Query 028730
Match_columns 204
No_of_seqs 116 out of 264
Neff 3.5
Searched_HMMs 29240
Date Tue Mar 26 18:20:06 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028730.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2224-2228//hhsearch_pdb/028730hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_P 60S ribosomal protein L 1.0 1 1 737.9 18.9 204 1-204 1-204 (204)
2 4a17_L RPL15, ribosomal protei 1.0 1 1 736.9 17.2 204 1-204 1-204 (204)
3 3jyw_L 60S ribosomal protein L 1.0 1 1 696.1 17.6 192 2-194 1-192 (192)
4 1vq8_M 50S ribosomal protein L 1.0 1 1 690.0 18.6 192 1-194 2-193 (194)
5 3j21_M 50S ribosomal protein L 1.0 1 1 687.2 17.6 193 1-195 1-193 (194)
6 1ffk_I Ribosomal protein L15E; 1.0 1 1 678.7 17.6 191 1-195 2-192 (194)
7 3bvr_A NOTI restriction endonu 1.0 1 1 21.6 -4.8 46 107-152 246-301 (383)
8 2lp1_A C99; alzheimer'S D memb 1.0 1 1 17.5 0.0 42 84-136 60-101 (122)
9 2gzq_A Phosphatidylethanolamin 1.0 1 1 17.1 3.7 36 120-155 69-107 (200)
10 3axy_A Protein heading DATE 3A 1.0 1 1 17.0 3.5 35 120-155 58-95 (170)
No 1
>3iz5_P 60S ribosomal protein L15 (L15E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_P 2zkr_m
Probab=1.00 E-value=1 Score=737.91 Aligned_cols=204 Identities=91% Similarity=1.503 Sum_probs=203.4
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCC
Q ss_conf 93579999997313604799999999998831885577089998057775145644436999997663498997557865
Q 028730 1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV 80 (204)
Q Consensus 1 mg~y~yi~e~wkk~~s~~~~~l~r~R~~e~Rq~~~i~Rv~rPTR~dkAR~LGYKAKQG~Vi~RvRVRrGgrkr~~pkg~~ 80 (204)
||||+||+|+|++||||+|+||+|+|||||||||+|||+++||||||||+||||||||||||||+||+||+++|+|+|+|
T Consensus 1 mg~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVRrGgrkrp~pkg~~ 80 (204)
T 3iz5_P 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV 80 (204)
T ss_dssp CCTHHHHHHHHHCTTSHHHHHHHHHHHHHHHHSCSEEEESSCSCHHHHTTTCCCCSTTEEEEEEEEESSCCCCSCTTSCC
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCCCCC
T ss_conf 96889999998352328999999999999856774587689997377886577667706999998755788787657786
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 58864445100255531367999875200499212202641149981168999843787222469998400157755600
Q 028730 81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRE 160 (204)
Q Consensus 81 ~~KPk~~Gvn~lk~~kslq~iAEeR~grk~~nLrVLnSYwV~eDg~yK~yEVILVDP~H~aIr~Dp~~~WI~~~~hk~Re 160 (204)
||||++||||+|||++|||+|||||||++||||||||||||+|||+|||||||||||+||||++||+|||||+|+|||||
T Consensus 81 ~~kPk~~Gvn~lk~~rslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re 160 (204)
T 3iz5_P 81 YGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRE 160 (204)
T ss_dssp CSCGGGCCSSSSCCSSCHHHHHHHHHHHHSTTEEEEEEEEEEECSSEEEEEEEEEESSSHHHHTCTTTGGGTSGGGTTTT
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCHHHCCCCCCCCCCCCHHCCCC
T ss_conf 66731146145371000789999987440788577612554588872038999964774532259740002573213630
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEECC
Q ss_conf 00875333223587898876554689820111046613865419
Q 028730 161 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 204 (204)
Q Consensus 161 ~RGlTsagkk~RGlr~kG~~~~k~~~S~ra~w~r~n~~~l~r~r 204 (204)
||||||||+|+|||++|||+++||+||++|+|+++|||+|+|||
T Consensus 161 ~RGLTSAGkk~RGLr~kG~~~~k~r~s~ra~w~r~ntl~l~r~r 204 (204)
T 3iz5_P 161 LRGLTSAGKKYRGLRGKGHTHHKARPSRRATWKRNQTVSLRRYR 204 (204)
