHHHHHHHHHHHHHH---TTEECSC
T ss_pred             c--C-CCcCeEEe--------ccceEEEEEecCCCcHHH-cchh--------hHHHHHHHHHHHHHHHHH---CCCEeCC
Confidence            8  4 56655432        234699999999999998 4321        134699999999999999   7999999


Q ss_pred             CccccEEeCCCCceeEcCCCchhhcc
Q 028725          158 LKITDILLDQNLVAKISSYNLPLLAE  183 (205)
Q Consensus       158 lkp~nilv~~~~~~~l~Dfg~a~~~~  183 (205)
                      |||+||+++ ++.++|+|||+|+...
T Consensus       219 lkp~NILl~-~~~vkl~DFG~a~~~~  243 (282)
T 1zar_A          219 LSQYNVLVS-EEGIWIIDFPQSVEVG  243 (282)
T ss_dssp             CSTTSEEEE-TTEEEECCCTTCEETT
T ss_pred             CCHHHEEEE-CCcEEEEECCCCeECC
Confidence            999999999 9999999999997443

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.90  E-value=2.2e-23  Score=157.68  Aligned_cols=141  Identities=9%  Similarity=0.086  Sum_probs=106.6

Q ss_pred             CCCcceeeccCcceEEEEEEe-cCCcE--EEEEEecccCCcC------------------------HHHHHHHHHHHhcc
Q 028725           25 NFDTSAFMGEGSKGQMYRGRL-KNGTF--IAIRCLKMKKSHS------------------------TRNFMHHIELISKL   77 (205)
Q Consensus        25 ~y~~~~~lg~g~~g~V~~~~~-~~~~~--vaiK~~~~~~~~~------------------------~~~~~~e~~~l~~l   77 (205)
                      -|++.+.||+|+||.||+|.. .+|+.  ||+|+++......                        ...+.+|+..+..+
T Consensus        48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l  127 (258)
T 1zth_A           48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA  127 (258)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred             chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence            367889999999999999997 67988  9999975432111                        12577899999999


Q ss_pred             CCCcccccccceeeecccCCCCCeEEEEEeecCC-C----cHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhh-cCCCC
Q 028725           78 RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPN-G----TLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH-TGIVP  151 (205)
Q Consensus        78 ~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~----~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh-~~~~~  151 (205)
                      .|+++.-......         ...++||||+.+ |    +|.+....     .++.....++.|++.+|.||| +   .
T Consensus       128 ~~~~i~~p~~~~~---------~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~l~~lH~~---~  190 (258)
T 1zth_A          128 KEAGVSVPQPYTY---------MKNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVENVKRLYQE---A  190 (258)
T ss_dssp             HHTTCCCCCEEEE---------ETTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHHHHHHHHT---S
T ss_pred             HhCCCCCCeEEEc---------CCCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHHHHHHHHH---C
Confidence            8887532211111         245899999942 3    67765432     223456789999999999999 8   7


Q ss_pred             ceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       152 ~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      +++||||||+||++++  .++|+|||+|.....
T Consensus       191 givHrDlkp~NILl~~--~~~liDFG~a~~~~~  221 (258)
T 1zth_A          191 ELVHADLSEYNIMYID--KVYFIDMGQAVTLRH  221 (258)
T ss_dssp             CEECSSCSTTSEEESS--SEEECCCTTCEETTS
T ss_pred             CEEeCCCCHHHEEEcC--cEEEEECcccccCCC
Confidence            9999999999999998  999999999976554

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.83  E-value=1.4e-20  Score=148.67  Aligned_cols=151  Identities=13%  Similarity=0.124  Sum_probs=100.1

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCC--------------cCHHHHHHHHHHHhccCCCcccccc
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS--------------HSTRNFMHHIELISKLRHCHLVSAL   86 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~--------------~~~~~~~~e~~~l~~l~~~~i~~~~   86 (205)
                      ....-|++++.||+|++|.||+|...+|+.||+|+++....              .....+..+.+++....|+|+.++.
T Consensus        92 ~rg~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~  171 (397)
T 4gyi_A           92 ARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALY  171 (397)
T ss_dssp             HTTSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence            33334999999999999999999988899999999854311              1111222333333333344444443


Q ss_pred             cceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC
Q 028725           87 GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD  166 (205)
Q Consensus        87 ~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~  166 (205)
                      ........+.. ....++||||++|++|.++....        ....++.|++.+|.+||+   .|++||||||.|||++
T Consensus       172 ~~gv~vp~p~~-~~~~~LVME~i~G~~L~~l~~~~--------~~~~l~~qll~~l~~lH~---~gIVHrDLKp~NILl~  239 (397)
T 4gyi_A          172 EEGFPVPEPIA-QSRHTIVMSLVDALPMRQVSSVP--------DPASLYADLIALILRLAK---HGLIHGDFNEFNILIR  239 (397)
T ss_dssp             HTTCSCCCEEE-EETTEEEEECCSCEEGGGCCCCS--------CHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEE
T ss_pred             hcCCCCCeeee-ccCceEEEEecCCccHhhhcccH--------HHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHEEEe
Confidence            22111000000 11236999999998887654321        124577899999999999   7999999999999998


Q ss_pred             CCC----------ceeEcCCCchhhcc
Q 028725          167 QNL----------VAKISSYNLPLLAE  183 (205)
Q Consensus       167 ~~~----------~~~l~Dfg~a~~~~  183 (205)
                      +++          .+.|+||+-+....
T Consensus       240 ~dgd~~d~~~~~~~~~iID~~Q~V~~~  266 (397)
T 4gyi_A          240 EEKDAEDPSSITLTPIIIXFPQMVSMD  266 (397)
T ss_dssp             EEECSSCTTSEEEEEEECCCTTCEETT
T ss_pred             CCCCcccccccccceEEEEeCCcccCC
Confidence            776          48999999764433

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.54  E-value=9.5e-14  Score=104.73  Aligned_cols=150  Identities=9%  Similarity=-0.010  Sum_probs=111.8

Q ss_pred             HHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccC-CCcccccccceeeecccCC
Q 028725           19 LEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        19 ~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~~   97 (205)
                      +......|.+...++.|+.+.||++... +..+++|+...........+.+|..+++.+. +..++++++.+..      
T Consensus         9 l~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~------   81 (263)
T 3tm0_A            9 LKKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERH------   81 (263)
T ss_dssp             HHHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEE------
T ss_pred             HHHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEec------
Confidence            3455678988898999999999999754 6889999986532233456888999998885 5666777776654      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcC-----------------------------
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTG-----------------------------  148 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~-----------------------------  148 (205)
                       .+..|++||+++|.++.+.+...       .....++.+++.++..||+-                             
T Consensus        82 -~~~~~lv~e~i~G~~l~~~~~~~-------~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (263)
T 3tm0_A           82 -DGWSNLLMSEADGVLCSEEYEDE-------QSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADV  153 (263)
T ss_dssp             -TTEEEEEEECCSSEEHHHHCCTT-------TCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCC
T ss_pred             -CCceEEEEEecCCeehhhccCCc-------ccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccc
Confidence             56789999999999998764211       11235778888888888871                             


Q ss_pred             ---------------------------CCCceeecCCccccEEeCCCCceeEcCCCchhhcc
Q 028725          149 ---------------------------IVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  183 (205)
Q Consensus       149 ---------------------------~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~  183 (205)
                                                 ....++|+|++|.||++++...+.|+||+.+....
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~gd  215 (263)
T 3tm0_A          154 DCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRAD  215 (263)
T ss_dssp             SGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEEEE
T ss_pred             ccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcccCC
Confidence                                       01348999999999999876666799999885443

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.45  E-value=5.5e-13  Score=100.12  Aligned_cols=142  Identities=15%  Similarity=0.085  Sum_probs=97.7

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcc--cccccceeeecccCCCC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL--VSALGHCFECYFDDSSV   99 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i--~~~~~~~~~~~~~~~~~   99 (205)
                      ....+.+....+.|..+.||++...+|..+++|+....   ....+.+|...++.+.+.++  ++++.....       .
T Consensus        18 ~~~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~-------~   87 (264)
T 1nd4_A           18 RLFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTE-------A   87 (264)
T ss_dssp             TTTTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEEC-------S
T ss_pred             hcCCCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccC-------C
Confidence            34456655444466679999998766788999997643   33557788988888865444  445554432       3


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCC------------------------------
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGI------------------------------  149 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~------------------------------  149 (205)
                      +..+++||+++|.++.  ...     .+.   ..++.+++..|..||...                              
T Consensus        88 ~~~~~v~e~i~G~~l~--~~~-----~~~---~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (264)
T 1nd4_A           88 GRDWLLLGEVPGQDLL--SSH-----LAP---AEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDD  157 (264)
T ss_dssp             SCEEEEEECCSSEETT--TSC-----CCH---HHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTS
T ss_pred             CCCEEEEEecCCcccC--cCc-----CCH---hHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchh
Confidence            5689999999998884  211     111   245666777777777621                              


Q ss_pred             -------------------------CCceeecCCccccEEeCCCCceeEcCCCchhhcc
Q 028725          150 -------------------------VPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  183 (205)
Q Consensus       150 -------------------------~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~  183 (205)
                                               ...++|+|++|.||+++.+..+.|+||+.+....
T Consensus       158 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~g~  216 (264)
T 1nd4_A          158 LDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVAD  216 (264)
T ss_dssp             CCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEEEE
T ss_pred             hhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcccCC
Confidence                                     1239999999999999877667799999986544

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=99.25  E-value=3.9e-11  Score=94.46  Aligned_cols=148  Identities=14%  Similarity=0.209  Sum_probs=102.9

Q ss_pred             CcceeeccCcceEEEEEEecCCcEEEEEEec--ccC-CcCHHHHHHHHHHHhccCC--CcccccccceeeecccCCCCCe
Q 028725           27 DTSAFMGEGSKGQMYRGRLKNGTFIAIRCLK--MKK-SHSTRNFMHHIELISKLRH--CHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        27 ~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~--~~~-~~~~~~~~~e~~~l~~l~~--~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ...+.++.|.++.||+.... +..+++|+..  ... ......+.+|..+++.+..  ..+++++..+.+.    ...+.
T Consensus        41 ~~~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~----~~~g~  115 (359)
T 3dxp_A           41 LSVEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDE----SVIGR  115 (359)
T ss_dssp             CEEEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCT----TTTSS
T ss_pred             ceEEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCC----CccCC
Confidence            34667899999999998865 4678888775  322 1223467789999988874  4456666655431    11245


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCC--------------------------------
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGI--------------------------------  149 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~--------------------------------  149 (205)
                      .++|||+++|.++.+...    ..++......++.+++..|..||.-.                                
T Consensus       116 ~~~vme~v~G~~l~~~~~----~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (359)
T 3dxp_A          116 AFYIMEFVSGRVLWDQSL----PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSET  191 (359)
T ss_dssp             CEEEEECCCCBCCCCTTC----TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCC
T ss_pred             eEEEEEecCCeecCCCcc----ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCC
Confidence            789999999977654211    24667777888899999999999620                                


Q ss_pred             -----------------------CCceeecCCccccEEeCCCCc--eeEcCCCchhhcc
Q 028725          150 -----------------------VPGVFSNNLKITDILLDQNLV--AKISSYNLPLLAE  183 (205)
Q Consensus       150 -----------------------~~~i~h~dlkp~nilv~~~~~--~~l~Dfg~a~~~~  183 (205)
                                             ...++|+|++|.||+++.++.  +.|+||+.+....
T Consensus       192 ~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g~  250 (359)
T 3dxp_A          192 ESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLGH  250 (359)
T ss_dssp             SCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEEEC
T ss_pred             cCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccccCC
Confidence                                   246899999999999997753  6899999986544

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.85  E-value=1.3e-08  Score=78.18  Aligned_cols=141  Identities=17%  Similarity=0.248  Sum_probs=90.9

Q ss_pred             ceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccC-CCcc--cccccceeeecccCCCCCeEEEE
Q 028725           29 SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHL--VSALGHCFECYFDDSSVSRIFLI  105 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-~~~i--~~~~~~~~~~~~~~~~~~~~~lv  105 (205)
                      .+.++.|....||...    ..+++|+....  .....+.+|...++.+. +..+  +++......    .......|+|
T Consensus        25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~----~~~~~~~~~v   94 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMP----SETYQMSFAG   94 (304)
T ss_dssp             CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCC----CSSCSCSCEE
T ss_pred             eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCC----CCCCCcceEE
Confidence            4568899999998763    45888886422  23466788999988873 3333  233222111    1111245889


Q ss_pred             EeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhc--------------------------------------
Q 028725          106 FEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT--------------------------------------  147 (205)
Q Consensus       106 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~--------------------------------------  147 (205)
                      |++++|.++.+....    .++......++.+++..+..||+                                      
T Consensus        95 m~~i~G~~l~~~~~~----~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
T 3sg8_A           95 FTKIKGVPLTPLLLN----NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQM  170 (304)
T ss_dssp             EECCCCEECCHHHHH----TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHH
T ss_pred             EcccCCeECCccccc----cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccH
Confidence            999999887653221    24444555555666666555553                                      


Q ss_pred             -----------------CCCCceeecCCccccEEeCC--CCceeEcCCCchhhcc
Q 028725          148 -----------------GIVPGVFSNNLKITDILLDQ--NLVAKISSYNLPLLAE  183 (205)
Q Consensus       148 -----------------~~~~~i~h~dlkp~nilv~~--~~~~~l~Dfg~a~~~~  183 (205)
                                       .....++|+|++|.||++++  ...+.|+||+.+....
T Consensus       171 ~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~  225 (304)
T 3sg8_A          171 KKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISD  225 (304)
T ss_dssp             HHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEEC
T ss_pred             HHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCC
Confidence                             11235799999999999997  5568899999986554

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.76  E-value=1.7e-07  Score=72.13  Aligned_cols=77  Identities=17%  Similarity=0.155  Sum_probs=51.8

Q ss_pred             cceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCC---cccccccceeeecccCCCCCeEEE
Q 028725           28 TSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHC---HLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        28 ~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~---~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      ..+.++.|....||..    +..+++|+..  .......+.+|..+++.+.+.   .+++.+..+.      ...+..++
T Consensus        23 ~v~~l~~G~~n~v~~v----g~~~VlR~~~--~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~------~~~g~~~~   90 (306)
T 3tdw_A           23 SVESLGEGFRNYAILV----NGDWVFRFPK--SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGK------RSDGNPFV   90 (306)
T ss_dssp             CEEEEEECSSEEEEEE----TTTEEEEEES--SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEE------CTTSCEEE
T ss_pred             eeeecCCCcceeEEEE----CCEEEEEecC--CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecc------cCCCceEE
Confidence            3456788888899987    5668888753  122346788899999998642   2334443332      12345789


Q ss_pred             EEeecCCCcHHH
Q 028725          105 IFEYVPNGTLRS  116 (205)
Q Consensus       105 v~e~~~~~~L~~  116 (205)
                      +|++++|.++.+
T Consensus        91 v~e~i~G~~l~~  102 (306)
T 3tdw_A           91 GYRKVQGQILGE  102 (306)
T ss_dssp             EEECCCSEECHH
T ss_pred             EEeccCCeECch
Confidence            999999988765

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.75  E-value=2e-07  Score=70.20  Aligned_cols=136  Identities=13%  Similarity=0.069  Sum_probs=86.7

Q ss_pred             eccCcc-eEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccC-CCcccccccceeeecccCCCCCeEEEEEee
Q 028725           32 MGEGSK-GQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVSRIFLIFEY  108 (205)
Q Consensus        32 lg~g~~-g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~  108 (205)
                      +..|.. +.||+.... ++..+++|+...   .....+.+|...++.+. +--+.+++..+.+       .+..++|||+
T Consensus        32 ~~~G~S~~~v~rl~~~~~~~~~~lk~~~~---~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~-------~~~~~lvme~  101 (272)
T 4gkh_A           32 DNVGQSGATIYRLYGKPNAPELFLKHGKG---SVANDVTDEMVRLNWLTAFMPLPTIKHFIRT-------PDDAWLLTTA  101 (272)
T ss_dssp             EECSSSSCEEEEEECCTTCCCEEEEEEET---HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEE-------TTEEEEEEEC
T ss_pred             ccCCCcCCeEEEEEecCCCeEEEEEECCC---CCHhHHHHHHHHHHHhccCCCcCeEEEEEEE-------CCeEEEEEEe
Confidence            333444 368887744 466788898752   23556778888888774 2234556666554       4678999999


Q ss_pred             cCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcC----------------------------------------
Q 028725          109 VPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTG----------------------------------------  148 (205)
Q Consensus       109 ~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~----------------------------------------  148 (205)
                      ++|.++.+......      .....+..++...|.-||.-                                        
T Consensus       102 l~G~~~~~~~~~~~------~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (272)
T 4gkh_A          102 IPGKTAFQVLEEYP------DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWP  175 (272)
T ss_dssp             CCSEEHHHHHHHCG------GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCC
T ss_pred             eCCccccccccCCH------HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchH
Confidence            99988776543211      01112333334444444421                                        


Q ss_pred             ---------------CCCceeecCCccccEEeCCCCceeEcCCCchhhcc
Q 028725          149 ---------------IVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  183 (205)
Q Consensus       149 ---------------~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~  183 (205)
                                     ....++|+|+.+.||+++..+.+-|+||+.+....
T Consensus       176 ~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~gd  225 (272)
T 4gkh_A          176 VEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIAD  225 (272)
T ss_dssp             HHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEEEE
T ss_pred             HHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccccCC
Confidence                           01237899999999999988778899999986544

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=98.59  E-value=3.2e-07  Score=71.89  Aligned_cols=83  Identities=11%  Similarity=0.063  Sum_probs=51.7

Q ss_pred             ceee-ccCcceEEEEEEec-------CCcEEEEEEecccC---CcCHHHHHHHHHHHhccCC---Ccccccccceeeecc
Q 028725           29 SAFM-GEGSKGQMYRGRLK-------NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRH---CHLVSALGHCFECYF   94 (205)
Q Consensus        29 ~~~l-g~g~~g~V~~~~~~-------~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~---~~i~~~~~~~~~~~~   94 (205)
                      .+.| +.|....+|.....       ++..+++|+.....   ......+.+|..+++.+..   -.+++++..+.+.  
T Consensus        25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~--  102 (357)
T 3ats_A           25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTG--  102 (357)
T ss_dssp             EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSS--
T ss_pred             EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCC--
Confidence            3567 78888999988753       25678888875332   1112456778888877742   2345555544321  


Q ss_pred             cCCCCCeEEEEEeecCCCcHH
Q 028725           95 DDSSVSRIFLIFEYVPNGTLR  115 (205)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~  115 (205)
                        ...+..+++||+++|.++.
T Consensus       103 --~~~g~~~~v~e~l~G~~l~  121 (357)
T 3ats_A          103 --DVLGTPFFLMDYVEGVVPP  121 (357)
T ss_dssp             --TTTSSCEEEEECCCCBCCC
T ss_pred             --CccCCceEEEEecCCCChh
Confidence              1113568999999886654

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=98.59  E-value=1.2e-06  Score=69.62  Aligned_cols=99  Identities=9%  Similarity=0.048  Sum_probs=58.6

Q ss_pred             CCCCCcccccCHHHHHHHhcCC--------CcceeeccCcceEEEEEEec-CCcEEEEEEecccC-------CcCHHHHH
Q 028725            5 ALGLPAYRTFSLEELEEATNNF--------DTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-------SHSTRNFM   68 (205)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~y--------~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-------~~~~~~~~   68 (205)
                      .+..+.+..++.+++......+        ...+.+|.|..+.||++... +++.+++|......       ......+.
T Consensus         3 ~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~   82 (397)
T 2olc_A            3 VTKTPLYETLNESSAVALAVKLGLFPSKSTLTCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRAR   82 (397)
T ss_dssp             --CCCCCCCCCHHHHHHHHHHTTC-----CCEEEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHH
T ss_pred             CCCCcccccCCHHHHHHHHHhcCcCCCCCceEEEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHH
Confidence            3455566667766665544322        13567899999999999743 46789999864321       12345567


Q ss_pred             HHHHHHhccCC--Cc-ccccccceeeecccCCCCCeEEEEEeecCCC
Q 028725           69 HHIELISKLRH--CH-LVSALGHCFECYFDDSSVSRIFLIFEYVPNG  112 (205)
Q Consensus        69 ~e~~~l~~l~~--~~-i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~  112 (205)
                      .|.++++.+..  +. +++++..  +       ....++|||++++.
T Consensus        83 ~E~~~L~~l~~~~~~~vP~~~~~--d-------~~~~~lvmE~l~g~  120 (397)
T 2olc_A           83 IESSALIRQGEHVPHLVPRVFYS--D-------TEMAVTVMEDLSHL  120 (397)
T ss_dssp             HHHHHHHHHHTTCGGGSCCEEEE--E-------TTTTEEEECCCTTS
T ss_pred             HHHHHHHHhhhhCCCCcCeEEEE--c-------CCccEEEEEeCCCc
Confidence            78888887642  33 2333322  1       22357999999764

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=98.33  E-value=4.7e-06  Score=64.57  Aligned_cols=32  Identities=13%  Similarity=0.169  Sum_probs=28.4

Q ss_pred             CceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          151 PGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       151 ~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      ..++|+|+.+.||+++.++.+.|+||+.+...
T Consensus       222 ~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~g  253 (346)
T 2q83_A          222 PNLCHQDYGTGNTLLGENEQIWVIDLDTVSFD  253 (346)
T ss_dssp             CCEECSSCSTTSEEECGGGCEEECCCTTCEEC
T ss_pred             CceecCCCCcccEEEeCCCcEEEEehhhcccC
Confidence            68999999999999988888999999988533

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=98.14  E-value=7.5e-05  Score=56.63  Aligned_cols=79  Identities=18%  Similarity=0.195  Sum_probs=56.3

Q ss_pred             cCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCC-c--ccccccceeeecccCCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHC-H--LVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~-~--i~~~~~~~~~~~~~~~~~~  100 (205)
                      ......+.+|.|..+.||+....+|+.+++|+...........+..|...|+.+... .  +++++..  .         
T Consensus        15 ~~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~--~---------   83 (288)
T 3f7w_A           15 REVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW--D---------   83 (288)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE--E---------
T ss_pred             CCeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec--c---------
Confidence            445667788999999999999888999999987655445556778899988887422 2  2333332  1         


Q ss_pred             eEEEEEeecCCCc
Q 028725          101 RIFLIFEYVPNGT  113 (205)
Q Consensus       101 ~~~lv~e~~~~~~  113 (205)
                      ..+++||++.++.
T Consensus        84 ~~~lv~e~l~~~~   96 (288)
T 3f7w_A           84 DRTLAMEWVDERP   96 (288)
T ss_dssp             TTEEEEECCCCCC
T ss_pred             CceEEEEeecccC
Confidence            2368899987653

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=98.12  E-value=5.1e-05  Score=58.38  Aligned_cols=167  Identities=12%  Similarity=0.166  Sum_probs=87.0

Q ss_pred             ccccCHHHHHHHhcCCCcc-----eeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcc--c
Q 028725           11 YRTFSLEELEEATNNFDTS-----AFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL--V   83 (205)
Q Consensus        11 ~~~~~~~~~~~~~~~y~~~-----~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i--~   83 (205)
                      +-.++.+++......|.+.     +.++.|....+|.....+| .+++|+....  .....+..|..++..+...++  +
T Consensus         4 ~~~~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~--~~~~~l~~e~~~l~~L~~~g~~vP   80 (322)
T 2ppq_A            4 YTDITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCP   80 (322)
T ss_dssp             -CCCCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCC
T ss_pred             cccCCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCCCC
Confidence            3456777887777778653     3456677789999886544 6888988642  122344556666665532222  2


Q ss_pred             ccccceeeecccCCCCCeEEEEEeecCCCcHHH---------------hhcc--C-CCC---CC---CHHHHHH------
Q 028725           84 SALGHCFECYFDDSSVSRIFLIFEYVPNGTLRS---------------WISG--H-AWQ---SL---TWTQRIS------  133 (205)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~---------------~~~~--~-~~~---~~---~~~~~~~------  133 (205)
                      +++........ ....+..++++++++|.++..               +...  . ...   ..   .|...+.      
T Consensus        81 ~~~~~~~g~~~-~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  159 (322)
T 2ppq_A           81 LPLPRKDGELL-GELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERA  159 (322)
T ss_dssp             CBCCBTTCCSC-EEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGG
T ss_pred             cccCCCCCCEE-EEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHH
Confidence            22211000000 001346789999998854311               1110  0 000   01   1111000      


Q ss_pred             ------HHHHHHHHHHHhhc----CCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          134 ------AAIGVARGIQFLHT----GIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       134 ------i~~~i~~~l~~lh~----~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                            +...+...+..+..    ....+++|+|+.+.||+++.+..+.|+||+.+..
T Consensus       160 ~~~~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~  217 (322)
T 2ppq_A          160 DEVEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN  217 (322)
T ss_dssp             GGTSTTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             HhhhhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence                  00112333444432    1235789999999999999876668999998753

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=98.03  E-value=9.2e-05  Score=57.00  Aligned_cols=76  Identities=9%  Similarity=0.064  Sum_probs=54.9

Q ss_pred             cceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccC---CCcccccccceeeecccCCCCCeEEE
Q 028725           28 TSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR---HCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        28 ~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      ..+.++.|....+|+... ++..+++|+....   ....+..|...++.+.   ...+++++..+..       .+..++
T Consensus        40 ~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~-------~g~~~l  108 (312)
T 3jr1_A           40 HKEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNS-------QGHSFL  108 (312)
T ss_dssp             EEEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEEC-------SSEEEE
T ss_pred             eeEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeec-------CCceEE
Confidence            346789999999999875 4678888987532   3566788888888774   2445566655433       457899


Q ss_pred             EEeecCCCcH
Q 028725          105 IFEYVPNGTL  114 (205)
Q Consensus       105 v~e~~~~~~L  114 (205)
                      +||++++.++
T Consensus       109 vme~l~G~~~  118 (312)
T 3jr1_A          109 LLEALNKSKN  118 (312)
T ss_dssp             EEECCCCCCC
T ss_pred             EEEeccCCCC
Confidence            9999988654

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=98.02  E-value=4e-05  Score=58.55  Aligned_cols=74  Identities=9%  Similarity=0.041  Sum_probs=44.7

Q ss_pred             CCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCccc-ccccceeeecccCCCCCeEEE
Q 028725           26 FDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV-SALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~-~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      |.-.+.|+.|....+|+.     ..+++|+....... .....+|...++.+...++. +++...         ...-++
T Consensus        20 ~~~i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~-~~~r~~E~~~l~~l~~~g~~P~~~~~~---------~~~~~~   84 (301)
T 3dxq_A           20 YTGPLERLGGLTNLVFRA-----GDLCLRIPGKGTEE-YINRANEAVAAREAAKAGVSPEVLHVD---------PATGVM   84 (301)
T ss_dssp             CCSCEEEESCSSEEEEEE-----TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEEC---------TTTCCE
T ss_pred             ccceeEcCCcccccccee-----eeEEEECCCCCccc-eeCHHHHHHHHHHHHHcCCCCceEEEE---------CCCCEE
Confidence            445788999999999998     45888888643221 22335677777766533333 344322         122367


