Query 028726
Match_columns 205
No_of_seqs 76 out of 78
Neff 2.4
Searched_HMMs 13730
Date Tue Mar 26 18:17:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028726.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2220-2223//hhsearch_scop/028726hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l8na1 c.1.8.10 (A:143-678) a 22.2 22 0.0016 14.2 2.1 33 105-137 417-450 (536)
2 d1h41a1 c.1.8.10 (A:152-712) a 19.8 25 0.0019 13.9 2.4 34 104-137 411-445 (561)
3 d1s3si_ d.15.1.2 (I:) p47 {Rat 12.1 21 0.0015 14.4 -0.1 22 153-174 20-41 (50)
4 d2axtj1 f.23.32.1 (J:7-40) Pho 10.6 46 0.0034 12.5 2.3 30 126-156 2-31 (34)
5 d2hkua2 a.121.1.1 (A:88-208) P 5.2 58 0.0042 11.9 -0.3 41 91-132 80-120 (121)
6 d1jb0k_ f.30.1.1 (K:) Photosys 5.0 87 0.0063 11.0 1.1 25 118-142 29-55 (58)
7 d2qtia1 a.284.1.1 (A:8-72) Unc 4.6 94 0.0068 10.8 1.2 13 177-189 21-33 (65)
8 d2otaa1 a.284.1.1 (A:7-68) Hyp 4.3 98 0.0072 10.7 1.2 13 177-189 22-34 (62)
9 d1o0sa2 c.58.1.3 (A:2-295) Mit 4.2 85 0.0062 11.0 -0.1 44 115-159 156-212 (294)
10 d2jrxa1 a.284.1.1 (A:1-75) Unc 3.8 1.1E+02 0.0079 10.4 1.2 9 181-189 32-40 (75)
No 1
>d1l8na1 c.1.8.10 (A:143-678) alpha-D-glucuronidase catalytic domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=22.23 E-value=22 Score=14.20 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q ss_conf 9812257765359998501798-81122100047
Q 028726 105 PGAGTVRALFGPFVELVKSWNL-PDWLVHWGHPG 137 (205)
Q Consensus 105 ~g~~~l~~~lePia~~frsl~L-PE~IkhfGHPl 137 (205)
-|+....+|-.|+++.|.+++- ||.+.-|+|-+
T Consensus 417 tGtg~~~QY~~~~a~~ye~~~tcPdelLLwFHHV 450 (536)
T d1l8na1 417 TGTGYTAQYFPENAAMYESLDTCPDELLLFFHHV 450 (536)
T ss_dssp TSCCGGGGSCHHHHHHHHSTTTSCGGGHHHHCCE
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCCHHHHEECCCC
T ss_conf 8889500279689987178033945673000148
No 2
>d1h41a1 c.1.8.10 (A:152-712) alpha-D-glucuronidase catalytic domain {Pseudomonas cellulosa [TaxId: 155077]}
Probab=19.76 E-value=25 Score=13.90 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q ss_conf 79812257765359998501798-81122100047
Q 028726 104 LPGAGTVRALFGPFVELVKSWNL-PDWLVHWGHPG 137 (205)
Q Consensus 104 ~~g~~~l~~~lePia~~frsl~L-PE~IkhfGHPl 137 (205)
.-|+....+|-.|+++.|.+++- ||.+.-|+|-+
T Consensus 411 ~tGtg~~~QY~~~~a~~ye~~~tcPdelLLwFHHV 445 (561)
T d1h41a1 411 KTGSNALAQYPEPIAKAWGDLNSVPEDLILWFHHL 445 (561)
T ss_dssp TTTTCGGGGSCHHHHHHHHSTTTSCGGGGGGTCCE
T ss_pred CCCCCCHHCCCHHHHHHHCCCCCCCHHHHHHHCCC
T ss_conf 88888501279799997278023946774100148
No 3
>d1s3si_ d.15.1.2 (I:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.13 E-value=21 Score=14.40 Aligned_cols=22 Identities=23% Similarity=0.148 Sum_probs=16.2
Q ss_pred HCEEEEEECCHHHHHHHHHHCH
Q ss_conf 5031556089888788665140
Q 028726 153 LGFCIRYSDDMEEKAKAKDLHP 174 (205)
Q Consensus 153 LGwQiRrtad~Evk~K~r~rH~ 174 (205)
.-+|+|+.+..-..++||..|.
