BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028727
(205 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6BX14|DPB3_DEBHA DNA polymerase epsilon subunit C OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB3 PE=3 SV=1
Length = 277
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 107 CNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKH 166
+ P+ +IK+IFK + + AV+ AT+ F++ F E + D++K L YK
Sbjct: 90 LSLPLSKIKKIFKMDPDYLAASQSAVYATGLATELFIQYFTEQSLVLAKMDKRKKLQYKD 149
Query: 167 LAAVVSEQSKYDFLSDYVP 185
+ V+ Q +FLSD VP
Sbjct: 150 FSNAVASQDSLNFLSDTVP 168
>sp|P79007|HAP5_SCHPO Transcriptional activator hap5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap5 PE=2 SV=1
Length = 415
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 98 DDDDEVSKVCNFPMGRIKRIFKTQSSDI---GITGEAVFLVNKATDKFLEQFCEDAYECC 154
+ DD+ K + P+ RIK++ KT D+ I+ EA FL K ++ F+ + A+
Sbjct: 98 EHDDQAVKTLHLPLARIKKVMKT-DDDVKNKMISAEAPFLFAKGSEIFIAELTMRAWLHA 156
Query: 155 AKDRKKSLAYKHLAAVVSEQSKYDFLSDYV 184
K+++++L +A VS+ YDFL D +
Sbjct: 157 KKNQRRTLQRSDIANAVSKSEMYDFLIDII 186
>sp|Q9JKP8|CHRC1_MOUSE Chromatin accessibility complex protein 1 OS=Mus musculus GN=Chrac1
PE=1 SV=1
Length = 129
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAY 164
++ + P+ RI+ I K+ I EA+ L KAT+ F++ +Y + KK+L Y
Sbjct: 15 RLVSLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQYLATCSYRHGSGKAKKALTY 74
Query: 165 KHLAAVVSEQSKYDFLSDYVPEKIKAEDAL 194
LA+ + FL+D +P+KI A L
Sbjct: 75 SDLASTAEDSETLQFLADILPKKILASKYL 104
>sp|Q9NRG0|CHRC1_HUMAN Chromatin accessibility complex protein 1 OS=Homo sapiens GN=CHRAC1
PE=1 SV=1
Length = 131
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%)
Query: 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAY 164
++ + P+ RI+ I K+ I EA+ L KAT+ F++ +Y + KK L Y
Sbjct: 15 RLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTY 74
Query: 165 KHLAAVVSEQSKYDFLSDYVPEKIKAEDAL 194
LA + + FL+D +P+KI A L
Sbjct: 75 SDLANTAQQSETFQFLADILPKKILASKYL 104
>sp|Q9FMV5|NFYC4_ARATH Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana
GN=NFYC4 PE=2 SV=1
Length = 250
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 102 EVSKVCNF-----PMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAK 156
E+ +V +F P+ RIK+I K I+ EA L KA + F+ + ++ +
Sbjct: 67 EIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEE 126
Query: 157 DRKKSLAYKHLAAVVSEQSKYDFLSDYVP-EKIKAEDALAQRELAEGGEG 205
+++++L +AA ++ +DFL D VP E+IK E+ A A GG G
Sbjct: 127 NKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAAS---ALGGGG 173
>sp|Q62725|NFYC_RAT Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus
GN=Nfyc PE=2 SV=1
Length = 335
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAY 164
+V P+ RIK+I K I+ EA L KA F+ + A+ +++++L
Sbjct: 39 RVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQR 98
Query: 165 KHLAAVVSEQSKYDFLSDYVP 185
+A +++ ++DFL D VP
Sbjct: 99 NDIAMAITKFDQFDFLIDIVP 119
>sp|P70353|NFYC_MOUSE Nuclear transcription factor Y subunit gamma OS=Mus musculus
GN=Nfyc PE=2 SV=2
Length = 335
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAY 164
+V P+ RIK+I K I+ EA L KA F+ + A+ +++++L
Sbjct: 39 RVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQR 98