Q ss_pred             EEeec-CCCcH
Q 028725          105 IFEYV-PNGTL  114 (205)
Q Consensus       105 v~e~~-~~~~L  114 (205)
                      ++|++ ++.++
T Consensus        85 v~e~i~~g~~l   95 (301)
T 3dxq_A           85 VTRYIAGAQTM   95 (301)
T ss_dssp             EEECCTTCEEC
T ss_pred             EEeecCCCccC
Confidence            89999 66544

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=97.94  E-value=0.00014  Score=58.22  Aligned_cols=33  Identities=6%  Similarity=0.237  Sum_probs=28.7

Q ss_pred             CceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          151 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       151 ~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ..++|+|++|.||+++.++ +.++||+.+.....
T Consensus       232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p  264 (420)
T 2pyw_A          232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPM  264 (420)
T ss_dssp             CEEECSCCSGGGEEECSSC-EEECCCTTCEEECH
T ss_pred             CeEEecCCCCCcEEEeCCC-CEEEeCcccccCch
Confidence            6899999999999998776 99999998865553

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=97.88  E-value=0.00054  Score=52.69  Aligned_cols=166  Identities=6%  Similarity=0.067  Sum_probs=89.0

Q ss_pred             ccccCHHHHHHHhcCCCc-----ceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCc--cc
Q 028725           11 YRTFSLEELEEATNNFDT-----SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH--LV   83 (205)
Q Consensus        11 ~~~~~~~~~~~~~~~y~~-----~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~--i~   83 (205)
                      +...+.+.+......|.+     ...++ |....||.....+|+.+++|..... ......+..|..++..+...+  ++
T Consensus         8 ~~~l~~~~i~~~l~~~g~~~~~~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~-~~~~~~~~~E~~~~~~L~~~g~~vp   85 (328)
T 1zyl_A            8 FQTLHPDTIMDALFEHGIRVDSGLTPLN-SYENRVYQFQDEDRRRFVVKFYRPE-RWTADQILEEHQFALQLVNDEVPVA   85 (328)
T ss_dssp             CCCCCHHHHHHHHHHTTCCCCSCCEEEC-CSSSEEEEECCTTCCCEEEEEECTT-TSCHHHHHHHHHHHHHHHHTTCSBC
T ss_pred             CCCCCHHHHHHHHHHcCCCCCceEEeec-CcccceEEEEcCCCCEEEEEEcCCC-CCCHHHHHHHHHHHHHHHHcCCeec
Confidence            345566666666555533     23466 7778999887666778999998632 123455666777777664222  23


Q ss_pred             ccccceeeecccCCCCCeEEEEEeecCCCcHH-----Hh------h-------ccCC---CCCCCHHHH-----------
Q 028725           84 SALGHCFECYFDDSSVSRIFLIFEYVPNGTLR-----SW------I-------SGHA---WQSLTWTQR-----------  131 (205)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~-----~~------~-------~~~~---~~~~~~~~~-----------  131 (205)
                      +++..  +...-....+..+.++++++|.++.     ..      +       ....   ....+....           
T Consensus        86 ~~~~~--~g~~~~~~~g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  163 (328)
T 1zyl_A           86 APVAF--NGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDA  163 (328)
T ss_dssp             CCCCB--TTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTC
T ss_pred             ceeec--CCcEEEEECCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhc
Confidence            33321  1000000134678899999875432     11      0       0000   011121110           


Q ss_pred             -----------HHHHHHHHHHHHHhh-cCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          132 -----------ISAAIGVARGIQFLH-TGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       132 -----------~~i~~~i~~~l~~lh-~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                                 ...+.+++..+.-+- ......++|+|+++.||+++ + .+.|+||+.+...
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~g  224 (328)
T 1zyl_A          164 TLIPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARNG  224 (328)
T ss_dssp             SSSCTTTHHHHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCEE
T ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCcC
Confidence                       011111222222111 11225789999999999999 4 8999999887543

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=97.71  E-value=0.00027  Score=56.79  Aligned_cols=72  Identities=15%  Similarity=0.201  Sum_probs=46.8

Q ss_pred             ceeeccCcceEEEEEEecC--------CcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcc-cccccceeeecccCCCC
Q 028725           29 SAFMGEGSKGQMYRGRLKN--------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL-VSALGHCFECYFDDSSV   99 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~~--------~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i-~~~~~~~~~~~~~~~~~   99 (205)
                      .+.|+.|....+|++...+        +..+++|+....  .....+..|..+++.+...++ +++++.+.         
T Consensus        78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~---------  146 (429)
T 1nw1_A           78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFS---------  146 (429)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEET---------
T ss_pred             EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeC---------
Confidence            4567788889999998642        478999988422  122556678888888754444 34444321         


Q ss_pred             CeEEEEEeecCCCc
Q 028725          100 SRIFLIFEYVPNGT  113 (205)
Q Consensus       100 ~~~~lv~e~~~~~~  113 (205)
                      +  .+++||++|.+
T Consensus       147 ~--g~v~e~l~G~~  158 (429)
T 1nw1_A          147 G--GRLEEYIPSRP  158 (429)
T ss_dssp             T--EEEECCCCEEE
T ss_pred             C--CEEEEEeCCcc
Confidence            1  27889997643

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=97.69  E-value=0.00095  Score=51.52  Aligned_cols=34  Identities=6%  Similarity=0.065  Sum_probs=28.7

Q ss_pred             CceeecCCccccEEeCCC----CceeEcCCCchhhccc
Q 028725          151 PGVFSNNLKITDILLDQN----LVAKISSYNLPLLAEN  184 (205)
Q Consensus       151 ~~i~h~dlkp~nilv~~~----~~~~l~Dfg~a~~~~~  184 (205)
                      ..++|+|+.+.||+++.+    +.+.|+||+.+.....
T Consensus       183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G~~  220 (333)
T 3csv_A          183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGHR  220 (333)
T ss_dssp             CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEECT
T ss_pred             CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcCCC
Confidence            579999999999999874    6899999998865443

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=97.63  E-value=0.001  Score=53.96  Aligned_cols=74  Identities=12%  Similarity=0.011  Sum_probs=45.5

Q ss_pred             ceeeccCcceEEEEEEecC-CcEEEEEEecccCCcCHHHHHHHHHHHhccCCCccc-ccccceeeecccCCCCCeEEEEE
Q 028725           29 SAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV-SALGHCFECYFDDSSVSRIFLIF  106 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~~-~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~-~~~~~~~~~~~~~~~~~~~~lv~  106 (205)
                      .+.|+.|-...+|++...+ +..+++|+...... ..-...+|..++..+...++. ++++.+.         +  ..++
T Consensus       113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~-~~idR~~E~~vl~~L~~~gl~P~ll~~~~---------~--G~v~  180 (458)
T 2qg7_A          113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTD-EIINREREKKISCILYNKNIAKKIYVFFT---------N--GRIE  180 (458)
T ss_dssp             EEEECC--CEEEEEEEETTTTEEEEEEEECC-CC-SCSCHHHHHHHHHHHTTSSSBCCEEEEET---------T--EEEE
T ss_pred             EEEcCCCeEeEEEEEEECCCCceEEEEECCCChh-hhcCHHHHHHHHHHHHhcCCCCCEEEEeC---------C--eEEE
Confidence            4567788889999998754 47889998853322 222235788888888655553 4444331         1  2499


Q ss_pred             eecCCCcH
Q 028725          107 EYVPNGTL  114 (205)
Q Consensus       107 e~~~~~~L  114 (205)
                      ||++|.++
T Consensus       181 e~I~G~~l  188 (458)
T 2qg7_A          181 EFMDGYAL  188 (458)
T ss_dssp             ECCCSEEC
T ss_pred             EeeCCccC
Confidence            99987544

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=97.47  E-value=0.00078  Score=53.23  Aligned_cols=143  Identities=10%  Similarity=0.066  Sum_probs=80.8

Q ss_pred             ceeeccCcceEEEEEEec--------CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcc-cccccceeeecccCCCC
Q 028725           29 SAFMGEGSKGQMYRGRLK--------NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL-VSALGHCFECYFDDSSV   99 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~--------~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i-~~~~~~~~~~~~~~~~~   99 (205)
                      .+.+..|....+|++...        +++.+++|+... .......+.+|..+++.+...++ +++++.+.         
T Consensus        55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~-~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~---------  124 (379)
T 3feg_A           55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGA-ILQGVDSLVLESVMFAILAERSLGPQLYGVFP---------  124 (379)
T ss_dssp             CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEET---------
T ss_pred             EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCC-ccchHHHHHHHHHHHHHHHhcCCCCeEEEEcC---------
Confidence            345677888889998864        247899998732 23345667789998888854344 34444331         


Q ss_pred             CeEEEEEeecCCCcHHHh--------------hc----cC-C-CCCC--CHHHHHHHHHHHHH-----------------
Q 028725          100 SRIFLIFEYVPNGTLRSW--------------IS----GH-A-WQSL--TWTQRISAAIGVAR-----------------  140 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~--------------~~----~~-~-~~~~--~~~~~~~i~~~i~~-----------------  140 (205)
                      +  .+|+|+++|.++..-              +.    .. . +...  -+..+..+..++..                 
T Consensus       125 ~--g~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l  202 (379)
T 3feg_A          125 E--GRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSL  202 (379)
T ss_dssp             T--EEEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTH
T ss_pred             C--ccEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHH
Confidence            1  289999987554311              00    00 0 0111  23344444433321                 


Q ss_pred             --HHHH----hhc-CCCCceeecCCccccEEeCCC----CceeEcCCCchhhcc
Q 028725          141 --GIQF----LHT-GIVPGVFSNNLKITDILLDQN----LVAKISSYNLPLLAE  183 (205)
Q Consensus       141 --~l~~----lh~-~~~~~i~h~dlkp~nilv~~~----~~~~l~Dfg~a~~~~  183 (205)
                        .+..    |.. .....++|+|+.+.||+++.+    +.+.++||..+....
T Consensus       203 ~~~~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~~~  256 (379)
T 3feg_A          203 KDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSYNY  256 (379)
T ss_dssp             HHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEEEE
T ss_pred             HHHHHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCcCC
Confidence              1222    221 122468999999999999876    789999999885433

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=97.43  E-value=0.0019  Score=50.14  Aligned_cols=34  Identities=15%  Similarity=0.280  Sum_probs=29.1

Q ss_pred             CceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          151 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       151 ~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ..++|+|+.+.||+++.++.+.|+||+.+.....
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~~~  239 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPMLAPK  239 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEEECT
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCeeCCH
Confidence            5789999999999999888899999988765443

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=97.35  E-value=0.00057  Score=53.64  Aligned_cols=74  Identities=16%  Similarity=0.122  Sum_probs=41.8

Q ss_pred             ceeeccCcceEEEEEEecC---------CcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcc-cccccceeeecccCCC
Q 028725           29 SAFMGEGSKGQMYRGRLKN---------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL-VSALGHCFECYFDDSS   98 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~~---------~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i-~~~~~~~~~~~~~~~~   98 (205)
                      .+.++.|....+|+....+         +..+++|+...... .......|..+++.+...++ +++++..         
T Consensus        38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~-~~~~~~~E~~~l~~L~~~g~~P~~~~~~---------  107 (369)
T 3c5i_A           38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVD-ELYNTISEFEVYKTMSKYKIAPQLLNTF---------  107 (369)
T ss_dssp             EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGG-GTSCHHHHHHHHHHHHHTTSSCCEEEEE---------
T ss_pred             EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCcc-ceecHHHHHHHHHHHHhcCCCCceEEec---------
Confidence            4466778888999988543         26888888753321 11234567777777754343 3444321         


Q ss_pred             CCeEEEEEeecCCCcH
Q 028725           99 VSRIFLIFEYVPNGTL  114 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L  114 (205)
                      .  -++++++++|.++
T Consensus       108 ~--~~~v~e~i~G~~l  121 (369)
T 3c5i_A          108 N--GGRIEEWLYGDPL  121 (369)
T ss_dssp             T--TEEEEECCCSEEC
T ss_pred             C--CcEEEEEecCCcC
Confidence            1  2679999987543

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=96.79  E-value=0.011  Score=47.27  Aligned_cols=74  Identities=12%  Similarity=0.087  Sum_probs=46.9

Q ss_pred             ceeeccCcceEEEEEEecC--------CcEEEEEEecccCCcCHHHHHHHHHHHhccCCCccc-ccccceeeecccCCCC
Q 028725           29 SAFMGEGSKGQMYRGRLKN--------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV-SALGHCFECYFDDSSV   99 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~~--------~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~-~~~~~~~~~~~~~~~~   99 (205)
                      .+.+..|....+|+....+        ++.+++|+..... ...-+..+|..+++.+...++. ++++.+         .
T Consensus        75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t-~~~idR~~E~~~l~~L~~~gi~P~l~~~~---------~  144 (424)
T 3mes_A           75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV-GKFYDSKVELDVFRYLSNINIAPNIIADF---------P  144 (424)
T ss_dssp             EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC--CCCCHHHHHHHHHHHHHTTSSCCEEEEE---------T
T ss_pred             EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc-chhcCHHHHHHHHHHHHhcCCCCCEEEEc---------C
Confidence            4567778888999988652        5789999875332 2223446788888877543443 344322         1


Q ss_pred             CeEEEEEeecCCCcH
Q 028725          100 SRIFLIFEYVPNGTL  114 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L  114 (205)
                        -+.|++|++|.++
T Consensus       145 --~~~I~efI~G~~l  157 (424)
T 3mes_A          145 --EGRIEEFIDGEPL  157 (424)
T ss_dssp             --TEEEEECCCSEEC
T ss_pred             --CCEEEEEeCCccC
Confidence              2688999988653

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=92.28  E-value=0.091  Score=41.62  Aligned_cols=32  Identities=13%  Similarity=0.128  Sum_probs=25.9

Q ss_pred             ceeecCCccccEEe------CCCCceeEcCCCchhhcc
Q 028725          152 GVFSNNLKITDILL------DQNLVAKISSYNLPLLAE  183 (205)
Q Consensus       152 ~i~h~dlkp~nilv------~~~~~~~l~Dfg~a~~~~  183 (205)
                      -++|+|+.+.||++      ++...+.++||..|....
T Consensus       245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~n~  282 (401)
T 3g15_A          245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYNY  282 (401)
T ss_dssp             EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEEEE
T ss_pred             eeEEecCCCCeEEEecCcccCcCCeEEEechHhccCCC
Confidence            35799999999999      345679999999885433

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=85.33  E-value=1.8  Score=31.23  Aligned_cols=73  Identities=11%  Similarity=0.040  Sum_probs=51.3

Q ss_pred             CCeEEEEEeecC-CCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHH-HhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           99 VSRIFLIFEYVP-NGTLRSWISGHAWQSLTWTQRISAAIGVARGIQ-FLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        99 ~~~~~lv~e~~~-~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~-~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                      .+.+.+.++.-+ ..++... .     ..+....+.++.+++.... +++.     -+|--++|+|++++.++.+++.-.
T Consensus        60 eD~~~i~y~~~~~~~~f~~i-~-----~~~~~eKlrll~nl~~L~~~~~~~-----r~tf~l~P~NL~f~~~~~p~i~hR  128 (219)
T 4ano_A           60 EDEVKVVIKPPSSFLTFAAI-R-----KTTLLSRIRAAIHLVSKVKHHSAR-----RLIFIVCPENLMFNRALEPFFLHV  128 (219)
T ss_dssp             SSEEEEEEECCTTCEEHHHH-H-----TSCHHHHHHHHHHHHHHHSSCCSS-----SEECCCCGGGEEECTTCCEEESCC
T ss_pred             CCEEEEEEEcCcccCcHHHH-H-----hcCHHHHHHHHHHHHHHHHHhhhC-----ceeEEEeCceEEEeCCCcEEEEEc
Confidence            345555555442 3355533 2     4667888888888887666 4443     457789999999999999999999


Q ss_pred             Cchhhc
Q 028725          177 NLPLLA  182 (205)
Q Consensus       177 g~a~~~  182 (205)
                      |+-..+
T Consensus       129 Gi~~~l  134 (219)
T 4ano_A          129 GVKESL  134 (219)
T ss_dssp             EETTTB
T ss_pred             CCcccC
Confidence            985444

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=82.13  E-value=0.12  Score=41.80  Aligned_cols=61  Identities=5%  Similarity=-0.061  Sum_probs=16.1

Q ss_pred             cceeeccCcceEEEEEEecC-CcEEEE------EEecccC--CcCHHHHHHHHHHHhccCCCcccccccceee
Q 028725           28 TSAFMGEGSKGQMYRGRLKN-GTFIAI------RCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFE   91 (205)
Q Consensus        28 ~~~~lg~g~~g~V~~~~~~~-~~~vai------K~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   91 (205)
                      +.+.+|   ||.||+|.+.. ..+||+      |..+...  ......+.++..+.+..+|||+++..++...
T Consensus       146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~  215 (463)
T 3cxl_A          146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH  215 (463)
T ss_dssp             STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred             ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence            345555   99999999753 346777      5554322  2233467778888888899999888775543

>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3

Probab=81.14  E-value=11  Score=29.02  Aligned_cols=149  Identities=10%  Similarity=0.012  Sum_probs=71.6

Q ss_pred             cceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccc----------eeeecc---
Q 028725           28 TSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGH----------CFECYF---   94 (205)
Q Consensus        28 ~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~----------~~~~~~---   94 (205)
                      .++....|. +.||.+.. ++..+++|..   .....+.+..++...-.+.-|+.--+...          ......   
T Consensus        73 ~I~~s~~Gs-tgvff~~t-d~~~~VVK~s---~~l~~E~l~s~LA~~LGlpiP~~Riv~~~~~E~~e~~~~L~~~~~~~~  147 (342)
T 1cja_A           73 GIERSEKGT-EGLFFVET-ESGVFIVKRS---TNIESETFCSLLCMRLGLHAPKVRVVSSNSEEGTNMLECLAAIDKSFR  147 (342)
T ss_dssp             EEEECCSTT-SCEEEEEE-SSCEEEEECC---TTHHHHHHHHHHHHHHTCCCCCEEEEESSSHHHHHHHHHHHHHCSSSC
T ss_pred             EEEeccCCC-CCeEEEEe-CCCEEEEeCc---HHHHHHHHHHHHHHHhCCCCCCeeEEeeCcHHHHHHHHHHHHhhhhhH
Confidence            334445555 45665554 4778888844   22233444445555555555552111100          000000   


Q ss_pred             --cCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHH-HhhcCCCCceee-cCCccccEEeCCCC-
Q 028725           95 --DDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQ-FLHTGIVPGVFS-NNLKITDILLDQNL-  169 (205)
Q Consensus        95 --~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~-~lh~~~~~~i~h-~dlkp~nilv~~~~-  169 (205)
                        ........+++|+|.+|..|.+.-...-...+.......+.+  +-++. ++++.+..+... .--.+.||+++.++ 
T Consensus       148 ~l~~l~~~~~~l~meyv~G~~L~e~~~~~~~~~f~~~~~k~LG~--Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~~~n~  225 (342)
T 1cja_A          148 VITTLANQANILLMELVRGITLNKLTTTSAPEVLTKSTMQQLGS--LMALDVIVNNSDRLPIAWTNEGNLDNIMLSERGA  225 (342)
T ss_dssp             HHHHHTTCSEEEEEECCCEEESTTCCSSSHHHHSCHHHHHHHHH--HHHHHHHHTCCSSSCSSSCSCCCGGGEEEESBTT
T ss_pred             HHHHhhcccceehhhhcCCCccccchhhhhhhhcCHHHHHhhch--hheehhhhcCCccCcccccCCCChhheEEeCCCC
Confidence              001123567999999876655432211001123332222111  12233 344433333222 23688999998654 


Q ss_pred             ceeEcCCCchhhcc
Q 028725          170 VAKISSYNLPLLAE  183 (205)
Q Consensus       170 ~~~l~Dfg~a~~~~  183 (205)
                      .+.++|-+++..-+
T Consensus       226 ~~~~IDhn~af~~~  239 (342)
T 1cja_A          226 TVVPIDSKIIPLDA  239 (342)
T ss_dssp             CEEECSCCCCCCCS
T ss_pred             eEEEEcCCccccCC
Confidence            58999999986543

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=80.41  E-value=3  Score=29.94  Aligned_cols=53  Identities=9%  Similarity=0.125  Sum_probs=42.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          125 SLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       125 ~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      ..+....+.++.+++....+++.     -+|--++|+|++++.++.+++.--|+-..+
T Consensus        77 ~~~~~eKlr~l~ni~~l~~~~~~-----r~tf~L~P~NL~f~~~~~p~i~~RGik~~l  129 (215)
T 4ann_A           77 SFTKNEKLRYLLNIKNLEEVNRT-----RYTFVLAPDELFFTRDGLPIAKTRGLQNVV  129 (215)
T ss_dssp             GSCHHHHHHHHHHGGGGGGGGGS-----SEECCCSGGGEEECTTSCEEESCCEETTTB
T ss_pred             hcCHHHHHHHHHHHHHHHHHhcC-----ceEEEEecceEEEcCCCCEEEEEccCccCC
Confidence            36678888899998887755543     457789999999999999999999875433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	205
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	1e-26
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	2e-26
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	8e-26
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	2e-25
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	7e-25
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	8e-25
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	6e-24
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	7e-24
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	5e-23
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	6e-23
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	1e-22
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	8e-22
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-21
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	5e-21
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-20
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	4e-20
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	7e-20
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	8e-20
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-19
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	3e-19
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	4e-19
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	5e-19
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	8e-19
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	9e-19
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-18
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	3e-18
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	5e-18
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	5e-18
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	7e-18
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	7e-18
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	7e-18
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	9e-18
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	2e-17
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	3e-17
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	3e-17
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	4e-17
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	1e-16
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	4e-16
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	4e-16
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	6e-16
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	3e-15
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	4e-15
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	5e-15
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	3e-14
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	4e-14
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	6e-14
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	6e-13
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	9e-13
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-12
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	3e-12
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	4e-12
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	6e-12
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-11
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	4e-11
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	4e-11
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-10
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	2e-09
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	1e-06

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (251), Expect = 1e-26
 Identities = 46/202 (22%), Positives = 83/202 (41%), Gaps = 25/202 (12%)

Query: 13  TFSLEELEEATNNFDTSAFM---------GEGSKGQMYRGRLK----NGTFIAIRCLKMK 59
            F+ E+  EA   F     +         G G  G++  G LK       F+AI+ LK  
Sbjct: 6   PFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSG 65

Query: 60  KSHST-RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI 118
            +    R+F+    ++ +  H +++       E     S+   + +I E++ NG+L S++
Sbjct: 66  YTEKQRRDFLSEASIMGQFDHPNVIH-----LEGVVTKST--PVMIITEFMENGSLDSFL 118

Query: 119 SGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
             +     T  Q +    G+A G+++L           +L   +IL++ NLV K+S + L
Sbjct: 119 RQN-DGQFTVIQLVGMLRGIAAGMKYLAD---MNYVHRDLAARNILVNSNLVCKVSDFGL 174

Query: 179 PLLAENAEKVGHVTPYSGSINP 200
               E+       T   G   P
Sbjct: 175 SRFLEDDTSDPTYTSALGGKIP 196

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.7 bits (248), Expect = 2e-26
 Identities = 33/162 (20%), Positives = 73/162 (45%), Gaps = 12/162 (7%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G+G  G +  G  + G  +A++C+K     + + F+    ++++LRH +LV  LG   E 
Sbjct: 16  GKGEFGDVMLGDYR-GNKVAVKCIK--NDATAQAFLAEASVMTQLRHSNLVQLLGVIVE- 71

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG 152
                    ++++ EY+  G+L  ++       L     +  ++ V   +++L       
Sbjct: 72  -----EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG---NN 123

Query: 153 VFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPY 194
               +L   ++L+ ++ VAK+S + L   A + +  G +   
Sbjct: 124 FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVK 165

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.0 bits (246), Expect = 8e-26
 Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 12/178 (6%)

Query: 9   PAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFM 68
           P  +  + +  E    +      +G+G  G+++ G     T +AI+ LK   + S   F+
Sbjct: 2   PQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFL 60

Query: 69  HHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTW 128
              +++ KLRH  LV              S   I+++ EY+  G+L  ++ G   + L  
Sbjct: 61  QEAQVMKKLRHEKLVQLYAVV--------SEEPIYIVTEYMSKGSLLDFLKGETGKYLRL 112

Query: 129 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
            Q +  A  +A G+ ++           +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 113 PQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 167

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (242), Expect = 2e-25
 Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 12/154 (7%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G G  G+++ G     T +A++ LK + S S   F+    L+ +L+H  LV       + 
Sbjct: 22  GAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ- 79

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG 152
                    I++I EY+ NG+L  ++   +   LT  + +  A  +A G+ F+       
Sbjct: 80  -------EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE---RN 129

Query: 153 VFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
               +L+  +IL+   L  KI+ + L  L E+ E
Sbjct: 130 YIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 163

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.2 bits (239), Expect = 7e-25
 Identities = 31/182 (17%), Positives = 68/182 (37%), Gaps = 12/182 (6%)

Query: 17  EELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISK 76
           ++ E           +G GS G +Y+G+      + +  +        + F + + ++ K
Sbjct: 1   DDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK 60

Query: 77  LRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAI 136
            RH +++  +G+             + ++ ++    +L   +           + I  A 
Sbjct: 61  TRHVNILLFMGYSTAPQ--------LAIVTQWCEGSSLYHHLHII-ETKFEMIKLIDIAR 111

Query: 137 GVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSG 196
             A+G+ +LH      +   +LK  +I L ++L  KI  + L  +             SG
Sbjct: 112 QTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSG 168

Query: 197 SI 198
           SI
Sbjct: 169 SI 170

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.9 bits (238), Expect = 8e-25
 Identities = 28/164 (17%), Positives = 69/164 (42%), Gaps = 12/164 (7%)

Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHH 70
            + + ++ E    +      +G G  G++Y G  K     +A++ LK + +     F+  
Sbjct: 5   SSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKE 63

Query: 71  IELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQ 130
             ++ +++H +LV  LG C             ++I E++  G L  ++     Q ++   
Sbjct: 64  AAVMKEIKHPNLVQLLGVCTRE-------PPFYIITEFMTYGNLLDYLRECNRQEVSAVV 116

Query: 131 RISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 174
            +  A  ++  +++L           +L   + L+ +N + K++
Sbjct: 117 LLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVA 157

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (233), Expect = 6e-24
 Identities = 36/168 (21%), Positives = 80/168 (47%), Gaps = 13/168 (7%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G+G  G+++RG+ + G  +A++    ++  S       I     LRH +++  +    + 
Sbjct: 12  GKGRFGEVWRGKWR-GEEVAVKIFSSREERSWF-REAEIYQTVMLRHENILGFIAADNK- 68

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIV-- 150
             D+ + ++++L+ +Y  +G+L  +++ +   ++T    I  A+  A G+  LH  IV  
Sbjct: 69  --DNGTWTQLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGT 123

Query: 151 ---PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYS 195
              P +   +LK  +IL+ +N    I+   L +  ++A     + P  
Sbjct: 124 QGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNH 171

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.2 bits (231), Expect = 7e-24
 Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 12/155 (7%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV 83
            +      +G G  G +  G+ +    +AI+ +K + S S   F+   +++  L H  LV
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLV 62

Query: 84  SALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQ 143
              G C +          IF+I EY+ NG L +++           Q +     V   ++
Sbjct: 63  QLYGVCTKQ-------RPIFIITEYMANGCLLNYLR-EMRHRFQTQQLLEMCKDVCEAME 114