T Consensus 20 T~iQiRL~dG~R~v~rFN~~Ht 41 (50)
T d1s3si_ 20 TNIQIRLADGGRLVQKFNHSHR 41 (50)
T ss_dssp ------------------CCCC
T ss_pred EEEEEEECCCCEEEEECCCCCC
T ss_conf 6899994799788898068669
No 4
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.61 E-value=46 Score=12.48 Aligned_cols=30 Identities=27% Similarity=0.510 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCEE
Q ss_conf 8811221000478999999998877555031
Q 028726 126 LPDWLVHWGHPGNMAVVLFAMGGYGTYLGFC 156 (205)
Q Consensus 126 LPE~IkhfGHPlmMawVLLAmG~YA~YLGwQ 156 (205)
||-|++--.-.+.. +.++.+=.|++|.|.-
T Consensus 2 iPLWlv~tv~G~~v-i~~vG~FfYGsYsGlG 31 (34)
T d2axtj1 2 IPLWIVATVAGMGV-IVIVGLFFYGAYAGLG 31 (34)
T ss_dssp CCHHHHHHHHHHHH-HHHHHHHHHHTTTSTT
T ss_pred CCEEEEEEHHHHHH-HHHEEEEEEEEECCCC
T ss_conf 74797653001306-7520123444003446
No 5
>d2hkua2 a.121.1.1 (A:88-208) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=5.20 E-value=58 Score=11.94 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=27.6
Q ss_pred EECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 003733478874179812257765359998501798811221
Q 028726 91 YSIAPLPLLFDAALPGAGTVRALFGPFVELVKSWNLPDWLVH 132 (205)
Q Consensus 91 ~s~~~~p~~~~a~~~g~~~l~~~lePia~~frsl~LPE~Ikh 132 (205)
.|.+ +-+.+-...-|...=.++-+-.|-.|.++.|||.+.+
T Consensus 80 WSaa-fG~Vlq~~a~g~sfgysle~avavif~~lqip~~v~~ 120 (121)
T d2hkua2 80 WSAI-FGLVIQKTATGESFGYSLEEAVAVIFANLQIPETVRN 120 (121)
T ss_dssp HHHH-HHHHHHHHHTTSCTTCSHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHH-HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHC
T ss_conf 9999-9999984421320044399999999970568477605
No 6
>d1jb0k_ f.30.1.1 (K:) Photosystem I reaction center subunit X, PsaK {Synechococcus elongatus [TaxId: 32046]}
Probab=5.03 E-value=87 Score=10.97 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=17.2
Q ss_pred HHHHHCCCCCCHHH--HHHHHHHHHHH
Q ss_conf 99850179881122--10004789999
Q 028726 118 VELVKSWNLPDWLV--HWGHPGNMAVV 142 (205)
Q Consensus 118 a~~frsl~LPE~Ik--hfGHPlmMawV 142 (205)
.+.|..+++||-+- .|||=+=+|.+
T Consensus 29 p~~fgg~g~~~lLat~s~GHilG~G~I 55 (58)
T d1jb0k_ 29 PALFEGFGLPELLATTSFGHLLAAGVV 55 (58)
T ss_dssp -------CCTTGGGHHHHHHHHHHHHT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 666068878999998557878744465
No 7
>d2qtia1 a.284.1.1 (A:8-72) Uncharacterized protein SO2176 {Shewanella oneidensis [TaxId: 70863]}
Probab=4.56 E-value=94 Score=10.77 Aligned_cols=13 Identities=23% Similarity=0.209 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 7799999997443
Q 028726 177 LGGMFFFFALGAT 189 (205)
Q Consensus 177 gs~LLaFMVLG~i 189 (205)
+|-=|.+||||.+
T Consensus 21 Ap~DLSLMvLGN~ 33 (65)
T d2qtia1 21 APTDLSLMALGNC 33 (65)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
T ss_conf 9810799999899
No 8
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=4.31 E-value=98 Score=10.66 Aligned_cols=13 Identities=15% Similarity=0.278 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 7799999997443
Q 028726 177 LGGMFFFFALGAT 189 (205)
Q Consensus 177 gs~LLaFMVLG~i 189 (205)
+|-=|.+||||.+
T Consensus 22 Ap~DLSLMvLGN~ 34 (62)
T d2otaa1 22 VTPDLALMCLGNA 34 (62)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
T ss_conf 9840599999799
No 9
>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Probab=4.19 E-value=85 Score=11.02 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=26.3
Q ss_pred HHHHHHHHCCCCCC--HHH-----------HHHHHHHHHHHHHHHHHHHHHHCEEEEE
Q ss_conf 35999850179881--122-----------1000478999999998877555031556
Q 028726 115 GPFVELVKSWNLPD--WLV-----------HWGHPGNMAVVLFAMGGYGTYLGFCIRY 159 (205)
Q Consensus 115 ePia~~frsl~LPE--~Ik-----------hfGHPlmMawVLLAmG~YA~YLGwQiRr 159 (205)
+-+.+..+++.-++ -|+ .||--+ |++.+=-+..|.++-|+.-++
T Consensus 156 g~i~~il~nwp~~~V~~iVVTDG~rILGlGDlG~~G-m~I~~GKl~lyta~~Gi~P~~ 212 (294)
T d1o0sa2 156 SKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYG-IGIPVGKLALYVALGGVQPKW 212 (294)
T ss_dssp HHHHHHHTTSSCSCCCEEEEECSSCBTTTBCCGGGG-GHHHHHHHHHHHHHHCCCGGG
T ss_pred CHHHHHHHCCCCCCCEEEEEECCCCEECCCCCCCCC-CHHHHHHHHHHHHHCCCCHHH
T ss_conf 449999862874561399995572043156768663-304664899998726998654
No 10
>d2jrxa1 a.284.1.1 (A:1-75) Uncharacterized protein YejL {Escherichia coli [TaxId: 562]}
Probab=3.78 E-value=1.1e+02 Score=10.42 Aligned_cols=9 Identities=22% Similarity=0.467 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q ss_conf 999997443
Q 028726 181 FFFFALGAT 189 (205)
Q Consensus 181 LaFMVLG~i 189 (205)
|.+||||.+
T Consensus 32 LSLMvLGN~ 40 (75)
T d2jrxa1 32 LSLMVLGNM 40 (75)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 599999899
Done!