Query 028726
Match_columns 205
No_of_seqs 76 out of 78
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 16:02:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13301 DUF4079: Protein of u 99.8 3.2E-19 7E-24 147.3 5.2 74 132-205 3-115 (175)
2 PF03188 Cytochrom_B561: Eukar 89.5 0.86 1.9E-05 34.3 4.9 71 126-200 29-99 (137)
3 PF04238 DUF420: Protein of un 85.8 1.6 3.5E-05 35.2 4.8 53 133-197 79-131 (133)
4 PF02447 GntP_permease: GntP f 82.3 1.5 3.3E-05 41.3 3.7 61 129-194 258-320 (441)
5 PRK13681 hypothetical protein; 81.5 0.7 1.5E-05 31.0 0.9 17 177-193 8-24 (35)
6 cd08554 Cyt_b561 Eukaryotic cy 81.3 4.8 0.0001 30.5 5.5 69 128-200 32-100 (131)
7 cd08760 Cyt_b561_FRRS1_like Eu 79.9 2.7 5.9E-05 33.9 3.9 64 126-194 63-126 (191)
8 cd08761 Cyt_b561_CYB561D2_like 79.2 6.1 0.00013 32.0 5.7 61 132-196 58-118 (183)
9 PF03188 Cytochrom_B561: Eukar 78.3 4 8.6E-05 30.7 4.2 66 135-205 2-70 (137)
10 COG2322 Predicted membrane pro 73.0 4.5 9.7E-05 35.1 3.6 54 132-197 119-172 (177)
11 PF13703 PepSY_TM_2: PepSY-ass 72.2 7.8 0.00017 28.1 4.2 53 139-192 23-83 (88)
12 PF03203 MerC: MerC mercury re 70.3 9.8 0.00021 29.2 4.6 24 132-156 37-60 (116)
13 smart00665 B561 Cytochrome b-5 68.1 16 0.00034 27.8 5.3 61 134-198 36-96 (129)
14 PF11381 DUF3185: Protein of u 60.3 9 0.00019 27.7 2.5 27 140-166 4-30 (59)
15 cd03496 SQR_TypeC_CybS SQR cat 55.4 7.7 0.00017 30.1 1.6 64 134-200 30-93 (104)
16 KOG1563 Mitochondrial protein 51.5 7.1 0.00015 36.1 1.0 21 140-160 60-81 (288)
17 cd08554 Cyt_b561 Eukaryotic cy 51.5 43 0.00093 25.4 5.1 67 134-204 4-70 (131)
18 PRK10472 low affinity gluconat 48.9 9.4 0.0002 36.3 1.4 58 131-193 261-320 (445)
19 PF06724 DUF1206: Domain of Un 48.7 31 0.00068 24.2 3.7 55 139-193 7-62 (73)
20 PRK10034 fructuronate transpor 48.2 11 0.00024 35.8 1.7 61 129-194 258-320 (447)
21 smart00665 B561 Cytochrome b-5 48.1 40 0.00087 25.6 4.5 38 168-205 32-69 (129)
22 PF11377 DUF3180: Protein of u 47.4 16 0.00036 29.4 2.4 26 136-161 30-55 (138)
23 PF08611 DUF1774: Fungal prote 42.6 35 0.00076 27.1 3.5 29 132-160 51-79 (97)
24 PF11241 DUF3043: Protein of u 38.6 31 0.00068 29.5 2.9 51 129-184 99-150 (170)
25 PF14007 YtpI: YtpI-like prote 37.8 40 0.00087 26.1 3.1 44 142-186 5-48 (89)
26 PF11027 DUF2615: Protein of u 37.4 27 0.00059 27.8 2.2 15 137-151 58-72 (103)
27 PRK13685 hypothetical protein; 36.8 43 0.00094 29.4 3.6 17 132-149 5-21 (326)
28 PF08285 DPM3: Dolichol-phosph 36.6 77 0.0017 24.4 4.4 46 120-166 22-69 (91)
29 COG2610 GntT H+/gluconate symp 36.5 41 0.00088 32.4 3.6 19 25-43 140-160 (442)
30 PRK09821 putative transporter; 36.0 21 0.00046 34.1 1.6 60 129-193 270-331 (454)
31 PF02665 Nitrate_red_gam: Nitr 35.8 39 0.00084 28.8 3.0 78 110-190 64-141 (222)
32 PRK14984 high-affinity glucona 35.4 32 0.0007 32.8 2.7 61 129-194 255-317 (438)
33 PF07477 Glyco_hydro_67C: Glyc 31.5 36 0.00079 30.5 2.2 33 105-137 106-139 (225)
34 PF03649 UPF0014: Uncharacteri 31.4 1.1E+02 0.0024 27.1 5.1 66 129-204 57-122 (250)
35 PF11174 DUF2970: Protein of u 31.3 87 0.0019 22.3 3.7 50 146-196 6-55 (56)
36 PRK12884 ubiA prenyltransferas 31.0 91 0.002 26.4 4.5 33 136-169 226-258 (279)
37 PF03606 DcuC: C4-dicarboxylat 30.5 1.7E+02 0.0036 27.5 6.5 63 132-199 279-341 (465)
38 PF00033 Cytochrom_B_N: Cytoch 30.5 51 0.0011 25.1 2.6 61 125-188 5-65 (188)
39 TIGR02004 PTS-IIBC-malX PTS sy 29.6 99 0.0021 30.0 4.9 43 133-186 284-326 (517)
40 PF10027 DUF2269: Predicted in 29.3 1.2E+02 0.0026 23.7 4.5 30 140-169 11-40 (150)
41 COG3476 Tryptophan-rich sensor 28.9 1.3E+02 0.0029 25.6 5.0 42 120-162 33-75 (161)
42 TIGR02003 PTS-II-BC-unk1 PTS s 28.4 1.1E+02 0.0025 30.1 5.2 33 132-172 307-339 (548)
43 cd08761 Cyt_b561_CYB561D2_like 28.2 1.7E+02 0.0038 23.6 5.5 71 134-205 23-93 (183)
44 PF09678 Caa3_CtaG: Cytochrome 28.2 76 0.0017 27.1 3.6 58 96-154 64-121 (244)
45 PF03596 Cad: Cadmium resistan 28.1 19 0.00041 30.8 -0.1 42 106-158 109-150 (191)
46 PF03176 MMPL: MMPL family; I 27.9 32 0.00069 29.4 1.3 69 133-202 201-272 (333)
47 PF07331 TctB: Tripartite tric 27.8 94 0.002 23.3 3.7 42 135-177 37-78 (141)
48 PF09026 CENP-B_dimeris: Centr 27.3 48 0.001 26.7 2.1 23 109-131 48-70 (101)
49 PF02468 PsbN: Photosystem II 27.1 62 0.0013 22.5 2.3 20 137-156 9-28 (43)
50 PRK10599 calcium/sodium:proton 27.1 30 0.00065 32.4 1.0 19 107-128 238-256 (366)
51 PF10067 DUF2306: Predicted me 26.0 39 0.00084 25.5 1.3 28 166-193 2-29 (103)
52 PRK10110 bifunctional PTS syst 25.6 1.3E+02 0.0028 29.3 4.9 40 136-186 296-335 (530)
53 PF04191 PEMT: Phospholipid me 24.7 1.1E+02 0.0025 21.7 3.5 50 139-188 5-68 (106)
54 MTH00152 ND6 NADH dehydrogenas 24.6 1.8E+02 0.0038 23.7 4.9 45 132-195 19-64 (163)
55 KOG1607 Protein transporter of 24.3 21 0.00045 33.2 -0.6 22 67-88 296-317 (318)
56 TIGR00985 3a0801s04tom mitocho 23.3 87 0.0019 26.2 3.0 32 141-174 15-46 (148)
57 PRK11513 cytochrome b561; Prov 23.3 1.1E+02 0.0024 25.0 3.6 21 166-186 38-58 (176)
58 TIGR00378 cax calcium/proton e 22.7 42 0.0009 30.3 1.0 37 100-147 214-250 (349)
59 PF03845 Spore_permease: Spore 22.7 1.4E+02 0.003 25.6 4.2 84 101-199 229-317 (320)
60 TIGR02125 CytB-hydogenase Ni/F 22.5 1.8E+02 0.0039 23.3 4.6 60 125-185 4-64 (211)
61 PRK10573 type IV pilin biogene 22.4 79 0.0017 28.2 2.7 37 92-128 162-202 (399)
62 cd08763 Cyt_b561_CYB561 Verteb 22.2 2.9E+02 0.0062 22.6 5.7 31 168-198 73-103 (143)
63 PF04973 NMN_transporter: Nico 22.1 63 0.0014 26.1 1.9 61 141-202 53-114 (181)
64 TIGR00351 narI respiratory nit 21.9 99 0.0021 26.7 3.1 78 108-189 64-141 (224)
65 PF02064 MAS20: MAS20 protein 21.9 30 0.00065 27.8 0.0 34 140-175 4-37 (121)
66 KOG1381 Para-hydroxybenzoate-p 21.8 1.5E+02 0.0033 28.3 4.5 45 145-189 299-345 (353)
67 MTH00015 ND6 NADH dehydrogenas 21.7 2.2E+02 0.0049 22.9 5.0 45 132-195 19-64 (155)
68 COG1971 Predicted membrane pro 21.3 1.1E+02 0.0023 26.8 3.2 49 109-158 44-92 (190)
69 PF13172 PepSY_TM_1: PepSY-ass 21.1 1.4E+02 0.003 18.5 2.9 28 166-193 2-30 (34)
70 PRK10452 multidrug efflux syst 20.8 2.6E+02 0.0057 22.2 5.1 56 138-202 1-56 (120)
71 PRK01318 membrane protein inse 20.2 2E+02 0.0044 28.1 5.1 74 103-192 408-486 (521)
No 1
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=99.77 E-value=3.2e-19 Score=147.28 Aligned_cols=74 Identities=34% Similarity=0.508 Sum_probs=68.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhceeeeeeCCHHH---------------------------------------HHHhhhh
Q 028726 132 HWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEE---------------------------------------KAKAKDL 172 (205)
Q Consensus 132 hwGHPlmMawVLLAmG~YA~YLGwQiRrtad~Ev---------------------------------------k~K~r~r 172 (205)
.++||++|+.++|++++|+.|+|||+|+..+.+. +.|+|++
T Consensus 3 ~liHP~lm~~~vf~~~~~~~~lG~q~R~rR~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~ 82 (175)
T PF13301_consen 3 ALIHPVLMGLLVFPVGGYAIYLGWQWRQRRLQENHGRWLTGGVVVAVLIALAYSIARAIFLILALTGTRKELVKLKARDR 82 (175)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhccccccchhcccchhhHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 5799999977779999999999999999965555 5899999
Q ss_pred chhhHHHHHHHHHHhhhhhhhHHhhCCCCCcCC
Q 028726 173 HPKLLGGMFFFFALGATGGITSLLTSDKPIFER 205 (205)
Q Consensus 173 H~QLgs~LLaFMVLG~iGGMlSLvmQ~kPIfES 205 (205)
|+|+|++|++||++|++||++++.||++++|+|
T Consensus 83 H~~~g~~ll~~~~L~~lGG~~~~~~~~~~lf~s 115 (175)
T PF13301_consen 83 HYRLGFALLAFMGLGALGGQLGTYRQNGKLFWS 115 (175)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHcCCCCccC
Confidence 999999999999999999999999999999987
No 2
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=89.47 E-value=0.86 Score=34.32 Aligned_cols=71 Identities=15% Similarity=-0.006 Sum_probs=53.9
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHHhhCCC
Q 028726 126 LPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDK 200 (205)
Q Consensus 126 LPE~IkhwGHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSLvmQ~k 200 (205)
.+....-+.|-+++ ++-++++.-+.++.+.-+... .+..++..|..+|-..+.++++=.+.|.++..+++.