Query: 144 FLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           +L +         +L   + L++   V K+S + L
Sbjct: 115 YLES---KQFLHRDLAARNCLVNDQGVVKVSDFGL 146

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.9 bits (225), Expect = 5e-23
 Identities = 33/163 (20%), Positives = 66/163 (40%), Gaps = 12/163 (7%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV 83
           +       +G G  G ++ G   N   +AI+ ++ + + S  +F+   E++ KL H  LV
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLV 63

Query: 84  SALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQ 143
              G C E        + I L+FE++ +G L  ++             +   + V  G  
Sbjct: 64  QLYGVCLEQ-------APICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEG-- 113

Query: 144 FLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
            +       V   +L   + L+ +N V K+S + +     + +
Sbjct: 114 -MAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ 155

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.7 bits (227), Expect = 6e-23
 Identities = 24/158 (15%), Positives = 68/158 (43%), Gaps = 13/158 (8%)

Query: 19  LEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRN-FMHHIELISK 76
           +E   ++F+  + +G G+ G +++   K +G  +A + + ++   + RN  +  ++++ +
Sbjct: 1   MELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHE 60

Query: 77  LRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAI 136
               ++V   G  +           I +  E++  G+L   +       +        +I
Sbjct: 61  CNSPYIVGFYGAFYSD-------GEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSI 111

Query: 137 GVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 174
            V +G+ +L       +   ++K ++IL++     K+ 
Sbjct: 112 AVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLC 147

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 90.7 bits (224), Expect = 1e-22
 Identities = 42/213 (19%), Positives = 82/213 (38%), Gaps = 39/213 (18%)

Query: 15  SLEELEEATNNFDTSAFMGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHSTR-NF 67
            L  LE   NN +    +GEG+ G++++ R          T +A++ LK + S   + +F
Sbjct: 4   KLLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADF 63

Query: 68  MHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH------ 121
                L+++  + ++V  LG C            + L+FEY+  G L  ++         
Sbjct: 64  QREAALMAEFDNPNIVKLLGVCAVG-------KPMCLLFEYMAYGDLNEFLRSMSPHTVC 116

Query: 122 ----------------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL 165
                               L+  +++  A  VA G+ +L           +L   + L+
Sbjct: 117 SLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE---RKFVHRDLATRNCLV 173

Query: 166 DQNLVAKISSYNLPLLAENAEKVGHVTPYSGSI 198
            +N+V KI+ + L     +A+        +  I
Sbjct: 174 GENMVVKIADFGLSRNIYSADYYKADGNDAIPI 206

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (218), Expect = 8e-22
 Identities = 23/147 (15%), Positives = 64/147 (43%), Gaps = 12/147 (8%)

Query: 33  GEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G+G+ G++Y+ + K      A + +  K      ++M  I++++   H ++V       +
Sbjct: 21  GDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIV----KLLD 76

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
            ++ +   + ++++ E+   G + + +     + LT +Q           + +LH     
Sbjct: 77  AFYYE---NNLWILIEFCAGGAVDAVMLELE-RPLTESQIQVVCKQTLDALNYLHD---N 129

Query: 152 GVFSNNLKITDILLDQNLVAKISSYNL 178
            +   +LK  +IL   +   K++ + +
Sbjct: 130 KIIHRDLKAGNILFTLDGDIKLADFGV 156

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (214), Expect = 2e-21
 Identities = 33/184 (17%), Positives = 72/184 (39%), Gaps = 18/184 (9%)

Query: 25  NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCH 81
           +++    +G GS G+  + R K +G  +  + L          +  +  + L+ +L+H +
Sbjct: 5   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN 64

Query: 82  LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAW--QSLTWTQRISAAIGVA 139
           +V      +     D + + ++++ EY   G L S I+      Q L     +     + 
Sbjct: 65  IV-----RYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLT 119

Query: 140 RGIQFLH--TGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGS 197
             ++  H  +     V   +LK  ++ LD     K+  + L      A  + H T ++ +
Sbjct: 120 LALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGL------ARILNHDTSFAKA 173

Query: 198 INPT 201
              T
Sbjct: 174 FVGT 177

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 86.2 bits (213), Expect = 5e-21
 Identities = 29/146 (19%), Positives = 59/146 (40%), Gaps = 16/146 (10%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHST---RNFMHHIELISKLRHCHLVSALGH 88
           G GS G +Y  R ++N   +AI+ +      S    ++ +  +  + KLRH + +     
Sbjct: 24  GHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTI----Q 79

Query: 89  CFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTG 148
              CY  +      +L+ EY               + L   +  +   G  +G+ +LH+ 
Sbjct: 80  YRGCYLRE---HTAWLVMEYCLGSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLHS- 133

Query: 149 IVPGVFSNNLKITDILLDQNLVAKIS 174
               +   ++K  +ILL +  + K+ 
Sbjct: 134 --HNMIHRDVKAGNILLSEPGLVKLG 157

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.4 bits (208), Expect = 2e-20
 Identities = 32/167 (19%), Positives = 67/167 (40%), Gaps = 17/167 (10%)

Query: 17  EELEEATNNFDTSAF-MGEGSKGQMYRGRLK---NGTFIAIRCLKMKKSHS-TRNFMHHI 71
           ++L    +N   +   +G G+ G + +G  +       +AI+ LK     + T   M   
Sbjct: 1   KKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREA 60

Query: 72  ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQR 131
           +++ +L + ++V  +G C            + L+ E    G L  ++ G   + +  +  
Sbjct: 61  QIMHQLDNPYIVRLIGVCQAE--------ALMLVMEMAGGGPLHKFLVGK-REEIPVSNV 111

Query: 132 ISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
                 V+ G+++L           +L   ++LL     AKIS + L
Sbjct: 112 AELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFGL 155

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.3 bits (205), Expect = 4e-20
 Identities = 32/151 (21%), Positives = 60/151 (39%), Gaps = 17/151 (11%)

Query: 33  GEGSKGQMYRGRLKN----GTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALG 87
           GEG  G +++G   +       +AI+  K   S S R  F+     + +  H H+V  +G
Sbjct: 16  GEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIG 75

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT 147
              E          +++I E    G LRS++      SL     I  A  ++  + +L +
Sbjct: 76  VITENP--------VWIIMELCTLGELRSFLQVR-KYSLDLASLILYAYQLSTALAYLES 126

Query: 148 GIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
                    ++   ++L+  N   K+  + L
Sbjct: 127 ---KRFVHRDIAARNVLVSSNDCVKLGDFGL 154

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (204), Expect = 7e-20
 Identities = 36/187 (19%), Positives = 78/187 (41%), Gaps = 23/187 (12%)

Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLK---MKKSHSTRNF 67
           R ++LE       +F+    +G+G  G +Y  R K +   +A++ L    ++K+      
Sbjct: 1   RQWALE-------DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQL 53

Query: 68  MHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLT 127
              +E+ S LRH +++   G+  +        +R++LI EY P GT+   +         
Sbjct: 54  RREVEIQSHLRHPNILRLYGYFHDA-------TRVYLILEYAPLGTVYREL--QKLSKFD 104

Query: 128 WTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK 187
             +  +    +A  + + H+     V   ++K  ++LL      KI+ +   + A ++ +
Sbjct: 105 EQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR 161

Query: 188 VGHVTPY 194
                  
Sbjct: 162 TTLCGTL 168

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (203), Expect = 8e-20
 Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 14/177 (7%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCH 81
            ++D    +GEG+ G++     +     +A++ + MK++     N    I +   L H +
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64

Query: 82  LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARG 141
           +V   GH  E        +  +L  EY   G L   I           QR      +  G
Sbjct: 65  VVKFYGHRREG-------NIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRF--FHQLMAG 115

Query: 142 IQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSI 198
           + +LH     G+   ++K  ++LLD+    KIS + L  +     +   +    G++
Sbjct: 116 VVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTL 169

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 2e-19
 Identities = 35/197 (17%), Positives = 70/197 (35%), Gaps = 25/197 (12%)

Query: 17  EELEEATNNFDTSAFMGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHSTR-NFMH 69
           +E E A      S  +G+GS G +Y G  K        T +AI+ +    S   R  F++
Sbjct: 13  DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLN 72

Query: 70  HIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH-------- 121
              ++ +    H+V  LG         S      +I E +  G L+S++           
Sbjct: 73  EASVMKEFNCHHVVRLLGVV-------SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNP 125

Query: 122 AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL 181
                + ++ I  A  +A G+ +L+          +L   + ++ ++   KI  + +   
Sbjct: 126 VLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRD 182

Query: 182 AENAEKVGHVTPYSGSI 198
               +           +
Sbjct: 183 IYETDYYRKGGKGLLPV 199

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.7 bits (201), Expect = 3e-19
 Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 15/159 (9%)

Query: 33  GEGSKGQMYRGRLKN----GTFIAIRCL-KMKKSHSTRNFMHHIELISKLRHCHLVSALG 87
           G G  G +Y G L +        A++ L ++        F+    ++    H +++S LG
Sbjct: 36  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLG 95

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT 147
            C        S     ++  Y+ +G LR++I      + T    I   + VA+G++FL +
Sbjct: 96  ICLR------SEGSPLVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKFLAS 148

Query: 148 GIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 186
                    +L   + +LD+    K++ + L     + E
Sbjct: 149 ---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE 184

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (199), Expect = 4e-19
 Identities = 25/147 (17%), Positives = 64/147 (43%), Gaps = 14/147 (9%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G+G+ G +Y    +  G  +AIR + +++       ++ I ++ + ++ ++V+ L     
Sbjct: 29  GQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV 88

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
                     ++++ EY+  G+L   ++          Q  +      + ++FLH+    
Sbjct: 89  G-------DELWVVMEYLAGGSLTDVVTETCM---DEGQIAAVCRECLQALEFLHSN--- 135

Query: 152 GVFSNNLKITDILLDQNLVAKISSYNL 178
            V   ++K  +ILL  +   K++ +  
Sbjct: 136 QVIHRDIKSDNILLGMDGSVKLTDFGF 162

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 5e-19
 Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 22/181 (12%)

Query: 23  TNNFDTSAF-----MGEGSKGQMYRGRLKNGT-----FIAIRCLKMKKSHSTR-NFMHHI 71
           T     S       +G G  G++Y+G LK  +      +AI+ LK   +   R +F+   
Sbjct: 1   TTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEA 60

Query: 72  ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQR 131
            ++ +  H +++   G   +          + +I EY+ NG L  ++     +  +  Q 
Sbjct: 61  GIMGQFSHHNIIRLEGVISKY-------KPMMIITEYMENGALDKFLREKDGE-FSVLQL 112

Query: 132 ISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV 191
           +    G+A G+++L           +L   +IL++ NLV K+S + L  + E+  +  + 
Sbjct: 113 VGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYT 169

Query: 192 T 192
           T
Sbjct: 170 T 170

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.8 bits (196), Expect = 8e-19
 Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 19/153 (12%)

Query: 33  GEGSKGQMYRGRLK----NGTFIAIRCLK---MKKSHSTRNFMHHIELISKLRHCHLVSA 85
           G+GS G + RG           +A++CLK   + +  +  +F+  +  +  L H +L+  
Sbjct: 17  GDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRL 76

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFL 145
            G              + ++ E  P G+L   +  H             A+ VA G+ +L
Sbjct: 77  YGVVLTPP--------MKMVTELAPLGSLLDRLRKH-QGHFLLGTLSRYAVQVAEGMGYL 127

Query: 146 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
            +         +L   ++LL    + KI  + L
Sbjct: 128 ES---KRFIHRDLAARNLLLATRDLVKIGDFGL 157

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 79.7 bits (196), Expect = 9e-19
 Identities = 28/187 (14%), Positives = 66/187 (35%), Gaps = 23/187 (12%)

Query: 25  NFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHST---------RNFMHHIELI 74
           N++    +G G    + R          A++ + +    S             +  ++++
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63

Query: 75  SKLR-HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRIS 133
            K+  H +++                   FL+F+ +  G L  +++     +L+  +   
Sbjct: 64  RKVSGHPNIIQLKDTYETNT-------FFFLVFDLMKKGELFDYLTEK--VTLSEKETRK 114

Query: 134 AAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTP 193
               +   I  LH      +   +LK  +ILLD ++  K++ +      +  EK+  V  
Sbjct: 115 IMRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCG 171

Query: 194 YSGSINP 200
               + P
Sbjct: 172 TPSYLAP 178

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.0 bits (194), Expect = 1e-18
 Identities = 27/151 (17%), Positives = 58/151 (38%), Gaps = 18/151 (11%)

Query: 33  GEGSKGQMYRGRLKN---GTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCHLVSALG 87
           G G+ G + +G  +       +A++ LK + +        +    ++ +L + ++V  +G
Sbjct: 16  GSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIG 75

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHT 147
            C              L+ E    G L  ++  +  + +     I     V+ G+++L  
Sbjct: 76  ICEA--------ESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEE 125

Query: 148 GIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
                    +L   ++LL     AKIS + L
Sbjct: 126 ---SNFVHRDLAARNVLLVTQHYAKISDFGL 153

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (192), Expect = 3e-18
 Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 10/150 (6%)

Query: 33  GEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCHLVSALGHC 89
           G GS   +Y+G        +A   L+ +K   +  + F    E++  L+H ++V      
Sbjct: 18  GRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSW 77

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGI 149
                       I L+ E + +GTL++++     + +      S    + +G+QFLHT  
Sbjct: 78  ESTVKGKKC---IVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTR- 131

Query: 150 VPGVFSNNLKITDILL-DQNLVAKISSYNL 178
            P +   +LK  +I +       KI    L
Sbjct: 132 TPPIIHRDLKCDNIFITGPTGSVKIGDLGL 161

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 78.6 bits (193), Expect = 5e-18
 Identities = 31/180 (17%), Positives = 70/180 (38%), Gaps = 14/180 (7%)

Query: 24  NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL 82
           +++D    +G G+ G ++R      G   A + +              I+ +S LRH  L
Sbjct: 26  DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTL 85

Query: 83  VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGI 142
           V    +  + + DD   + + +I+E++  G L   ++      ++  + +     V +G+
Sbjct: 86  V----NLHDAFEDD---NEMVMIYEFMSGGELFEKVADEH-NKMSEDEAVEYMRQVCKGL 137

Query: 143 QFLHTGIVPGVFSNNLKITDILL--DQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINP 200
             +H          +LK  +I+    ++   K+  + L    +  + V   T  +    P
Sbjct: 138 CHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAP 194

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (191), Expect = 5e-18
 Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 29/174 (16%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNG---TFIAIRCLKMKKSHS-TRNFMHHIELISKL-R 78
           N+      +GEG+ GQ+ + R+K        AI+ +K   S    R+F   +E++ KL  
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 69

Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAW--------------Q 124
           H ++++ LG C            ++L  EY P+G L  ++                    
Sbjct: 70  HPNIINLLGACEHR-------GYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAS 122

Query: 125 SLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           +L+  Q +  A  VARG+ +L           +L   +IL+ +N VAKI+ + L
Sbjct: 123 TLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGL 173

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 78.2 bits (192), Expect = 7e-18
 Identities = 21/143 (14%), Positives = 54/143 (37%), Gaps = 12/143 (8%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G G+ G ++R      G     + +            + I ++++L H  L+    +  +
Sbjct: 38  GSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLI----NLHD 93

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
            + D      + LI E++  G L   I+      ++  + I+       G++ +H     
Sbjct: 94  AFEDK---YEMVLILEFLSGGELFDRIAAED-YKMSEAEVINYMRQACEGLKHMHE---H 146

Query: 152 GVFSNNLKITDILLDQNLVAKIS 174
            +   ++K  +I+ +    + + 
Sbjct: 147 SIVHLDIKPENIMCETKKASSVK 169

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.2 bits (192), Expect = 7e-18
 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHST------RNFMHHIELISK 76
           N+F     +G G  G++Y  R    G   A++CL  K+           N    + L+S 
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 77  LRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAI 136
                +V         +       ++  I + +  G L   +S H   S    +  +A I
Sbjct: 64  GDCPFIV----CMSYAFHTPD---KLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEI 116

Query: 137 GVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
               G++ +H      V   +LK  +ILLD++   +IS   L
Sbjct: 117 --ILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGL 153

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (190), Expect = 7e-18
 Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 29/196 (14%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSHST-RNFMHHIELISK 76
           +       +G G+ GQ+                +A++ LK   +HS  R  M  ++++  
Sbjct: 13  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 72

Query: 77  LRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH--------------A 122
           + H   V  L               + +I E+   G L +++                  
Sbjct: 73  IGHHLNVVNLLGAC-----TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLY 127

Query: 123 WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA 182
              LT    I  +  VA+G++FL +         +L   +ILL +  V KI  + L    
Sbjct: 128 KDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDI 184

Query: 183 ENAEKVGHVTPYSGSI 198
                          +
Sbjct: 185 YKDPDYVRKGDARLPL 200

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 77.4 bits (190), Expect = 9e-18
 Identities = 30/182 (16%), Positives = 66/182 (36%), Gaps = 13/182 (7%)

Query: 17  EELEEATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTR-NFMHHIELI 74
           ++ E+  + +D    +G G+  ++      +    +AI+C+  K       +  + I ++
Sbjct: 2   KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVL 61

Query: 75  SKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISA 134
            K++H ++V       + Y        ++LI + V  G L   I        T       
Sbjct: 62  HKIKHPNIV----ALDDIYESGG---HLYLIMQLVSGGELFDRIVEK--GFYTERDASRL 112

Query: 135 AIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV--T 192
              V   +++LH   +         +    LD++    IS + L  + +    +     T
Sbjct: 113 IFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGT 172

Query: 193 PY 194
           P 
Sbjct: 173 PG 174

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (187), Expect = 2e-17
 Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 39/204 (19%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHSTRN-FMHHIELISK 76
            N +    +G G+ G++                +A++ LK K   S R   M  ++++++
Sbjct: 37  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQ 96

Query: 77  L-RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH-------------- 121
           L  H ++V+ LG C            I+LIFEY   G L +++                 
Sbjct: 97  LGSHENIVNLLGACTLS-------GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQ 149

Query: 122 -------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 174
                      LT+   +  A  VA+G++FL           +L   ++L+    V KI 
Sbjct: 150 KRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF---KSCVHRDLAARNVLVTHGKVVKIC 206

Query: 175 SYNLPLLAENAEKVGHVTPYSGSI 198
            + L     +             +
Sbjct: 207 DFGLARDIMSDSNYVVRGNARLPV 230

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (186), Expect = 3e-17
 Identities = 35/176 (19%), Positives = 68/176 (38%), Gaps = 16/176 (9%)

Query: 25  NFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLK---MKKSHSTRNFMHHIELISKLRHC 80
           +F     +GEGS   +   R L      AI+ L+   + K +         +++S+L H 
Sbjct: 9   DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 68

Query: 81  HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVAR 140
             V      +  + DD    +++    Y  NG L  +I      S   T        +  
Sbjct: 69  FFV----KLYFTFQDDE---KLYFGLSYAKNGELLKYI--RKIGSFDETCTRFYTAEIVS 119

Query: 141 GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSG 196
            +++LH     G+   +LK  +ILL++++  +I+ +    +     K      + G
Sbjct: 120 ALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVG 172

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (186), Expect = 3e-17
 Identities = 34/181 (18%), Positives = 69/181 (38%), Gaps = 18/181 (9%)

Query: 26  FDTSAFMGEGSKGQMYRGRLKN-----GTFIAIRCLKMKKS-HSTRNFMHHIELISKLRH 79
           F     +G G+ G +Y+G            +AI+ L+   S  + +  +    +++ + +
Sbjct: 11  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN 70

Query: 80  CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVA 139
            H+   LG C          S + LI + +P G L  ++  H          ++  + +A
Sbjct: 71  PHVCRLLGICLT--------STVQLITQLMPFGCLLDYVREHKDNI-GSQYLLNWCVQIA 121

Query: 140 RGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSIN 199
           +G+ +L       +   +L   ++L+      KI+ + L  L    EK  H       I 
Sbjct: 122 KGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIK 178

Query: 200 P 200
            
Sbjct: 179 W 179

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 75.2 bits (184), Expect = 4e-17
 Identities = 25/156 (16%), Positives = 60/156 (38%), Gaps = 12/156 (7%)

Query: 23  TNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHST---RNFMHHIELISKLR 78
           ++ ++    +G G   +++  R L+    +A++ L+   +        F    +  + L 
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65

Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGV 138
           H  +V+          +  +    +++ EYV   TLR  +  H    +T  + I      
Sbjct: 66  HPAIVAVYDTGEA---ETPAGPLPYIVMEYVDGVTLRDIV--HTEGPMTPKRAIEVIADA 120

Query: 139 ARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 174
            + + F H     G+   ++K  +I++      K+ 
Sbjct: 121 CQALNFSHQ---NGIIHRDVKPANIMISATNAVKVM 153

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 1e-16
 Identities = 35/190 (18%), Positives = 65/190 (34%), Gaps = 34/190 (17%)

Query: 33  GEGSKGQMYRGRLK------NGTFIAIRCLKMKKSHSTRN-FMHHIELISKL-RHCHLVS 84
           G G+ G++                +A++ LK     + R   M  ++++S L  H ++V+
Sbjct: 32  GAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVN 91

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQ----------------SLTW 128
            LG C              +I EY   G L +++                      +L  
Sbjct: 92  LLGACTI-------GGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDL 144

Query: 129 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKV 188
              +S +  VA+G+ FL +         +L   +ILL    + KI  + L    +N    
Sbjct: 145 EDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNY 201

Query: 189 GHVTPYSGSI 198
                    +
Sbjct: 202 VVKGNARLPV 211

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (179), Expect = 4e-16
 Identities = 24/160 (15%), Positives = 63/160 (39%), Gaps = 11/160 (6%)

Query: 21  EATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRN-FMHHIELISKLR 78
           +    +   +++GEG+ G +       N   +AI+ +   +  +     +  I+++ + R
Sbjct: 5   DVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFR 64

Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGV 138
           H +++           +     +   +  ++    L   +     Q L+          +
Sbjct: 65  HENIIGINDIIRAPTIEQ---MKDVYLVTHLMGADLYKLLKT---QHLSNDHICYFLYQI 118

Query: 139 ARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
            RG++++H+     V   +LK +++LL+     KI  + L
Sbjct: 119 LRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGL 155

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (179), Expect = 4e-16
 Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 10/146 (6%)

Query: 25  NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV 83
           ++  +  +G GS G +Y+ +L  +G  +AI+ +   K    R     ++++ KL HC++V
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIV 76

Query: 84  SALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS-GHAWQSLTWTQRISAAIGVARGI 142
             L + F    +      + L+ +YVP    R       A Q+L           + R +
Sbjct: 77  R-LRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSL 135

Query: 143 QFLHTGIVPGVFSNNLKITDILLDQN 168
            ++H+    G+   ++K  ++LLD +
Sbjct: 136 AYIHS---FGICHRDIKPQNLLLDPD 158

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (177), Expect = 6e-16
 Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 13/138 (9%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCF 90
           G G  G++ +    +     A++ L+             +EL  +  +  H+V  +    
Sbjct: 21  GLGINGKVLQIFNKRTQEKFALKMLQDCPK-----ARREVELHWRASQCPHIVRIVDVYE 75

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 150
             Y        + ++ E +  G L S I     Q+ T  +       +   IQ+LH+   
Sbjct: 76  NLYAGRK---CLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS--- 129

Query: 151 PGVFSNNLKITDILLDQN 168
             +   ++K  ++L    
Sbjct: 130 INIAHRDVKPENLLYTSK 147

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (171), Expect = 3e-15
 Identities = 35/190 (18%), Positives = 76/190 (40%), Gaps = 34/190 (17%)

Query: 33  GEGSKGQMYRGRLK--------NGTFIAIRCLKMKKSHS-TRNFMHHIELISKL-RHCHL 82
           GEG+ GQ+                T +A++ LK   +     + +  +E++  + +H ++
Sbjct: 22  GEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNI 81

Query: 83  VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH--------------AWQSLTW 128
           ++ LG C +          +++I EY   G LR ++                   + L+ 
Sbjct: 82  INLLGACTQD-------GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSS 134

Query: 129 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKV 188
              +S A  VARG+++L +         +L   ++L+ ++ V KI+ + L     + +  
Sbjct: 135 KDLVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYY 191

Query: 189 GHVTPYSGSI 198
              T     +
Sbjct: 192 KKTTNGRLPV 201

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (171), Expect = 4e-15
 Identities = 25/159 (15%), Positives = 74/159 (46%), Gaps = 9/159 (5%)

Query: 24  NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHC 80
           + ++  A +G+G+ G++++ R  K G  +A++ + M+          +  I+++  L+H 
Sbjct: 10  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE 69

Query: 81  HLVSALGHCFEC-YFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVA 139
           ++V+ +  C       +     I+L+F++  +       +     +L+  +R+   +   
Sbjct: 70  NVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML--- 126

Query: 140 RGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
             +  L+      +   ++K  ++L+ ++ V K++ + L
Sbjct: 127 --LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGL 163

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (171), Expect = 5e-15
 Identities = 25/142 (17%), Positives = 58/142 (40%), Gaps = 13/142 (9%)

Query: 33  GEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G G  G ++R     +      + +K+K +         I +++  RH +++    H  E
Sbjct: 14  GRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVL-VKKEISILNIARHRNIL----HLHE 68

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 151
            +        + +IFE++    +   I+  A++ L   + +S    V   +QFLH+    
Sbjct: 69  SFESM---EELVMIFEFISGLDIFERINTSAFE-LNEREIVSYVHQVCEALQFLHS---H 121

Query: 152 GVFSNNLKITDILLDQNLVAKI 173
            +   +++  +I+      + I
Sbjct: 122 NIGHFDIRPENIIYQTRRSSTI 143

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 67.2 bits (163), Expect = 3e-14
 Identities = 28/157 (17%), Positives = 63/157 (40%), Gaps = 14/157 (8%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCH 81
             +     +GEG+ G +Y+ +   G   A++ ++++K         +  I ++ +L+H +
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN 61

Query: 82  LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARG 141
           +V                 R+ L+FE++     +          L      S  + +  G
Sbjct: 62  IVKLYDVIHTKK-------RLVLVFEHLDQDLKKLLDVCE--GGLESVTAKSFLLQLLNG 112

Query: 142 IQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           I + H      V   +LK  ++L+++    KI+ + L
Sbjct: 113 IAYCHD---RRVLHRDLKPQNLLINREGELKIADFGL 146

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (163), Expect = 4e-14
 Identities = 31/150 (20%), Positives = 66/150 (44%), Gaps = 18/150 (12%)

Query: 31  FMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHST-----RNFMHHIELISKLRHCHLVS 84
           F+GEG    +Y+ R KN    +AI+ +K+           R  +  I+L+ +L H +++ 
Sbjct: 5   FLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII- 63

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQF 144
                 + +      S I L+F+++               + +  +     +   +G+++
Sbjct: 64  ---GLLDAFGHK---SNISLVFDFMETDLEVIIKDNSLVLTPSHIKAY--MLMTLQGLEY 115

Query: 145 LHTGIVPGVFSNNLKITDILLDQNLVAKIS 174
           LH      +   +LK  ++LLD+N V K++
Sbjct: 116 LHQ---HWILHRDLKPNNLLLDENGVLKLA 142

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.7 bits (162), Expect = 6e-14
 Identities = 32/155 (20%), Positives = 63/155 (40%), Gaps = 16/155 (10%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLK---MKKSHSTRNFMHHIELISKLRH 79
            +F     +G GS G+++  R + NG + A++ LK   + +     +      ++S + H
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 63