Query: 165 KHLAAVVSEQSKYDFLSDYVP 185
+A +++ ++DFL D VP
Sbjct: 99 NDIAMAITKFDQFDFLIDIVP 119
>sp|Q5RA23|NFYC_PONAB Nuclear transcription factor Y subunit gamma OS=Pongo abelii
GN=NFYC PE=2 SV=1
Length = 335
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAY 164
+V P+ RIK+I K I+ EA L KA F+ + A+ +++++L
Sbjct: 39 RVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQR 98
Query: 165 KHLAAVVSEQSKYDFLSDYVP 185
+A +++ ++DFL D VP
Sbjct: 99 NDIAMAITKFDQFDFLIDIVP 119
>sp|Q5E9X1|NFYC_BOVIN Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC
PE=2 SV=1
Length = 335
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAY 164
+V P+ RIK+I K I+ EA L KA F+ + A+ +++++L
Sbjct: 39 RVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQR 98
Query: 165 KHLAAVVSEQSKYDFLSDYVP 185
+A +++ ++DFL D VP
Sbjct: 99 NDIAMAITKFDQFDFLIDIVP 119
>sp|Q9NR33|DPOE4_HUMAN DNA polymerase epsilon subunit 4 OS=Homo sapiens GN=POLE4 PE=1 SV=2
Length = 117
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 104 SKVCNFPMGRIKRIFKTQSSDIGITG-EAVFLVNKATDKFLEQFCEDAYECCAKDRKKSL 162
+++ P+ R+K + K D+ + G EA+F++ +A + F+E +DAY C + ++K+L
Sbjct: 36 ARLSRLPLARVKALVKA-DPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTL 94
Query: 163 AYKHLAAVVSEQSKYDFL 180
+ L + ++ FL
Sbjct: 95 QRRDLDNAIEAVDEFAFL 112
>sp|Q13952|NFYC_HUMAN Nuclear transcription factor Y subunit gamma OS=Homo sapiens
GN=NFYC PE=1 SV=3
Length = 458
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAY 164
+V P+ RIK+I K I+ EA L KA F+ + A+ +++++L
Sbjct: 39 RVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQR 98
Query: 165 KHLAAVVSEQSKYDFLSDYVP 185
+A +++ ++DFL D VP
Sbjct: 99 NDIAMAITKFDQFDFLIDIVP 119
>sp|A6QQ14|DPOE4_BOVIN DNA polymerase epsilon subunit 4 OS=Bos taurus GN=POLE4 PE=3 SV=1
Length = 116
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 104 SKVCNFPMGRIKRIFKTQSSDIGITG-EAVFLVNKATDKFLEQFCEDAYECCAKDRKKSL 162
+++ P+ R+K + K D+ + G EA+F++ +A + F+E +DAY C + ++K+L
Sbjct: 35 ARLSRLPLARVKALVKA-DPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTL 93
Query: 163 AYKHLAAVVSEQSKYDFL 180
+ L + ++ FL
Sbjct: 94 QRRDLDNAIEAVDEFAFL 111
>sp|Q9CQ36|DPOE4_MOUSE DNA polymerase epsilon subunit 4 OS=Mus musculus GN=Pole4 PE=3 SV=1
Length = 118
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 105 KVCNFPMGRIKRIFKTQSSDIGITG-EAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLA 163
++ P+ R+K + K D+ + G EA+F++ +A + F+E +DAY C + ++K+L
Sbjct: 38 RLSRLPLARVKALVKA-DPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQ 96
Query: 164 YKHLAAVVSEQSKYDFL 180
+ L + ++ FL
Sbjct: 97 RRDLDNAIEAVDEFAFL 113
>sp|Q9SMP0|NFYC1_ARATH Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana
GN=NFYC1 PE=1 SV=1
Length = 234
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 102 EVSKVCNF-----PMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAK 156
E+ +V +F P+ RIK+I K I+ EA L KA + F+ + ++ +
Sbjct: 54 EIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEE 113
Query: 157 DRKKSLAYKHLAAVVSEQSKYDFLSDYVP-EKIKAEDAL 194
+++++L +AA ++ +DFL D VP ++IK E A+
Sbjct: 114 NKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAV 152
>sp|A0JPP1|NC2A_RAT Dr1-associated corepressor OS=Rattus norvegicus GN=Drap1 PE=2 SV=1