T Consensus 29 ~~~~~~~~~H~~lq-~l~~~~~~~G~~~~~~~~~~~---~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~ 99 (137)
T PF03188_consen 29 KSRKWWFRIHWILQ-VLALVFAIIGFVAIFINKNRN---GKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGL 99 (137)
T ss_pred cccchHHHHHHHHH-HHHHHHHHHHHHHHHHhcccc---CCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCC
Confidence 45555677898888 677777777777776544322 346788899999999999999999999998876443
No 3
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=85.84 E-value=1.6 Score=35.24 Aligned_cols=53 Identities=21% Similarity=0.141 Sum_probs=43.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHHhh
Q 028726 133 WGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLT 197 (205)
Q Consensus 133 wGHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSLvm 197 (205)
..|=++ |.+.+.+.+|+.|.|++.| ..+|+|+|.|-+-....-++.|++--+|
T Consensus 79 ~~Hi~L-A~~~~pL~l~tl~~a~~~~-----------~~~Hrki~r~t~piWlyvsvTGvvVYlm 131 (133)
T PF04238_consen 79 ISHIIL-AIVALPLVLYTLYRALRGR-----------FTRHRKIGRWTFPIWLYVSVTGVVVYLM 131 (133)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHcC-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345444 4888999999999999984 6799999999999999988888875544
No 4
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=82.34 E-value=1.5 Score=41.31 Aligned_cols=61 Identities=21% Similarity=0.041 Sum_probs=37.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhh-hceeeeeeCCHHH-HHHhhhhchhhHHHHHHHHHHhhhhhhhH
Q 028726 129 WLVHWGHPGNMAVVLFAMGGYGTY-LGFCIRYSDDMEE-KAKAKDLHPKLLGGMFFFFALGATGGITS 194 (205)
Q Consensus 129 ~IkhwGHPlmMawVLLAmG~YA~Y-LGwQiRrtad~Ev-k~K~r~rH~QLgs~LLaFMVLG~iGGMlS 194 (205)
++.-.|+|..- |+.-.+++.| +|++ |..+.|+ .+-....=.+.|.++|..=+-|+.|+++.
T Consensus 258 ~~~flG~p~iA---Llig~l~a~~~l~~~--~~~~~~~~~~~~~~al~~~g~IlLItgaGGafg~vl~ 320 (441)
T PF02447_consen 258 ILSFLGDPNIA---LLIGVLIALYLLGRR--RGMSREEVMKWLEKALKPAGMILLITGAGGAFGQVLK 320 (441)
T ss_pred HHHHhCCcHHH---HHHHHHHHHHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 33455677533 4444445554 4543 3333343 35566667788999999889999998874
No 5
>PRK13681 hypothetical protein; Provisional
Probab=81.53 E-value=0.7 Score=30.99 Aligned_cols=17 Identities=29% Similarity=0.796 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhhhhh
Q 028726 177 LGGMFFFFALGATGGIT 193 (205)
Q Consensus 177 gs~LLaFMVLG~iGGMl 193 (205)
-..+|++|++|.+|||+
T Consensus 8 ~i~lfalmAiGgigGvm 24 (35)
T PRK13681 8 VIALFLLMAIGGIGGVM 24 (35)
T ss_pred HHHHHHHHHhcCcccee
Confidence 35689999999999986
No 6
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=81.35 E-value=4.8 Score=30.51 Aligned_cols=69 Identities=19% Similarity=0.130 Sum_probs=51.8
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHHhhCCC
Q 028726 128 DWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDK 200 (205)
Q Consensus 128 E~IkhwGHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSLvmQ~k 200 (205)
.....+.|=+++ ++-+.++.-+.++++.-+.. ..+..+...|..+|-..+.++++=.++|......++.
T Consensus 32 ~~~~~~~H~~l~-~l~~~~~~~G~~~~~~~~~~---~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~ 100 (131)
T cd08554 32 KRALKLLHAILH-LLAFVLGLVGLLAVFLFHNA---GGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLL 100 (131)
T ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHHHHhccc---cCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334467788888 67777777777777765531 1234678899999999999999999999998765554
No 7
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=79.93 E-value=2.7 Score=33.92 Aligned_cols=64 Identities=17% Similarity=0.114 Sum_probs=48.4
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhH
Q 028726 126 LPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITS 194 (205)
Q Consensus 126 LPE~IkhwGHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlS 194 (205)
.+....-+.|=.+| ++-+++++.+..+|+..+ ...+..++..|..+|-.++.++++=.++|.+.
T Consensus 63 ~~~~~~~~~H~~~q-~~~~~~~i~g~~~~~~~~----~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~ 126 (191)
T cd08760 63 LGDPVWFYLHAGLQ-LLAVLLAIAGFVLGIVLV----QGGGGSLNNAHAILGIIVLALAILQPLLGLLR 126 (191)
T ss_pred cCCchhHHHHHHHH-HHHHHHHHHHHHHHHHhh----ccCCCCCcCcchhhhHHHHHHHHHHHHHHHhc
Confidence 44445566788888 677777777778887765 23346789999999999999999988888864
No 8
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=79.18 E-value=6.1 Score=31.96 Aligned_cols=61 Identities=16% Similarity=0.013 Sum_probs=34.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHHh
Q 028726 132 HWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLL 196 (205)
Q Consensus 132 hwGHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSLv 196 (205)
-+.|=+++ ++-++++.-+....+.-+ +.-.+..+.+.|..+|-..+.++++=.++|..+..