Query: 80  CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVA 139
             ++   G   +         +IF+I +Y+  G L S +           +  +A +   
Sbjct: 64  PFIIRMWGTFQDA-------QQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEV--- 113

Query: 140 RGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 174
                L       +   +LK  +ILLD+N   KI+
Sbjct: 114 --CLALEYLHSKDIIYRDLKPENILLDKNGHIKIT 146

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (155), Expect = 6e-13
 Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 17/160 (10%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHS---TRNFMHHIELISK-LR 78
            +F     +G+GS G+++    K    F AI+ LK             M    ++S    
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61

Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGV 138
           H  L     H F  +        +F + EY+  G L   I          ++    A  +
Sbjct: 62  HPFLT----HMFCTFQTKE---NLFFVMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEI 112

Query: 139 ARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
             G+QFLH+    G+   +LK+ +ILLD++   KI+ + +
Sbjct: 113 ILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFGM 149

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (154), Expect = 9e-13
 Identities = 31/159 (19%), Positives = 68/159 (42%), Gaps = 16/159 (10%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHST---RNFMHHIELISKLRH 79
           N+FD    +G+G+ G++   R K  G + A++ L+ +   +     + +    ++   RH
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 80  CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVA 139
             L           +   +  R+  + EY   G L   +S     +    +   A I   
Sbjct: 65  PFLT-------ALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEI--V 115

Query: 140 RGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
             +++LH+     V   ++K+ +++LD++   KI+ + L
Sbjct: 116 SALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGL 151

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 1e-12
 Identities = 31/157 (19%), Positives = 71/157 (45%), Gaps = 14/157 (8%)

Query: 25  NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCH 81
           NF     +GEG+ G +Y+ R K  G  +A++ +++           +  I L+ +L H +
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query: 82  LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARG 141
           +V       +    +   ++++L+FE++    L+ ++   A   +      S    + +G
Sbjct: 63  IV----KLLDVIHTE---NKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQLLQG 114

Query: 142 IQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           + F H+     V   +LK  ++L++     K++ + L
Sbjct: 115 LAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGL 148

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 62.2 bits (150), Expect = 3e-12
 Identities = 24/176 (13%), Positives = 67/176 (38%), Gaps = 21/176 (11%)

Query: 24  NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCH 81
           +++     +G G   +++    + N   + ++ LK  K    +     I+++  LR   +
Sbjct: 35  DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKK---KKIKREIKILENLRGGPN 91

Query: 82  LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARG 141
           +++           D       L+FE+V N   +        Q+LT          + + 
Sbjct: 92  IITLAD-----IVKDPVSRTPALVFEHVNNTDFKQLY-----QTLTDYDIRFYMYEILKA 141

Query: 142 IQFLHTGIVPGVFSNNLKITDILLD-QNLVAKISSYNLPLLAENAEKVGH--VTPY 194
           + + H+    G+   ++K  ++++D ++   ++  + L       ++      + Y
Sbjct: 142 LDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRY 194

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 4e-12
 Identities = 31/164 (18%), Positives = 72/164 (43%), Gaps = 13/164 (7%)

Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLK--NGTFIAIRCLKMKKSHST--RNFMHHIELISKL 77
           A   ++  A +GEG+ G++++ R     G F+A++ ++++        + +  + ++  L
Sbjct: 5   ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHL 64

Query: 78  ---RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISA 134
               H ++V     C     D    +++ L+FE+V      +++       +        
Sbjct: 65  ETFEHPNVVRLFDVCTVSRTDRE--TKLTLVFEHVDQDLT-TYLDKVPEPGVPTETIKDM 121

Query: 135 AIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
              + RG+ FLH+     V   +LK  +IL+  +   K++ + L
Sbjct: 122 MFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGL 162

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.0 bits (147), Expect = 6e-12
 Identities = 16/115 (13%), Positives = 38/115 (33%), Gaps = 11/115 (9%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G GS G +Y G  +  G  +AI+   +K  H         ++   ++    +  +  C  
Sbjct: 16  GSGSFGDIYLGTDIAAGEEVAIKLECVKTKH--PQLHIESKIYKMMQGGVGIPTIRWCGA 73

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLH 146
                       ++ E +       +      +  +    +  A  +   I+++H
Sbjct: 74  ------EGDYNVMVMELLGPSLEDLFNFCS--RKFSLKTVLLLADQMISRIEYIH 120

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 1e-11
 Identities = 34/166 (20%), Positives = 71/166 (42%), Gaps = 22/166 (13%)

Query: 14  FSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRN------ 66
           F  E ++   + +DT   +G G    + + R K  G   A + +K +++ S+R       
Sbjct: 3   FRQENVD---DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSRED 59

Query: 67  FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSL 126
               + ++ +++H +++       E Y + +    + LI E V  G L  ++     +SL
Sbjct: 60  IEREVSILKEIQHPNVI----TLHEVYENKT---DVILILELVAGGELFDFL--AEKESL 110

Query: 127 TWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAK 172
           T  +       +  G+ +LH+     +   +LK  +I+L    V K
Sbjct: 111 TEEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPK 153

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.0 bits (142), Expect = 4e-11
 Identities = 25/159 (15%), Positives = 63/159 (39%), Gaps = 16/159 (10%)

Query: 24  NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTR---NFMHHIELISKLRH 79
           + FD    +G GS G++   +  ++G   A++ L  +K    +   + ++   ++  +  
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 80  CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVA 139
             LV       +          ++++ EYV  G + S +        +       A  + 
Sbjct: 101 PFLVKLEFSFKDNSN-------LYMVMEYVAGGEMFSHL--RRIGRFSEPHARFYAAQIV 151

Query: 140 RGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
              ++LH+     +   +LK  ++L+DQ    +++ +  
Sbjct: 152 LTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGF 187

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 4e-11
 Identities = 24/158 (15%), Positives = 68/158 (43%), Gaps = 15/158 (9%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHC 80
             ++    +GEG+ G +++ + +     +A++ +++         + +  I L+ +L+H 
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61

Query: 81  HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVAR 140
           ++V                 ++ L+FE+      + + S +        +       + +
Sbjct: 62  NIVRLHDVLHSDK-------KLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSF--LFQLLK 112

Query: 141 GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           G+ F H+     V   +LK  ++L+++N   K++++ L
Sbjct: 113 GLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGL 147

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 1e-10
 Identities = 32/163 (19%), Positives = 70/163 (42%), Gaps = 19/163 (11%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRL----KNGTFIAIRCLK----MKKSHSTRNFMHHIELIS 75
            NF+    +G G+ G+++  R       G   A++ LK    ++K+ +T +     +++ 
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83

Query: 76  KLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAA 135
            +R    +  L + F+      + +++ LI +Y+  G L + +S     +    Q     
Sbjct: 84  HIRQSPFLVTLHYAFQ------TETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGE 137

Query: 136 IGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 178
           I     +  L      G+   ++K+ +ILLD N    ++ + L
Sbjct: 138 I-----VLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGL 175

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 2e-09
 Identities = 20/142 (14%), Positives = 48/142 (33%), Gaps = 9/142 (6%)

Query: 9   PAYRTFSLEELE-EATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHST-- 64
           P +    L +   E    +   + +G G+ G +      K G  +A++ L          
Sbjct: 2   PTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA 61

Query: 65  RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQ 124
           +     + L+  ++H +++  L         +        +  ++    L +       Q
Sbjct: 62  KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFND--VYLVTHLMGADLNNI---VKCQ 116

Query: 125 SLTWTQRISAAIGVARGIQFLH 146
            LT          + RG++++H
Sbjct: 117 KLTDDHVQFLIYQILRGLKYIH 138

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 15/152 (9%), Positives = 41/152 (26%), Gaps = 25/152 (16%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAI----------RCLKMKKSHSTRNFMHHIELISKLRHCH 81
           MGEG +  ++    +      +          + +K K+ +   +F       ++     
Sbjct: 8   MGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRA 67

Query: 82  LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARG 141
           L    G      +         ++ E +    L                       +   
Sbjct: 68  LQKLQGLAVPKVYA---WEGNAVLMELIDAKELYRVR---------VENPDEVLDMILEE 115

Query: 142 IQFLHTGIVPGVFSNNLKITDILLDQNLVAKI 173
           +   +     G+   +L   ++L+ +  +  I
Sbjct: 116 VAKFYH---RGIVHGDLSQYNVLVSEEGIWII 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.95
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.92
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.96
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	98.45
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	98.08
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	97.97
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	97.91
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	97.5

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-42  Score=259.03  Aligned_cols=169  Identities=21%  Similarity=0.302  Sum_probs=146.3

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|++.+.||+|+||.||+|.++ +|+.||+|+++... ....+.+.+|+.++++++||||+++++.+.+       .+
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~-------~~   76 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRRE-------GN   76 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEE-------TT
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeecc-------Cc
Confidence            468999999999999999999964 68999999997654 2334678899999999999999999999877       67


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++||||+++|+|.+++..+.  .+++..+..++.|++.||.|||+   .+|+||||||+||++++++.+||+|||+|+
T Consensus        77 ~~~ivmEy~~gg~L~~~l~~~~--~l~e~~~~~i~~qi~~al~ylH~---~~IiHrDiKp~NILl~~~~~~KL~DFG~a~  151 (271)
T d1nvra_          77 IQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLAT  151 (271)
T ss_dssp             EEEEEEECCTTEEGGGGSBTTT--BCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             eeEEEEeccCCCcHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHH---cCCccCcccHHHEEECCCCCEEEccchhhe
Confidence            8999999999999999997654  79999999999999999999999   799999999999999999999999999998


Q ss_pred             hccccc---ccccccccccccCCCCC
Q 028725          181 LAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      ......   ......||+.|||||..
T Consensus       152 ~~~~~~~~~~~~~~~GT~~Y~APE~~  177 (271)
T d1nvra_         152 VFRYNNRERLLNKMCGTLPYVAPELL  177 (271)
T ss_dssp             ECEETTEECCBCCCCSCGGGSCTHHH
T ss_pred             eeccCCccccccceeeCcCccCHhHh
Confidence            765433   23446899999999964

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-41  Score=257.47  Aligned_cols=167  Identities=16%  Similarity=0.309  Sum_probs=150.4

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      .+|++.+.||+|+||.||+|.. .+|+.||+|+++.......+.+.+|+.+++.++||||+++++++.+       .+..
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-------~~~~   92 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-------GDEL   92 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEE-------TTEE
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEE-------CCEE
Confidence            4799999999999999999995 5699999999987766677889999999999999999999999877       6789


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      |+||||+++|+|.+++..+   .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+|+..
T Consensus        93 ~ivmEy~~gg~L~~~~~~~---~l~~~~~~~i~~qi~~aL~yLH~---~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~  166 (293)
T d1yhwa1          93 WVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQI  166 (293)
T ss_dssp             EEEEECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEEecCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHH---CCCcccCCcHHHeEECCCCcEeeccchhheee
Confidence            9999999999999988753   58999999999999999999999   79999999999999999999999999999876


Q ss_pred             cccc-ccccccccccccCCCCC
Q 028725          183 ENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       183 ~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      .... ......||+.|+|||..
T Consensus       167 ~~~~~~~~~~~gt~~Y~aPE~~  188 (293)
T d1yhwa1         167 TPEQSKRSTMVGTPYWMAPEVV  188 (293)
T ss_dssp             CSTTCCBCCCCSCGGGCCHHHH
T ss_pred             ccccccccccccCCCccChhhh
Confidence            5433 44556899999999964

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-41  Score=257.61  Aligned_cols=168  Identities=15%  Similarity=0.313  Sum_probs=149.8

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      +.|++.+.||+|+||.||+|... ++..||+|+++.......+.+.+|+.++++++||||+++++++.+       .+..
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-------~~~~   84 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYY-------ENNL   84 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEE-------TTEE
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEee-------CCeE
Confidence            46899999999999999999964 689999999987777777889999999999999999999999877       6789


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      ++||||+++|+|.+++.... ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+|+..
T Consensus        85 ~lvmEy~~~g~L~~~~~~~~-~~l~e~~~~~i~~qi~~gL~ylH~---~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~  160 (288)
T d2jfla1          85 WILIEFCAGGAVDAVMLELE-RPLTESQIQVVCKQTLDALNYLHD---NKIIHRDLKAGNILFTLDGDIKLADFGVSAKN  160 (288)
T ss_dssp             EEEEECCTTEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEEecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCEEEeecChhheeECCCCCEEEEechhhhcc
Confidence            99999999999999876433 368999999999999999999999   79999999999999999999999999999765


Q ss_pred             ccc-cccccccccccccCCCC
Q 028725          183 ENA-EKVGHVTPYSGSINPTN  202 (205)
Q Consensus       183 ~~~-~~~~~~~~~~~~~aPE~  202 (205)
                      ... .......||+.|+|||.
T Consensus       161 ~~~~~~~~~~~Gt~~y~APE~  181 (288)
T d2jfla1         161 TRTIQRRDSFIGTPYWMAPEV  181 (288)
T ss_dssp             HHHHHHHTCCCSCCTTCCHHH
T ss_pred             CCCcccccccccccccCCHHH
Confidence            543 23345689999999995

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-41  Score=252.82  Aligned_cols=167  Identities=20%  Similarity=0.353  Sum_probs=148.6

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|++++.||+|+||.||+|..+ +++.||+|++.+.   .......+.+|+.+++.++||||+++++++.+       .
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-------~   78 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHD-------A   78 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-------S
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEE-------C
Confidence            57999999999999999999964 6889999999653   34556778899999999999999999999876       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +.+++||||+++|+|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||++++++.+||+|||+|
T Consensus        79 ~~~~ivmEy~~~g~L~~~l~~~~--~l~e~~~~~i~~qi~~al~~lH~---~~ivHrDiKp~Nill~~~~~~kl~DFG~a  153 (263)
T d2j4za1          79 TRVYLILEYAPLGTVYRELQKLS--KFDEQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWS  153 (263)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCCSC
T ss_pred             CEEEEEEeecCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeeeeeeccccceecCCCCEeeccccee
Confidence            78999999999999999998654  78999999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ....... .....||+.|||||..
T Consensus       154 ~~~~~~~-~~~~~Gt~~Y~APE~~  176 (263)
T d2j4za1         154 VHAPSSR-RTTLCGTLDYLPPEMI  176 (263)
T ss_dssp             SCCCCCC-CEETTEEGGGCCHHHH
T ss_pred             eecCCCc-ccccCCCCcccCHHHH
Confidence            8766543 3446899999999964

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-41  Score=258.87  Aligned_cols=174  Identities=18%  Similarity=0.341  Sum_probs=151.6

Q ss_pred             HHHHHhcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        18 ~~~~~~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      +|+...++|++.+.||+|+||+||+|.+. +++.||+|+++.. ....+.+.+|+.++++++||||+++++++.+     
T Consensus        11 ~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~-~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-----   84 (287)
T d1opja_          11 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-----   84 (287)
T ss_dssp             TTBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTT-CSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-----
T ss_pred             ccEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCc-cchHHHHHHHHHHHHhCCCCCEecCCccEee-----
Confidence            34445678999999999999999999965 5889999999744 4556789999999999999999999999876     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                        .+..+++|||+++|+|.+++.......+++..+..++.|++.||.|||+   .+|+||||||+||++++++.+||+||
T Consensus        85 --~~~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~---~~iiHrDlKp~NILl~~~~~~Kl~DF  159 (287)
T d1opja_          85 --EPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADF  159 (287)
T ss_dssp             --SSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCC
T ss_pred             --CCeeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHH---CCcccCccccCeEEECCCCcEEEccc
Confidence              5678999999999999999986655689999999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhcccccc--cccccccccccCCCC
Q 028725          177 NLPLLAENAEK--VGHVTPYSGSINPTN  202 (205)
Q Consensus       177 g~a~~~~~~~~--~~~~~~~~~~~aPE~  202 (205)
                      |+|+.......  .....+|..|+|||.
T Consensus       160 G~a~~~~~~~~~~~~~~~g~~~y~aPE~  187 (287)
T d1opja_         160 GLSRLMTGDTYTAHAGAKFPIKWTAPES  187 (287)
T ss_dssp             CCTTTCCSSSSEEETTEEECGGGCCHHH
T ss_pred             cceeecCCCCceeeccccccccccChHH
Confidence            99987765432  233468889999995

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-41  Score=256.09  Aligned_cols=175  Identities=24%  Similarity=0.380  Sum_probs=151.0

Q ss_pred             HHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        17 ~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      ++|+...++|++.+.||+|+||.||+|.++++..||+|+++.. ....+.+.+|+.++++++||||+++++++.+     
T Consensus         6 ~~wei~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-----   79 (272)
T d1qpca_           6 DEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-----   79 (272)
T ss_dssp             CTTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT-SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-----
T ss_pred             CCeecCHHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccC-cCCHHHHHHHHHHHHhCCCCCEeEEEeeecc-----
Confidence            3444556889999999999999999999988889999999744 3456789999999999999999999997743     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                         +..++||||+++|+|.+++.......+++..+..++.|++.||.|||+   .+|+||||||+||+|++++.+||+||
T Consensus        80 ---~~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~---~~ivHrDiKp~NIll~~~~~~Kl~DF  153 (272)
T d1qpca_          80 ---EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADF  153 (272)
T ss_dssp             ---SSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCC
T ss_pred             ---CCeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCccchhheeeecccceeeccc
Confidence               457899999999999998876554568999999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhccccc--ccccccccccccCCCCC
Q 028725          177 NLPLLAENAE--KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~--~~~~~~~~~~~~aPE~~  203 (205)
                      |+|+......  ......+|..|+|||..
T Consensus       154 Gla~~~~~~~~~~~~~~~gt~~y~APE~~  182 (272)
T d1qpca_         154 GLARLIEDNEYTAREGAKFPIKWTAPEAI  182 (272)
T ss_dssp             TTCEECSSSCEECCTTCCCCTTTSCHHHH
T ss_pred             cceEEccCCccccccccCCcccccChHHH
Confidence            9998776543  22345788999999953

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-41  Score=260.33  Aligned_cols=169  Identities=12%  Similarity=0.261  Sum_probs=146.8

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|++.+.||+|+||.||+|.. .+|+.||+|+++... ......+.+|+.+++.++||||+++++++.+       .+
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~-------~~   77 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-------DG   77 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEEC-------SS
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-------CC
Confidence            57899999999999999999996 468999999997653 3335678899999999999999999999976       67


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      .+++||||+++|+|.+++....  .+++..+..++.|++.||.|||+.  .+|+||||||+||++++++.+||+|||+|+
T Consensus        78 ~~~iVmEy~~gg~L~~~l~~~~--~l~~~~~~~~~~qil~aL~yLH~~--~~IiHRDiKP~NILl~~~~~vkl~DFGla~  153 (322)
T d1s9ja_          78 EISICMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSG  153 (322)
T ss_dssp             EEEEEEECCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCCCH
T ss_pred             EEEEEEEcCCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHh--CCEEccccCHHHeeECCCCCEEEeeCCCcc
Confidence            8999999999999999997654  689999999999999999999961  389999999999999999999999999998


Q ss_pred             hcccccccccccccccccCCCCC
Q 028725          181 LAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ...+.. .....||++|+|||..
T Consensus       154 ~~~~~~-~~~~~GT~~Y~APEvl  175 (322)
T d1s9ja_         154 QLIDSM-ANSFVGTRSYMSPERL  175 (322)
T ss_dssp             HHHHHT-C---CCSSCCCCHHHH
T ss_pred             ccCCCc-cccccCCccccCchHH
Confidence            766533 3446999999999953

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-40  Score=250.45  Aligned_cols=169  Identities=21%  Similarity=0.348  Sum_probs=139.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      .++|++.+.||+|+||.||+|.+.++..||+|+++.. ....+.+.+|+.++++++||||+++++++.+       .+..
T Consensus         4 p~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~-~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-------~~~~   75 (263)
T d1sm2a_           4 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-------QAPI   75 (263)
T ss_dssp             CSCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSS-SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-------SSSC
T ss_pred             hHHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCC-cCcHHHHHHHHHHHHhcCCCCcccccceecc-------CCce
Confidence            4689999999999999999999888889999999753 4456789999999999999999999999976       5678


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      ++||||+++|+|.+++.... ..+++..++.++.|++.||.|||+   .+|+||||||+||++++++.+||+|||+++..
T Consensus        76 ~lv~E~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qia~gl~~lH~---~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~  151 (263)
T d1sm2a_          76 CLVFEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRFV  151 (263)
T ss_dssp             EEEEECCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCTTCSGGGEEECGGGCEEECSCC-----
T ss_pred             EEEEEecCCCcHHHHhhccc-cCCCHHHHHHHHHHHHHHHHhhhc---cceeecccchhheeecCCCCeEecccchheec
Confidence            99999999999999987554 468899999999999999999999   79999999999999999999999999999877


Q ss_pred             ccccc--cccccccccccCCCCC
Q 028725          183 ENAEK--VGHVTPYSGSINPTNS  203 (205)
Q Consensus       183 ~~~~~--~~~~~~~~~~~aPE~~  203 (205)
                      .....  .....||..|+|||..
T Consensus       152 ~~~~~~~~~~~~gt~~y~aPE~l  174 (263)
T d1sm2a_         152 LDDQYTSSTGTKFPVKWASPEVF  174 (263)
T ss_dssp             -------------CTTSCCHHHH
T ss_pred             cCCCceeecceecCcccCChHHh
Confidence            65432  2235789999999964

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=2.7e-40  Score=258.49  Aligned_cols=170  Identities=17%  Similarity=0.257  Sum_probs=152.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      .++|++.+.||+|+||.||+|.. .+|+.||+|++........+.+.+|+.++++++||||+++++++.+       .+.
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-------~~~   97 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFED-------DNE   97 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEE-------TTE
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEE-------CCE
Confidence            56899999999999999999996 4699999999976665566778899999999999999999999877       678


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC--CCceeEcCCCch
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ--NLVAKISSYNLP  179 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~--~~~~~l~Dfg~a  179 (205)
                      +++||||+++|+|.+++.... ..+++..+..++.|++.||.|||+   .+++||||||+||+++.  ++.+||+|||+|
T Consensus        98 ~~ivmE~~~gg~L~~~l~~~~-~~l~e~~~~~i~~qi~~aL~ylH~---~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a  173 (350)
T d1koaa2          98 MVMIYEFMSGGELFEKVADEH-NKMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFGLT  173 (350)
T ss_dssp             EEEEECCCCSCBHHHHHTCTT-SCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTSCCEEECCCTTC
T ss_pred             EEEEEEcCCCCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHh---cCCeeeeechhHeeeccCCCCeEEEeecchh
Confidence            999999999999999986543 469999999999999999999999   79999999999999964  578999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +............||+.|||||..
T Consensus       174 ~~~~~~~~~~~~~gT~~Y~aPEv~  197 (350)
T d1koaa2         174 AHLDPKQSVKVTTGTAEFAAPEVA  197 (350)
T ss_dssp             EECCTTSCEEEECSCTTTCCHHHH
T ss_pred             eecccccccceecCcccccCHHHH
Confidence            988777666667999999999963

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-40  Score=252.71  Aligned_cols=168  Identities=18%  Similarity=0.305  Sum_probs=146.0

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|++++.||+|+||.||+|.. .+++.||+|++++.   .....+.+.+|+.++++++||||+++++.+.+       .
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-------~   80 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQD-------D   80 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEEC-------S
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEE-------C
Confidence            5799999999999999999996 46999999999654   34556788999999999999999999998876       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +..|+||||+++|+|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||++++++.++|+|||+|
T Consensus        81 ~~~~ivmEy~~gg~L~~~~~~~~--~l~e~~~~~~~~qi~~al~ylH~---~~iiHrDiKp~NIll~~~~~vkl~DFG~a  155 (288)
T d1uu3a_          81 EKLYFGLSYAKNGELLKYIRKIG--SFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTA  155 (288)
T ss_dssp             SEEEEEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTC
T ss_pred             CEEEEEEEccCCCCHHHhhhccC--CCCHHHHHHHHHHHHHHHHhhcc---ccEEcCcCCccccccCCCceEEecccccc
Confidence            78999999999999999987654  79999999999999999999999   79999999999999999999999999999


Q ss_pred             hhccccc---ccccccccccccCCCCC
Q 028725          180 LLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      +......   ......||+.|+|||..
T Consensus       156 ~~~~~~~~~~~~~~~~GT~~Y~APE~~  182 (288)
T d1uu3a_         156 KVLSPESKQARANSFVGTAQYVSPELL  182 (288)
T ss_dssp             EECC----------CCCCGGGCCHHHH
T ss_pred             eecccCCcccccccccCCccccCceee
Confidence            8775432   23345899999999964

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-41  Score=254.10  Aligned_cols=171  Identities=18%  Similarity=0.345  Sum_probs=142.1

Q ss_pred             HHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           19 LEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        19 ~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      |+...++|++.+.||+|+||+||+|.++  ..||+|+++...  ....+.+.+|+.++++++||||+++++++.+     
T Consensus         3 wei~~~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-----   75 (276)
T d1uwha_           3 WEIPDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-----   75 (276)
T ss_dssp             CBCCTTCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----
T ss_pred             cccccccEEEEEEEeeCCCcEEEEEEEC--CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-----
Confidence            3345688999999999999999999864  369999997553  4446788999999999999999999987643     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                         +.+++||||+++|+|.+++.... ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+||
T Consensus        76 ---~~~~lv~Ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~gl~yLH~---~~ivHrDlKp~NiLl~~~~~~Kl~DF  148 (276)
T d1uwha_          76 ---PQLAIVTQWCEGSSLYHHLHIIE-TKFEMIKLIDIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDF  148 (276)
T ss_dssp             ---SSCEEEEECCCEEEHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTSSEEECCC
T ss_pred             ---cEEEEEEecCCCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHhc---CCEeccccCHHHEEEcCCCCEEEccc
Confidence               45899999999999999997543 468999999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhccccc---ccccccccccccCCCCC
Q 028725          177 NLPLLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      |+|+......   ......||+.|||||..
T Consensus       149 Gla~~~~~~~~~~~~~~~~gt~~y~APE~l  178 (276)
T d1uwha_         149 GLATVKSRWSGSHQFEQLSGSILWMAPEVI  178 (276)
T ss_dssp             CCSCC------------CCCCGGGCCHHHH
T ss_pred             cceeeccccCCcccccccccCcccCCHHHH
Confidence            9998765432   23345899999999964

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=3.3e-40  Score=258.18  Aligned_cols=170  Identities=16%  Similarity=0.247  Sum_probs=151.9

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      .++|++.+.||+|+||.||+|.. .+|+.||+|+++.........+.+|+.++++++||||+++++++.+       ...
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-------~~~  100 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFED-------KYE  100 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEEC-------SSE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-------CCE
Confidence            46799999999999999999996 4699999999986655556678899999999999999999998876       678


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC--CCCceeEcCCCch
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD--QNLVAKISSYNLP  179 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~--~~~~~~l~Dfg~a  179 (205)
                      +|+||||+++|+|.+.+.... ..+++..++.++.|++.||.|||+   .+|+||||||+||+++  .++.++|+|||+|
T Consensus       101 ~~ivmE~~~gg~L~~~~~~~~-~~l~e~~~~~i~~qi~~aL~ylH~---~~iiHRDiKp~NILl~~~~~~~vkL~DFGla  176 (352)
T d1koba_         101 MVLILEFLSGGELFDRIAAED-YKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGLA  176 (352)
T ss_dssp             EEEEEECCCCCBHHHHTTCTT-CCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTCCCEEECCCTTC
T ss_pred             EEEEEEcCCCChHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccccccccccccCCCeEEEeecccc
Confidence            999999999999998876543 469999999999999999999999   7999999999999998  5689999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      .............+|+.|+|||..
T Consensus       177 ~~~~~~~~~~~~~gt~~y~aPE~~  200 (352)
T d1koba_         177 TKLNPDEIVKVTTATAEFAAPEIV  200 (352)
T ss_dssp             EECCTTSCEEEECSSGGGCCHHHH
T ss_pred             eecCCCCceeeccCcccccCHHHH
Confidence            988877766677999999999964

