Query 028727
Match_columns 205
No_of_seqs 114 out of 586
Neff 4.2
Searched_HMMs 29240
Date Tue Mar 26 18:22:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028727.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2220-2223//hhsearch_pdb/028727hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2byk_A Chrac-16; nucleosome sl 1.0 1 1 186.3 7.1 102 100-201 11-113 (140)
2 4g92_C HAPE; transcription fac 1.0 1 1 167.4 9.8 86 101-186 34-119 (119)
3 1jfi_A Transcription regulator 1.0 1 1 163.1 6.8 92 102-193 5-96 (98)
4 1n1j_B NF-YC; histone-like PAI 1.0 1 1 162.9 9.1 87 100-186 11-97 (97)
5 2byk_B Chrac-14; nucleosome sl 1.0 1 1 135.9 6.7 90 104-196 5-95 (128)
6 1n1j_A NF-YB; histone-like PAI 1.0 1 1 127.0 6.9 88 104-194 4-92 (93)
7 1jfi_B DR1 protein, transcript 1.0 1 1 103.2 7.9 92 102-196 9-100 (179)
8 3b0c_W CENP-W, centromere prot 1.0 1 1 92.6 7.7 67 106-173 2-69 (76)
9 1b67_A Protein (histone HMFA); 1.0 1 1 87.6 8.1 65 108-173 2-66 (68)
10 1id3_C Histone H2A.1; nucleoso 1.0 1 1 82.5 6.5 82 101-182 18-99 (131)
No 1
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=1.00 E-value=1 Score=186.27 Aligned_cols=102 Identities=26% Similarity=0.448 Sum_probs=95.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 5456577899827999998409997742266999999999999999999999999-834888545027999860478323
Q 028727 100 DDEVSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECC-AKDRKKSLAYKHLAAVVSEQSKYD 178 (205)
Q Consensus 100 ~~~~~~~~~LPlSRVKrIMK~DpDv~~ISkEA~~lIAKAtELFI~~La~~A~~~A-~~~kRKtI~y~DIa~aV~~~e~fd 178 (205)
+......+.||++|||||||.||++++||++|+++|++|+|+||++|+..||.+| +.++|+||+|+||+.||.+.+.|+
T Consensus 11 s~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~d 90 (140)
T 2byk_A 11 ERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLE 90 (140)
T ss_dssp ------------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTG
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHH
T ss_conf 77753578798799999971585546326789999999999999999999999999855985368999999996386131
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 32125788426999999999860
Q 028727 179 FLSDYVPEKIKAEDALAQRELAE 201 (205)
Q Consensus 179 FL~DiVP~ki~l~ealk~Rk~~~ 201 (205)
||.|+||.+++++++++..+...
T Consensus 91 FL~divP~ki~l~~~~~~~~~~~ 113 (140)
T 2byk_A 91 FLLQIVPQKIRVHQFQEMLRLNR 113 (140)
T ss_dssp GGTTTSCSCC-------------
T ss_pred HHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 67523624346999999998511
No 2
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=1.00 E-value=1 Score=167.44 Aligned_cols=86 Identities=28% Similarity=0.500 Sum_probs=83.0
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 45657789982799999840999774226699999999999999999999999983488854502799986047832332
Q 028727 101 DEVSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLAAVVSEQSKYDFL 180 (205)
Q Consensus 101 ~~~~~~~~LPlSRVKrIMK~DpDv~~ISkEA~~lIAKAtELFI~~La~~A~~~A~~~kRKtI~y~DIa~aV~~~e~fdFL 180 (205)
..+.+...||++||+||||.||++++||++|++++++|+|+||.+|+..|+.+|..++|+||+|+||+.||.+.+.|+||
T Consensus 34 ~~d~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL 113 (119)
T 4g92_C 34 NHDYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFL 113 (119)
T ss_dssp CCCSSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHH
T ss_conf 42445478998999999741976250047899999999999999999999999986345706899999999558653488
Q ss_pred CCCCCC
Q ss_conf 125788
Q 028727 181 SDYVPE 186 (205)
Q Consensus 181 ~DiVP~ 186 (205)
.|+||+
T Consensus 114 ~DiVPk 119 (119)
T 4g92_C 114 IDIVPR 119 (119)
T ss_dssp TTTCC-
T ss_pred HHHCCC
T ss_conf 873789
No 3
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=1.00 E-value=1 Score=163.07 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=86.9
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 56577899827999998409997742266999999999999999999999999834888545027999860478323321
Q 028727 102 EVSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLAAVVSEQSKYDFLS 181 (205)
Q Consensus 102 ~~~~~~~LPlSRVKrIMK~DpDv~~ISkEA~~lIAKAtELFI~~La~~A~~~A~~~kRKtI~y~DIa~aV~~~e~fdFL~ 181 (205)
.....+.||++||+||||.|+++++||++|++++++|+|+|+++|+..||.++..++|++|+|+||..+|.+++.|+||.