T Consensus 58 ~~~H~~l~-~la~~~~~~G~~~~~~~~---~~~~~~hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~ 118 (183)
T cd08761 58 VRLHWILQ-LLALLCILAGLVAIYYNK---ERNGKPHFTSWHGILGLVTVILIVLQALGGLALLY 118 (183)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhc---ccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHh
Confidence 45666666 343444333333333221 10112346677888888888888887777776654
No 9
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=78.26 E-value=4 Score=30.72 Aligned_cols=66 Identities=20% Similarity=0.148 Sum_probs=41.1
Q ss_pred hhHHH--HHHHHH-HHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHHhhCCCCCcCC
Q 028726 135 HPGNM--AVVLFA-MGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFER 205 (205)
Q Consensus 135 HPlmM--awVLLA-mG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSLvmQ~kPIfES 205 (205)
||++| ||+++. .|+.+.+..+ .|. ..|.+....|.-+-.+.+.++++|..-+..+--.++++-|+|
T Consensus 2 H~~lm~~~f~~l~~~~il~~r~~~-~~~----~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s 70 (137)
T PF03188_consen 2 HPILMTIGFVFLMPEGILAARYNP-FRR----KSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKS 70 (137)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhh-hcc----cccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCC
Confidence 99999 344333 4555544222 221 223445567888888888888888877777666666676654
No 10
>COG2322 Predicted membrane protein [Function unknown]
Probab=72.97 E-value=4.5 Score=35.14 Aligned_cols=54 Identities=15% Similarity=0.011 Sum_probs=40.9
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHHhh
Q 028726 132 HWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLT 197 (205)
Q Consensus 132 hwGHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSLvm 197 (205)
-|.|=.+- .+.+-++.|+.++||+.. .+||+|+|.|--.+--.-++-|++--+|
T Consensus 119 L~~Hi~LA-~i~vPLal~al~~a~~~~-----------~~rHrki~r~ta~~Wlyva~tGv~VYLm 172 (177)
T COG2322 119 LITHIILA-AINVPLALYALILAWKGL-----------YERHRKIGRWTAPLWLYVALTGVVVYLM 172 (177)
T ss_pred HHHHHHHH-HHhhhHHHHHHHHHhcch-----------hhhhheeeehhhHHHHHHHHHHHHHhhe
Confidence 67887766 888899999999999876 7899999998766655555555544333
No 11
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=72.21 E-value=7.8 Score=28.13 Aligned_cols=53 Identities=23% Similarity=0.147 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhhcee-eeee-------CCHHHHHHhhhhchhhHHHHHHHHHHhhhhhh
Q 028726 139 MAVVLFAMGGYGTYLGFC-IRYS-------DDMEEKAKAKDLHPKLLGGMFFFFALGATGGI 192 (205)
Q Consensus 139 MawVLLAmG~YA~YLGwQ-iRrt-------ad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGM 192 (205)
+|.+++.+.+-+.|+.|. .++. ..+..|. ..+.|.-+|-+.+.++.+=++-|+
T Consensus 23 ~al~~l~~~isGl~l~~p~~~~~~~~~r~~~~~~~r~-~~dlH~~~G~~~~~~ll~~a~TG~ 83 (88)
T PF13703_consen 23 LALLLLLLLISGLYLWWPRRWRWFFSLRPKRSKSKRR-WFDLHRVLGLWFLPFLLVIALTGL 83 (88)
T ss_pred HHHHHHHHHHHHHHHhhHHhcCcccccccCCCCccCh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777888883 2211 1112223 788999999998877665444444
No 12
>PF03203 MerC: MerC mercury resistance protein
Probab=70.33 E-value=9.8 Score=29.17 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=21.6
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhcee
Q 028726 132 HWGHPGNMAVVLFAMGGYGTYLGFC 156 (205)
Q Consensus 132 hwGHPlmMawVLLAmG~YA~YLGwQ 156 (205)
+|.|-.++ .+...+++++.|.|||
T Consensus 37 ~~~h~~ll-~~~~~i~~~al~~g~r 60 (116)
T PF03203_consen 37 EWFHWLLL-YLFLPIALLALFRGYR 60 (116)
T ss_pred cHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 78898888 8889999999999995
No 13
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=68.11 E-value=16 Score=27.82 Aligned_cols=61 Identities=20% Similarity=0.096 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHHhhC
Q 028726 134 GHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTS 198 (205)
Q Consensus 134 GHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSLvmQ 198 (205)
.|=+++ ++-++++..+.+++++-+. .-.+..+.+.|..+|-..+.++++=.++|.+...-.
T Consensus 36 ~H~~lq-~~a~~~~~~g~~~~~~~~~---~~~~~~~~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~ 96 (129)
T smart00665 36 LHVVLQ-ILALVLGVIGLLAIFISHN---ESGIANFYSLHSWLGLAAFVLAGLQWLSGFLRPLPP 96 (129)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHcc---ccCCCCccchhHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344444 3444444455555554331 111357899999999999999999999999876443
No 14
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=60.26 E-value=9 Score=27.72 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhhhceeeeeeCCHHHH
Q 028726 140 AVVLFAMGGYGTYLGFCIRYSDDMEEK 166 (205)
Q Consensus 140 awVLLAmG~YA~YLGwQiRrtad~Evk 166 (205)
|++|++.|+--.|.|||...+...+..
T Consensus 4 gi~Llv~GivLl~~G~~~~~S~~s~~s 30 (59)
T PF11381_consen 4 GIALLVGGIVLLYFGYQASDSLGSQVS 30 (59)
T ss_pred eehHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 678999999999999999987433333
No 15
>cd03496 SQR_TypeC_CybS SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Eukaryotic SQRs reduce high potential quinones such as ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. CybS and CybL are the two transmembrane proteins of eukaryotic SQRs. They contain heme and quinone binding sites. CybS is the eukaryotic homolog of the bacterial SdhD subunit. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the transmembrane subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of
Probab=55.42 E-value=7.7 Score=30.06 Aligned_cols=64 Identities=17% Similarity=-0.009 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHHhhCCC
Q 028726 134 GHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDK 200 (205)
Q Consensus 134 GHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSLvmQ~k 200 (205)
+||+++ ..+.....|=+++|+|.=..+=-..| ++. .=+++.-+++.....-+.+|+.-+-+++-
T Consensus 30 ~~pil~-~ll~~~~~~H~~~G~q~vIeDYv~~~-~~~-~~~~~a~~~~~~~s~~~l~Gl~~~~~~d~ 93 (104)
T cd03496 30 LSPVMD-AALAAALLLHSHWGFESCIIDYVPKR-VGG-KLHKLAMYLLYAGSALSLAGLYYFNTNDV 93 (104)
T ss_pred ccHHHH-HHHHHHHHHHHHhcceeeeeecCCCc-ccc-hHHHHHHHHHHHHHHHHHHHheeeeecCc
Confidence 799888 78888888889999998876411111 111 11566777777777777888776666554
No 16
>KOG1563 consensus Mitochondrial protein Surfeit 1/SURF1/SHY1, required for expression of cytochrome oxidase [Energy production and conversion]
Probab=51.52 E-value=7.1 Score=36.09 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhc-eeeeee
Q 028726 140 AVVLFAMGGYGTYLG-FCIRYS 160 (205)
Q Consensus 140 awVLLAmG~YA~YLG-wQiRrt 160 (205)
+|+++++++.+-+|| ||.||-
T Consensus 60 ~~ll~liPittFgLGtWQvkRl 81 (288)
T KOG1563|consen 60 AWLLLLIPITTFGLGTWQVKRL 81 (288)
T ss_pred HHHHHHhhhheeeccceeehhH
Confidence 378999999999999 999987
No 17
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=51.48 E-value=43 Score=25.36 Aligned_cols=67 Identities=18% Similarity=0.047 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHHhhCCCCCcC
Q 028726 134 GHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFE 204 (205)
Q Consensus 134 GHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSLvmQ~kPIfE 204 (205)
-||++|.+....+-.-+... . | ..+...|...+.-|.-+..+-+.+.+.|..-+..+--.++++-|.
T Consensus 4 ~H~~lm~~g~~~l~~~~il~-~--r-~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~ 70 (131)
T cd08554 4 WHPLLMVIGFVFLMGEALLV-Y--R-VFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLY 70 (131)
T ss_pred ccHHHHHHHHHHHHHHHHHH-h--c-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccch
Confidence 39999955433232222211 0 1 112223444456798888888877777777666655445555443
No 18
>PRK10472 low affinity gluconate transporter; Provisional
Probab=48.87 E-value=9.4 Score=36.32 Aligned_cols=58 Identities=12% Similarity=0.005 Sum_probs=35.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHhh-hceeeeeeCCHHHH-HHhhhhchhhHHHHHHHHHHhhhhhhh
Q 028726 131 VHWGHPGNMAVVLFAMGGYGTY-LGFCIRYSDDMEEK-AKAKDLHPKLLGGMFFFFALGATGGIT 193 (205)
Q Consensus 131 khwGHPlmMawVLLAmG~YA~Y-LGwQiRrtad~Evk-~K~r~rH~QLgs~LLaFMVLG~iGGMl 193 (205)
.-.|||..- |+.-.+++.| +|++ | ..+.|+- +-..+.=.+.|.+++..=+-|+.|+++
T Consensus 261 ~flG~p~iA---Llig~l~a~~~lg~~-~-~~~~~~~~~~~~~al~~~g~ilLItGaGGafg~vL 320 (445)
T PRK10472 261 EFIGHPFTA---ILVACLVAIYGLAMR-Q-GMPKDKVMEICGHALQPAGIILLVIGAGGVFKQVL 320 (445)
T ss_pred HHhCChHHH---HHHHHHHHHHHHHhc-c-CCcHHHHHHHHHHHHHhhhHhheeecChHHHHHHH
Confidence 356888754 4444566664 7766 3 3333333 324444456888888887788888876
No 19
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=48.74 E-value=31 Score=24.21 Aligned_cols=55 Identities=20% Similarity=-0.009 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhhhceeeeeeCCHHHH-HHhhhhchhhHHHHHHHHHHhhhhhhh
Q 028726 139 MAVVLFAMGGYGTYLGFCIRYSDDMEEK-AKAKDLHPKLLGGMFFFFALGATGGIT 193 (205)
Q Consensus 139 MawVLLAmG~YA~YLGwQiRrtad~Evk-~K~r~rH~QLgs~LLaFMVLG~iGGMl 193 (205)
-|++-.++|.++.-.-|+.+..++...+ .-....+...|.+++..+++|.++=-+
T Consensus 7 ~givy~~lg~~a~~~a~~~~~~~~~~~~~~~~~l~~~p~G~~ll~~vg~gli~~gi 62 (73)
T PF06724_consen 7 RGIVYGALGYLALQAALGGGGSSDQGSQGALAWLLEQPFGRWLLGAVGLGLIGYGI 62 (73)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 3677888888888888874434444444 334445566999999999999887444
No 20
>PRK10034 fructuronate transporter; Provisional
Probab=48.17 E-value=11 Score=35.84 Aligned_cols=61 Identities=11% Similarity=-0.028 Sum_probs=38.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhh-hceeeeeeCCHHHH-HHhhhhchhhHHHHHHHHHHhhhhhhhH
Q 028726 129 WLVHWGHPGNMAVVLFAMGGYGTY-LGFCIRYSDDMEEK-AKAKDLHPKLLGGMFFFFALGATGGITS 194 (205)
Q Consensus 129 ~IkhwGHPlmMawVLLAmG~YA~Y-LGwQiRrtad~Evk-~K~r~rH~QLgs~LLaFMVLG~iGGMlS 194 (205)
++.-+|||..- |+.-.+.+.| +|.+ +..+.++- .-........|.+++..=+-|+.|+++.