Length = 205
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 109 FPMGRIKRIFKTQSSDIGITGEAV-FLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167
FP RIK+I +T +IG AV ++++A + FLE + A + K++ HL
Sbjct: 12 FPPARIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 70
Query: 168 AAVVSEQSKYDFLSDYV 184
+ + ++DFL D V
Sbjct: 71 KQCIELEQQFDFLKDLV 87
>sp|Q14919|NC2A_HUMAN Dr1-associated corepressor OS=Homo sapiens GN=DRAP1 PE=1 SV=3
Length = 205
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 109 FPMGRIKRIFKTQSSDIGITGEAV-FLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167
FP RIK+I +T +IG AV ++++A + FLE + A + K++ HL
Sbjct: 12 FPPARIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 70
Query: 168 AAVVSEQSKYDFLSDYV 184
+ + ++DFL D V
Sbjct: 71 KQCIELEQQFDFLKDLV 87
>sp|Q2YDP3|NC2A_BOVIN Dr1-associated corepressor OS=Bos taurus GN=DRAP1 PE=2 SV=1
Length = 205
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 109 FPMGRIKRIFKTQSSDIGITGEAV-FLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167
FP RIK+I +T +IG AV ++++A + FLE + A + K++ HL
Sbjct: 12 FPPARIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 70
Query: 168 AAVVSEQSKYDFLSDYV 184
+ + ++DFL D V
Sbjct: 71 KQCIELEQQFDFLKDLV 87
>sp|Q9D6N5|NC2A_MOUSE Dr1-associated corepressor OS=Mus musculus GN=Drap1 PE=2 SV=3
Length = 205
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 109 FPMGRIKRIFKTQSSDIGITGEAV-FLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167
FP RIK+I +T +IG AV ++++A + FLE + A + K++ HL
Sbjct: 12 FPPARIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 70
Query: 168 AAVVSEQSKYDFLSDYV 184
+ + ++DFL D V
Sbjct: 71 KQCIELEQQFDFLKDLV 87
>sp|C6Y4D0|YCGV_SCHPO Putative transcription factor C16C4.22 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC16C4.22 PE=3 SV=1
Length = 87
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 109 FPMGRIKRIFKTQSSDIGITGEA-VFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167
P+ R+KRI K Q D+ A L++ AT+ F+E+ +AY+ ++K + Y+ +
Sbjct: 10 LPLSRVKRIIK-QDEDVHYCSNASALLISVATELFVEKLATEAYQLAKLQKRKGIRYRDV 68
Query: 168 AAVVSEQSKYDFLSD 182
VV + +++FLSD
Sbjct: 69 EDVVRKDDQFEFLSD 83
>sp|Q02516|HAP5_YEAST Transcriptional activator HAP5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP5 PE=1 SV=1
Length = 242
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 78 QEATNEKKKKPNKNGKKIERDDDDEVSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNK 137
QE NE + N+ G E DD K + P RI+++ KT I+ EA + K
Sbjct: 135 QELINEIEST-NEPGS--EHQDD---FKSHSLPFARIRKVMKTDEDVKMISAEAPIIFAK 188
Query: 138 ATDKFLEQFCEDAYECCAKDRKKSLAYKHLAAVVSEQSKYDFLSDYVPEK 187
A + F+ + A+ ++++++L +A + + +DFL D VP +
Sbjct: 189 ACEIFITELTMRAWCVAERNKRRTLQKADIAEALQKSDMFDFLIDVVPRR 238
>sp|Q9FGP6|NFYC5_ARATH Nuclear transcription factor Y subunit C-5 OS=Arabidopsis thaliana
GN=NFYC5 PE=2 SV=1
Length = 186
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 109 FPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLA 168
FP+ RIKRI K I EA L++KA + F+ ++ + + ++ +
Sbjct: 37 FPISRIKRIMKFDPDVSMIAAEAPNLLSKACEMFVMDLTMRSWLHAQESNRLTIRKSDVD 96
Query: 169 AVVSEQSKYDFLSDYVP 185
AVVS+ +DFL D VP
Sbjct: 97 AVVSQTVIFDFLRDDVP 113