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-40  Score=255.19  Aligned_cols=170  Identities=18%  Similarity=0.286  Sum_probs=151.5

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .++|++++.||+|+||.||+|.. .+|+.||+|++++.   .......+.+|+.+++.++||||+++.+++.+       
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~-------   76 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQT-------   76 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEEC-------
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeecc-------
Confidence            47899999999999999999995 57999999999754   34566778899999999999999999999876       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ...+++||||+++|+|.+++....  .+++..++.++.|++.||.|||+   ++|+||||||+||+++++|.+||+|||+
T Consensus        77 ~~~~~iv~ey~~gg~L~~~~~~~~--~~~e~~~~~~~~qil~al~ylH~---~~iiHRDlKP~NILl~~~g~vkl~DFG~  151 (337)
T d1o6la_          77 HDRLCFVMEYANGGELFFHLSRER--VFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGL  151 (337)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             ccccccceeccCCCchhhhhhccc--CCcHHHHHHHHHHHhhhhhhhhh---cCccccccCHHHeEecCCCCEEEeeccc
Confidence            678999999999999999988654  78999999999999999999999   7999999999999999999999999999


Q ss_pred             hhhccc-ccccccccccccccCCCCCC
Q 028725          179 PLLAEN-AEKVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       179 a~~~~~-~~~~~~~~~~~~~~aPE~~~  204 (205)
                      |+.... .......+||+.|+|||...
T Consensus       152 a~~~~~~~~~~~~~~GT~~Y~aPE~~~  178 (337)
T d1o6la_         152 CKEGISDGATMKTFCGTPEYLAPEVLE  178 (337)
T ss_dssp             CBCSCCTTCCBCCCEECGGGCCGGGGS
T ss_pred             ccccccCCcccccceeCHHHhhhhhcc
Confidence            986654 34445579999999999753

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-41  Score=252.94  Aligned_cols=176  Identities=16%  Similarity=0.271  Sum_probs=135.3

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|++.+.||+|+||.||+|.. .+|+.||+|.++....  ...+.+.+|++++++++||||+++++++.+     ...
T Consensus         3 ~edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-----~~~   77 (269)
T d2java1           3 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIID-----RTN   77 (269)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC--------
T ss_pred             chhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEe-----CCC
Confidence            36799999999999999999996 4689999999976532  335668899999999999999999998865     224


Q ss_pred             CeEEEEEeecCCCcHHHhhccC--CCCCCCHHHHHHHHHHHHHHHHHhhcCC--CCceeecCCccccEEeCCCCceeEcC
Q 028725          100 SRIFLIFEYVPNGTLRSWISGH--AWQSLTWTQRISAAIGVARGIQFLHTGI--VPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lh~~~--~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                      ..+|+||||+++|+|.+++...  ....+++..++.++.|++.||.|||+..  ..+|+||||||+||++++++.+||+|
T Consensus        78 ~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~D  157 (269)
T d2java1          78 TTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGD  157 (269)
T ss_dssp             -CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECC
T ss_pred             CEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEee
Confidence            5689999999999999998632  2247999999999999999999999820  02499999999999999999999999


Q ss_pred             CCchhhccccc-ccccccccccccCCCCC
Q 028725          176 YNLPLLAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ||+|+...... ......||+.|||||..
T Consensus       158 FG~a~~~~~~~~~~~~~~gt~~Y~APE~l  186 (269)
T d2java1         158 FGLARILNHDTSFAKAFVGTPYYMSPEQM  186 (269)
T ss_dssp             HHHHHHC-----------CCCSCCCHHHH
T ss_pred             ccceeecccCCCccccCCCCcccCCHHHH
Confidence            99999876543 33456899999999964

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.1e-40  Score=253.40  Aligned_cols=169  Identities=18%  Similarity=0.311  Sum_probs=130.7

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .+.|++.+.||+|+||.||+|... +++.||+|++.... ......+.+|+.+++.++||||+++++++.+       .+
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~-------~~   80 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYES-------GG   80 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEEC-------SS
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-------CC
Confidence            466999999999999999999964 68999999997653 2334567789999999999999999998876       67


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeC---CCCceeEcCCC
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD---QNLVAKISSYN  177 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~---~~~~~~l~Dfg  177 (205)
                      .+|+||||+++|+|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||++.   +++.+||+|||
T Consensus        81 ~~~lvmE~~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~al~ylH~---~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG  155 (307)
T d1a06a_          81 HLYLIMQLVSGGELFDRIVEKG--FYTERDASRLIFQVLDAVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFG  155 (307)
T ss_dssp             EEEEEECCCCSCBHHHHHHTCS--CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSTTCCEEECCC-
T ss_pred             EEEEEEeccCCCcHHHhhhccc--CCCHHHHHHHHHHHHHHHHhhhh---ceeeeEEecccceeecccCCCceEEEeccc
Confidence            8999999999999999998654  79999999999999999999999   7999999999999995   57899999999


Q ss_pred             chhhcccccccccccccccccCCCCC
Q 028725          178 LPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +|+............||+.|||||..
T Consensus       156 ~a~~~~~~~~~~~~~GT~~y~APE~~  181 (307)
T d1a06a_         156 LSKMEDPGSVLSTACGTPGYVAPEVL  181 (307)
T ss_dssp             -----------------CTTSCHHHH
T ss_pred             eeEEccCCCeeeeeeeCccccCcHHH
Confidence            99988776666667899999999964

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.6e-40  Score=253.27  Aligned_cols=164  Identities=18%  Similarity=0.309  Sum_probs=144.3

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCc---CHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSH---STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ..|+.++.||+|+||.||+|.. .+++.||+|+++.....   ..+.+.+|+.++++++||||+++++++.+       .
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-------~   87 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR-------E   87 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-------T
T ss_pred             HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEE-------C
Confidence            4599999999999999999995 46889999999765432   24568899999999999999999999877       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      +..++||||+.+|++..++..+.  .+++..++.++.|++.||.|||+   .+|+||||||+||++++++.+||+|||+|
T Consensus        88 ~~~~iv~E~~~~g~l~~~~~~~~--~l~e~~~~~i~~qi~~aL~yLH~---~~iiHrDiKp~NILl~~~~~~Kl~DFG~a  162 (309)
T d1u5ra_          88 HTAWLVMEYCLGSASDLLEVHKK--PLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSA  162 (309)
T ss_dssp             TEEEEEEECCSEEHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTEEEECCCTTC
T ss_pred             CEEEEEEEecCCCchHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHh---CCEeccCCCcceEEECCCCCEEEeecccc
Confidence            78999999999999987766553  78999999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      +.....   ....||+.|||||.
T Consensus       163 ~~~~~~---~~~~GT~~Y~APE~  182 (309)
T d1u5ra_         163 SIMAPA---NSFVGTPYWMAPEV  182 (309)
T ss_dssp             BSSSSB---CCCCSCGGGCCHHH
T ss_pred             cccCCC---CccccCccccCHHH
Confidence            876543   34689999999995

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-39  Score=251.06  Aligned_cols=167  Identities=22%  Similarity=0.334  Sum_probs=148.9

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .++|++++.||+|+||+||+|.. .+|+.||+|++++.   .....+.+.+|+.+++.++||||+++++++.+       
T Consensus         3 l~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-------   75 (316)
T d1fota_           3 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQD-------   75 (316)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEEC-------
T ss_pred             hhHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEee-------
Confidence            36799999999999999999996 46999999999654   34567788999999999999999999999876       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      .+.+++||||++|++|.+++....  .+++.....++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+
T Consensus        76 ~~~~~ivmE~~~gg~l~~~~~~~~--~~~~~~~~~~~~qi~~al~~lH~---~~iiHrDiKp~NILl~~~g~vkL~DFG~  150 (316)
T d1fota_          76 AQQIFMIMDYIEGGELFSLLRKSQ--RFPNPVAKFYAAEVCLALEYLHS---KDIIYRDLKPENILLDKNGHIKITDFGF  150 (316)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHTS--SCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTSCEEECCCSS
T ss_pred             CCeeeeEeeecCCccccccccccc--cccccHHHHHHHHHHHhhhhhcc---CcEEccccCchheeEcCCCCEEEecCcc
Confidence            678999999999999999988765  67888889999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccccccccccccccccCCCCC
Q 028725          179 PLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      |+...+..  ....||+.|||||..
T Consensus       151 a~~~~~~~--~~~~Gt~~Y~APE~l  173 (316)
T d1fota_         151 AKYVPDVT--YTLCGTPDYIAPEVV  173 (316)
T ss_dssp             CEECSSCB--CCCCSCTTTCCHHHH
T ss_pred             ceEecccc--ccccCcccccCHHHH
Confidence            98776533  346899999999974

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-39  Score=242.43  Aligned_cols=168  Identities=21%  Similarity=0.314  Sum_probs=148.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      .++|++.+.||+|+||+||+|.++++..||+|+++.. ....+.+.+|+.++++++||||+++++++.+       .+.+
T Consensus         3 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~-~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~-------~~~~   74 (258)
T d1k2pa_           3 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK-------QRPI   74 (258)
T ss_dssp             CCCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESS-SSCHHHHHHHHHHHHTCCCTTBCCEEEEECC-------SSSE
T ss_pred             hHHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcC-cCCHHHHHHHHHHHHhcCCCceeeEEEEEee-------CCce
Confidence            4789999999999999999999988889999999754 4456789999999999999999999999876       5679


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhc
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  182 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~  182 (205)
                      ++||||+++|+|.+++.... ..+++..+..++.|++.||.|||+   .+|+||||||+||++++++.+||+|||+++..
T Consensus        75 ~iv~Ey~~~g~l~~~~~~~~-~~~~~~~~~~i~~qi~~gl~~LH~---~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~  150 (258)
T d1k2pa_          75 FIITEYMANGCLLNYLREMR-HRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYV  150 (258)
T ss_dssp             EEEEECCTTEEHHHHHHSGG-GCCCHHHHHHHHHHHHHHHHHHHH---TTBCCSCCSGGGEEECTTCCEEECCCSSCCBC
T ss_pred             EEEEEccCCCcHHHhhhccc-cCCcHHHHHHHHHHHHHHHHHHhh---cCcccccccceeEEEcCCCcEEECcchhheec
Confidence            99999999999999876544 468899999999999999999999   79999999999999999999999999999876


Q ss_pred             ccccc--cccccccccccCCCC
Q 028725          183 ENAEK--VGHVTPYSGSINPTN  202 (205)
Q Consensus       183 ~~~~~--~~~~~~~~~~~aPE~  202 (205)
                      .....  .....+|..|+|||.
T Consensus       151 ~~~~~~~~~~~~~t~~y~aPE~  172 (258)
T d1k2pa_         151 LDDEYTSSVGSKFPVRWSPPEV  172 (258)
T ss_dssp             SSSSCCCCCCSCCCGGGCCHHH
T ss_pred             cCCCceeecccCCCCCcCCcHH
Confidence            65432  233578999999995

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-39  Score=244.43  Aligned_cols=169  Identities=21%  Similarity=0.273  Sum_probs=142.9

Q ss_pred             CCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      |+..+.||+|+||+||+|... ++..||+|.+....  ....+.+.+|++++++++||||+++++++.+..   .....+
T Consensus        11 ~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~---~~~~~~   87 (270)
T d1t4ha_          11 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTV---KGKKCI   87 (270)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEES---SSCEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeecc---ccCCEE
Confidence            477788999999999999964 68899999987553  234567889999999999999999999876421   224568


Q ss_pred             EEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCc--eeecCCccccEEeC-CCCceeEcCCCch
Q 028725          103 FLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG--VFSNNLKITDILLD-QNLVAKISSYNLP  179 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~--i~h~dlkp~nilv~-~~~~~~l~Dfg~a  179 (205)
                      ++||||+++|+|.+++....  .+++..+..++.|++.||.|||+   .+  |+||||||+||+++ +++.+||+|||+|
T Consensus        88 ~ivmE~~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~gl~yLH~---~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla  162 (270)
T d1t4ha_          88 VLVTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHT---RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLA  162 (270)
T ss_dssp             EEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHT---SSSCCCCSCCCGGGEEESSTTSCEEECCTTGG
T ss_pred             EEEEeCCCCCcHHHHHhccc--cccHHHHHHHHHHHHHHHHHHHH---CCCCEEeCCcChhhceeeCCCCCEEEeecCcc
Confidence            99999999999999997654  78999999999999999999998   56  99999999999997 5789999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +..... ......||+.|||||..
T Consensus       163 ~~~~~~-~~~~~~GT~~Y~aPE~~  185 (270)
T d1t4ha_         163 TLKRAS-FAKAVIGTPEFMAPEMY  185 (270)
T ss_dssp             GGCCTT-SBEESCSSCCCCCGGGG
T ss_pred             eeccCC-ccCCcccCccccCHHHh
Confidence            865543 33456899999999975

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-39  Score=246.09  Aligned_cols=169  Identities=18%  Similarity=0.277  Sum_probs=150.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC------CcCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK------SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~------~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      .++|++++.||+|+||.||+|.. .+|+.||+|++++..      ....+.+.+|+.++++++||||+++++++.+    
T Consensus         9 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~----   84 (293)
T d1jksa_           9 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYEN----   84 (293)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC----
T ss_pred             ccCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE----
Confidence            36799999999999999999996 469999999997542      2235778999999999999999999999876    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC----ce
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL----VA  171 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~----~~  171 (205)
                         .+.+++||||+++|+|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++    .+
T Consensus        85 ---~~~~~iv~E~~~gg~L~~~i~~~~--~l~~~~~~~~~~qi~~al~yLH~---~~ivHrDiKp~Nill~~~~~~~~~v  156 (293)
T d1jksa_          85 ---KTDVILILELVAGGELFDFLAEKE--SLTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRI  156 (293)
T ss_dssp             ---SSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCSSSSSCCE
T ss_pred             ---CCEEEEEEEcCCCccccchhcccc--ccchhHHHHHHHHHHHHHHhhhh---cceeecccccceEEEecCCCcccce
Confidence               678999999999999999997654  79999999999999999999999   7999999999999998776    59


Q ss_pred             eEcCCCchhhcccccccccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ||+|||+|.............+|+.|+|||..
T Consensus       157 kl~DfG~a~~~~~~~~~~~~~~t~~y~APE~~  188 (293)
T d1jksa_         157 KIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIV  188 (293)
T ss_dssp             EECCCTTCEECTTSCBCSCCCCCGGGCCHHHH
T ss_pred             EecchhhhhhcCCCccccccCCCCcccCHHHH
Confidence            99999999988877777777999999999964

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-40  Score=249.98  Aligned_cols=173  Identities=24%  Similarity=0.408  Sum_probs=143.7

Q ss_pred             HHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           19 LEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        19 ~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      |....++|++++.||+|+||+||+|.++++++||+|+++.. ....+.+.+|+.++++++||||+++++.+.+       
T Consensus        12 ~~i~~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~-~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~-------   83 (285)
T d1fmka3          12 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-------   83 (285)
T ss_dssp             SBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTT-SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-------
T ss_pred             eEcCHHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcc-cCCHHHHHHHHHHHHhcccCCEeEEEEEEec-------
Confidence            33345789999999999999999999888889999999744 4456789999999999999999999998743       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                       ...++||||+++|+|.+++.......+++..++.++.|++.||.|||+   .+++||||||+||+|++++.+||+|||+
T Consensus        84 -~~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~---~~ivH~DlKp~NIll~~~~~~kl~DfGl  159 (285)
T d1fmka3          84 -EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGL  159 (285)
T ss_dssp             -SSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCT
T ss_pred             -CCeEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhh---hheecccccceEEEECCCCcEEEcccch
Confidence             357899999999999999876544579999999999999999999999   7999999999999999999999999999


Q ss_pred             hhhccccccc--ccccccccccCCCCC
Q 028725          179 PLLAENAEKV--GHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~~~--~~~~~~~~~~aPE~~  203 (205)
                      |+........  ....+|+.|+|||..
T Consensus       160 a~~~~~~~~~~~~~~~gt~~y~aPE~~  186 (285)
T d1fmka3         160 ARLIEDNEYTARQGAKFPIKWTAPEAA  186 (285)
T ss_dssp             TC--------------CCGGGSCHHHH
T ss_pred             hhhccCCCceeeccccccccccChHHH
Confidence            9877554322  335789999999964

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-39  Score=247.66  Aligned_cols=170  Identities=23%  Similarity=0.390  Sum_probs=133.2

Q ss_pred             hcCCCcceeeccCcceEEEEEEecC-C---cEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKN-G---TFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~-~---~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .++|++.+.||+|+||+||+|.++. +   ..||+|.+.... ....+.+.+|+.++++++||||+++++++.+      
T Consensus        25 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~------   98 (299)
T d1jpaa_          25 ISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTK------   98 (299)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS------
T ss_pred             hhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEee------
Confidence            3567888999999999999999642 3   258888886543 3345678999999999999999999999866      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                       .+..++||||+++|+|.+++.... ..+++..+..++.|++.||.|||+   .+++||||||+||+|++++.+||+|||
T Consensus        99 -~~~~~iv~Ey~~~g~L~~~~~~~~-~~l~~~~~~~i~~qia~gl~yLH~---~~iiHrDlKp~NILl~~~~~~Kl~DFG  173 (299)
T d1jpaa_          99 -STPVMIITEFMENGSLDSFLRQND-GQFTVIQLVGMLRGIAAGMKYLAD---MNYVHRDLAARNILVNSNLVCKVSDFG  173 (299)
T ss_dssp             -SSSCEEEEECCTTEEHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC-
T ss_pred             -CCEEEEEEEecCCCcceeeecccc-CCCCHHHHHHHHHHHHHHHHHHhh---CCCccCccccceEEECCCCcEEECCcc
Confidence             567899999999999999887654 468999999999999999999999   799999999999999999999999999


Q ss_pred             chhhccccccc------ccccccccccCCCCC
Q 028725          178 LPLLAENAEKV------GHVTPYSGSINPTNS  203 (205)
Q Consensus       178 ~a~~~~~~~~~------~~~~~~~~~~aPE~~  203 (205)
                      +|+........      ....+|..|||||..
T Consensus       174 la~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~  205 (299)
T d1jpaa_         174 LSRFLEDDTSDPTYTSALGGKIPIRWTAPEAI  205 (299)
T ss_dssp             ----------------------CGGGSCHHHH
T ss_pred             cceEccCCCCcceeeecccccCCccccCHHHH
Confidence            99877654322      123578899999963

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.5e-38  Score=241.31  Aligned_cols=169  Identities=17%  Similarity=0.297  Sum_probs=150.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcC---------HHHHHHHHHHHhccC-CCcccccccceee
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHS---------TRNFMHHIELISKLR-HCHLVSALGHCFE   91 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~---------~~~~~~e~~~l~~l~-~~~i~~~~~~~~~   91 (205)
                      ..+|++.+.||+|+||+||+|.. .+|+.||+|++++.....         .+.+.+|+.++++++ ||||+++++++.+
T Consensus         2 ~~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~   81 (277)
T d1phka_           2 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   81 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             cccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence            46899999999999999999996 468999999997653221         235778999999997 9999999999876


Q ss_pred             ecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCce
Q 028725           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVA  171 (205)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~  171 (205)
                             +...|+||||+++|+|.+++..+.  .+++..+..++.|++.||.|||+   .+|+||||||+||++++++.+
T Consensus        82 -------~~~~~ivmE~~~~g~L~~~l~~~~--~l~e~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nill~~~~~~  149 (277)
T d1phka_          82 -------NTFFFLVFDLMKKGELFDYLTEKV--TLSEKETRKIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNI  149 (277)
T ss_dssp             -------SSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCE
T ss_pred             -------CcceEEEEEcCCCchHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---cCCcccccccceEEEcCCCCe
Confidence                   678999999999999999997654  78999999999999999999999   799999999999999999999


Q ss_pred             eEcCCCchhhcccccccccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ||+|||+++............||..|+|||..
T Consensus       150 kl~DFG~a~~~~~~~~~~~~~gt~~y~~PE~~  181 (277)
T d1phka_         150 KLTDFGFSCQLDPGEKLREVCGTPSYLAPEII  181 (277)
T ss_dssp             EECCCTTCEECCTTCCBCCCCSCGGGCCHHHH
T ss_pred             EEccchheeEccCCCceeeeeccCCCCCHHHh
Confidence            99999999988776666667999999999963

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-38  Score=248.30  Aligned_cols=166  Identities=16%  Similarity=0.271  Sum_probs=148.2

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc---CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      ++|++++.||+|+||.||+|.. .+|+.||+|++++.   .....+.+.+|+.+++.++||||+++++.+.+       .
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-------~  113 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKD-------N  113 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-------S
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccc-------c
Confidence            6799999999999999999996 46999999999654   34556778999999999999999999998876       6


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...++++|++.+|+|.+.+....  .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||+|
T Consensus       114 ~~~~~v~e~~~~g~l~~~l~~~~--~l~e~~~~~i~~qi~~aL~yLH~---~~iiHRDIKP~NILl~~~g~ikL~DFG~a  188 (350)
T d1rdqe_         114 SNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFA  188 (350)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             cccccccccccccchhhhHhhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCEecCcCCHHHcccCCCCCEEeeeceee
Confidence            78999999999999999987654  68999999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +.....  .....||+.|||||..
T Consensus       189 ~~~~~~--~~~~~Gt~~Y~APE~~  210 (350)
T d1rdqe_         189 KRVKGR--TWTLCGTPEALAPEII  210 (350)
T ss_dssp             EECSSC--BCCCEECGGGCCHHHH
T ss_pred             eecccc--cccccCccccCCHHHH
Confidence            877643  3346899999999964

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-38  Score=241.36  Aligned_cols=170  Identities=21%  Similarity=0.380  Sum_probs=137.5

Q ss_pred             hcCCCcceeeccCcceEEEEEEecCC-----cEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKNG-----TFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~~-----~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      .+.|+..+.||+|+||.||+|.+++.     ..||+|+++.... .....+.+|+.++++++||||+++++++.+     
T Consensus         6 ~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~-----   80 (283)
T d1mqba_           6 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISK-----   80 (283)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-----
T ss_pred             HHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEec-----
Confidence            46788999999999999999996542     3699999965432 334568899999999999999999999876     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                        ....++++|++.++++.+.+.... ..+++..+..++.|++.||.|||+   .+|+||||||+||+|++++.+||+||
T Consensus        81 --~~~~~~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~~i~~gl~~lH~---~~iiHrDlKp~NILl~~~~~~Kl~DF  154 (283)
T d1mqba_          81 --YKPMMIITEYMENGALDKFLREKD-GEFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDF  154 (283)
T ss_dssp             --SSSEEEEEECCTTEEHHHHHHHTT-TCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC
T ss_pred             --CCceEEEEEecccCcchhhhhccc-ccccHHHHHHHHHHHHHhhhhccc---cccccCccccceEEECCCCeEEEccc
Confidence              567999999999999999877544 478999999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhcccccc----cccccccccccCCCCC
Q 028725          177 NLPLLAENAEK----VGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~~----~~~~~~~~~~~aPE~~  203 (205)
                      |+|+.......    .....||..|+|||..
T Consensus       155 Gla~~~~~~~~~~~~~~~~~gt~~Y~APE~l  185 (283)
T d1mqba_         155 GLSRVLEDDPEATYTTSGGKIPIRWTAPEAI  185 (283)
T ss_dssp             CC-----------------CCCGGGSCHHHH
T ss_pred             chhhcccCCCccceEeccCCCCccccCHHHH
Confidence            99987665432    2234688999999953

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-38  Score=240.47  Aligned_cols=168  Identities=19%  Similarity=0.311  Sum_probs=141.5

Q ss_pred             hcCCCccee-eccCcceEEEEEEec---CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           23 TNNFDTSAF-MGEGSKGQMYRGRLK---NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        23 ~~~y~~~~~-lg~g~~g~V~~~~~~---~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .++|.+.+. ||+|+||.||+|.++   ++..||+|+++... ....+.+.+|+.++++++||||+++++++..      
T Consensus         7 ~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~------   80 (285)
T d1u59a_           7 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA------   80 (285)
T ss_dssp             GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES------
T ss_pred             ccCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc------
Confidence            356777774 999999999999864   35579999997553 3345778999999999999999999998753      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                        +.+++||||+++|+|.+++.... ..+++..+..++.|++.||.|||+   .+|+||||||+||++++++.+||+|||
T Consensus        81 --~~~~lvmE~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~gL~ylH~---~~iiHrDlKp~Nill~~~~~~Kl~DFG  154 (285)
T d1u59a_          81 --EALMLVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFG  154 (285)
T ss_dssp             --SSEEEEEECCTTEEHHHHHTTCT-TTSCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEEETTEEEECCCT
T ss_pred             --CeEEEEEEeCCCCcHHHHhhccc-cCCCHHHHHHHHHHHHHHHHHHHh---CCeecCcCchhheeeccCCceeeccch
Confidence              35899999999999999876443 478999999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccc----cccccccccccCCCC
Q 028725          178 LPLLAENAEK----VGHVTPYSGSINPTN  202 (205)
Q Consensus       178 ~a~~~~~~~~----~~~~~~~~~~~aPE~  202 (205)
                      +|+.......    .....+|..|+|||.
T Consensus       155 la~~~~~~~~~~~~~~~~~gt~~y~aPE~  183 (285)
T d1u59a_         155 LSKALGADDSYYTARSAGKWPLKWYAPEC  183 (285)
T ss_dssp             TCEECTTCSCEECCCCSSCCCGGGCCHHH
T ss_pred             hhhcccccccccccccccccCccccChHH
Confidence            9987654332    223478899999995

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-38  Score=242.96  Aligned_cols=169  Identities=15%  Similarity=0.191  Sum_probs=149.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      .++|++++.||+|+||+||+|... +++.||+|+++... .+...+.+|+.+++.++||||+++++++.+       .+.
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~-~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-------~~~   75 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFES-------MEE   75 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEE-------TTE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCc-ccHHHHHHHHHHHHhCCCCCCCeEEEEEEE-------CCE
Confidence            578999999999999999999964 68899999997543 334567899999999999999999998876       678


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCC--CceeEcCCCch
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN--LVAKISSYNLP  179 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~--~~~~l~Dfg~a  179 (205)
                      +|+||||++|++|.+++.... ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.+  +.++|+|||++
T Consensus        76 ~~lvmE~~~gg~L~~~i~~~~-~~l~e~~~~~i~~qi~~al~yLH~---~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~  151 (321)
T d1tkia_          76 LVMIFEFISGLDIFERINTSA-FELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQA  151 (321)
T ss_dssp             EEEEECCCCCCBHHHHHTSSS-CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCTTC
T ss_pred             EEEEEecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---cCCCcccccccceeecCCCceEEEEcccchh
Confidence            999999999999999997653 468999999999999999999999   799999999999999854  58999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +............+|+.|+|||..
T Consensus       152 ~~~~~~~~~~~~~~t~~y~ape~~  175 (321)
T d1tkia_         152 RQLKPGDNFRLLFTAPEYYAPEVH  175 (321)
T ss_dssp             EECCTTCEEEEEESCGGGSCHHHH
T ss_pred             hccccCCcccccccccccccchhc
Confidence            888776666667899999999953