T Consensus 258 ~~~fiG~p~iA---Llig~l~a~~~lg~~--~~~~~~~~~~~~~~~l~~~g~IlLitgaGGafg~vl~ 320 (447)
T PRK10034 258 VVNFIGSSPIA---MFIAMVVAFVLFGTA--RGHDMQWVMNAFESAVKSIAMVILIIGAGGVLKQTII 320 (447)
T ss_pred HHHHhCCHHHH---HHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhhhHhhheecChHHHHHHHH
Confidence 33467888754 4444444443 3555 34444443 3366777788888888888889998874
No 21
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=48.06 E-value=40 Score=25.59 Aligned_cols=38 Identities=18% Similarity=-0.087 Sum_probs=24.4
Q ss_pred HhhhhchhhHHHHHHHHHHhhhhhhhHHhhCCCCCcCC
Q 028726 168 KAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFER 205 (205)
Q Consensus 168 K~r~rH~QLgs~LLaFMVLG~iGGMlSLvmQ~kPIfES 205 (205)
.-..-|.-+...-+.+++.|..-+..+--..+++.|.|
T Consensus 32 ~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s 69 (129)
T smart00665 32 TWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYS 69 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccc
Confidence 34566877777777777777766666554445566654
No 22
>PF11377 DUF3180: Protein of unknown function (DUF3180); InterPro: IPR021517 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=47.44 E-value=16 Score=29.37 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHhhhceeeeeeC
Q 028726 136 PGNMAVVLFAMGGYGTYLGFCIRYSD 161 (205)
Q Consensus 136 PlmMawVLLAmG~YA~YLGwQiRrta 161 (205)
|..-+.++++++.-..|+|||+|+-.
T Consensus 30 p~~~~~~l~~la~~~~~~a~~vr~~~ 55 (138)
T PF11377_consen 30 PWTAGVTLLVLAAVELWLAWQVRRRI 55 (138)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555777899999999999999775
No 23
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=42.62 E-value=35 Score=27.07 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=27.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhceeeeee
Q 028726 132 HWGHPGNMAVVLFAMGGYGTYLGFCIRYS 160 (205)
Q Consensus 132 hwGHPlmMawVLLAmG~YA~YLGwQiRrt 160 (205)
||.-+..++-++++++.|++..+|..|..
T Consensus 51 QWIFAFvI~avlfv~sl~vav~~~~~r~~ 79 (97)
T PF08611_consen 51 QWIFAFVIAAVLFVLSLVVAVPKWTGRDA 79 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccch
Confidence 99999999999999999999999998864
No 24
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=38.59 E-value=31 Score=29.45 Aligned_cols=51 Identities=18% Similarity=0.099 Sum_probs=35.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhh-hchhhHHHHHHHH
Q 028726 129 WLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKD-LHPKLLGGMFFFF 184 (205)
Q Consensus 129 ~IkhwGHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~-rH~QLgs~LLaFM 184 (205)
.+..|.-.+|+ .+++++-+=+-++|.+++ +.++.||-+ .+...|.++.+||
T Consensus 99 ~~~~~~~~~~~-~~~~~~iid~~~l~r~vk----k~v~~kFp~~~~~~~gl~~Ya~~ 150 (170)
T PF11241_consen 99 QVQLYVTLAMY-VLLLLVIIDGVILGRRVK----KRVAEKFPDTTESGRGLGWYAFM 150 (170)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHH----HHHHHHCCCCcCCCcchhhHHHH
Confidence 33467777777 667777788889999887 456666666 5566677777665
No 25
>PF14007 YtpI: YtpI-like protein
Probab=37.79 E-value=40 Score=26.05 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHH
Q 028726 142 VLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFAL 186 (205)
Q Consensus 142 VLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVL 186 (205)
+++....|. |-=.|.||+.|+-+|+-++.|-....+.++.++++
T Consensus 5 Ii~S~~~yv-y~k~k~~Rs~~p~~k~~~~aka~ialG~fl~~fgi 48 (89)
T PF14007_consen 5 IIISLVFYV-YYKIKYFRSKDPMEKKWYSAKANIALGIFLILFGI 48 (89)
T ss_pred HHHHHHHHH-HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 44577788999999988888888877877777764
No 26
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=37.41 E-value=27 Score=27.79 Aligned_cols=15 Identities=27% Similarity=0.115 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHh
Q 028726 137 GNMAVVLFAMGGYGT 151 (205)
Q Consensus 137 lmMawVLLAmG~YA~ 151 (205)
++|.|+++||..|..
T Consensus 58 ~~~~w~~~A~~ly~~ 72 (103)
T PF11027_consen 58 MMMLWMVLAMALYLL 72 (103)
T ss_pred HHHHHHHHHHHHHHc
Confidence 567899999999986
No 27
>PRK13685 hypothetical protein; Provisional
Probab=36.83 E-value=43 Score=29.41 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=11.9
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 028726 132 HWGHPGNMAVVLFAMGGY 149 (205)
Q Consensus 132 hwGHPlmMawVLLAmG~Y 149 (205)
||.||.+- |.++.+..+
T Consensus 5 ~F~~P~~l-~ll~~~~~~ 21 (326)
T PRK13685 5 GFAHPWFF-LFLLVVAAL 21 (326)
T ss_pred chhhHHHH-HHHHHHHHH
Confidence 99999776 766654333
No 28
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=36.56 E-value=77 Score=24.36 Aligned_cols=46 Identities=22% Similarity=0.187 Sum_probs=30.5
Q ss_pred HhhcCCCCchhh-hhhhhHHHHHHHHHHHHHHh-hhceeeeeeCCHHHH
Q 028726 120 LVKSWNLPDWLV-HWGHPGNMAVVLFAMGGYGT-YLGFCIRYSDDMEEK 166 (205)
Q Consensus 120 ~frsl~LPE~Ik-hwGHPlmMawVLLAmG~YA~-YLGwQiRrtad~Evk 166 (205)
.+..+.+|+... +..-++=+ |.|+..|.|++ -+||++-.-+|-++.
T Consensus 22 ~~~~~~~~~~~~~~ii~~lP~-~~Lv~fG~Ysl~~lgy~v~tFnDcpeA 69 (91)
T PF08285_consen 22 LLGLLPLPPEPQQEIIPYLPF-YALVSFGCYSLFTLGYGVATFNDCPEA 69 (91)
T ss_pred HHccCCCCchhHHHHHHHhhH-HHHHHHHHHHHHHHHHhhhccCCCHHH
Confidence 334444664333 32223334 89999999997 789999877887776
No 29
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
Probab=36.54 E-value=41 Score=32.40 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=11.9
Q ss_pred CcchhhhH--HhhCCCCchhh
Q 028726 25 FPIAAAAA--ATSGFLPCALS 43 (205)
Q Consensus 25 ~~~~~~~~--~~~~~~p~~~~ 43 (205)
++.+.+++ .+|.++||++.
T Consensus 140 i~v~la~g~~~~h~~vpP~Pg 160 (442)
T COG2610 140 IAVPLAAGLSVTHMFVPPHPG 160 (442)
T ss_pred HHHHHHHHHHHhcccCCCCCc
Confidence 34444433 48999998874
No 30
>PRK09821 putative transporter; Provisional
Probab=35.99 E-value=21 Score=34.09 Aligned_cols=60 Identities=15% Similarity=0.005 Sum_probs=36.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHh-hhceeeeeeCCHHHH-HHhhhhchhhHHHHHHHHHHhhhhhhh
Q 028726 129 WLVHWGHPGNMAVVLFAMGGYGT-YLGFCIRYSDDMEEK-AKAKDLHPKLLGGMFFFFALGATGGIT 193 (205)
Q Consensus 129 ~IkhwGHPlmMawVLLAmG~YA~-YLGwQiRrtad~Evk-~K~r~rH~QLgs~LLaFMVLG~iGGMl 193 (205)
.+.-+|||..- |+.--+++. .+|++ +..+.|+. +...+.=...|.+++.-=+-|+.|+|+
T Consensus 270 ~l~fiG~p~iA---Llig~l~A~~~lg~~--~~~~~~~~~~~~~~al~~~g~IlLItgaGGafg~VL 331 (454)
T PRK09821 270 TLQLIGSPMVA---LLIALVLAFWLLALR--RGWSLQHTSDVMGSALPTAAVVILVTGAGGVFGKVL 331 (454)
T ss_pred HHHHhCCHHHH---HHHHHHHHHHHHhhc--cCCcHHHHHHHHHHHHHhhhHhheeecChHHHHHHH
Confidence 34467999754 333333443 45655 34444444 445666677888888666667888776
No 31
>PF02665 Nitrate_red_gam: Nitrate reductase gamma subunit; InterPro: IPR003816 The nitrate reductase enzyme (1.7.99.4 from EC) is composed of three subunits; an alpha, a beta and two gamma. It is the second nitrate reductase enzyme which it can substitute for the NRA enzyme in Escherichia coli allowing it to use nitrate as an electron acceptor during anoerobic respiration []. Nitrate reductase gamma subunit resembles cytochrome b and transfers electrons from quinones to the beta subunit [].; GO: 0008940 nitrate reductase activity, 0055114 oxidation-reduction process, 0009325 nitrate reductase complex; PDB: 1Y5L_C 3IR5_C 1Y5I_C 1Y5N_C 1Y4Z_C 3IR6_C 3IR7_C 1SIW_C 3EGW_C 1Q16_C.
Probab=35.76 E-value=39 Score=28.80 Aligned_cols=78 Identities=13% Similarity=-0.067 Sum_probs=45.5
Q ss_pred hHHhhhhHHHHhhcCCCCchhhhhhhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhh
Q 028726 110 VRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGAT 189 (205)
Q Consensus 110 l~~~lePia~~frsl~LPE~IkhwGHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~i 189 (205)
+..++.|. .+++.+++++...|+.-.+.. . ++++-..++-.+.=.||..|+++|....-..+-+-.++++.+++|..