T Consensus 5 ~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~ 84 (98)
T 1jfi_A 5 KKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANK 84 (98)
T ss_dssp -----CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC---------
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHCCCHHHHHH
T ss_conf 55668989909999998718400210567999999999999999999999999985987406999999996686266888
Q ss_pred CCCCCCCCHHHH
Q ss_conf 257884269999
Q 028727 182 DYVPEKIKAEDA 193 (205)
Q Consensus 182 DiVP~ki~l~ea 193 (205)
|++|.+|.+..+
T Consensus 85 divp~k~~~~~~ 96 (98)
T 1jfi_A 85 ARKEAELAAATA 96 (98)
T ss_dssp ------------
T ss_pred HCCCHHHHHHHC
T ss_conf 627307666541
No 4
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=1.00 E-value=1 Score=162.86 Aligned_cols=87 Identities=26% Similarity=0.445 Sum_probs=84.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 54565778998279999984099977422669999999999999999999999998348885450279998604783233
Q 028727 100 DDEVSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLAAVVSEQSKYDF 179 (205)
Q Consensus 100 ~~~~~~~~~LPlSRVKrIMK~DpDv~~ISkEA~~lIAKAtELFI~~La~~A~~~A~~~kRKtI~y~DIa~aV~~~e~fdF 179 (205)
...+++.+.||++||+||||.|+++++||++|++++++|+|+||++|+..||.+|..++|+||+|+||..||.+++.|+|
T Consensus 11 ~~~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~F 90 (97)
T 1n1j_B 11 TVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDF 90 (97)
T ss_dssp ---------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGG
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHH
T ss_conf 66785778699899999981596325337689999999999999999999999998748860789999999964867788
Q ss_pred CCCCCCC
Q ss_conf 2125788
Q 028727 180 LSDYVPE 186 (205)
Q Consensus 180 L~DiVP~ 186 (205)
|.|+||+
T Consensus 91 L~divP~ 97 (97)
T 1n1j_B 91 LIDIVPR 97 (97)
T ss_dssp GTTTSCC
T ss_pred HHHHCCC
T ss_conf 8865789
No 5
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=1.00 E-value=1 Score=135.88 Aligned_cols=90 Identities=17% Similarity=0.163 Sum_probs=81.1
Q ss_pred CCCCCCCHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 5778998279999984-099977422669999999999999999999999998348885450279998604783233212
Q 028727 104 SKVCNFPMGRIKRIFK-TQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLAAVVSEQSKYDFLSD 182 (205)
Q Consensus 104 ~~~~~LPlSRVKrIMK-~DpDv~~ISkEA~~lIAKAtELFI~~La~~A~~~A~~~kRKtI~y~DIa~aV~~~e~fdFL~D 182 (205)
...+.||++||+|||| .+|++.+||++|+++|++|+|+||.+|+..|+.+|...+|+||+|+||..++...+.|+||.
T Consensus 5 ~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~- 83 (128)
T 2byk_B 5 IEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVP- 83 (128)
T ss_dssp ------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHH-
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHH-
T ss_conf 1032378889999998758652307799999999999999999999999999870788157999999998758098999-
Q ss_pred CCCCCCCHHHHHHH
Q ss_conf 57884269999999
Q 028727 183 YVPEKIKAEDALAQ 196 (205)
Q Consensus 183 iVP~ki~l~ealk~ 196 (205)
|.++.+.++.+.
T Consensus 84 --~lk~~l~~yr~~ 95 (128)
T 2byk_B 84 --SLTQDLEVYRKV 95 (128)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
T ss_conf --999999999999
No 6
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=1.00 E-value=1 Score=127.01 Aligned_cols=88 Identities=19% Similarity=0.288 Sum_probs=81.3
Q ss_pred CCCCCCCHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 577899827999998409-9977422669999999999999999999999998348885450279998604783233212
Q 028727 104 SKVCNFPMGRIKRIFKTQ-SSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLAAVVSEQSKYDFLSD 182 (205)
Q Consensus 104 ~~~~~LPlSRVKrIMK~D-pDv~~ISkEA~~lIAKAtELFI~~La~~A~~~A~~~kRKtI~y~DIa~aV~~~e~fdFL~D 182 (205)
...+.||+++|+||||.+ |++.+||+||++++++|+|+||.+|+..|+.+|...+|+||+++||..++. .++|+.+
T Consensus 4 ~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~---~l~F~~~ 80 (93)
T 1n1j_A 4 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS---TLGFDSY 80 (93)
T ss_dssp ---CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH---HTTCGGG
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH---HCCCHHH
T ss_conf 3346477659999997717753511799999999999999999999999999881888557999999999---8596746
Q ss_pred CCCCCCCHHHHH
Q ss_conf 578842699999
Q 028727 183 YVPEKIKAEDAL 194 (205)
Q Consensus 183 iVP~ki~l~eal 194 (205)
+.|.+..+.++.