>sp|Q9ZVL3|NFYC3_ARATH Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana
GN=NFYC3 PE=2 SV=1
Length = 217
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 102 EVSKVCNF-----PMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAK 156
E+ K +F P+ RIK+I K I+ EA + +A + F+ + ++ +
Sbjct: 59 EIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEE 118
Query: 157 DRKKSLAYKHLAAVVSEQSKYDFLSDYVP 185
+++++L +AA V+ +DFL D VP
Sbjct: 119 NKRRTLQKNDIAAAVTRTDIFDFLVDIVP 147
>sp|Q8L4B2|NFYC9_ARATH Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana
GN=NFYC9 PE=2 SV=1
Length = 231
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 102 EVSKVCNF-----PMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAK 156
E+ K +F P+ RIK+I K I+ EA + +A + F+ + ++ +
Sbjct: 69 EIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEE 128
Query: 157 DRKKSLAYKHLAAVVSEQSKYDFLSDYVP 185
+++++L +AA V+ +DFL D VP
Sbjct: 129 NKRRTLQKNDIAAAVTRTDIFDFLVDIVP 157
>sp|Q10315|DPB3_SCHPO DNA polymerase epsilon subunit C OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb3 PE=1 SV=1
Length = 199
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 109 FPMGRIKRIFKTQSSDIGITGEAV-FLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167
FP+ RIK+I + D+G + +++KA + F++ +++ + + K + HL
Sbjct: 24 FPVARIKKIMQA-DQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVSHL 82
Query: 168 AAVVSEQSKYDFLSDYV 184
V ++DFL D V
Sbjct: 83 KHAVQSVEQFDFLQDIV 99
>sp|Q2N2K6|CENPA_TETTS Histone H3-like centromeric protein CNA1 OS=Tetrahymena thermophila
(strain SB210) GN=CNA1 PE=3 SV=1
Length = 187
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 109 FPMGRIKRIFKTQSSD---IGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYK 165
P R+ R T+ ++ + T A+ L+ + ++ F EDA C ++ +L K
Sbjct: 105 LPFQRLIREISTRMTEEDSLRWTSFALVLLQTVVEDYMVSFFEDANACALHAKRVTLMSK 164
Query: 166 HLAAVVSEQSKYDFLSDYVPEK 187
LA + + + ++P K
Sbjct: 165 DLALAARIRGQKNVTGIFIPTK 186
>sp|Q9SGE3|H2B2_ARATH Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170 PE=2 SV=1
Length = 243
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 30/58 (51%)
Query: 114 IKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLAAVV 171
+ ++ K D+GIT +A+ +VN E+ ++A ++++L+ + + A V
Sbjct: 155 VYKVMKQVHPDLGITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAV 212
>sp|Q9EQZ7|RIMS2_MOUSE Regulating synaptic membrane exocytosis protein 2 OS=Mus musculus
GN=Rims2 PE=1 SV=1
Length = 1530
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 6 KRKEEKAKLKN----AETRKKAKPSPKKPKQSNKKTAIQNGTVSESKDEVVVTPASSSIN 61
KR++ + L+N ++ + +P P +P +S K ++ ++S S++E+ TP +S +
Sbjct: 510 KREKMETMLRNDSLSSDQSESVRPPPPRPHKSKKGGKMRQVSLSSSEEELASTPEYTSCD 569
Query: 62 DSQQDSETEQE 72
D + +SE+ E
Sbjct: 570 DVELESESVSE 580
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.304 0.122 0.322
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,286,791
Number of Sequences: 539616
Number of extensions: 2917074
Number of successful extensions: 32710
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 1267
Number of HSP's that attempted gapping in prelim test: 24300
Number of HSP's gapped (non-prelim): 7405
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 58 (26.9 bits)