T Consensus 64 ~~gll~p~-~~~~~~gi~~~~~~~~~~~~g-~-~~G~l~lvGl~~Ll~RR~~~~~vr~~s~~~D~~~L~lLl~i~~tG~~ 140 (222)
T PF02665_consen 64 VVGLLIPG-AWFEALGISDEFYQLLAEVLG-D-IAGLLALVGLLILLVRRLFDPRVRAISTPSDYFVLLLLLAIVLTGLL 140 (222)
T ss_dssp HHHHHS-T-TTTTTT-S-HHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHSHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhH-HHHHHHhCchHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 34456665 345667788766655333332 1 22222333345566789999999987777777777888888887765
Q ss_pred h
Q 028726 190 G 190 (205)
Q Consensus 190 G 190 (205)
.
T Consensus 141 ~ 141 (222)
T PF02665_consen 141 M 141 (222)
T ss_dssp C
T ss_pred H
Confidence 4
No 32
>PRK14984 high-affinity gluconate transporter; Provisional
Probab=35.41 E-value=32 Score=32.79 Aligned_cols=61 Identities=10% Similarity=-0.049 Sum_probs=36.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHh-hhceeeeeeCCH-HHHHHhhhhchhhHHHHHHHHHHhhhhhhhH
Q 028726 129 WLVHWGHPGNMAVVLFAMGGYGT-YLGFCIRYSDDM-EEKAKAKDLHPKLLGGMFFFFALGATGGITS 194 (205)
Q Consensus 129 ~IkhwGHPlmMawVLLAmG~YA~-YLGwQiRrtad~-Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlS 194 (205)
.+.-+|||.+- |+.-.+.+. .+|++ +..+. +...-..+.=...|.++|..=+-|+.|+++.
T Consensus 255 ~l~f~G~p~iA---Llig~l~a~~~lg~~--~~~~~~~~~~~~~~al~~~g~IlLI~gaGGafg~VL~ 317 (438)
T PRK14984 255 VAEFLGDPVMA---TLIAVLIAMFTFGLN--RGRSMDQINDTLVSSIKIIAMMLLIIGGGGAFKQVLV 317 (438)
T ss_pred HHHHhCCHHHH---HHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 33466899754 444444444 34455 34343 3333355555667777777777788888863
No 33
>PF07477 Glyco_hydro_67C: Glycosyl hydrolase family 67 C-terminus; InterPro: IPR011099 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the C-terminal region of alpha-glucuronidase, which is mainly alpha-helical. It wraps around the catalytic domain (IPR011100 from INTERPRO), making additional interactions both with the N-terminal domain (IPR005154 from INTERPRO) of its parent monomer and also forming the majority of the dimer-surface with the equivalent C-terminal domain of the other monomer of the dimer [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1GQL_A 1GQI_B 1GQJ_B 1GQK_A 1H41_A 1MQR_A 1K9F_A 1K9E_A 1L8N_A 1K9D_A ....
Probab=31.53 E-value=36 Score=30.46 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=25.5
Q ss_pred CCchhhHHhhhhHHHHhhcCCC-CchhhhhhhhH
Q 028726 105 PGAGTVRALFGPFVELVKSWNL-PDWLVHWGHPG 137 (205)
Q Consensus 105 ~g~~~l~~~lePia~~frsl~L-PE~IkhwGHPl 137 (205)
-|+..+.++-+|+++.|.+++- ||.+.=|+|=+
T Consensus 106 tGs~~~~QY~~~~~~~y~~~~tcPeelLLwFHHv 139 (225)
T PF07477_consen 106 TGSGATAQYAPPVAEQYEDLETCPEELLLWFHHV 139 (225)
T ss_dssp TST-GGGGS-HHHHHHHHSTTTS-GGGHHHH-EE
T ss_pred CCCCchhhcCHHHHHHhcCcccCCHHHHhhhccC
Confidence 4889999999999999999986 99999777743
No 34
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=31.39 E-value=1.1e+02 Score=27.06 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=41.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHHhhCCCCCcC
Q 028726 129 WLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFE 204 (205)
Q Consensus 129 ~IkhwGHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSLvmQ~kPIfE 204 (205)
+|-++.||..-..+++.|..+|+|.-.+ |.|.+.+|+ +.+.+++.++.|++-+++.++.++.|.++
T Consensus 57 ~if~~~~~~~~~l~~~~M~~~As~~a~~---------r~~~~~~~~-~~~~~~~~~~~~~~v~l~~lvl~~~~~~~ 122 (250)
T PF03649_consen 57 YIFKLNNPWLVILWLLVMILVASFTAAR---------RAKLRPKGL-FFPVLALSLGAGTIVTLLLLVLRGAPWFD 122 (250)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHHH---------hcccCccch-hHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3346667776656678888888875321 233333333 44555556666666777888888888775
No 35
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=31.34 E-value=87 Score=22.29 Aligned_cols=50 Identities=10% Similarity=0.122 Sum_probs=31.4
Q ss_pred HHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHHh
Q 028726 146 MGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLL 196 (205)
Q Consensus 146 mG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSLv 196 (205)
.+..+++.|.|-++.-+ +.-.+-+-.|+-+++++++++-.+.+=++..++
T Consensus 6 ~sVl~af~GVqs~~~~e-~Df~~~~p~~~Ii~gii~~~~fV~~Lv~lV~~v 55 (56)
T PF11174_consen 6 KSVLWAFFGVQSSKNRE-RDFAQGSPVHFIIVGIILAALFVAGLVLLVNLV 55 (56)
T ss_pred HHHHHHHhCcCcchhHH-HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667889988543211 112566778888888887776666555555443
No 36
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=31.00 E-value=91 Score=26.44 Aligned_cols=33 Identities=15% Similarity=0.051 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHh
Q 028726 136 PGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKA 169 (205)
Q Consensus 136 PlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~ 169 (205)
+... ++.++.+....|..|+..+..|++...|.
T Consensus 226 ~~y~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (279)
T PRK12884 226 ILYL-APVLVADLIFLYSAYSLLRSQDRETIRKV 258 (279)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 3344 44555555556666666555555544454
No 37
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=30.51 E-value=1.7e+02 Score=27.52 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=36.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHHhhCC
Q 028726 132 HWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSD 199 (205)
Q Consensus 132 hwGHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSLvmQ~ 199 (205)
+|.=+-++ .+.+.+|+...+.+-|-++..+...+.=++.. +..+.+.++.|-.-|..-+..++
T Consensus 279 ~~~~~~~~-~~fl~~~ii~~~i~~~~~~~~~~~~~~F~~G~----~~~~~~a~vVgla~ai~v~~~~~ 341 (465)
T PF03606_consen 279 KWYFPEIA-ALFLIIGIIIGLIRHRSGKSPNEIVKAFFKGM----GDMLSFALVVGLARAISVFMEGG 341 (465)
T ss_pred cccHHHHH-HHHHHHHHHHHHHHhhccCCHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcCC
Confidence 68888888 67778888888877655544444444333332 33344455555555554444333
No 38
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=30.50 E-value=51 Score=25.12 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=37.8
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhh
Q 028726 125 NLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGA 188 (205)
Q Consensus 125 ~LPE~IkhwGHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~ 188 (205)
..+.-+.||..=+.| +++++.|.+..+.-+ ....+...+...+.-|.-+|-.+++++++=.
T Consensus 5 ~~~~R~~Hw~~al~~-~~l~~tG~~~~~~~~--~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~ 65 (188)
T PF00033_consen 5 SLFTRLLHWLNALLF-ILLLITGLYLMFPFW--WLAGGFPGRQLLRWLHFSLGIVFLALFLLRI 65 (188)
T ss_dssp -HHHHHHHHHHHHHH-HHHHHHHHHHH-TTG--GGGGTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHHHcccc--cccCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455699888888 667666666554331 1124555557788889988887776665433
No 39
>TIGR02004 PTS-IIBC-malX PTS system, maltose and glucose-specific IIBC component. This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity.
Probab=29.57 E-value=99 Score=29.98 Aligned_cols=43 Identities=21% Similarity=0.124 Sum_probs=28.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHH
Q 028726 133 WGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFAL 186 (205)
Q Consensus 133 wGHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVL 186 (205)
-..|.|| ..|-+.+ +|+|. ++++|.|+|.+.. +.|..+.-|..
T Consensus 284 G~~~~~m-fglpgaa-lAmy~------~a~~e~rk~v~~~---l~~aalts~lt 326 (517)
T TIGR02004 284 GKMPTFL-GGLPGAA-LAMYH------CARPANRHKIKAL---LLSGVVACAVG 326 (517)
T ss_pred CchHHHH-HhhHHHH-HHHHH------hcCHHHHHHHHHH---HHHHHHHHHHh
Confidence 4458888 7777776 78884 6889988776543 44444433333
No 40
>PF10027 DUF2269: Predicted integral membrane protein (DUF2269); InterPro: IPR018729 Members of this family of bacterial hypothetical integral membrane proteins have no known function.
Probab=29.27 E-value=1.2e+02 Score=23.71 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhceeeeeeCCHHHHHHh
Q 028726 140 AVVLFAMGGYGTYLGFCIRYSDDMEEKAKA 169 (205)
Q Consensus 140 awVLLAmG~YA~YLGwQiRrtad~Evk~K~ 169 (205)
++++++-+.....+.|+.++++|+++....