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-38  Score=249.49  Aligned_cols=168  Identities=21%  Similarity=0.306  Sum_probs=143.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC---CcCHHHHHH---HHHHHhccCCCcccccccceeeeccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMH---HIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~---e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      .++|++.+.||+|+||.||+|... +|+.||+|++.+..   ......+.+   ++.+++.++||||+++.+++.+    
T Consensus         3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~----   78 (364)
T d1omwa3           3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT----   78 (364)
T ss_dssp             STTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEEC----
T ss_pred             HHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEE----
Confidence            578999999999999999999964 69999999996432   222233333   4677778889999999998876    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                         .+.+|+||||+++|+|.+++....  .+++..++.++.|++.||.|||+   .+++||||||+||+++.++.+||+|
T Consensus        79 ---~~~~~ivmE~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~aL~ylH~---~~iiHrDlKP~NILl~~~g~iKl~D  150 (364)
T d1omwa3          79 ---PDKLSFILDLMNGGDLHYHLSQHG--VFSEADMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISD  150 (364)
T ss_dssp             ---SSEEEEEECCCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECSSSCEEECC
T ss_pred             ---CCEEEEEEEecCCCcHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHH---CCccceeeccceeEEcCCCcEEEee
Confidence               678999999999999999997654  68899999999999999999999   7999999999999999999999999


Q ss_pred             CCchhhcccccccccccccccccCCCCC
Q 028725          176 YNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ||+|+..... ......||+.|+|||..
T Consensus       151 FGla~~~~~~-~~~~~~GT~~y~APE~~  177 (364)
T d1omwa3         151 LGLACDFSKK-KPHASVGTHGYMAPEVL  177 (364)
T ss_dssp             CTTCEECSSS-CCCSCCSCGGGCCHHHH
T ss_pred             eceeeecCCC-cccccccccccchhHHh
Confidence            9999876654 34456899999999964

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-38  Score=245.25  Aligned_cols=172  Identities=23%  Similarity=0.402  Sum_probs=142.3

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEecC-C-----cEEEEEEeccc-CCcCHHHHHHHHHHHhcc-CCCcccccccceeee
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLKN-G-----TFIAIRCLKMK-KSHSTRNFMHHIELISKL-RHCHLVSALGHCFEC   92 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~~-~-----~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~   92 (205)
                      ...++|++++.||+|+||+||+|.+.. +     ..||+|.+... .......+.+|+.++.++ +||||+++++++.+ 
T Consensus        34 i~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~-  112 (325)
T d1rjba_          34 FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTL-  112 (325)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECS-
T ss_pred             CCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEee-
Confidence            445789999999999999999999642 2     36899988654 344566788999999998 89999999999876 


Q ss_pred             cccCCCCCeEEEEEeecCCCcHHHhhccCCC---------------------CCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q 028725           93 YFDDSSVSRIFLIFEYVPNGTLRSWISGHAW---------------------QSLTWTQRISAAIGVARGIQFLHTGIVP  151 (205)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~---------------------~~~~~~~~~~i~~~i~~~l~~lh~~~~~  151 (205)
                            .+.+++||||+++|+|.+++..+..                     ..+++..++.++.|++.||.|||+   .
T Consensus       113 ------~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~---~  183 (325)
T d1rjba_         113 ------SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF---K  183 (325)
T ss_dssp             ------SSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH---T
T ss_pred             ------CCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHh---C
Confidence                  5679999999999999999975421                     247889999999999999999999   7


Q ss_pred             ceeecCCccccEEeCCCCceeEcCCCchhhcccccc---cccccccccccCCCC
Q 028725          152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTN  202 (205)
Q Consensus       152 ~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~  202 (205)
                      +|+||||||+||+++.++.+||+|||+|+.......   .....+|+.|||||.
T Consensus       184 ~IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~  237 (325)
T d1rjba_         184 SCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPES  237 (325)
T ss_dssp             TEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHH
T ss_pred             CeeeccCchhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHH
Confidence            999999999999999999999999999987665432   233567999999995

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-38  Score=238.24  Aligned_cols=161  Identities=19%  Similarity=0.270  Sum_probs=134.4

Q ss_pred             eeeccCcceEEEEEEecC---CcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEE
Q 028725           30 AFMGEGSKGQMYRGRLKN---GTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (205)
Q Consensus        30 ~~lg~g~~g~V~~~~~~~---~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (205)
                      +.||+|+||.||+|.+++   ++.||+|+++...  ....+.+.+|+.++++++||||++++++|..        +..++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~--------~~~~l   84 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA--------ESWML   84 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES--------SSEEE
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc--------CCEEE
Confidence            579999999999998653   5689999996543  2335678999999999999999999998743        35789


Q ss_pred             EEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhccc
Q 028725          105 IFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  184 (205)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~  184 (205)
                      ||||+++|+|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||++++++.++|+|||+|+....
T Consensus        85 vmE~~~~g~L~~~l~~~~--~l~~~~~~~i~~qi~~gl~ylH~---~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~  159 (277)
T d1xbba_          85 VMEMAELGPLNKYLQQNR--HVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA  159 (277)
T ss_dssp             EEECCTTEEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCEECCT
T ss_pred             EEEcCCCCcHHHHHhhcc--CCCHHHHHHHHHHHHHHHhhHHh---CCcccCCCcchhhcccccCcccccchhhhhhccc
Confidence            999999999999988654  78999999999999999999999   7999999999999999999999999999986654


Q ss_pred             cc----ccccccccccccCCCCC
Q 028725          185 AE----KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       185 ~~----~~~~~~~~~~~~aPE~~  203 (205)
                      ..    ......||+.|+|||..
T Consensus       160 ~~~~~~~~~~~~gt~~y~APE~l  182 (277)
T d1xbba_         160 DENYYKAQTHGKWPVKWYAPECI  182 (277)
T ss_dssp             TCSEEEC----CCCGGGCCHHHH
T ss_pred             cccccccccccCCCceecCchhh
Confidence            32    22234789999999953

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-37  Score=239.49  Aligned_cols=171  Identities=15%  Similarity=0.238  Sum_probs=145.2

Q ss_pred             hcCCCcce-eeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhc-cCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSA-FMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISK-LRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~-~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|.+.. .||+|+||.||+|.. .+++.||+|+++.     ...+.+|+.++.+ .+||||+++++++.+..   ...
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~-----~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~---~~~   81 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLY---AGR   81 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEE---TTE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC-----cHHHHHHHHHHHHhcCCCCCCeEEEEEeecc---cCC
Confidence            46898865 699999999999995 5699999999963     3456788987654 58999999999875421   124


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC---CCceeEcCC
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---NLVAKISSY  176 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~---~~~~~l~Df  176 (205)
                      ..+|+||||++||+|.+++..+....+++..+..++.|++.||.|||+   .+|+||||||+||+++.   .+.+||+||
T Consensus        82 ~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~---~~iiHRDiKp~NIll~~~~~~~~~Kl~DF  158 (335)
T d2ozaa1          82 KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDF  158 (335)
T ss_dssp             EEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCSSTTCCEEECCC
T ss_pred             CEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHH---cCCcccccccccccccccccccccccccc
Confidence            578999999999999999987655679999999999999999999999   79999999999999985   467999999


Q ss_pred             CchhhcccccccccccccccccCCCCCC
Q 028725          177 NLPLLAENAEKVGHVTPYSGSINPTNSA  204 (205)
Q Consensus       177 g~a~~~~~~~~~~~~~~~~~~~aPE~~~  204 (205)
                      |+|+............||+.|+|||...
T Consensus       159 G~a~~~~~~~~~~~~~gt~~y~aPE~~~  186 (335)
T d2ozaa1         159 GFAKETTSHNSLTTPCYTPYYVAPEVLG  186 (335)
T ss_dssp             TTCEECCCCCCCCCCSCCCSSCCCCCCC
T ss_pred             ceeeeccCCCccccccCCcccCCcHHHc
Confidence            9998887777667789999999999753

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-37  Score=239.30  Aligned_cols=168  Identities=23%  Similarity=0.361  Sum_probs=145.3

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEeccc---CCcCHHHHHHHHHHHh-ccCCCcccccccceeeecccCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELIS-KLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~-~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      ++|++++.||+|+||+||+|... +++.||+|++++.   .....+.+..|..++. .++||||+++++++.+       
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~-------   74 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQT-------   74 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEEC-------
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEcc-------
Confidence            57999999999999999999964 6999999999754   2445566677777655 6899999999999876       


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      .+..|+||||+++|+|.+++....  .+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||+
T Consensus        75 ~~~~yivmEy~~~g~L~~~i~~~~--~~~e~~~~~~~~qi~~al~ylH~---~~iiHrDikp~NiL~~~~~~~kl~DFG~  149 (320)
T d1xjda_          75 KENLFFVMEYLNGGDLMYHIQSCH--KFDLSRATFYAAEIILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFGM  149 (320)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             CCceeEEEeecCCCcHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCcccceeecCCCceeccccch
Confidence            678999999999999999998654  68899999999999999999999   7999999999999999999999999999


Q ss_pred             hhhcccc-cccccccccccccCCCCC
Q 028725          179 PLLAENA-EKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~-~~~~~~~~~~~~~aPE~~  203 (205)
                      ++..... .......||+.|+|||..
T Consensus       150 a~~~~~~~~~~~~~~gt~~y~aPE~~  175 (320)
T d1xjda_         150 CKENMLGDAKTNTFCGTPDYIAPEIL  175 (320)
T ss_dssp             CBCCCCTTCCBCCCCSCGGGCCHHHH
T ss_pred             hhhcccccccccccCCCCCcCCHHHH
Confidence            9865543 334446899999999964

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-37  Score=235.99  Aligned_cols=168  Identities=20%  Similarity=0.364  Sum_probs=143.1

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .+|++++.||+|+||.||+|.. .+|+.||+|+++...  ......+.+|+.++++++||||+++++.+.+       .+
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~-------~~   74 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT-------EN   74 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEE-------TT
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEecccccc-------cc
Confidence            5899999999999999999995 569999999996553  2346788899999999999999999999977       67


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++||||+.+ ++.+++.......+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||+|+
T Consensus        75 ~~~iv~e~~~~-~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~---~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~  150 (298)
T d1gz8a_          75 KLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR  150 (298)
T ss_dssp             EEEEEEECCSE-EHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSTTHHH
T ss_pred             ceeEEEeecCC-chhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhc---CCEEccccCchheeecccCcceeccCCcce
Confidence            89999999966 55555544444579999999999999999999999   799999999999999999999999999998


Q ss_pred             hccccc-ccccccccccccCCCC
Q 028725          181 LAENAE-KVGHVTPYSGSINPTN  202 (205)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~~aPE~  202 (205)
                      ...... ......||+.|+|||.
T Consensus       151 ~~~~~~~~~~~~~gt~~y~apE~  173 (298)
T d1gz8a_         151 AFGVPVRTYTHEVVTLWYRAPEI  173 (298)
T ss_dssp             HHCCCSBCTTCCBCCCTTCCHHH
T ss_pred             eccCCcccceeecccceeeehhh
Confidence            776543 4445689999999995

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-37  Score=236.22  Aligned_cols=167  Identities=19%  Similarity=0.368  Sum_probs=138.3

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCc----EEEEEEeccc-CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGT----FIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~----~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .+|++++.||+|+||+||+|.+. +|+    +||+|.++.. .....+.+.+|+.++++++||||++++++|.+      
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~------   82 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT------   82 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEES------
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec------
Confidence            56999999999999999999964 344    6888888644 34557789999999999999999999999865      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCC
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  177 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg  177 (205)
                        +..+++++++.+++|.+.+.... ..+++..++.++.|++.||.|||+   .+|+||||||+||++++++.+||+|||
T Consensus        83 --~~~~~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~qi~~gl~yLH~---~~iiHrDlKp~NIll~~~~~~kl~DFG  156 (317)
T d1xkka_          83 --STVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFG  156 (317)
T ss_dssp             --SSEEEEEECCTTCBHHHHHHHTS-SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCCS
T ss_pred             --CCeeEEEEeccCCcccccccccc-cCCCHHHHHHHHHHHHHHHHHHHH---cCcccCcchhhcceeCCCCCeEeeccc
Confidence              35788899999999999887553 478999999999999999999999   799999999999999999999999999


Q ss_pred             chhhcccccc---cccccccccccCCCC
Q 028725          178 LPLLAENAEK---VGHVTPYSGSINPTN  202 (205)
Q Consensus       178 ~a~~~~~~~~---~~~~~~~~~~~aPE~  202 (205)
                      +|+.......   .....||..|+|||.
T Consensus       157 la~~~~~~~~~~~~~~~~gt~~y~APE~  184 (317)
T d1xkka_         157 LAKLLGAEEKEYHAEGGKVPIKWMALES  184 (317)
T ss_dssp             HHHHTTTTCC--------CCTTTSCHHH
T ss_pred             cceecccccccccccccccCccccChHH
Confidence            9987765432   223468999999995

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.9e-37  Score=232.79  Aligned_cols=173  Identities=14%  Similarity=0.263  Sum_probs=140.0

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCc---CHHHHHHHHHHHhccCCCcccccccceeeecccCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSH---STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   98 (205)
                      .++|++.+.||+|+||.||+|.. .+|+.||+|+++.....   ....+.+|+.+++.++||||+++++++....   ..
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~---~~   82 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAET---PA   82 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEC---SS
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeecc---CC
Confidence            46799999999999999999995 57999999999765432   2456889999999999999999999886521   22


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ...+|+||||+++++|.+++....  .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++..+++|||.
T Consensus        83 ~~~~~lvmE~~~g~~L~~~~~~~~--~l~~~~~~~i~~qi~~al~~lH~---~~iiHrDiKP~NIll~~~~~~~l~d~~~  157 (277)
T d1o6ya_          83 GPLPYIVMEYVDGVTLRDIVHTEG--PMTPKRAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFGI  157 (277)
T ss_dssp             SEEEEEEEECCCEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTSCEEECCCTT
T ss_pred             CceEEEEEECCCCCEehhhhcccC--CCCHHHHHHHHHHHHHHHHHHHh---CCccCccccCcccccCccccceeehhhh
Confidence            345899999999999999887654  78999999999999999999999   7999999999999999999999999999


Q ss_pred             hhhccccc----ccccccccccccCCCCC
Q 028725          179 PLLAENAE----KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~----~~~~~~~~~~~~aPE~~  203 (205)
                      +.......    ......||+.|+|||+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~  186 (277)
T d1o6ya_         158 ARAIADSGNSVTQTAAVIGTAQYLSPEQA  186 (277)
T ss_dssp             CEECC----------------TTCCHHHH
T ss_pred             hhhhccccccccccccccCcccccCHHHH
Confidence            86554332    33445899999999974

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=235.48  Aligned_cols=170  Identities=19%  Similarity=0.317  Sum_probs=133.0

Q ss_pred             HhcCCCcceeeccCcceEEEEEEecC----CcEEEEEEecccCC-cCHHHHHHHHHHHhccCCCcccccccceeeecccC
Q 028725           22 ATNNFDTSAFMGEGSKGQMYRGRLKN----GTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (205)
Q Consensus        22 ~~~~y~~~~~lg~g~~g~V~~~~~~~----~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   96 (205)
                      ..++|++++.||+|+||.||+|.+..    +..||+|.++.... ...+.+.+|+.++++++||||+++++++.+     
T Consensus         5 ~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~-----   79 (273)
T d1mp8a_           5 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE-----   79 (273)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-----
T ss_pred             CHHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-----
Confidence            35789999999999999999998642    34688898865432 335678899999999999999999998743     


Q ss_pred             CCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCC
Q 028725           97 SSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                         +..++||||+++|++.+++.... ..+++..++.++.|++.||.|||+   .+++||||||+||++++++.+||+||
T Consensus        80 ---~~~~iv~E~~~~g~l~~~~~~~~-~~l~~~~~~~~~~qi~~gl~ylH~---~~iiHrDlKp~NIll~~~~~~Kl~Df  152 (273)
T d1mp8a_          80 ---NPVWIIMELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDF  152 (273)
T ss_dssp             ---SSCEEEEECCTTEEHHHHHHHTT-TTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECC-
T ss_pred             ---CeEEEEEEeccCCcHHhhhhccC-CCCCHHHHHHHHHHHHHHhhhhcc---cCeeccccchhheeecCCCcEEEccc
Confidence               46899999999999999876543 468999999999999999999999   79999999999999999999999999


Q ss_pred             Cchhhccccc--ccccccccccccCCCCC
Q 028725          177 NLPLLAENAE--KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~--~~~~~~~~~~~~aPE~~  203 (205)
                      |+|+......  ......+|+.|+|||..
T Consensus       153 G~a~~~~~~~~~~~~~~~gt~~y~apE~l  181 (273)
T d1mp8a_         153 GLSRYMEDSTYYKASKGKLPIKWMAPESI  181 (273)
T ss_dssp             ------------------CCGGGCCHHHH
T ss_pred             hhheeccCCcceeccceecCcccchhhHh
Confidence            9998766433  33345789999999963

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-37  Score=235.21  Aligned_cols=164  Identities=21%  Similarity=0.311  Sum_probs=136.7

Q ss_pred             cceeeccCcceEEEEEEe-cCCcEEEEEEecccCCc-----CHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           28 TSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSH-----STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        28 ~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~-----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      .++.||+|+||+||+|.. .+|+.||+|+++.....     ..+.+.+|+.+++.++||||+++++++.+       .+.
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~-------~~~   74 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGH-------KSN   74 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECC-------TTC
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeecc-------CCc
Confidence            467899999999999995 46999999999755322     23568899999999999999999999876       667


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      +++||||+.++++..+...+  ..+++..+..++.|++.||.|||+   .+++||||||+||++++++.+||+|||+|+.
T Consensus        75 ~~ivmE~~~~~~~~~~~~~~--~~l~~~~~~~~~~qil~aL~~lH~---~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~  149 (299)
T d1ua2a_          75 ISLVFDFMETDLEVIIKDNS--LVLTPSHIKAYMLMTLQGLEYLHQ---HWILHRDLKPNNLLLDENGVLKLADFGLAKS  149 (299)
T ss_dssp             CEEEEECCSEEHHHHHTTCC--SSCCSSHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCCGGGST
T ss_pred             eeehhhhhcchHHhhhhhcc--cCCCHHHHHHHHHHHHHHHHHhhc---cceecccCCcceEEecCCCccccccCccccc
Confidence            99999999887777666544  368888999999999999999999   7999999999999999999999999999987


Q ss_pred             ccccc-ccccccccccccCCCCC
Q 028725          182 AENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ..... ......+|+.|+|||..
T Consensus       150 ~~~~~~~~~~~~gt~~y~aPE~~  172 (299)
T d1ua2a_         150 FGSPNRAYTHQVVTRWYRAPELL  172 (299)
T ss_dssp             TTSCCCCCCCSCCCCTTCCHHHH
T ss_pred             cCCCcccccceecChhhccHHHH
Confidence            66543 33445899999999963

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-37  Score=236.16  Aligned_cols=180  Identities=21%  Similarity=0.351  Sum_probs=138.8

Q ss_pred             cCHHHHHHHhcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCccccc
Q 028725           14 FSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSA   85 (205)
Q Consensus        14 ~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~i~~~   85 (205)
                      +...+|....++|++++.||+|+||.||+|.+.      +++.||+|+++... ....+.+.+|...+.++ +|+||+.+
T Consensus         3 ~~~~~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~   82 (299)
T d1ywna1           3 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   82 (299)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCCccccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEe
Confidence            355666666688999999999999999999954      24689999997543 23345677788877776 68999999


Q ss_pred             ccceeeecccCCCCCeEEEEEeecCCCcHHHhhccCC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q 028725           86 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA--------------WQSLTWTQRISAAIGVARGIQFLHTGIVP  151 (205)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~  151 (205)
                      .+.+..      .+...+++|||+++|+|.+++....              ...+++..+..++.|++.||.|||+   .
T Consensus        83 ~~~~~~------~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~---~  153 (299)
T d1ywna1          83 LGACTK------PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---R  153 (299)
T ss_dssp             EEEECS------TTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHH---T
T ss_pred             eeeecc------CCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHh---C
Confidence            887754      2456899999999999999986432              1358899999999999999999999   7


Q ss_pred             ceeecCCccccEEeCCCCceeEcCCCchhhccccc---ccccccccccccCCCC
Q 028725          152 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  202 (205)
Q Consensus       152 ~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~  202 (205)
                      +|+||||||+||+|++++.+||+|||+|+......   ......||+.|+|||.
T Consensus       154 ~ivHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~  207 (299)
T d1ywna1         154 KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPET  207 (299)
T ss_dssp             TCCCSCCCGGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHH
T ss_pred             CCcCCcCCccceeECCCCcEEEccCcchhhccccccccccCceeeCccccchhH
Confidence            99999999999999999999999999998765443   2234579999999995

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6e-37  Score=235.31  Aligned_cols=176  Identities=24%  Similarity=0.383  Sum_probs=147.0

Q ss_pred             HHHHHhcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccCCc-CHHHHHHHHHHHhccCCCccccccccee
Q 028725           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCF   90 (205)
Q Consensus        18 ~~~~~~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~   90 (205)
                      +++-..++|++.+.||+|+||.||+|.+.      ++..||+|+++..... ..+.+.+|+.++++++||||+++.+.+.
T Consensus         7 ~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~   86 (301)
T d1lufa_           7 SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCA   86 (301)
T ss_dssp             HTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             hccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeec
Confidence            34445688999999999999999999964      3568999999755433 3567899999999999999999999987


Q ss_pred             eecccCCCCCeEEEEEeecCCCcHHHhhccCC----------------------CCCCCHHHHHHHHHHHHHHHHHhhcC
Q 028725           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA----------------------WQSLTWTQRISAAIGVARGIQFLHTG  148 (205)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~----------------------~~~~~~~~~~~i~~~i~~~l~~lh~~  148 (205)
                      +       .+..++++|++++|+|.+++....                      ...+++..++.++.|++.||.|||+ 
T Consensus        87 ~-------~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~-  158 (301)
T d1lufa_          87 V-------GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE-  158 (301)
T ss_dssp             S-------SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred             c-------CCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhccc-
Confidence            6       567899999999999999986321                      1247888999999999999999999 


Q ss_pred             CCCceeecCCccccEEeCCCCceeEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          149 IVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       149 ~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                        .+++||||||+||+++.++.+||+|||+|+.......   .....++..|+|||..
T Consensus       159 --~~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~  214 (301)
T d1lufa_         159 --RKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESI  214 (301)
T ss_dssp             --TTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHH
T ss_pred             --CCeEeeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHH
Confidence              7999999999999999999999999999987655432   2335788999999953

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-37  Score=233.94  Aligned_cols=169  Identities=20%  Similarity=0.388  Sum_probs=137.7

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ...++|++++.||+|+||.||+|.++ |.+||+|+++.+  ...+.+.+|+.++++++||||+++++++.+      ..+
T Consensus         4 i~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~vAvK~i~~~--~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~------~~~   74 (262)
T d1byga_           4 LNMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVE------EKG   74 (262)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECC------C--
T ss_pred             cCHHHeEEeEEEecCCCeEEEEEEEC-CeEEEEEEECcH--HHHHHHHHHHHHHHhCCCCCEeeEEEEEEe------cCC
Confidence            34578999999999999999999985 889999999643  355778999999999999999999998864      134


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      .+++||||+++|+|.+++..+....+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++
T Consensus        75 ~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~---~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~  151 (262)
T d1byga_          75 GLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTK  151 (262)
T ss_dssp             CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC--
T ss_pred             cEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhcccccc---CceeccccchHhheecCCCCEeecccccce
Confidence            57999999999999999975543468999999999999999999999   799999999999999999999999999998


Q ss_pred             hcccccccccccccccccCCCCC
Q 028725          181 LAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ......  ....++..|+|||..
T Consensus       152 ~~~~~~--~~~~~~~~y~aPE~l  172 (262)
T d1byga_         152 EASSTQ--DTGKLPVKWTAPEAL  172 (262)
T ss_dssp             ------------CCTTTSCHHHH
T ss_pred             ecCCCC--ccccccccCCChHHH
Confidence            766543  335788999999953

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-36  Score=233.19  Aligned_cols=171  Identities=27%  Similarity=0.411  Sum_probs=143.1

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCc--EEEEEEeccc-CCcCHHHHHHHHHHHhcc-CCCcccccccceeeecccCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGT--FIAIRCLKMK-KSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDS   97 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~--~vaiK~~~~~-~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~   97 (205)
                      .++|++.+.||+|+||.||+|.+. ++.  .||+|.++.. .....+.+.+|+.+++++ +||||+++++++.+      
T Consensus         9 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~------   82 (309)
T d1fvra_           9 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH------   82 (309)
T ss_dssp             GGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEE------
T ss_pred             HHHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEec------
Confidence            378999999999999999999965 444  4678887543 344567799999999998 79999999999987      


Q ss_pred             CCCeEEEEEeecCCCcHHHhhccC--------------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccE
Q 028725           98 SVSRIFLIFEYVPNGTLRSWISGH--------------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDI  163 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~--------------~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~ni  163 (205)
                       .+..++||||+++|+|.+++..+              ....+++..+..++.|++.||.|+|+   .+++||||||+||
T Consensus        83 -~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~---~~iiHrDlkp~NI  158 (309)
T d1fvra_          83 -RGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNI  158 (309)
T ss_dssp             -TTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGE
T ss_pred             -CCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhc---CCccccccccceE
Confidence             67899999999999999998643              23578999999999999999999999   7999999999999


Q ss_pred             EeCCCCceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          164 LLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       164 lv~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +++.++.+||+|||+|+............+|..|+|||..
T Consensus       159 L~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l  198 (309)
T d1fvra_         159 LVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESL  198 (309)
T ss_dssp             EECGGGCEEECCTTCEESSCEECCC----CCTTTCCHHHH
T ss_pred             EEcCCCceEEccccccccccccccccceecCCcccchHHh
Confidence            9999999999999999877766666666899999999953

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.8e-36  Score=231.14  Aligned_cols=168  Identities=18%  Similarity=0.272  Sum_probs=142.5

Q ss_pred             cCCCcceeeccCcceEEEEEEecCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ++|++.+.||+|+||+||+|..++|+.||+|+++...  ....+.+.+|+.+++.++||||+++++.+..       .+.
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-------~~~   74 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHT-------KKR   74 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEEC-------SSC
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeeccc-------CCc
Confidence            6899999999999999999998889999999997653  3346788999999999999999999998876       678


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      .+++++++.++.+..+....  ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||.|..
T Consensus        75 ~~i~~e~~~~~~~~~~~~~~--~~l~~~~~~~i~~qi~~~L~~LH~---~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~  149 (286)
T d1ob3a_          75 LVLVFEHLDQDLKKLLDVCE--GGLESVTAKSFLLQLLNGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARA  149 (286)
T ss_dssp             EEEEEECCSEEHHHHHHTST--TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHHHH
T ss_pred             eeEEEEeehhhhHHHHHhhc--CCcchhhhHHHHHHHHHHHHHhcc---CcEEecCCCCceeeEcCCCCEEeccccccee
Confidence            99999999876666665544  479999999999999999999999   7999999999999999999999999999987


