Query 028729
Match_columns 204
No_of_seqs 163 out of 296
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 18:14:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028729.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2224-2228//hhsearch_pdb/028729hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_R 60S ribosomal protein L 1.0 1 1 556.0 14.7 189 1-189 1-189 (189)
2 3iz5_T 60S ribosomal protein L 1.0 1 1 539.9 18.4 181 1-182 1-181 (209)
3 4a1a_O RPL19, 60S ribosomal pr 1.0 1 1 539.1 14.5 179 1-179 1-179 (185)
4 2zkr_p 60S ribosomal protein L 1.0 1 1 529.0 13.7 189 1-189 1-189 (196)
5 4a17_O RPL19, 60S ribosomal pr 1.0 1 1 508.1 16.9 166 1-166 1-166 (185)
6 1vq8_P 50S ribosomal protein L 1.0 1 1 461.6 13.6 149 1-149 1-149 (149)
7 3j21_Q PFEL19, 50S ribosomal p 1.0 1 1 461.2 14.8 147 1-147 1-147 (150)
8 3jyw_P 60S ribosomal protein L 1.0 1 1 448.0 9.6 158 2-159 1-158 (176)
9 1fme_A FSD-EY peptide; beta-BE 1.0 1 1 17.3 1.2 22 125-146 5-26 (28)
10 2k9u_B Filamin-binding LIM pro 1.0 1 1 16.0 -2.8 11 5-15 4-14 (26)
No 1
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T 3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 4b6a_R 1s1i_P
Probab=1.00 E-value=1 Score=555.95 Aligned_cols=189 Identities=57% Similarity=0.919 Sum_probs=186.4
Q ss_pred CCCCHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 97401467877897416997221195021577753405888962352943304677667358999999985396888788
Q 028729 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (204)
Q Consensus 1 M~~l~~QKRLAA~VL~cGk~kVWlDPne~~eIa~A~sR~~IRkLIkdGlIi~Kp~~~hSr~R~r~~~~ak~kGRh~G~Gk 80 (204)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+||
T Consensus 1 M~~L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~Gk 80 (189)
T 3u5e_R 1 MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGK 80 (189)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGCEECTTCHHHHHTCCSHHHHHHHHTTTSEECCCCCCCCTHHHHHHHHHHHTTCSCSGGG
T ss_pred CCCHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 94218899999999778877040487889899842218999999888876756766777267999999887187899875
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63432348850688999989999999998754999957549998654088655389999999987568988662458999
Q 028729 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (204)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~L~dQae 160 (204)
|+||+|||||+|++||++||+||++|++|||+++||+|+||+||++||||+|+|+++|+||||++|||++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqae 160 (189)
T 3u5e_R 81 RKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAE 160 (189)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55632136873888999999999999999875898789999999996488777589999999999889999988999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99850099999899999999744989878
Q 028729 161 AKRAKNKASRERKLARREERLAQGPGEKA 189 (204)
Q Consensus 161 Arr~k~k~~r~rr~~r~~~kk~~~~~~~~ 189 (204)
|+|++|+++++++++++|+++++++++++
T Consensus 161 a~r~k~k~~~~r~~~~~~~k~~~~~~~~~ 189 (189)
T 3u5e_R 161 ARRLKNRAARDRRAQRVAEKRDALLKEDA 189 (189)
T ss_dssp HHHHHHHHHHHHHHHTTTSSTTHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99998899998789999988999874349
No 2
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_T
Probab=1.00 E-value=1 Score=539.94 Aligned_cols=181 Identities=91% Similarity=1.308 Sum_probs=177.8
Q ss_pred CCCCHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 97401467877897416997221195021577753405888962352943304677667358999999985396888788
Q 028729 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (204)
Q Consensus 1 M~~l~~QKRLAA~VL~cGk~kVWlDPne~~eIa~A~sR~~IRkLIkdGlIi~Kp~~~hSr~R~r~~~~ak~kGRh~G~Gk 80 (204)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+||++|++||||+||+++++++++|||+|+|+
T Consensus 1 M~~L~~QKRLAAsVL~cGk~rVWlDPne~~eIa~AnsRq~IRkLIkdGlIi~Kpv~~hSR~R~r~~~~ar~kGRh~G~Gk 80 (209)
T 3iz5_T 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPQKIHSRSRARRAHEAKQKGRHSGYGK 80 (209)
T ss_dssp CCCCHHHHHHHHHHHTSCTTTEEECSSSHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCHHHHHHHHHTTSSCCSCSSSS
T ss_pred CCCHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 94218899999999678877052486789899723018999999888876756776777478999999887087789986
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63432348850688999989999999998754999957549998654088655389999999987568988662458999
Q 028729 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (204)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~L~dQae 160 (204)