T Consensus 11 ail~~G~~~~~~~~~~~a~r~~~~~~~~~~ 40 (150)
T PF10027_consen 11 AILLVGPGFVAAVMMWRARRTGDPEAIARA 40 (150)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 477788888888889999999999887443
No 41
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=28.86 E-value=1.3e+02 Score=25.65 Aligned_cols=42 Identities=26% Similarity=0.474 Sum_probs=37.2
Q ss_pred HhhcCCCCchhh-hhhhhHHHHHHHHHHHHHHhhhceeeeeeCC
Q 028726 120 LVKSWNLPDWLV-HWGHPGNMAVVLFAMGGYGTYLGFCIRYSDD 162 (205)
Q Consensus 120 ~frsl~LPE~Ik-hwGHPlmMawVLLAmG~YA~YLGwQiRrtad 162 (205)
|++++.-|.+.. .|.-|..= .+|++.+++++|+=|+.+...+
T Consensus 33 wy~~L~kP~w~pp~~~f~~vW-tvLy~l~~iSa~lvW~~~~~~~ 75 (161)
T COG3476 33 WYNNLKKPFWLPPEWAFPPVW-TVLYALIGISAYLVWEKGPGQG 75 (161)
T ss_pred HHHhccCCCCCChHHHhhHHH-HHHHHHHHHHHHHHHHHcCCCc
Confidence 999999999998 88888887 7999999999999999875544
No 42
>TIGR02003 PTS-II-BC-unk1 PTS system, IIBC component. This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter.
Probab=28.37 E-value=1.1e+02 Score=30.07 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=24.8
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhh
Q 028726 132 HWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDL 172 (205)
Q Consensus 132 hwGHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~r 172 (205)
.-..|.|| ..|-+.+ +|+|. ++++|.|+|.+..
T Consensus 307 ~G~~~~~m-FGLpgaa-lAmy~------~A~~enrk~v~~l 339 (548)
T TIGR02003 307 AGQMIGAT-AALMGIA-FAMFR------NVDADKKAKYKMM 339 (548)
T ss_pred cchHHHHH-HHHHHHH-HHHHH------hCCHHHHHHHHHH
Confidence 34678999 8887777 88885 6889998776543
No 43
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=28.19 E-value=1.7e+02 Score=23.58 Aligned_cols=71 Identities=15% Similarity=-0.013 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHHhhCCCCCcCC
Q 028726 134 GHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFER 205 (205)
Q Consensus 134 GHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSLvmQ~kPIfES 205 (205)
-||++|.+....+..-+.. -+|.+....+-.|+.....|.-+....+.++++|..-...+=-+.++|-|.|
T Consensus 23 ~Hp~~m~i~~~~l~~~~il-~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s 93 (183)
T cd08761 23 WHPLLMSLGFLLLMTEALL-LLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTS 93 (183)
T ss_pred hhHHHHHHHHHHHHHHHHH-HhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Confidence 4999995444434333333 2443322211344455567888888888888888666655555567776654
No 44
>PF09678 Caa3_CtaG: Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG); InterPro: IPR019108 This entry represents the CtaG protein required for the assembly of active caa3-type cytochrome c oxidase in Bacillus subtilis, and related proteins.
Probab=28.18 E-value=76 Score=27.10 Aligned_cols=58 Identities=22% Similarity=0.044 Sum_probs=36.6
Q ss_pred hhHHHHhhCCCchhhHHhhhhHHHHhhcCCCCchhhhhhhhHHHHHHHHHHHHHHhhhc
Q 028726 96 LPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLG 154 (205)
Q Consensus 96 ~p~~~~a~~~g~~~l~~~lePia~~frsl~LPE~IkhwGHPlmMawVLLAmG~YA~YLG 154 (205)
.|.+++.+.|..--.+.+=.+..++.+..-.-....-..||+.- +++|+...|.-|+-
T Consensus 64 aPpLLvlg~P~~l~~~~l~~~~~~~~~~~~~~~~~r~l~~P~va-~~lf~~~~~~wh~p 121 (244)
T PF09678_consen 64 APPLLVLGAPVTLLLRALPRRGRRWLRRALRSRVVRFLTHPLVA-LVLFAAVFWLWHLP 121 (244)
T ss_pred HHHHHHhcCcHHHHHhhCCcchHHHHHHHhhhHHHHHHhcHHHH-HHHHHHHHHHHHHH
Confidence 46666677777665555555555566655555555566777766 77777777766653
No 45
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=28.14 E-value=19 Score=30.80 Aligned_cols=42 Identities=17% Similarity=0.369 Sum_probs=22.8
Q ss_pred CchhhHHhhhhHHHHhhcCCCCchhhhhhhhHHHHHHHHHHHHHHhhhceeee
Q 028726 106 GAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIR 158 (205)
Q Consensus 106 g~~~l~~~lePia~~frsl~LPE~IkhwGHPlmMawVLLAmG~YA~YLGwQiR 158 (205)
|+||+.=+ -|. |.+.+.+|-+ +.. .|.++|-+---|+|++.-
T Consensus 109 GgDNigIY-iP~---Fa~~s~~~l~------v~l-~vF~ilv~v~c~la~~l~ 150 (191)
T PF03596_consen 109 GGDNIGIY-IPL---FASLSLAELI------VIL-IVFLILVGVWCFLAYKLA 150 (191)
T ss_pred CCCeEEEe-ehh---hhcCCHHHHH------HHH-HHHHHHHHHHHHHHHHHh
Confidence 99998654 343 4445544322 222 455555555556666553
No 46
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=27.88 E-value=32 Score=29.42 Aligned_cols=69 Identities=26% Similarity=0.256 Sum_probs=40.2
Q ss_pred hhhhHHHHHHHHHHHH-HHhhhceeeeee--CCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHHhhCCCCC
Q 028726 133 WGHPGNMAVVLFAMGG-YGTYLGFCIRYS--DDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPI 202 (205)
Q Consensus 133 wGHPlmMawVLLAmG~-YA~YLGwQiRrt--ad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSLvmQ~kPI 202 (205)
|.=|.++..+++++|+ |+.++--+.|.. ...+.+.-.+..+.+.|..++ +-++-++.|..+|...+-|.
T Consensus 201 ~~~~~l~~~l~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~a~~~~g~~i~-~s~ltt~~gf~~L~~s~~~~ 272 (333)
T PF03176_consen 201 WITPALVFVLLLGVGIDYSIHLINRYREELRRGMSRKEAIRRAVRSTGRAIL-LSALTTAIGFGSLLFSPFPP 272 (333)
T ss_pred eeehHhhhhhHHHhhhhhHHHHHHHHHHHHHhccchHHHHHHHHhccCchhH-HHHHHHHHHHHHHHHhhhhH
Confidence 3344444356667776 888776666543 222333345556666776665 55566667777777666553
No 47
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=27.84 E-value=94 Score=23.34 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhH
Q 028726 135 HPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLL 177 (205)
Q Consensus 135 HPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLg 177 (205)
=|.+.++++.++|+.-.+..++.+ .++++...+.+.++--+.
T Consensus 37 fP~~l~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ 78 (141)
T PF07331_consen 37 FPRLLGILLLILSLLLLVRSFRGP-DEDEEPFDRVDWKRVLLV 78 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-ccccccccHHHHHHHHHH
Confidence 577888888888887776666554 223333334444444333
No 48
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=27.31 E-value=48 Score=26.72 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=16.1
Q ss_pred hhHHhhhhHHHHhhcCCCCchhh
Q 028726 109 TVRALFGPFVELVKSWNLPDWLV 131 (205)
Q Consensus 109 ~l~~~lePia~~frsl~LPE~Ik 131 (205)
...+++.+...++-|++|=+-++
T Consensus 48 ea~~~~~~v~rYltSf~id~~v~ 70 (101)
T PF09026_consen 48 EAMAYFTMVKRYLTSFPIDDKVQ 70 (101)
T ss_dssp HHHHHHHHHHHHHCTS---HHHH
T ss_pred HHHhhcchHhhhhhccchhHhhh
Confidence 34788999999999999877655
No 49
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=27.13 E-value=62 Score=22.50 Aligned_cols=20 Identities=25% Similarity=0.512 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhhcee
Q 028726 137 GNMAVVLFAMGGYGTYLGFC 156 (205)
Q Consensus 137 lmMawVLLAmG~YA~YLGwQ 156 (205)
+.++.+|+++.+|+.|.++-
T Consensus 9 i~i~~~lv~~Tgy~iYtaFG 28 (43)
T PF02468_consen 9 IFISCLLVSITGYAIYTAFG 28 (43)
T ss_pred HHHHHHHHHHHhhhhhheeC
Confidence 45668899999999999984
No 50
>PRK10599 calcium/sodium:proton antiporter; Provisional
Probab=27.08 E-value=30 Score=32.44 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=14.5
Q ss_pred chhhHHhhhhHHHHhhcCCCCc
Q 028726 107 AGTVRALFGPFVELVKSWNLPD 128 (205)
Q Consensus 107 ~~~l~~~lePia~~frsl~LPE 128 (205)
|+.+...+|+.++. +++|+
T Consensus 238 Ae~lv~sIe~~v~~---~Glp~ 256 (366)
T PRK10599 238 TKMNASPLETLLTS---MNAPV 256 (366)
T ss_pred HHHhHhhHHHHHHh---cCCCH
Confidence 77777777777766 89993
No 51
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=26.03 E-value=39 Score=25.45 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=23.8
Q ss_pred HHHhhhhchhhHHHHHHHHHHhhhhhhh
Q 028726 166 KAKAKDLHPKLLGGMFFFFALGATGGIT 193 (205)
Q Consensus 166 k~K~r~rH~QLgs~LLaFMVLG~iGGMl 193 (205)
|.|....|+.+|-+-...|++++++|+.
T Consensus 2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~ 29 (103)
T PF10067_consen 2 RRKGPRLHRWLGRVYVAAMLISALSALF 29 (103)
T ss_pred CCCcccHHHhhhHHHHHHHHHHHHHHHH
Confidence 4578889999999999999988888764
No 52
>PRK10110 bifunctional PTS system maltose and glucose-specific transporter subunits IICB; Provisional
Probab=25.58 E-value=1.3e+02 Score=29.31 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHH
Q 028726 136 PGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFAL 186 (205)
Q Consensus 136 PlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVL 186 (205)
|.|| ..|-+.+ +|+|. ++++|.|+|.+.- +.|..+.-|..