T ss_dssp TTTCSHHHHHTTTTTCCSTTGGGTSSCTTTTTTC----------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEEECC
T ss_conf 03776321234665778777555786401445123521257549
No 2
>4a17_L RPL15, ribosomal protein L15; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_L 4a1c_L 4a1e_L
Probab=1.00 E-value=1 Score=736.92 Aligned_cols=204 Identities=66% Similarity=1.188 Sum_probs=203.4
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCC
Q ss_conf 93579999997313604799999999998831885577089998057775145644436999997663498997557865
Q 028730 1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV 80 (204)
Q Consensus 1 mg~y~yi~e~wkk~~s~~~~~l~r~R~~e~Rq~~~i~Rv~rPTR~dkAR~LGYKAKQG~Vi~RvRVRrGgrkr~~pkg~~ 80 (204)
||||+||+|+|++||||+|+||+|+|||||||||+|||+++||||||||+||||||||||||||+||+||+++|+|+|+|
T Consensus 1 mg~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVRrGgrkrp~pkg~~ 80 (204)
T 4a17_L 1 MGAYKYLEELWRKKQSDLMSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDGYAIWRVRVRRGGRKRPVSKGIV 80 (204)
T ss_dssp -CHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHSCSEEEESSCSCHHHHHHTTCCSSTTEEEEEEEEECSCCCCCCGGGCC
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCCCCC
T ss_conf 96889999998352328999999999999856773587689997377886577667706999998866788788657886
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 58864445100255531367999875200499212202641149981168999843787222469998400157755600
Q 028730 81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRE 160 (204)
Q Consensus 81 ~~KPk~~Gvn~lk~~kslq~iAEeR~grk~~nLrVLnSYwV~eDg~yK~yEVILVDP~H~aIr~Dp~~~WI~~~~hk~Re 160 (204)
||||++||||+|||++|||+|||||||++||||||||||||+|||+|||||||||||+||||++||+|||||+|+|||||
T Consensus 81 ~~kPk~~Gvn~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re 160 (204)
T 4a17_L 81 YGKPSSVGINQLKFARNLRSCAEERVGKRVPELRVLNSYWVGQDGTYKFYEVILADPSHNAIRNDPRINWICESAHKHRE 160 (204)
T ss_dssp CSCTTTCCCTTCCCSSCHHHHHHHHHHHHSCSSEEEEEEEEECCSSEEEEEEEEECTTSHHHHHCTTTGGGGSGGGTTTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCHHHCCCCCCCCCCCCHHCCCC
T ss_conf 66731146145371000789999987440788577612554588872038999964774532259740003574004630
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEECC
Q ss_conf 00875333223587898876554689820111046613865419
Q 028730 161 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 204 (204)
Q Consensus 161 ~RGlTsagkk~RGlr~kG~~~~k~~~S~ra~w~r~n~~~l~r~r 204 (204)
||||||||+|+|||++|||+++||+||++|+|+++|||+|+|||
T Consensus 161 ~RGLTsAGkk~RGLr~kG~~~~k~r~s~ra~w~r~ntl~l~r~r 204 (204)
T 4a17_L 161 LRGLTSAGRKGRGLRVKGHRAKSLRTSRKGNWRARQMLKLRRYR 204 (204)
T ss_dssp TTTCSHHHHHHTTTTCCSTTTGGGTTTHHHHHHHHHCCCCCSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEEECC
T ss_conf 03765321234665778777555786401444124521257559
No 3
>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 4b6a_N 1s1i_L
Probab=1.00 E-value=1 Score=696.10 Aligned_cols=192 Identities=72% Similarity=1.237 Sum_probs=190.9
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCC
Q ss_conf 35799999973136047999999999988318855770899980577751456444369999976634989975578655
Q 028730 2 GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVY 81 (204)
Q Consensus 2 g~y~yi~e~wkk~~s~~~~~l~r~R~~e~Rq~~~i~Rv~rPTR~dkAR~LGYKAKQG~Vi~RvRVRrGgrkr~~pkg~~~ 81 (204)
|||+||+|+|++||||+|+||+|+|||||||||+|||+++||||||||+||||||||||||||+||+||+++|+|+|+||