|+||+|||||+|++||+|||+||++|++|||+++||+|+||+||++||||+|+|+++|+||||++|||++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrRiR~LRrlLr~~Re~~kID~h~Yr~LY~KaKGn~Fknk~~L~e~I~k~Kaek~r~k~l~dqae 160 (209)
T 3iz5_T 81 RRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (209)
T ss_dssp SCSCTTTTCCSHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHTTCCCSSSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66653136874889999999999999999874898789999999996378778699999999998889999988999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9985009999989999999974
Q 028729 161 AKRAKNKASRERKLARREERLA 182 (204)
Q Consensus 161 Arr~k~k~~r~rr~~r~~~kk~ 182 (204)
|+|+++++++++++++ .++++
T Consensus 161 Arr~k~k~~r~rr~~r-~~~~~ 181 (209)
T 3iz5_T 161 AKRAKSKASRERKIAR-REERL 181 (209)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHH
T ss_conf 9999889999989988-88874
No 3
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1c_O 4a1e_O
Probab=1.00 E-value=1 Score=539.10 Aligned_cols=179 Identities=66% Similarity=1.043 Sum_probs=177.4
Q ss_pred CCCCHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 97401467877897416997221195021577753405888962352943304677667358999999985396888788
Q 028729 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (204)
Q Consensus 1 M~~l~~QKRLAA~VL~cGk~kVWlDPne~~eIa~A~sR~~IRkLIkdGlIi~Kp~~~hSr~R~r~~~~ak~kGRh~G~Gk 80 (204)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+||
T Consensus 1 M~~L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~Gk 80 (185)
T 4a1a_O 1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGK 80 (185)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGEEECSSSHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTT
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 94228899999999678876142485789899724128899999888876645777887578999888887277788775
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63432348850688999989999999998754999957549998654088655389999999987568988662458999
Q 028729 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (204)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~L~dQae 160 (204)
|+||+|||||+|++||++||+||++|++|||+++||+|+||+||++||||+|+|+++|+||||++|||++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqae 160 (185)
T 4a1a_O 81 RKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQE 160 (185)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTC-------------
T ss_pred CCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 43520025876889999999999999999875998789999999996478776499999999999889999988999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9985009999989999999
Q 028729 161 AKRAKNKASRERKLARREE 179 (204)
Q Consensus 161 Arr~k~k~~r~rr~~r~~~ 179 (204)
|+|++|+++++++++++|-
T Consensus 161 a~r~k~k~~r~~~~~~~~~ 179 (185)
T 4a1a_O 161 ARRAKNTASRAKRNEKAQI 179 (185)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999889999859999888
No 4
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=1.00 E-value=1 Score=529.03 Aligned_cols=189 Identities=64% Similarity=1.017 Sum_probs=185.4
Q ss_pred CCCCHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 97401467877897416997221195021577753405888962352943304677667358999999985396888788
Q 028729 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (204)
Q Consensus 1 M~~l~~QKRLAA~VL~cGk~kVWlDPne~~eIa~A~sR~~IRkLIkdGlIi~Kp~~~hSr~R~r~~~~ak~kGRh~G~Gk 80 (204)
|++|++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++||||+||+++++++++|||+|+||
T Consensus 1 M~~L~~QKRLAA~VL~cG~~rVWlDP~~~~eI~~A~sR~~IR~LIkdG~I~~Kp~~~~SR~R~r~~~~ar~kGRh~G~Gk 80 (196)
T 2zkr_p 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGK 80 (196)
T ss_dssp --------CHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCC-CCHHHHHHHHHHHHTCCCC---
T ss_pred CCCHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 96318999999999778867430386888899986639999999888876745765666788999999997177889987
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63432348850688999989999999998754999957549998654088655389999999987568988662458999
Q 028729 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (204)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~L~dQae 160 (204)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.|||++++++|+||||
T Consensus 81 RKGt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~LY~kaKGn~Fknk~~L~e~I~~~Kae~~r~k~l~~q~e 160 (196)
T 2zkr_p 81 RKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAE 160 (196)