T Consensus 296 ~~~m-fglpgaa-lAmy~------~A~~enrk~v~~~---l~~aa~ts~lt 335 (530)
T PRK10110 296 PAFL-GGLPGAA-LAMYH------CARPENRHKIKGL---LISGVIACVVG 335 (530)
T ss_pred HHHH-HhhHHHH-HHHHH------hcCHHHHHHHHHH---HHHHHHHHHHh
Confidence 7888 7777776 78884 7899999776543 44444443333
No 53
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=24.71 E-value=1.1e+02 Score=21.73 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHh-----hhceeeeeeCCH--H--HH----HHhh-hhchhhHHHHHHHHHHhh
Q 028726 139 MAVVLFAMGGYGT-----YLGFCIRYSDDM--E--EK----AKAK-DLHPKLLGGMFFFFALGA 188 (205)
Q Consensus 139 MawVLLAmG~YA~-----YLGwQiRrtad~--E--vk----~K~r-~rH~QLgs~LLaFMVLG~ 188 (205)
+|++++++|.... .+|...+...+. + .+ +=|| .||+.-.+.++.++..+-
T Consensus 5 ~G~~l~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l 68 (106)
T PF04191_consen 5 LGLLLILAGIALAIWAFKALGRFGTYYGDFFGREPQRLVTTGPYRYVRHPMYLGFLLILLGIAL 68 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCeecCCcccccCCcccccCCccCcCChHHHHHHHHHHHHHH
Confidence 4556666655544 345544443332 1 11 5577 699998888777765543
No 54
>MTH00152 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=24.56 E-value=1.8e+02 Score=23.72 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=29.8
Q ss_pred hhhhhHHHHHHHHHHHHHHh-hhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHH
Q 028726 132 HWGHPGNMAVVLFAMGGYGT-YLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSL 195 (205)
Q Consensus 132 hwGHPlmMawVLLAmG~YA~-YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSL 195 (205)
.-.||+.||..++....... +.|. ...+|.-..+-+-++|||+=+
T Consensus 19 ~~~~Pl~l~~~l~~~t~~~~~~~~~-------------------~~~~w~s~ilfli~iGGmlVl 64 (163)
T MTH00152 19 LSKQPLSLGLVLLLLSLFVCVEIGL-------------------TLSSWYGYLLFLVYVGGLLVM 64 (163)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHH-------------------HhHHHHHHHHHHHHHhHHHHH
Confidence 44799999888876665543 3333 123477777777788898754
No 55
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.26 E-value=21 Score=33.24 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=15.4
Q ss_pred CCcchhhhHHHHHhhhcccccc
Q 028726 67 ADGAQQVEEEEEKKEMEKPRET 88 (205)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~t 88 (205)
.|-++|+++||++|++.+.+++
T Consensus 296 eD~Rsd~~s~d~~~~~~~~~~~ 317 (318)
T KOG1607|consen 296 EDIRSDSESEDSSEEESKAEKP 317 (318)
T ss_pred ccccccccccccccccccccCC
Confidence 4778888777777776665554
No 56
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=23.35 E-value=87 Score=26.19 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhch
Q 028726 141 VVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHP 174 (205)
Q Consensus 141 wVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~ 174 (205)
++..+.-+|+.|.-+|-| +|||=|.|-+.|.+
T Consensus 15 ~a~~~flgYciYFD~KRR--~dPdFRkkLr~rr~ 46 (148)
T TIGR00985 15 IAAAAFLGYAIYFDYKRR--NDPDFRKKLRRRRK 46 (148)
T ss_pred HHHHHHHHHHHhhhhhhc--cCHHHHHHHHHHHH
Confidence 344455568888776654 78888866555444
No 57
>PRK11513 cytochrome b561; Provisional
Probab=23.30 E-value=1.1e+02 Score=25.00 Aligned_cols=21 Identities=5% Similarity=0.083 Sum_probs=13.9
Q ss_pred HHHhhhhchhhHHHHHHHHHH
Q 028726 166 KAKAKDLHPKLLGGMFFFFAL 186 (205)
Q Consensus 166 k~K~r~rH~QLgs~LLaFMVL 186 (205)
+..+..-|..+|..+++++++
T Consensus 38 ~~~~~~~H~s~G~~vl~L~v~ 58 (176)
T PRK11513 38 RPLINMIHVSCGISILVLMVV 58 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777777777665
No 58
>TIGR00378 cax calcium/proton exchanger (cax).
Probab=22.69 E-value=42 Score=30.30 Aligned_cols=37 Identities=11% Similarity=-0.037 Sum_probs=26.8
Q ss_pred HHhhCCCchhhHHhhhhHHHHhhcCCCCchhhhhhhhHHHHHHHHHHH
Q 028726 100 FDAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMG 147 (205)
Q Consensus 100 ~~a~~~g~~~l~~~lePia~~frsl~LPE~IkhwGHPlmMawVLLAmG 147 (205)
++...-|++.+.+-.+.+++. +++|| ...|.++++++
T Consensus 214 ~v~i~~~a~~lv~~~~~~~~~---~gi~~--------~~igl~iva~~ 250 (349)
T TIGR00378 214 TVIVAFCSEFLVGTIDNVVES---TGLSK--------LFIGVIVIPIV 250 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---cCCCH--------HHHHHHHHHHh
Confidence 344456788888888888876 89994 45677777776
No 59
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=22.67 E-value=1.4e+02 Score=25.58 Aligned_cols=84 Identities=18% Similarity=0.157 Sum_probs=51.1
Q ss_pred HhhCCCchhhHHhhhhHHHHhhcCCCCchhhhhhhhHHHHHHHH-----HHHHHHhhhceeeeeeCCHHHHHHhhhhchh
Q 028726 101 DAALPGAGTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLF-----AMGGYGTYLGFCIRYSDDMEEKAKAKDLHPK 175 (205)
Q Consensus 101 ~a~~~g~~~l~~~lePia~~frsl~LPE~IkhwGHPlmMawVLL-----AmG~YA~YLGwQiRrtad~Evk~K~r~rH~Q 175 (205)
.-..=|.+..++...|..+..|..++|+.+.+.-=-.++.|+.- ++-.|+++.+. +.-++.+++|
T Consensus 229 ~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~----------~~~f~~~~~~ 298 (320)
T PF03845_consen 229 TIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGL----------SQLFKLKDYK 298 (320)
T ss_pred HHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhCCCCcc
Confidence 34556889999999999999999999977765544444444443 33444444433 3456777777
Q ss_pred hHHHHHHHHHHhhhhhhhHHhhCC
Q 028726 176 LLGGMFFFFALGATGGITSLLTSD 199 (205)
Q Consensus 176 Lgs~LLaFMVLG~iGGMlSLvmQ~ 199 (205)
. .....|.+-...++.+..
T Consensus 299 ~-----~~~~~~i~~~i~~~~~~~ 317 (320)
T PF03845_consen 299 L-----LIIPVGIIIIISSIPMNP 317 (320)
T ss_pred h-----HHHHHHHHHHHHHHHcCc
Confidence 2 223334444444444443
No 60
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=22.54 E-value=1.8e+02 Score=23.25 Aligned_cols=60 Identities=17% Similarity=0.081 Sum_probs=33.6
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHhhhceeeeeeC-CHHHHHHhhhhchhhHHHHHHHHH
Q 028726 125 NLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSD-DMEEKAKAKDLHPKLLGGMFFFFA 185 (205)
Q Consensus 125 ~LPE~IkhwGHPlmMawVLLAmG~YA~YLGwQiRrta-d~Evk~K~r~rH~QLgs~LLaFMV 185 (205)
+.++-+-||..=+.+ ++++..|.|-....+...... ....++..+.-|.-+|-.++++++
T Consensus 4 ~~~~R~~HW~~a~~~-i~l~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~l~l 64 (211)
T TIGR02125 4 SAPVRLFHWVRALAI-FVLIVTGFYIAYPFLSPPSGEAVHFLQGYIRFVHFAAGFVLIAVLL 64 (211)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHHHcCCCcCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556699888877 666666654321111100010 111345677889998877666554
No 61
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=22.35 E-value=79 Score=28.24 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=18.1
Q ss_pred ecCchhHHHHhhCCC-chhhHHhhhh-HHHHhhcCC--CCc
Q 028726 92 SIAPLPLLFDAALPG-AGTVRALFGP-FVELVKSWN--LPD 128 (205)
Q Consensus 92 s~~~~p~~~~a~~~g-~~~l~~~leP-ia~~frsl~--LPE 128 (205)
+..-||+++....-+ ---+...+=| ++..|.+++ +|-
T Consensus 162 ~al~YP~~ll~~~~~v~~~~~~~vlP~f~~~~~~~~~~lP~ 202 (399)
T PRK10573 162 KALRYPLIILAVALLVVLAMLHFVLPEFAAIYRSFNTPLPL 202 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCCCCCCH
Confidence 333356665444444 2223333344 455777766 553
No 62
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.20 E-value=2.9e+02 Score=22.58 Aligned_cols=31 Identities=19% Similarity=0.064 Sum_probs=22.2
Q ss_pred HhhhhchhhHHHHHHHHHHhhhhhhhHHhhC
Q 028726 168 KAKDLHPKLLGGMFFFFALGATGGITSLLTS 198 (205)
Q Consensus 168 K~r~rH~QLgs~LLaFMVLG~iGGMlSLvmQ 198 (205)
.+...|--+|-.-+.++.+=++.|+.+....