Q ss_pred             ccccc-ccccccccccccCCCCC
Q 028725          182 AENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       182 ~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ..... ......++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~y~~pE~~  172 (286)
T d1ob3a_         150 FGIPVRKYTHEIVTLWYRAPDVL  172 (286)
T ss_dssp             HCC---------CCCTTCCHHHH
T ss_pred             cccCccccceecccchhhhHHHH
Confidence            66543 33445789999999964

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-36  Score=231.41  Aligned_cols=170  Identities=20%  Similarity=0.338  Sum_probs=137.9

Q ss_pred             cCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHH--HHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFM--HHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~--~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      ++|.+.+.||+|+||+||+|++ +|+.||+|+++...   ...+.  .|+..+.+++||||+++++++.+..   .....
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~---~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~---~~~~~   75 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDN---GTWTQ   75 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC---SSSEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccc---hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCC---CcceE
Confidence            5688899999999999999997 58999999996432   23333  4555566789999999999997632   22346


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcC-----CCCceeecCCccccEEeCCCCceeEcCC
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTG-----IVPGVFSNNLKITDILLDQNLVAKISSY  176 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~-----~~~~i~h~dlkp~nilv~~~~~~~l~Df  176 (205)
                      .++||||+++|+|.+++...   .+++..++.++.|++.||.|+|..     ...+|+||||||+||+|+.++.+||+||
T Consensus        76 ~~lv~Ey~~~g~L~~~l~~~---~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DF  152 (303)
T d1vjya_          76 LWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADL  152 (303)
T ss_dssp             EEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCC
T ss_pred             EEEEEecccCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEec
Confidence            89999999999999999864   588999999999999999999962     1259999999999999999999999999


Q ss_pred             Cchhhccccc-----ccccccccccccCCCCC
Q 028725          177 NLPLLAENAE-----KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       177 g~a~~~~~~~-----~~~~~~~~~~~~aPE~~  203 (205)
                      |+++......     ......||+.|+|||..
T Consensus       153 Gl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  184 (303)
T d1vjya_         153 GLAVRHDSATDTIDIAPNHRVGTKRYMAPEVL  184 (303)
T ss_dssp             TTCEEEETTTTEECC----CCSCGGGCCHHHH
T ss_pred             CccccccCCCcceeccccceecccCcCChhhc
Confidence            9998765543     22345899999999974

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-36  Score=230.43  Aligned_cols=168  Identities=17%  Similarity=0.213  Sum_probs=141.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCc------CHHHHHHHHHHHhccC--CCcccccccceeeec
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSH------STRNFMHHIELISKLR--HCHLVSALGHCFECY   93 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~------~~~~~~~e~~~l~~l~--~~~i~~~~~~~~~~~   93 (205)
                      .++|++++.||+|+||.||+|.. .+|+.||+|++++....      ....+.+|+.++++++  ||||+++++++.+  
T Consensus         3 ~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~--   80 (273)
T d1xwsa_           3 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER--   80 (273)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC--
T ss_pred             CCeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEee--
Confidence            46899999999999999999995 46899999999754321      2344668999999986  8999999998876  


Q ss_pred             ccCCCCCeEEEEEeecCC-CcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC-CCce
Q 028725           94 FDDSSVSRIFLIFEYVPN-GTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-NLVA  171 (205)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~-~~~~  171 (205)
                           .+..++|||++.+ +++.+++..+.  .+++..++.++.|++.||.|||+   .+|+||||||+||+++. .+.+
T Consensus        81 -----~~~~~lv~e~~~~~~~l~~~~~~~~--~l~e~~~~~~~~qi~~al~~lH~---~~iiHrDiKp~NIll~~~~~~v  150 (273)
T d1xwsa_          81 -----PDSFVLILERPEPVQDLFDFITERG--ALQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGEL  150 (273)
T ss_dssp             -----SSEEEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEE
T ss_pred             -----CCeEEEEEEeccCcchHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHH---CCCccccCcccceEEecCCCeE
Confidence                 6789999999975 57878776543  78999999999999999999999   79999999999999985 4799


Q ss_pred             eEcCCCchhhcccccccccccccccccCCCCC
Q 028725          172 KISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       172 ~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +|+|||+|+..... ......||+.|+|||..
T Consensus       151 kl~DFG~a~~~~~~-~~~~~~GT~~y~aPE~~  181 (273)
T d1xwsa_         151 KLIDFGSGALLKDT-VYTDFDGTRVYSPPEWI  181 (273)
T ss_dssp             EECCCTTCEECCSS-CBCCCCSCGGGSCHHHH
T ss_pred             EECccccceecccc-cccccccCCCcCCHHHH
Confidence            99999999866543 33446899999999963

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=1.1e-35  Score=230.84  Aligned_cols=165  Identities=13%  Similarity=0.233  Sum_probs=143.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccC-CCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|++++.||+|+||+||+|.. .+|+.||+|+++.   ...+.+.+|+.+++.+. ||||+++.+++..     ....
T Consensus        34 ~d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~---~~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~-----~~~~  105 (328)
T d3bqca1          34 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP---VKKKKIKREIKILENLRGGPNIITLADIVKD-----PVSR  105 (328)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS---SCHHHHHHHHHHHHHHTTSTTBCCEEEEEEC-----TTTC
T ss_pred             CcCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECH---HHHHHHHHHHHHHHhccCCCCCcEEEEEEEe-----cCCC
Confidence            46799999999999999999996 5699999999963   34567889999999995 9999999988764     2345


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC-ceeEcCCCch
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-VAKISSYNLP  179 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~-~~~l~Dfg~a  179 (205)
                      .+++||||+.+++|..+.     ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++ .++|+|||+|
T Consensus       106 ~~~~v~e~~~~~~L~~~~-----~~l~e~~i~~i~~qil~aL~~LH~---~gIvHrDiKp~NILi~~~~~~vkl~DFG~a  177 (328)
T d3bqca1         106 TPALVFEHVNNTDFKQLY-----QTLTDYDIRFYMYEILKALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGLA  177 (328)
T ss_dssp             SEEEEEECCCSCBGGGTT-----TSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEEEECCGGGC
T ss_pred             ceeEEEeecCCCcHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhh---cccccccccccceEEcCCCCeeeecccccc
Confidence            799999999999987754     258899999999999999999999   7999999999999998654 6899999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +............+|..|+|||..
T Consensus       178 ~~~~~~~~~~~~~~t~~y~aPE~~  201 (328)
T d3bqca1         178 EFYHPGQEYNVRVASRYFKGPELL  201 (328)
T ss_dssp             EECCTTCCCCSCCSCGGGCCHHHH
T ss_pred             eeccCCCcccccccCccccCcccc
Confidence            988877777777999999999964

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-36  Score=231.15  Aligned_cols=182  Identities=19%  Similarity=0.308  Sum_probs=149.9

Q ss_pred             cccCHHHHHHHhcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccc
Q 028725           12 RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVS   84 (205)
Q Consensus        12 ~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~   84 (205)
                      ..+-.++|....++|++++.||+|+||.||+|.+.      ++..||+|+++... ......+.+|+.++++++||||++
T Consensus         8 ~~~~~~~~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~   87 (308)
T d1p4oa_           8 DVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR   87 (308)
T ss_dssp             SCCCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCC
T ss_pred             cCcCccceeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEee
Confidence            33334456566789999999999999999999863      25689999997543 233456889999999999999999


Q ss_pred             cccceeeecccCCCCCeEEEEEeecCCCcHHHhhccC--------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeec
Q 028725           85 ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGH--------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSN  156 (205)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--------~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~  156 (205)
                      +.+.+..       ....++||||+++|+|.+++...        ....+++..+..++.|++.||.|||+   .+|+||
T Consensus        88 ~~~~~~~-------~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~---~~ivHr  157 (308)
T d1p4oa_          88 LLGVVSQ-------GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHR  157 (308)
T ss_dssp             EEEEECS-------SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCS
T ss_pred             eeeEEec-------CCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhh---CCeeec
Confidence            9998865       56789999999999999987532        11347888999999999999999999   799999


Q ss_pred             CCccccEEeCCCCceeEcCCCchhhcccccc---cccccccccccCCCCC
Q 028725          157 NLKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  203 (205)
Q Consensus       157 dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~aPE~~  203 (205)
                      ||||+||+++.++.+||+|||+|+.......   .....+|+.|+|||..
T Consensus       158 Dlk~~NiLld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l  207 (308)
T d1p4oa_         158 DLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESL  207 (308)
T ss_dssp             CCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHH
T ss_pred             eEcCCceeecCCceEEEeecccceeccCCcceeeccceecccccCCHHHH
Confidence            9999999999999999999999987665432   2334788999999963

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-36  Score=228.55  Aligned_cols=169  Identities=20%  Similarity=0.346  Sum_probs=133.0

Q ss_pred             hcCCCcceeeccCcceEEEEEEecC--C--cEEEEEEecccC---CcCHHHHHHHHHHHhccCCCcccccccceeeeccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLKN--G--TFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~~--~--~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   95 (205)
                      .++|++.+.||+|+||+||+|.+..  +  ..||+|+++...   ....+.+.+|+.++++++||||+++++++.+    
T Consensus         7 ~~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~----   82 (273)
T d1u46a_           7 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT----   82 (273)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred             hHHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee----
Confidence            3679999999999999999998542  2  368999987542   3335678999999999999999999998854    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                          ...++|+||++++++.+.+..+. ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.+||+|
T Consensus        83 ----~~~~lv~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~qi~~gl~ylH~---~~iiHrDikp~NIll~~~~~vkl~D  154 (273)
T d1u46a_          83 ----PPMKMVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGD  154 (273)
T ss_dssp             ----SSCEEEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECC
T ss_pred             ----cchheeeeeecCcchhhhhhccc-CCCCHHHHHHHHHHHHHHHHHhhh---CCEeeeeecHHHhccccccceeecc
Confidence                35789999999999999877543 368999999999999999999999   7999999999999999999999999


Q ss_pred             CCchhhcccccc----cccccccccccCCCCC
Q 028725          176 YNLPLLAENAEK----VGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~~----~~~~~~~~~~~aPE~~  203 (205)
                      ||+++.......    .....++..|+|||..
T Consensus       155 fGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~  186 (273)
T d1u46a_         155 FGLMRALPQNDDHYVMQEHRKVPFAWCAPESL  186 (273)
T ss_dssp             CTTCEECCC-CCEEEC-----CCGGGCCHHHH
T ss_pred             chhhhhcccCCCcceecCccccCcccCCHHHH
Confidence            999987655432    2334678899999953

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-35  Score=226.35  Aligned_cols=175  Identities=19%  Similarity=0.297  Sum_probs=143.5

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cC-CcEEEEEEecccC--CcCHHHHHHHHHHHhcc---CCCcccccccceeeeccc
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KN-GTFIAIRCLKMKK--SHSTRNFMHHIELISKL---RHCHLVSALGHCFECYFD   95 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~-~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l---~~~~i~~~~~~~~~~~~~   95 (205)
                      .++|++++.||+|+||+||+|.. .+ ++.||+|+++...  ......+.+|+.+++.+   +||||+++++++..... 
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~-   84 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT-   84 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC-
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeeccccc-
Confidence            47899999999999999999996 44 5678999996542  23344566777776655   79999999998865322 


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcC
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  175 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~D  175 (205)
                       ......++++|++.++.+........ ..+++..+..++.|++.||.|||+   .+|+||||||+||++++++.++|+|
T Consensus        85 -~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~qi~~aL~yLH~---~~ivHrDiKp~NILi~~~~~~kl~d  159 (305)
T d1blxa_          85 -DRETKLTLVFEHVDQDLTTYLDKVPE-PGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLAD  159 (305)
T ss_dssp             -SSEEEEEEEEECCSCBHHHHHHHSCT-TCSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECS
T ss_pred             -ccCceEEEEEEeccCCchhhhhhccC-CCCCHHHHHHHHHHHHHHHHHHHh---CCEEecCCCccEEEEcCCCCeeecc
Confidence             12457899999998876655444332 578999999999999999999999   7999999999999999999999999


Q ss_pred             CCchhhcccccccccccccccccCCCCC
Q 028725          176 YNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ||+++............||+.|+|||..
T Consensus       160 fg~~~~~~~~~~~~~~~gT~~Y~APE~~  187 (305)
T d1blxa_         160 FGLARIYSFQMALTSVVVTLWYRAPEVL  187 (305)
T ss_dssp             CCSCCCCCGGGGGCCCCCCCTTCCHHHH
T ss_pred             hhhhhhhcccccCCCcccChhhcCcchh
Confidence            9999888777777778999999999964

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-35  Score=225.16  Aligned_cols=164  Identities=20%  Similarity=0.359  Sum_probs=138.2

Q ss_pred             ceeeccCcceEEEEEEecC----CcEEEEEEeccc-CCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEE
Q 028725           29 SAFMGEGSKGQMYRGRLKN----GTFIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~~----~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (205)
                      .+.||+|+||+||+|.+..    ...||+|.++.. .....+.+.+|++++++++||||+++++++.+      .....+
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~------~~~~~~  105 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR------SEGSPL  105 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEE------TTTEEE
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEe------cCCceE
Confidence            5689999999999999643    225899999753 34456779999999999999999999998865      145789


Q ss_pred             EEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchhhcc
Q 028725          104 LIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  183 (205)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~  183 (205)
                      +||||+++++|.+++.... ...++..+..++.|++.||.|||+   .+|+||||||+||++++++.+||+|||+++...
T Consensus       106 lv~E~~~~g~l~~~~~~~~-~~~~~~~~~~i~~qia~gL~~lH~---~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~  181 (311)
T d1r0pa_         106 VVLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMY  181 (311)
T ss_dssp             EEEECCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECSSGGGCCTT
T ss_pred             EEEEEeecCchhhhhcccc-ccchHHHHHHHHHHHHHhhhhhcc---cCcccCCccHHhEeECCCCCEEEecccchhhcc
Confidence            9999999999999987654 467788899999999999999999   799999999999999999999999999998665


Q ss_pred             cccc-----cccccccccccCCCC
Q 028725          184 NAEK-----VGHVTPYSGSINPTN  202 (205)
Q Consensus       184 ~~~~-----~~~~~~~~~~~aPE~  202 (205)
                      ....     .....+|..|+|||.
T Consensus       182 ~~~~~~~~~~~~~~gt~~y~aPE~  205 (311)
T d1r0pa_         182 DKEFDSVHNKTGAKLPVKWMALES  205 (311)
T ss_dssp             TTTCCCTTCTTCSSCCGGGSCHHH
T ss_pred             ccccccceecccccccccccChHH
Confidence            4332     222468899999995

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-35  Score=230.82  Aligned_cols=171  Identities=20%  Similarity=0.298  Sum_probs=139.6

Q ss_pred             cCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeE
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~  102 (205)
                      .+|+..+.||+|+||+||+|... +|+.||+|+++......    .+|+.+++.++||||+++.+++..... ......+
T Consensus        20 ~~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~----~~Ei~il~~l~h~niv~~~~~~~~~~~-~~~~~~~   94 (350)
T d1q5ka_          20 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK----NRELQIMRKLDHCNIVRLRYFFYSSGE-KKDEVYL   94 (350)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSSC----CHHHHHHHHCCCTTBCCEEEEEEEC---CCSCCEE
T ss_pred             CCcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccchHH----HHHHHHHHhcCCCCCCcEEEEEEecCc-cCCceEE
Confidence            36889999999999999999964 69999999997554322    369999999999999999998865322 1234568


Q ss_pred             EEEEeecCCCcHHHhhc-cCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC-ceeEcCCCchh
Q 028725          103 FLIFEYVPNGTLRSWIS-GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-VAKISSYNLPL  180 (205)
Q Consensus       103 ~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~-~~~l~Dfg~a~  180 (205)
                      ++||||++++.+..+.. ......+++..+..++.|++.||.|||+   .+|+||||||+||+++.++ .+||+|||+++
T Consensus        95 ~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~---~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~  171 (350)
T d1q5ka_          95 NLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAK  171 (350)
T ss_dssp             EEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTTCCEEECCCTTCE
T ss_pred             EEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHh---cCCcccCCCcceEEEecCCCceeEecccchh
Confidence            99999998754444332 1222479999999999999999999999   7999999999999999775 89999999998


Q ss_pred             hcccccccccccccccccCCCC
Q 028725          181 LAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      ............+|..|+|||.
T Consensus       172 ~~~~~~~~~~~~gt~~y~aPE~  193 (350)
T d1q5ka_         172 QLVRGEPNVSYICSRYYRAPEL  193 (350)
T ss_dssp             ECCTTSCCCSCCSCTTSCCHHH
T ss_pred             hccCCcccccccccccccChHH
Confidence            8777666666799999999995

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-35  Score=229.18  Aligned_cols=172  Identities=15%  Similarity=0.258  Sum_probs=139.3

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC-CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ..+|++++.||+|+||+||+|.. .+|+.||+|+++... ....+.+.+|+.+++.++||||+++.+++......  ...
T Consensus         7 ~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~--~~~   84 (345)
T d1pmea_           7 GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIE--QMK   84 (345)
T ss_dssp             CTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTT--TCC
T ss_pred             CCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeecccc--ccc
Confidence            46799999999999999999995 579999999997543 23356788999999999999999999988653221  122


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..++ ++++.+++|.+++..+   .+++..+..++.|++.||.|||+   .+|+||||||+||++++++.+||+|||+|.
T Consensus        85 ~~~l-~~~~~~g~L~~~l~~~---~l~~~~i~~i~~qil~al~yLH~---~~iiHRDIKp~NILl~~~~~~kl~DfG~a~  157 (345)
T d1pmea_          85 DVYL-VTHLMGADLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLAR  157 (345)
T ss_dssp             CEEE-EEECCCEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             eEEE-EEeecCCchhhhhhcC---CCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCcceEEECCCCCEEEcccCcee
Confidence            3444 5566789999999764   58999999999999999999999   799999999999999999999999999997


Q ss_pred             hcccccc----cccccccccccCCCCC
Q 028725          181 LAENAEK----VGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~~----~~~~~~~~~~~aPE~~  203 (205)
                      .......    .....||+.|+|||..
T Consensus       158 ~~~~~~~~~~~~~~~~gt~~y~aPE~l  184 (345)
T d1pmea_         158 VADPDHDHTGFLTEYVATRWYRAPEIM  184 (345)
T ss_dssp             ECCGGGCBCCTTCCCCSCGGGCCGGGT
T ss_pred             eccCCCccceeeccccccceechHHHh
Confidence            6654432    3445799999999964

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=227.52  Aligned_cols=172  Identities=21%  Similarity=0.386  Sum_probs=140.9

Q ss_pred             HHhcCCCcceeeccCcceEEEEEEecC--------CcEEEEEEecccCC-cCHHHHHHHHHHHhcc-CCCccccccccee
Q 028725           21 EATNNFDTSAFMGEGSKGQMYRGRLKN--------GTFIAIRCLKMKKS-HSTRNFMHHIELISKL-RHCHLVSALGHCF   90 (205)
Q Consensus        21 ~~~~~y~~~~~lg~g~~g~V~~~~~~~--------~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~   90 (205)
                      ...++|++++.||+|+||.||+|+..+        +..||+|+++.... .....+.+|...+.++ +||||+++++++.
T Consensus        10 i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~   89 (299)
T d1fgka_          10 LPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT   89 (299)
T ss_dssp             CCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             ccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccc
Confidence            345789999999999999999998532        24799999976543 3456788888888888 7999999999997


Q ss_pred             eecccCCCCCeEEEEEeecCCCcHHHhhccCC--------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeec
Q 028725           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA--------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSN  156 (205)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~  156 (205)
                      +       ....++||||+.+|+|.+++..+.              ...+++..++.++.|++.||.|||+   .+++||
T Consensus        90 ~-------~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~---~~ivHr  159 (299)
T d1fgka_          90 Q-------DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHR  159 (299)
T ss_dssp             S-------SSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCS
T ss_pred             c-------CCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhh---CCEEee
Confidence            6       567999999999999999997543              2358999999999999999999999   799999


Q ss_pred             CCccccEEeCCCCceeEcCCCchhhccccc---ccccccccccccCCCC
Q 028725          157 NLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  202 (205)
Q Consensus       157 dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~  202 (205)
                      ||||+||+++.++.+||+|||+++......   ......++..|+|||.
T Consensus       160 DiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  208 (299)
T d1fgka_         160 DLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEA  208 (299)
T ss_dssp             CCSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHH
T ss_pred             eecccceeecCCCCeEeccchhhccccccccccccccCCCChhhhhhhH
Confidence            999999999999999999999998776544   2333588999999995

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=228.18  Aligned_cols=176  Identities=22%  Similarity=0.327  Sum_probs=147.5

Q ss_pred             HHHHHhcCCCcceeeccCcceEEEEEEec------CCcEEEEEEecccC-CcCHHHHHHHHHHHhcc-CCCcccccccce
Q 028725           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHC   89 (205)
Q Consensus        18 ~~~~~~~~y~~~~~lg~g~~g~V~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~   89 (205)
                      +|....++|++++.||+|+||.||+|.+.      +++.||+|+++... ......+.+|+.+++.+ +||||+++++++
T Consensus        17 ~~~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~   96 (311)
T d1t46a_          17 KWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGAC   96 (311)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEE
Confidence            34445689999999999999999999853      36689999997653 33455788999999999 699999999999


Q ss_pred             eeecccCCCCCeEEEEEeecCCCcHHHhhccCC----------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCce
Q 028725           90 FECYFDDSSVSRIFLIFEYVPNGTLRSWISGHA----------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGV  153 (205)
Q Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~----------------~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i  153 (205)
                      .+       ....+++|||+++|+|.+++....                ...+++..+..++.|++.||.|||+   +++
T Consensus        97 ~~-------~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~---~~i  166 (311)
T d1t46a_          97 TI-------GGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNC  166 (311)
T ss_dssp             CS-------SSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH---TTC
T ss_pred             ee-------CCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCe
Confidence            76       567899999999999999986432                1358899999999999999999999   799


Q ss_pred             eecCCccccEEeCCCCceeEcCCCchhhccccc---ccccccccccccCCCCC
Q 028725          154 FSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       154 ~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~aPE~~  203 (205)
                      +||||||+||+++.++.++++|||+++......   ......+|+.|+|||..
T Consensus       167 vHrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  219 (311)
T d1t46a_         167 IHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESI  219 (311)
T ss_dssp             CCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHH
T ss_pred             eecccccccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHh
Confidence            999999999999999999999999998766533   22335889999999953

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=223.50  Aligned_cols=175  Identities=16%  Similarity=0.279  Sum_probs=138.9

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEeccc--CCcCHHHHHHHHHHHhccCCCcccccccceeeecccC-CC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK--KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD-SS   98 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~-~~   98 (205)
                      .++|++.+.||+|+||+||+|.. .+|+.||+|++...  .......+.+|+.+++.++|||++++.+.+....... ..
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            58999999999999999999996 47999999998655  3445677889999999999999999998876532211 22


Q ss_pred             CCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCc
Q 028725           99 VSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  178 (205)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~  178 (205)
                      ....+++||++.++.+.......  ..+++..+..++.|++.||.|||+   .+|+||||||+||++++++.++|+|||+
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~~~~--~~~~~~~~~~i~~qil~~l~~lH~---~~ivHrDlKp~NILl~~~~~~kl~dfg~  163 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLSNVL--VKFTLSEIKRVMQMLLNGLYYIHR---NKILHRDMKAANVLITRDGVLKLADFGL  163 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHTCTT--CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCTT
T ss_pred             CceEEEEEeccCCCccchhhhcc--cccccHHHHHHHHHHHHHHHHhcc---CCEEecCcCchheeecCCCcEEeeecce
Confidence            45689999999876666544433  478889999999999999999999   7999999999999999999999999999


Q ss_pred             hhhccccc-----ccccccccccccCCCC
Q 028725          179 PLLAENAE-----KVGHVTPYSGSINPTN  202 (205)
Q Consensus       179 a~~~~~~~-----~~~~~~~~~~~~aPE~  202 (205)
                      ++......     ......||.+|+|||.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~  192 (318)
T d3blha1         164 ARAFSLAKNSQPNRYTNRVVTLWYRPPEL  192 (318)
T ss_dssp             CEECCC-----CCCCCSCCSCGGGCCHHH
T ss_pred             eeecccccccccccccceecCHHHhhHHH
Confidence            97555322     2233479999999995

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=226.51  Aligned_cols=170  Identities=14%  Similarity=0.223  Sum_probs=137.6

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|++.+.||+|+||.||+|.. .+|+.||+|+++....  ...+.+.+|+.+++.++||||+++++++...... ...
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~-~~~   95 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETL-DDF   95 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSST-TTC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccc-ccc
Confidence            57899999999999999999995 4699999999975432  3356788999999999999999999988652211 123


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ..+++||||+ +.+|..++...   .+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.++++|||+|
T Consensus        96 ~~~~lv~e~~-~~~l~~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~---~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a  168 (346)
T d1cm8a_          96 TDFYLVMPFM-GTDLGKLMKHE---KLGEDRIQFLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLA  168 (346)
T ss_dssp             CCCEEEEECC-SEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             ceEEEEEecc-cccHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHh---CCCcccccCcchhhcccccccccccccce
Confidence            4579999999 56888877653   69999999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTN  202 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~  202 (205)
                      +.....  .....+|..|+|||.
T Consensus       169 ~~~~~~--~~~~~~t~~y~aPE~  189 (346)
T d1cm8a_         169 RQADSE--MTGYVVTRWYRAPEV  189 (346)
T ss_dssp             EECCSS--CCSSCSCGGGCCTHH
T ss_pred             eccCCc--cccccccccccCHHH
Confidence            876543  344689999999995

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-34  Score=218.29  Aligned_cols=168  Identities=16%  Similarity=0.258  Sum_probs=145.7

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCC
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      ++|++++.||+|+||+||+|.. .+++.||+|+++...  ......+.+|+.+++.++||||+++.+.+.+       ..
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~-------~~   74 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHS-------DK   74 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEC-------SS
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeecccccc-------cc
Confidence            6899999999999999999995 568899999997653  2345778899999999999999999998876       67


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                      ..+++++++.++++..++....  .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||.|+
T Consensus        75 ~~~iv~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~q~~~aL~~lH~---~~IvHrDiKP~NIli~~~~~~kl~DFG~a~  149 (292)
T d1unla_          75 KLTLVFEFCDQDLKKYFDSCNG--DLDPEIVKSFLFQLLKGLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGLAR  149 (292)
T ss_dssp             EEEEEEECCSEEHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             ceeEEeeecccccccccccccc--ccchhHHHHHHHHHHHHHHHhhc---CCEeeecccCcccccccCCceeeeecchhh
Confidence            8999999999999888877654  78899999999999999999999   799999999999999999999999999998


Q ss_pred             hccccc-ccccccccccccCCCCC
Q 028725          181 LAENAE-KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~~aPE~~  203 (205)
                      ...... ......++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~pe~~  173 (292)
T d1unla_         150 AFGIPVRCYSAEVVTLWYRPPDVL  173 (292)
T ss_dssp             ECCSCCSCCCSCCSCGGGCCHHHH
T ss_pred             cccCCCccceeeccccchhhhhHh
Confidence            776543 33445777889998853

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=1.1e-33  Score=216.22  Aligned_cols=167  Identities=11%  Similarity=0.154  Sum_probs=138.8