T ss_dssp ---CHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC-----------------CHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76854356747899999999999999999876998789999999996188768589999999999899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99850099999899999999744989878
Q 028729 161 AKRAKNKASRERKLARREERLAQGPGEKA 189 (204)
Q Consensus 161 Arr~k~k~~r~rr~~r~~~kk~~~~~~~~ 189 (204)
|++++++++++++++++++++++++.+.+
T Consensus 161 a~r~k~k~~r~~r~~~~~~~~~~~~~~~~ 189 (196)
T 2zkr_p 161 ARRSKTKEARKRREERLQAKKEEIIKTLS 189 (196)
T ss_dssp HHHTTTHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987899999999999998998886541
No 5
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila}
Probab=1.00 E-value=1 Score=508.14 Aligned_cols=166 Identities=64% Similarity=1.023 Sum_probs=163.4
Q ss_pred CCCCHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 97401467877897416997221195021577753405888962352943304677667358999999985396888788
Q 028729 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (204)
Q Consensus 1 M~~l~~QKRLAA~VL~cGk~kVWlDPne~~eIa~A~sR~~IRkLIkdGlIi~Kp~~~hSr~R~r~~~~ak~kGRh~G~Gk 80 (204)
|++|++||||||+||+||++||||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+||
T Consensus 1 M~~L~~QKRLAAsVL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdGlIi~Kpv~~~SR~R~r~~~~ar~kGRh~G~Gk 80 (185)
T 4a17_O 1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGK 80 (185)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTT
T ss_pred CCCHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 94208899999999688988161384789999712128999999888977857764677578999999987188899987
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63432348850688999989999999998754999957549998654088655389999999987568988662458999
Q 028729 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (204)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~L~dQae 160 (204)
|+||+|||||+|++||+|||+||++|++|||+++||+|+||+||++||||+|+|+++|+||||++|||++++|+|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrRiR~LRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~Kae~~r~k~l~dqae 160 (185)
T 4a17_O 81 RKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKAXXXXXXXXXXXXX 160 (185)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 77754457973888999999999999998645988889999999995488768799999999998752000000000000
Q ss_pred HHHHHH
Q ss_conf 998500
Q 028729 161 AKRAKN 166 (204)
Q Consensus 161 Arr~k~ 166 (204)
|.....
T Consensus 161 a~~~~~ 166 (185)
T 4a17_O 161 XXXXXX 166 (185)
T ss_dssp HHHHHH
T ss_pred CCCCCC
T ss_conf 000000
No 6
>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P* 1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P* 1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P* 1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...
Probab=1.00 E-value=1 Score=461.61 Aligned_cols=149 Identities=35% Similarity=0.577 Sum_probs=147.7
Q ss_pred CCCCHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 97401467877897416997221195021577753405888962352943304677667358999999985396888788
Q 028729 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (204)
Q Consensus 1 M~~l~~QKRLAA~VL~cGk~kVWlDPne~~eIa~A~sR~~IRkLIkdGlIi~Kp~~~hSr~R~r~~~~ak~kGRh~G~Gk 80 (204)
|++|++||||||+||+||+++||||||+++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+||
T Consensus 1 M~~l~~QKRLAA~vL~cG~~rVw~DP~~~~eI~~A~sR~~IR~LIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~Gk 80 (149)
T 1vq8_P 1 MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGS 80 (149)
T ss_dssp -CCCHHHHHHHHHHTTSCGGGEEECGGGHHHHHHCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSGGG
T ss_pred CCCHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 96307899999999788867342387888898833018999999888886745665766799999999998277789987
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 634323488506889999899999999987549999575499986540886553899999999875689
Q 028729 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEK 149 (204)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~ 149 (204)
|+||+|||||+|++||++||+||++|++|||+++||+|+||.||++||||+|+|+++|+||||+.++|+
T Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~~~I~~~~~~~ 149 (149)
T 1vq8_P 81 RKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDANHGDA 149 (149)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTTCCSSHHHHHHHHTC-----
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 768543568689999999999999999998759987899999999953877377999999999854479
No 7