T Consensus 73 hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P 103 (143)
T cd08763 73 DMYSLHSWCGILTFVLYFLQWLIGFSFFLFP 103 (143)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566777778888888888888887775443
No 63
>PF04973 NMN_transporter: Nicotinamide mononucleotide transporter; InterPro: IPR006419 The PnuC protein of Escherichia coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see IPR006417 from INTERPRO). The extreme N- and C-terminal regions are poorly conserved. ; GO: 0006810 transport, 0016020 membrane
Probab=22.05 E-value=63 Score=26.15 Aligned_cols=61 Identities=23% Similarity=0.206 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHHhh-CCCCC
Q 028726 141 VVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLT-SDKPI 202 (205)
Q Consensus 141 wVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSLvm-Q~kPI 202 (205)
...+.|..|+-| =|+-++.++.|.+.|.-.+..-+..+.....+.+..|=++..+. +..|.
T Consensus 53 ~~~~~~~i~G~~-~W~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (181)
T PF04973_consen 53 LFYFIMSIYGWY-QWKKGRDENDEVKVRRLSKKQWILLLIGILIGTAIFGFILKFLTDSPFPW 114 (181)
T ss_pred HHHHHHHHHHHH-HHHhhhccCcccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 455567777665 46622224455554333333334444444445555555555444 33343
No 64
>TIGR00351 narI respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160).
Probab=21.92 E-value=99 Score=26.71 Aligned_cols=78 Identities=13% Similarity=-0.006 Sum_probs=42.8
Q ss_pred hhhHHhhhhHHHHhhcCCCCchhhhhhhhHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHh
Q 028726 108 GTVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALG 187 (205)
Q Consensus 108 ~~l~~~lePia~~frsl~LPE~IkhwGHPlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG 187 (205)
.-+..++.|. .+...+ +||..+|+.= ...|. +.++...++-++.=+||-.++++|.......+-+..++++.++.|
T Consensus 64 gH~~g~l~p~-~~~~~~-~~~~~~~~~a-~~~G~-~aGi~~liGl~~Ll~RRl~~~~vr~~s~~~D~~~L~lLl~i~~tG 139 (224)
T TIGR00351 64 GHFFGMLTPH-WMYAAW-LPIEVKQKMA-MFAGG-ASGVLCLIGGVLLLKRRLFSPRVRATSTGADILILSLLLIQCLLG 139 (224)
T ss_pred HHHHHhccch-HHHHhc-CcHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 3455788886 444444 8888777652 11111 222223333445556888788888544444455555555555555
Q ss_pred hh
Q 028726 188 AT 189 (205)
Q Consensus 188 ~i 189 (205)
..
T Consensus 140 l~ 141 (224)
T TIGR00351 140 LL 141 (224)
T ss_pred HH
Confidence 43
No 65
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=21.86 E-value=30 Score=27.81 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchh
Q 028726 140 AVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPK 175 (205)
Q Consensus 140 awVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~Q 175 (205)
|++..+.-+|+.|.-+|-| +|||=|.|-+.++.+
T Consensus 4 g~a~~~~lgYciYFD~KRR--~dP~frkkL~~rrk~ 37 (121)
T PF02064_consen 4 GVAAAAFLGYCIYFDYKRR--SDPDFRKKLRERRKK 37 (121)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHhhcccccc--cChHHHHHHHHHHHH
Confidence 4555666778888766654 788888766666554
No 66
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=21.77 E-value=1.5e+02 Score=28.26 Aligned_cols=45 Identities=20% Similarity=0.062 Sum_probs=34.3
Q ss_pred HHHHHHhhhceeeeee--CCHHHHHHhhhhchhhHHHHHHHHHHhhh
Q 028726 145 AMGGYGTYLGFCIRYS--DDMEEKAKAKDLHPKLLGGMFFFFALGAT 189 (205)
Q Consensus 145 AmG~YA~YLGwQiRrt--ad~Evk~K~r~rH~QLgs~LLaFMVLG~i 189 (205)
++|..+.-||+||... +|+..--|.-.+.++.|-+++.=+|++++
T Consensus 299 ~lg~~~~~L~~~i~~vdiDnp~dC~k~f~sN~ntGli~~~~i~~d~l 345 (353)
T KOG1381|consen 299 ALGAVAARLGSQIYKVDIDNPSDCWKKFKSNSNTGLILFSGIVLDTL 345 (353)
T ss_pred HHHHHHHHHHhheeeeecCChHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 3788888999999988 56655544444556889999999999875
No 67
>MTH00015 ND6 NADH dehydrogenase subunit 6; Validated
Probab=21.74 E-value=2.2e+02 Score=22.91 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=28.2
Q ss_pred hhhhhHHHHHHHHHHHHHHh-hhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHH
Q 028726 132 HWGHPGNMAVVLFAMGGYGT-YLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSL 195 (205)
Q Consensus 132 hwGHPlmMawVLLAmG~YA~-YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSL 195 (205)
.-.||+.||..++..+.... .+|.. .-+|.-..+.+=++|||+=+
T Consensus 19 ~~~~Pl~mg~~li~~tl~~~~~~~~~-------------------~~sW~syilfLI~iGGmLVl 64 (155)
T MTH00015 19 LATTPITLGINILMMALLLATTMASA-------------------LSSWFAFLTFLIYVGGMLVM 64 (155)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHhHHHHH
Confidence 45799999999887776554 33321 12255555555677887644
No 68
>COG1971 Predicted membrane protein [Function unknown]
Probab=21.34 E-value=1.1e+02 Score=26.83 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=41.2
Q ss_pred hhHHhhhhHHHHhhcCCCCchhhhhhhhHHHHHHHHHHHHHHhhhceeee
Q 028726 109 TVRALFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFCIR 158 (205)
Q Consensus 109 ~l~~~lePia~~frsl~LPE~IkhwGHPlmMawVLLAmG~YA~YLGwQiR 158 (205)
.+-+.+.|.+-|+-..-++..|.+|-|=+-- ..|..+|.|..|-|+|-+
T Consensus 44 G~f~~i~pliG~~~g~~~s~~i~~~~~wigf-~lL~~lG~~mI~e~f~~~ 92 (190)
T COG1971 44 GVFQAIMPLIGWFIGKFLSTFIAEWAHWIGF-VLLIILGLKMIIEGFKNE 92 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhchh
Confidence 4567888999999998899888888886555 788899999999999874
No 69
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=21.06 E-value=1.4e+02 Score=18.52 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=19.1
Q ss_pred HHHhhhhchhhHHHHHHHHHH-hhhhhhh
Q 028726 166 KAKAKDLHPKLLGGMFFFFAL-GATGGIT 193 (205)
Q Consensus 166 k~K~r~rH~QLgs~LLaFMVL-G~iGGMl 193 (205)
|+..++-|.-+|-+...++.+ +.+|..+
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~l 30 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGALL 30 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999887776655 4444444
No 70
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=20.83 E-value=2.6e+02 Score=22.19 Aligned_cols=56 Identities=11% Similarity=0.010 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhHHHHHHHHHHhhhhhhhHHhhCCCCC
Q 028726 138 NMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPI 202 (205)
Q Consensus 138 mMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLgs~LLaFMVLG~iGGMlSLvmQ~kPI 202 (205)
||+|+.+.+++..-..|=-. -|+.+.+.+...+.+.+...+.-=-.+|++++.-|+
T Consensus 1 ~m~wl~L~~Ai~~Ev~~t~~---------LK~s~g~~~~~~~~~~i~~~~~sf~~ls~al~~lpl 56 (120)
T PRK10452 1 MIYWILLALAIATEITGTLS---------MKWASVSEGNGGFILMLVMISLSYIFLSFAVKKIAL 56 (120)
T ss_pred CchHHHHHHHHHHHHHHHHH---------HHhhccCCCcHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 68899998887654333111 122221223333333333333334467777776664
No 71
>PRK01318 membrane protein insertase; Provisional
Probab=20.20 E-value=2e+02 Score=28.06 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=40.3
Q ss_pred hCCCchhhHHhhhhHHHHhhcCCCCchhhhhhh-----hHHHHHHHHHHHHHHhhhceeeeeeCCHHHHHHhhhhchhhH
Q 028726 103 ALPGAGTVRALFGPFVELVKSWNLPDWLVHWGH-----PGNMAVVLFAMGGYGTYLGFCIRYSDDMEEKAKAKDLHPKLL 177 (205)
Q Consensus 103 ~~~g~~~l~~~lePia~~frsl~LPE~IkhwGH-----PlmMawVLLAmG~YA~YLGwQiRrtad~Evk~K~r~rH~QLg 177 (205)
++..+..++. +|+.-||.+|..|+|. +.= |++||...+. -..++-+ ..|+-++. =-++.
T Consensus 408 ~l~~~~el~~--~~fl~Wi~DLs~~Dp~--~il~~~~lPil~~~~~~~----~~~l~~~---~~~~~q~k-----im~~m 471 (521)
T PRK01318 408 VLLVSIELRH--APFIGWIHDLSAPDPY--FILHIGLLPILMGITMFL----QQKLNPT---PTDPMQAK-----IMKFM 471 (521)
T ss_pred HHHHHHHhcc--Cchheeeccccccccc--hhHHHHHHHHHHHHHHHH----HHHhcCC---CCCHHHHH-----HHHHH
Confidence 3444444443 5777799999999874 333 6666443322 1122211 13443322 23468
Q ss_pred HHHHHHHHHhhhhhh
Q 028726 178 GGMFFFFALGATGGI 192 (205)
Q Consensus 178 s~LLaFMVLG~iGGM 192 (205)
+++++||....=.|+
T Consensus 472 pi~~~~~~~~~PagL 486 (521)
T PRK01318 472 PLIFTFFFLSFPAGL 486 (521)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888777655553
Done!