BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028726
         (205 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O67166|PROA_AQUAE Gamma-glutamyl phosphate reductase OS=Aquifex aeolicus (strain VF5)
           GN=proA PE=3 SV=2
          Length = 435

 Score = 34.3 bits (77), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 9/90 (10%)

Query: 50  RGLLCRSFALKNE----VIETADGAQQVEEEEEKKEMEKPRETLLY-SIAPLPLLFDAAL 104
           R L     ++KNE    V E  D  +   +EE +K++EK +E  L  ++    +L D  +
Sbjct: 16  RELTSLKTSVKNETLLKVAELIDKNRDYIKEENRKDVEKAKEMGLRPAVVDRLVLNDKRI 75

Query: 105 PGA----GTVRALFGPFVELVKSWNLPDWL 130
            G       V +L  P  E++K WNLP+ L
Sbjct: 76  DGMVKVLKDVASLPDPVGEIIKMWNLPNGL 105


>sp|Q9UZK7|IF2P_PYRAB Probable translation initiation factor IF-2 OS=Pyrococcus abyssi
           (strain GE5 / Orsay) GN=infB PE=3 SV=1
          Length = 992

 Score = 32.0 bits (71), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 18/24 (75%)

Query: 149 YGTYLGFCIRYSDDMEEKAKAKDL 172
           YG  LGF ++ ++D EE AKAKD+
Sbjct: 802 YGVILGFNVKVNEDAEEVAKAKDV 825


>sp|Q9SDL7|HMT1_ARATH Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana GN=HMT-1
           PE=1 SV=1
          Length = 326

 Score = 31.2 bits (69), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 134 GHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKA---KAKDLHPKLL 177
           GH  N A+V  ++G YG YL     YS    E     K KD H + L
Sbjct: 119 GHSYNRALVAASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRL 165


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.138    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,502,609
Number of Sequences: 539616
Number of extensions: 3386734
Number of successful extensions: 12883
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 12879
Number of HSP's gapped (non-prelim): 13
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)