>3j21_Q PFEL19, 50S ribosomal protein L19E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=461.16 Aligned_cols=147 Identities=42% Similarity=0.806 Sum_probs=145.1
Q ss_pred CCCCHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 97401467877897416997221195021577753405888962352943304677667358999999985396888788
Q 028729 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (204)
Q Consensus 1 M~~l~~QKRLAA~VL~cGk~kVWlDPne~~eIa~A~sR~~IRkLIkdGlIi~Kp~~~hSr~R~r~~~~ak~kGRh~G~Gk 80 (204)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+||
T Consensus 1 m~~l~~QKRLAa~vL~cGk~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~Gk 80 (150)
T 3j21_Q 1 MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGS 80 (150)
T ss_dssp CCCCHHHHHHHHHHHTSCGGGEEECTTCHHHHHTCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSTTT
T ss_pred CCCHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 93148899999999767855160385889999863037889999878876755876767788999999987466688875
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6343234885068899998999999999875499995754999865408865538999999998756
Q 028729 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKA 147 (204)
Q Consensus 81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~ka 147 (204)
|+||+|||||+|++||+|||+||++|++|||+++||+|+||+||++||||+|+|+++|+|||+...-
T Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~re~~kID~~~Y~~LY~kaKGn~Fknk~~L~e~i~~~~~ 147 (150)
T 3j21_Q 81 RKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQLYLFLEEHGL 147 (150)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCSCHHHHHHHHHHHST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
T ss_conf 5472002697588999999999999999877489878999999999537876869999999999476
No 8
>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=1.00 E-value=1 Score=448.04 Aligned_cols=158 Identities=57% Similarity=0.942 Sum_probs=153.1
Q ss_pred CCCHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 74014678778974169972211950215777534058889623529433046776673589999999853968887886
Q 028729 2 VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKR 81 (204)
Q Consensus 2 ~~l~~QKRLAA~VL~cGk~kVWlDPne~~eIa~A~sR~~IRkLIkdGlIi~Kp~~~hSr~R~r~~~~ak~kGRh~G~GkR 81 (204)
++|++||||||+||+||++||||||||++||++||||||||+||+||+|++||++||||+||+++++++++|||+|+|||
T Consensus 1 ~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGr~~G~GkR 80 (176)
T 3jyw_P 1 ANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKR 80 (176)
T ss_dssp CCCHHHHHHHHHHHTCCTTTEECCSSCCHHHHHCCSHHHHHHHHHHTCSEECCCCCCCSHHHHHHHHHHTTTSSCSSSSC
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 97378899999996799773505827799997101299999999889778678767874889999998853878999987
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 343234885068899998999999999875499995754999865408865538999999998756898866245899
Q 028729 82 KGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQF 159 (204)
Q Consensus 82 KGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~L~dQa 159 (204)
+||+|||||+|++||+|||+||++|++|||+++||+|+||.||+++|||+|+|+++|++|||+.++|+++.-.-+.-+
T Consensus 81 kGt~~AR~p~K~~Wm~riR~lRrlLr~yRe~gkIDk~lYr~LY~kaKGn~Fknk~~L~e~I~k~ka~~~~~~~~~~~~ 158 (176)
T 3jyw_P 81 KGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIAAAAAAAAAAAAAAAAA 158 (176)
T ss_dssp SSCTTCSSCHHHHHHHHHHHHHHHHSTTTTTTSSCSTTTTTTGGGTTTTCCCSTTHHHHCTTTTGGGGHHHHHHGGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 664203698399999999999999999832787772266889898459873209999998788888888888888888
No 9
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=1.00 E-value=1 Score=17.34 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=18.8
Q ss_pred HHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 6540886553899999999875
Q 028729 125 MKVKGNVFKNKRVLMESIHKSK 146 (204)
Q Consensus 125 ~kaKGn~Fknk~~L~e~I~k~k 146 (204)
.+-||-.|+|-.-|..+|++.+
T Consensus 5 akykgrtfrnekelrdfiekfk 26 (28)
T 1fme_A 5 AKYKGRTFRNEKELRDFIEKFK 26 (28)
T ss_dssp EESSSCEECCHHHHHHHHHHCC
T ss_pred HHHCCCCCCCHHHHHHHHHHHC
T ss_conf 2106643136899999999855
No 10
>2k9u_B Filamin-binding LIM protein 1; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=15.97 Aligned_cols=11 Identities=45% Similarity=0.670 Sum_probs=7.9
Q ss_pred HHHHHHHHHHH
Q ss_conf 14678778974
Q 028729 5 KLQKRLSASVL 15 (204)
Q Consensus 5 ~~QKRLAA~VL 15 (204)
+.+||+||||+
T Consensus 4 kpeKR~aSSvF 14 (26)
T 2k9u_B 4 KPEKRVASSVF 14 (26)
T ss_dssp CSSSSCEEEEE
T ss_pred CCHHHEEEEEE
T ss_conf 40443100478
Done!