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccCCcCHHHHHHHHHHHhccCC-CcccccccceeeecccCCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRH-CHLVSALGHCFECYFDDSSVS  100 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~-~~i~~~~~~~~~~~~~~~~~~  100 (205)
                      .++|++++.||+|+||.||+|... +|+.||+|+++...  ....+.+|++.++.++| +|++.+.+.+..       ..
T Consensus         4 g~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~-------~~   74 (293)
T d1csna_           4 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQE-------GL   74 (293)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEE-------TT
T ss_pred             CCceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcccc--CcHHHHHHHHHHHHhcCCCCCCEEEEEeec-------CC
Confidence            478999999999999999999954 68999999986443  33456778888888875 888888887765       67


Q ss_pred             eEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC-----CCceeEcC
Q 028725          101 RIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-----NLVAKISS  175 (205)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~-----~~~~~l~D  175 (205)
                      ..++|||++ +++|.+++.... ..++......++.|++.||.|||+   .+|+||||||+||+++.     ++.++|+|
T Consensus        75 ~~~~vme~~-~~~l~~~~~~~~-~~~~~~~~~~i~~q~~~~l~~lH~---~giiHrDiKp~Nili~~~~~~~~~~vkl~D  149 (293)
T d1csna_          75 HNVLVIDLL-GPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVVD  149 (293)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECCSSSTTTTCEEECC
T ss_pred             ccEEEEEec-CCCHHHHHHhhc-cchhhHHHHHHHHHHHHHHHHHHH---CCceeccCCccceeecCcccccCCceEEcc
Confidence            889999999 679999887543 468999999999999999999999   79999999999999974     57899999


Q ss_pred             CCchhhccccc--------ccccccccccccCCCCC
Q 028725          176 YNLPLLAENAE--------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       176 fg~a~~~~~~~--------~~~~~~~~~~~~aPE~~  203 (205)
                      ||+|+......        ......||+.|||||..
T Consensus       150 FG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~  185 (293)
T d1csna_         150 FGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTH  185 (293)
T ss_dssp             CTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHH
T ss_pred             cceeEEcccCccccceeecccCceEEchhhcCHHHh
Confidence            99998765432        22335799999999964

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-34  Score=222.02  Aligned_cols=172  Identities=16%  Similarity=0.185  Sum_probs=131.4

Q ss_pred             hcCCCcceeeccCcceEEEEEEec-CCcEEEEEEecccC--CcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|++++.||+|+||+||+|... +|+.||+|++....  ......+.+|+.++++++||||+++.+++...... ...
T Consensus        16 ~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~-~~~   94 (355)
T d2b1pa1          16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTL-EEF   94 (355)
T ss_dssp             ETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCST-TTC
T ss_pred             cCCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEeccccc-ccC
Confidence            478999999999999999999964 69999999997553  23345678999999999999999999988642211 234


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ..+|+||||+.++.+. .+.    ..+++..++.++.|++.||.|||+   .||+||||||+||+++.++.++++|||++
T Consensus        95 ~~~~iv~Ey~~~~l~~-~~~----~~~~~~~i~~~~~qil~gl~~LH~---~giiHrDlKP~Nil~~~~~~~kl~df~~~  166 (355)
T d2b1pa1          95 QDVYLVMELMDANLCQ-VIQ----MELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLA  166 (355)
T ss_dssp             CEEEEEEECCSEEHHH-HHT----SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCCCC-
T ss_pred             ceeEEEEeccchHHHH-hhh----cCCCHHHHHHHHHHHHHHHHHhhh---cccccccCCccccccccccceeeechhhh
Confidence            6899999999765444 443    258899999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      +............+|..|+|||..
T Consensus       167 ~~~~~~~~~~~~~~t~~y~aPE~l  190 (355)
T d2b1pa1         167 RTAGTSFMMTPYVVTRYYRAPEVI  190 (355)
T ss_dssp             --------------CCTTCCHHHH
T ss_pred             hccccccccccccccccccChhhh
Confidence            988887777778999999999964

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-34  Score=219.25  Aligned_cols=169  Identities=20%  Similarity=0.299  Sum_probs=145.3

Q ss_pred             hcCCCcceeeccCcceEEEEEEec----CCcEEEEEEecccC----CcCHHHHHHHHHHHhccCC-Ccccccccceeeec
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK----SHSTRNFMHHIELISKLRH-CHLVSALGHCFECY   93 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~~----~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~~-~~i~~~~~~~~~~~   93 (205)
                      .++|++++.||+|+||+||+|...    +|+.||+|++++..    ....+.+.+|+.++++++| |||+++.+.+.+  
T Consensus        23 l~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~--  100 (322)
T d1vzoa_          23 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT--  100 (322)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEE--
T ss_pred             hhceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeecc--
Confidence            377999999999999999999852    47899999986542    2345678889999999977 899999998876  


Q ss_pred             ccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeE
Q 028725           94 FDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  173 (205)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l  173 (205)
                           ....++++||+.+++|.+++....  .+++.....++.|++.||.|+|+   .+++||||||+||+++.++.++|
T Consensus       101 -----~~~~~~v~e~~~~~~L~~~i~~~~--~~~e~~~~~~~~Qi~~al~~lH~---~~ivHrDiKp~Nill~~~~~vkL  170 (322)
T d1vzoa_         101 -----ETKLHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVL  170 (322)
T ss_dssp             -----TTEEEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEE
T ss_pred             -----CCceeeeeecccccHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHhhc---CCEEeccCCccceeecCCCCEEE
Confidence                 678999999999999999998654  67788899999999999999999   79999999999999999999999


Q ss_pred             cCCCchhhccccc--ccccccccccccCCCCC
Q 028725          174 SSYNLPLLAENAE--KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       174 ~Dfg~a~~~~~~~--~~~~~~~~~~~~aPE~~  203 (205)
                      +|||+|+......  ......+++.|+|||..
T Consensus       171 ~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~  202 (322)
T d1vzoa_         171 TDFGLSKEFVADETERAYDFCGTIEYMAPDIV  202 (322)
T ss_dssp             SCSSEEEECCGGGGGGGCGGGSCCTTCCHHHH
T ss_pred             eeccchhhhcccccccccccccccccchhHHh
Confidence            9999997654433  34556899999999863

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.8e-33  Score=212.08  Aligned_cols=168  Identities=14%  Similarity=0.194  Sum_probs=135.2

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCe
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~  101 (205)
                      .++|++.+.||+|+||.||+|.+ .+|+.||+|++..+.  ....+..|+++++.++|++++..+..+..      ....
T Consensus         6 g~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~E~~i~~~l~~~~~i~~~~~~~~------~~~~   77 (299)
T d1ckia_           6 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGA------EGDY   77 (299)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCT--TSCCHHHHHHHHHHSTTSTTCCCEEEEEE------ETTE
T ss_pred             CCEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhc--cCHHHHHHHHHHHHccCCCcccEEEEEEe------cCCE
Confidence            46799999999999999999995 468999999987543  23457789999999998887766655543      1567


Q ss_pred             EEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC---CCceeEcCCCc
Q 028725          102 IFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---NLVAKISSYNL  178 (205)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~---~~~~~l~Dfg~  178 (205)
                      .++|||++. +++.+.+.... ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.   +..++|+|||+
T Consensus        78 ~~ivme~~~-~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~---~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~  152 (299)
T d1ckia_          78 NVMVMELLG-PSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGL  152 (299)
T ss_dssp             EEEEEECCC-CBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECCGGGTTCEEECCCSS
T ss_pred             EEEEEEEcC-Cchhhhhhhcc-CCCcHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHhhccccccCCCceeeeeccCc
Confidence            899999995 46666655333 478999999999999999999999   79999999999999863   45799999999


Q ss_pred             hhhccccc--------ccccccccccccCCCCC
Q 028725          179 PLLAENAE--------KVGHVTPYSGSINPTNS  203 (205)
Q Consensus       179 a~~~~~~~--------~~~~~~~~~~~~aPE~~  203 (205)
                      |+......        ......||+.|+|||..
T Consensus       153 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  185 (299)
T d1ckia_         153 AKKYRDARTHQHIPYRENKNLTGTARYASINTH  185 (299)
T ss_dssp             CEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHH
T ss_pred             ceeccccccccceeccccCCcCCCccccCHHHH
Confidence            98766532        22345899999999953

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-33  Score=220.43  Aligned_cols=171  Identities=13%  Similarity=0.191  Sum_probs=138.9

Q ss_pred             hcCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCC--cCHHHHHHHHHHHhccCCCcccccccceeeecccCCCC
Q 028725           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (205)
Q Consensus        23 ~~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   99 (205)
                      .++|++++.||+|+||+||+|.. .+|+.||+|++++...  ...+.+.+|+.+++.++|||++++.+++......  ..
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~--~~   94 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSL--EE   94 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSST--TT
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeecccc--cc
Confidence            57899999999999999999995 5799999999975532  2345678999999999999999999887542111  12


Q ss_pred             CeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCCceeEcCCCch
Q 028725          100 SRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  179 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a  179 (205)
                      ...+++++++.+++|.+++..+   .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++++|||++
T Consensus        95 ~~~~~i~~~~~gg~L~~~~~~~---~l~e~~~~~i~~qil~aL~~LH~---~giiHrDiKp~NILi~~~~~~kl~dfg~a  168 (348)
T d2gfsa1          95 FNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLA  168 (348)
T ss_dssp             CCCCEEEEECCSEEHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCC---
T ss_pred             CceEEEEEeecCCchhhhcccc---cccHHHHHHHHHHHHHHHHHHHh---CCCcccccCCccccccccccccccccchh
Confidence            3345667778899999998653   59999999999999999999999   79999999999999999999999999999


Q ss_pred             hhcccccccccccccccccCCCCC
Q 028725          180 LLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                      ......  .....||..|+|||..
T Consensus       169 ~~~~~~--~~~~~g~~~y~apE~~  190 (348)
T d2gfsa1         169 RHTDDE--MTGYVATRWYRAPEIM  190 (348)
T ss_dssp             -CCTGG--GSSSCHHHHTSCHHHH
T ss_pred             cccCcc--cccccccccccCchhh
Confidence            766543  3446899999999963

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.4e-28  Score=189.38  Aligned_cols=170  Identities=14%  Similarity=0.192  Sum_probs=129.8

Q ss_pred             cCCCcceeeccCcceEEEEEEe-cCCcEEEEEEecccCCcCHHHHHHHHHHHhccC-----------CCcccccccceee
Q 028725           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-----------HCHLVSALGHCFE   91 (205)
Q Consensus        24 ~~y~~~~~lg~g~~g~V~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-----------~~~i~~~~~~~~~   91 (205)
                      ++|++++.||+|+||+||+|+. .+|+.||+|++++.. ...+.+.+|+.+++.+.           |+||+++++.+..
T Consensus        13 ~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~-~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~   91 (362)
T d1q8ya_          13 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   91 (362)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             CcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc-cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeee
Confidence            3599999999999999999995 579999999997442 23456678888887775           4678888877654


Q ss_pred             ecccCCCCCeEEEEEeecCCC-cHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCCCC-
Q 028725           92 CYFDDSSVSRIFLIFEYVPNG-TLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-  169 (205)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~~~-  169 (205)
                      .     .....+.++++...+ .............+++..+..++.|++.||.|||+.  .+|+||||||+||+++.++ 
T Consensus        92 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~--~~IvHrDlKp~NIll~~~~~  164 (362)
T d1q8ya_          92 K-----GPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRR--CGIIHTDIKPENVLMEIVDS  164 (362)
T ss_dssp             E-----ETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHT--TCEECSCCSGGGEEEEEEET
T ss_pred             c-----cccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhh--cCcccccCChhHeeeeccCc
Confidence            1     234556666665443 333333334435788999999999999999999974  6899999999999998654 


Q ss_pred             -----ceeEcCCCchhhcccccccccccccccccCCCCC
Q 028725          170 -----VAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  203 (205)
Q Consensus       170 -----~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~aPE~~  203 (205)
                           .++++|||.|.....  ......+|..|+|||..
T Consensus       165 ~~~~~~~kl~dfg~s~~~~~--~~~~~~gt~~y~aPE~~  201 (362)
T d1q8ya_         165 PENLIQIKIADLGNACWYDE--HYTNSIQTREYRSPEVL  201 (362)
T ss_dssp             TTTEEEEEECCCTTCEETTB--CCCSCCSCGGGCCHHHH
T ss_pred             ccccceeeEeeccccccccc--ccccccccccccChhhc
Confidence                 489999999976554  33446899999999953

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=2.4e-25  Score=159.54  Aligned_cols=135  Identities=10%  Similarity=0.101  Sum_probs=102.5

Q ss_pred             CCcceeeccCcceEEEEEEecCCcEEEEEEecccCCc-------------C-----HHHHHHHHHHHhccCCCccccccc
Q 028725           26 FDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH-------------S-----TRNFMHHIELISKLRHCHLVSALG   87 (205)
Q Consensus        26 y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~-------------~-----~~~~~~e~~~l~~l~~~~i~~~~~   87 (205)
                      +.+++.||+|+||+||+|...+|+.||+|+++.....             .     ......|...+.++.|++++..++
T Consensus         2 ~~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~   81 (191)
T d1zara2           2 DAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYA   81 (191)
T ss_dssp             SEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEE
T ss_pred             chhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEE
Confidence            3578999999999999999888999999987532110             0     122345778888888988887654


Q ss_pred             ceeeecccCCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCceeecCCccccEEeCC
Q 028725           88 HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ  167 (205)
Q Consensus        88 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~~i~h~dlkp~nilv~~  167 (205)
                      ..           ..+++||++++..+.++         +......++.|++.++.|||+   .+|+||||||+||++++
T Consensus        82 ~~-----------~~~lvme~~~~~~~~~l---------~~~~~~~i~~ql~~~l~~lH~---~giiHrDiKP~NILv~~  138 (191)
T d1zara2          82 WE-----------GNAVLMELIDAKELYRV---------RVENPDEVLDMILEEVAKFYH---RGIVHGDLSQYNVLVSE  138 (191)
T ss_dssp             EE-----------TTEEEEECCCCEEGGGC---------CCSCHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEET
T ss_pred             ec-----------CCEEEEEeeccccccch---------hhHHHHHHHHHHHHHHHHHhh---CCEEEccCChhheeeeC
Confidence            32           13689999988655432         223345688999999999999   79999999999999986


Q ss_pred             CCceeEcCCCchhhccc
Q 028725          168 NLVAKISSYNLPLLAEN  184 (205)
Q Consensus       168 ~~~~~l~Dfg~a~~~~~  184 (205)
                      + .++|+|||+|.....
T Consensus       139 ~-~~~liDFG~a~~~~~  154 (191)
T d1zara2         139 E-GIWIIDFPQSVEVGE  154 (191)
T ss_dssp             T-EEEECCCTTCEETTS
T ss_pred             C-CEEEEECCCcccCCC
Confidence            5 588999999876553

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.96  E-value=6.7e-09  Score=76.13  Aligned_cols=152  Identities=10%  Similarity=-0.016  Sum_probs=99.0

Q ss_pred             HHHHHHhcCCCcceeeccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccC-CCcccccccceeeeccc
Q 028725           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFD   95 (205)
Q Consensus        17 ~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-~~~i~~~~~~~~~~~~~   95 (205)
                      .++......|+..+..+.++.+.||+... +++.+++|+...........+.+|...+..+. +--+.+++.....    
T Consensus         7 ~~l~~~~~~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~----   81 (263)
T d1j7la_           7 PELKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERH----   81 (263)
T ss_dssp             HHHHHHHTTSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEE----
T ss_pred             HHHHHhhhceEEEEcCCCCCCCcEEEEEe-CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEec----
Confidence            46667778888877766566678998864 46678888887655555556777888777664 2223455544433    


Q ss_pred             CCCCCeEEEEEeecCCCcHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhcCC--------------------------
Q 028725           96 DSSVSRIFLIFEYVPNGTLRSWISGHAWQSLTWTQRISAAIGVARGIQFLHTGI--------------------------  149 (205)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~--------------------------  149 (205)
                         .+..++||++++|.++.+.....    ...   ..++.++...+..||+..                          
T Consensus        82 ---~~~~~lv~~~l~G~~~~~~~~~~----~~~---~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (263)
T d1j7la_          82 ---DGWSNLLMSEADGVLCSEEYEDE----QSP---EKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLA  151 (263)
T ss_dssp             ---TTEEEEEEECCSSEEHHHHTTTC----SCH---HHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCS
T ss_pred             ---CCceEEEEEeccccccccccccc----ccH---HHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhh
Confidence               46789999999998876543221    111   112333333344444210                          


Q ss_pred             ------------------------------CCceeecCCccccEEeCCCCceeEcCCCchhhcc
Q 028725          150 ------------------------------VPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  183 (205)
Q Consensus       150 ------------------------------~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~~~~  183 (205)
                                                    ...++|+|+.|.||++++++.+.|+||+.+....
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~g~  215 (263)
T d1j7la_         152 DVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRAD  215 (263)
T ss_dssp             CCCGGGGSTTCSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEEEE
T ss_pred             hhhhhcccccccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhcccCC
Confidence                                          0237899999999999987777899999886544

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=98.45  E-value=1.4e-06  Score=63.06  Aligned_cols=74  Identities=15%  Similarity=0.159  Sum_probs=47.6

Q ss_pred             eccCc-ceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCc--ccccccceeeecccCCCCCeEEEEEee
Q 028725           32 MGEGS-KGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH--LVSALGHCFECYFDDSSVSRIFLIFEY  108 (205)
Q Consensus        32 lg~g~-~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~--i~~~~~~~~~~~~~~~~~~~~~lv~e~  108 (205)
                      +..|. -+.||+....++..+++|.....   ....+..|...++.+...+  +++++....+       .+..+++|++
T Consensus        18 ~~~G~s~~~v~r~~~~~~~~~vlK~~~~~---~~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~-------~~~~~~v~~~   87 (255)
T d1nd4a_          18 QTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTE-------AGRDWLLLGE   87 (255)
T ss_dssp             CSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEEC-------SSCEEEEEEC
T ss_pred             cCCcccCCeEEEEEeCCCCEEEEEeCCcc---CHhHHHHHHHHHHHHHhcCCCCCceeeeccc-------ccceEEEEEe
Confidence            34444 36899998777778888987533   3334566777776664333  3445544433       4578999999


Q ss_pred             cCCCcHH
Q 028725          109 VPNGTLR  115 (205)
Q Consensus       109 ~~~~~L~  115 (205)
                      ++|.++.
T Consensus        88 i~G~~~~   94 (255)
T d1nd4a_          88 VPGQDLL   94 (255)
T ss_dssp             CSSEETT
T ss_pred             eeccccc
Confidence            9886553

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=98.08  E-value=3e-05  Score=59.76  Aligned_cols=76  Identities=7%  Similarity=-0.017  Sum_probs=45.5

Q ss_pred             ceeeccCcceEEEEEEec-CCcEEEEEEeccc----C---CcCHHHHHHHHHHHhccC-C-C-cccccccceeeecccCC
Q 028725           29 SAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK----K---SHSTRNFMHHIELISKLR-H-C-HLVSALGHCFECYFDDS   97 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~-~~~~vaiK~~~~~----~---~~~~~~~~~e~~~l~~l~-~-~-~i~~~~~~~~~~~~~~~   97 (205)
                      .+.+|.|....||+.... +++.+++|.-...    .   +........|...++.+. + | .+++++...        
T Consensus        31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~d--------  102 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSD--------  102 (392)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEE--------
T ss_pred             EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEEc--------
Confidence            457899999999999854 4778999865321    1   223445566787777653 2 2 233443322        


Q ss_pred             CCCeEEEEEeecCCCc
Q 028725           98 SVSRIFLIFEYVPNGT  113 (205)
Q Consensus        98 ~~~~~~lv~e~~~~~~  113 (205)
                       ....+++||++++..
T Consensus       103 -~~~~~lvmE~L~~~~  117 (392)
T d2pula1         103 -TEMAVTVMEDLSHLK  117 (392)
T ss_dssp             -TTTTEEEECCCTTSE
T ss_pred             -CCCCEEEEeccCCcc
Confidence             234578999997644

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=1.5e-05  Score=59.91  Aligned_cols=142  Identities=7%  Similarity=0.054  Sum_probs=77.0

Q ss_pred             ceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCCCcccccccceeeecccCCCCCeEEEEEeecCCCcHH-
Q 028725           37 KGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR-  115 (205)
Q Consensus        37 ~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~-  115 (205)
                      --.||.+...+|..+++|+.... ......+..|...+..+...++.-...............+..+.++++++|..+. 
T Consensus        35 EN~vy~v~~~dg~~~VlK~~rp~-~~s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G~~~~~  113 (325)
T d1zyla1          35 ENRVYQFQDEDRRRFVVKFYRPE-RWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQFEA  113 (325)
T ss_dssp             SSEEEEECCTTCCCEEEEEECTT-TSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCEECCS
T ss_pred             cceeEEEEcCCCCEEEEEEeCCC-CCCHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCCcCCCC
Confidence            35899999888999999998643 2345567778887777653333211111111000011256778899988763221 


Q ss_pred             ----Hh------h----c---cC---CCCCCCH----------------------HHHHHHHHHHHHHHHHh-hcCCCCc
Q 028725          116 ----SW------I----S---GH---AWQSLTW----------------------TQRISAAIGVARGIQFL-HTGIVPG  152 (205)
Q Consensus       116 ----~~------~----~---~~---~~~~~~~----------------------~~~~~i~~~i~~~l~~l-h~~~~~~  152 (205)
                          ++      +    .   ..   .+...+.                      ......+.++...+.-. ......+
T Consensus       114 ~~~~~~~~lG~~LA~lH~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~  193 (325)
T d1zyla1         114 DNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHWREDFTVL  193 (325)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHCCSCSCCE
T ss_pred             CCHHHHHHHHHHHHHHHhhcccCCccccCCCCHHHHhhhhHHHHHHcCcCCHHHHHHHHHHHHHHHHHHHHhccccCCce
Confidence                11      0    0   00   0001111                      11122233333333222 2333467


Q ss_pred             eeecCCccccEEeCCCCceeEcCCCchhh
Q 028725          153 VFSNNLKITDILLDQNLVAKISSYNLPLL  181 (205)
Q Consensus       153 i~h~dlkp~nilv~~~~~~~l~Dfg~a~~  181 (205)
                      ++|+|+.+.||+++.+  ..++||+.+..
T Consensus       194 liHgDlh~~NvL~~~~--~~~IDFdd~~~  220 (325)
T d1zyla1         194 RLHGDCHAGNILWRDG--PMFVDLDDARN  220 (325)
T ss_dssp             ECCSSCSGGGEEESSS--EEECCCTTCCE
T ss_pred             eecCCCCcccEEEeCC--ceEEechhccc
Confidence            8999999999999743  45899998864

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.91  E-value=7.3e-05  Score=55.56  Aligned_cols=159  Identities=9%  Similarity=0.116  Sum_probs=80.9

Q ss_pred             cCHHHHHHHhcCCCcceee-----ccCcceEEEEEEecCCcEEEEEEecccCCcCHHHHHHHHHHHhccCC-----Cccc
Q 028725           14 FSLEELEEATNNFDTSAFM-----GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRH-----CHLV   83 (205)
Q Consensus        14 ~~~~~~~~~~~~y~~~~~l-----g~g~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~-----~~i~   83 (205)
                      .+.+++.....+|.+++..     ..|.--+.|.....+| .+++|++....  ....+..|+.++..+..     |..+
T Consensus         3 ls~~el~~~l~~Y~lg~~~~~~~i~~G~~N~ny~v~t~~g-~yVLri~~~~~--~~~~l~~~~~~l~~L~~~g~pvp~pi   79 (316)
T d2ppqa1           3 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPLPL   79 (316)
T ss_dssp             CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred             CCHHHHHHHHHhCCCCCceEeecCCCCcccCeEEEEECCC-cEEEEEcCCCC--CHHHHHHHHHHHHhhhhccccccccc
Confidence            5678888888999876554     3555577898886544 58999986432  22333445555555432     2222


Q ss_pred             cc-ccceeeecccCCCCCeEEEEEeecCCCcHHH-----h------hc------cC---C-CCCCCH-------------
Q 028725           84 SA-LGHCFECYFDDSSVSRIFLIFEYVPNGTLRS-----W------IS------GH---A-WQSLTW-------------  128 (205)
Q Consensus        84 ~~-~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~-----~------~~------~~---~-~~~~~~-------------  128 (205)
                      .. -|....     ........++.+..+.....     .      +.      ..   . ......             
T Consensus        80 ~~~~g~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (316)
T d2ppqa1          80 PRKDGELLG-----ELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEER  154 (316)
T ss_dssp             CBTTCCSCE-----EETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGG
T ss_pred             eecCCCcce-----eeecccceeeeecccccccccchhHHHHHHHHHHhhhhhhhhcccccccccchhhcchhhhHHHHh
Confidence            11 111111     11345556666665432211     0      00      00   0 000000             


Q ss_pred             -----HHHHHHHHHHHHHHHHh-hcCCCCceeecCCccccEEeCCCCceeEcCCCchh
Q 028725          129 -----TQRISAAIGVARGIQFL-HTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  180 (205)
Q Consensus       129 -----~~~~~i~~~i~~~l~~l-h~~~~~~i~h~dlkp~nilv~~~~~~~l~Dfg~a~  180 (205)
                           ......+......+.-. -.+...|++|+|+.+.|++++.+...-|+||+.+.
T Consensus       155 ~~~~~~~~~~~l~~~~~~~~~~~~~~L~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         155 ADEVEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             GGGTSTTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             hhhcchhHHHHHHHHHHhhhccCccccccccccCCcchhhhhcccccceeEecccccc
Confidence                 00111111222222221 12334689999999999999988888999999884

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.50  E-value=0.00051  Score=52.60  Aligned_cols=73  Identities=16%  Similarity=0.228  Sum_probs=47.8

Q ss_pred             ceeeccCcceEEEEEEecC--------CcEEEEEEecccCCcCHHHHHHHHHHHhccCCCccc-ccccceeeecccCCCC
Q 028725           29 SAFMGEGSKGQMYRGRLKN--------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV-SALGHCFECYFDDSSV   99 (205)
Q Consensus        29 ~~~lg~g~~g~V~~~~~~~--------~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~~~~i~-~~~~~~~~~~~~~~~~   99 (205)
                      .+.|+.|-.-.+|++...+        .+.+++++.- . ........+|..+++.+.-.++. ++++.+.         
T Consensus        47 v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g-~-~~~~idr~~E~~i~~~ls~~gl~Pkll~~~~---------  115 (395)
T d1nw1a_          47 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF-N-PETESHLVAESVIFTLLSERHLGPKLYGIFS---------  115 (395)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC-S-CCCHHHHHHHHHHHHHHHHTTSSSCEEEEET---------
T ss_pred             EEEcCCccccceEEEEeCCCCccccCCCCcEEEEecC-C-cchhhHHHHHHHHHHHHHhCCCCCeEEEEcC---------
Confidence            3567778888999988643        3567777775 2 23344567888888887544544 5555542         


Q ss_pred             CeEEEEEeecCCCcH
Q 028725          100 SRIFLIFEYVPNGTL  114 (205)
Q Consensus       100 ~~~~lv~e~~~~~~L  114 (205)
                      +  +.|+||++|.++
T Consensus       116 ~--g~I~efi~g~~l  128 (395)
T d1nw1a_         116 G--GRLEEYIPSRPL  128 (395)
T ss_dssp             T--EEEECCCCEEEC
T ss_pred             C--ceEEEEeccccC
Confidence            1  578899877443