T Consensus 81 i~~~~~~l~~~r 92 (93)
T 1n1j_A 81 VEPLKLYLQKFR 92 (93)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999986
No 7
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=1.00 E-value=1 Score=103.17 Aligned_cols=92 Identities=17% Similarity=0.283 Sum_probs=78.0
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 56577899827999998409997742266999999999999999999999999834888545027999860478323321
Q 028727 102 EVSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLAAVVSEQSKYDFLS 181 (205)
Q Consensus 102 ~~~~~~~LPlSRVKrIMK~DpDv~~ISkEA~~lIAKAtELFI~~La~~A~~~A~~~kRKtI~y~DIa~aV~~~e~fdFL~ 181 (205)
.......||++.|.||||......+||+||..+|.+++++||.+|+..|+..|...+||||.++||..++...+..+|+.
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv~ 88 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYIS 88 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGHH
T ss_pred CCHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHH
T ss_conf 85345546798999999870885602799999999999999999999999999985898578999989988558698999
Q ss_pred CCCCCCCCHHHHHHH
Q ss_conf 257884269999999
Q 028727 182 DYVPEKIKAEDALAQ 196 (205)
Q Consensus 182 DiVP~ki~l~ealk~ 196 (205)
|.+..+..+.+.
T Consensus 89 ---~lk~~L~~yre~ 100 (179)
T 1jfi_B 89 ---EVKEVLQECKTV 100 (179)
T ss_dssp ---HHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHH
T ss_conf ---999999999999
No 8
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=1.00 E-value=1 Score=92.56 Aligned_cols=67 Identities=19% Similarity=0.317 Sum_probs=63.0
Q ss_pred CCCCCHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHC
Q ss_conf 78998279999984-099977422669999999999999999999999998348885450279998604
Q 028727 106 VCNFPMGRIKRIFK-TQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLAAVVSE 173 (205)
Q Consensus 106 ~~~LPlSRVKrIMK-~DpDv~~ISkEA~~lIAKAtELFI~~La~~A~~~A~~~kRKtI~y~DIa~aV~~ 173 (205)
...||+++|+|||| ..|+ ..||++|..+|..++++||++|+..|+..|...+|+||+++||..|+..
T Consensus 2 ~~~LP~A~V~rI~K~~~p~-~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 2 RRTVPRGTLRKIIKKHKPH-LRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp --CCCHHHHHHHHHHHCTT-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 8756520999999874788-8627999999999999999999999999999808998989999999999
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=1.00 E-value=1 Score=87.64 Aligned_cols=65 Identities=15% Similarity=0.281 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHC
Q ss_conf 998279999984099977422669999999999999999999999998348885450279998604
Q 028727 108 NFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLAAVVSE 173 (205)
Q Consensus 108 ~LPlSRVKrIMK~DpDv~~ISkEA~~lIAKAtELFI~~La~~A~~~A~~~kRKtI~y~DIa~aV~~ 173 (205)
.||.++|+||||.. +...||++|+.++++|+|.|+.+|+..|+.+|...+|+||.++||..++..
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCCCCHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 99822899997428-866377999999999999999999999999999939981389999999986
No 10
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=1.00 E-value=1 Score=82.54 Aligned_cols=82 Identities=16% Similarity=0.267 Sum_probs=76.2
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 45657789982799999840999774226699999999999999999999999983488854502799986047832332
Q 028727 101 DEVSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLAAVVSEQSKYDFL 180 (205)
Q Consensus 101 ~~~~~~~~LPlSRVKrIMK~DpDv~~ISkEA~~lIAKAtELFI~~La~~A~~~A~~~kRKtI~y~DIa~aV~~~e~fdFL 180 (205)
-.....+.||++||.|+||.+.....|+..|++.++.+.|.|+..+...|++.|...++++|...||..+|.+++.|+||
T Consensus 18 rS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeEL~~L 97 (131)
T 1id3_C 18 RSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKL 97 (131)
T ss_dssp TTGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHHHHHH
T ss_pred CCCCCCEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHCCHHHHHH
T ss_conf 65657722677999999970532333332069999999999999999999877762598628599999998256999998
Q ss_pred CC
Q ss_conf 12
Q 028727 181 SD 182 (205)
Q Consensus 181 ~D 182 (205)
-.
T Consensus 98 l~ 99 (131)
T 1id3_C 98 LG 99 (131)
T ss_dssp TT
T ss_pred HC
T ss_conf 65
Done!