T Consensus 1 g~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVRrGgrkrp~pkg~~~ 80 (192)
T 3jyw_L 1 GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATY 80 (192)
T ss_dssp CCCTTTHHHHHCTTSTTHHHHHHHHHHHHHHCCSEEEESSCSSHHHHHHHHCCCSTTCEEEEEECCCSSSBCCCCCSCSC
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCCCCCC
T ss_conf 97799999983610089999999999998567745876899973778865776677069999988678887886578866
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 88644451002555313679998752004992122026411499811689998437872224699984001577556000
Q 028730 82 GKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHREL 161 (204)
Q Consensus 82 ~KPk~~Gvn~lk~~kslq~iAEeR~grk~~nLrVLnSYwV~eDg~yK~yEVILVDP~H~aIr~Dp~~~WI~~~~hk~Re~ 161 (204)
|||++||||+|||++|||+|||||||++||||||||||||+|||+|||||||||||+||||++||++||||+|+||||||
T Consensus 81 gkPk~~Gvn~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re~ 160 (192)
T 3jyw_L 81 GKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREA 160 (192)
T ss_dssp SSCSSCCSBCCCCSSCHHHHHHHHHHTTSSSSEEEEEEEEEECSSCEEEEEEEECSSCSSTTTSSTTTGGGSGGGSSTTT
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCHHHCCCCCCCCCCCCHHCCCCC
T ss_conf 67300461453710017899999874407885775125544888720389999647745322597400025740046300
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
Q ss_conf 087533322358789887655468982011104
Q 028730 162 RGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 194 (204)
Q Consensus 162 RGlTsagkk~RGlr~kG~~~~k~~~S~ra~w~r 194 (204)
|||||||+|+||| +|||+++||+||++|+|++
T Consensus 161 RGLTsAGkk~RGL-~kG~~~~k~~~s~ra~w~r 192 (192)
T 3jyw_L 161 RGLTATGKKSRGI-NKGHKFNNTKAGRRKTWKR 192 (192)
T ss_dssp TTCSTTGGGGTCC-CCSSTTSSSSSCHHHHTCC
T ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC
T ss_conf 3776322234566-7776756578753301359
No 4
>1vq8_M 50S ribosomal protein L15E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.2 PDB: 1vq4_M* 1vq5_M* 1vq6_M* 1vq7_M* 1s72_M* 1vqn_M* 2otj_M* 2otl_M* 2qex_M* 2qa4_M* 1vqo_M* 1vq9_M* 1vql_M* 1vqm_M* 1vqk_M* 1vqp_M* 1yij_M* 1yi2_M* 1yit_M* 1yj9_M* ...
Probab=1.00 E-value=1 Score=690.02 Aligned_cols=192 Identities=43% Similarity=0.700 Sum_probs=191.1
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCC
Q ss_conf 93579999997313604799999999998831885577089998057775145644436999997663498997557865
Q 028730 1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV 80 (204)
Q Consensus 1 mg~y~yi~e~wkk~~s~~~~~l~r~R~~e~Rq~~~i~Rv~rPTR~dkAR~LGYKAKQG~Vi~RvRVRrGgrkr~~pkg~~ 80 (204)
||||+||+|+|++||||+|+||+|+|||||||+|+|||+++||||||||+|||||||||||||||||+||+++|+|+|+
T Consensus 2 mgaY~Yi~e~wkkkqsd~~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrVRrGgrkrp~pkg~- 80 (194)
T 1vq8_M 2 RSAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAG- 80 (194)
T ss_dssp CCSHHHHHHHTTSTTSHHHHHHHHHHHHHHTTSCSEEEESSCSSHHHHHHHTCCSSTTEEEEEEEEECSSCCCCCCSSC-
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCC-
T ss_conf 5389999999827222899999999999985788468858999746788657766870799999852188878776899-
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 58864445100255531367999875200499212202641149981168999843787222469998400157755600
Q 028730 81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRE 160 (204)
Q Consensus 81 ~~KPk~~Gvn~lk~~kslq~iAEeR~grk~~nLrVLnSYwV~eDg~yK~yEVILVDP~H~aIr~Dp~~~WI~~~~hk~Re 160 (204)
|||++||||+|||++|||+|||||||++||||||||||||+|||+|||||||||||+||||++||+|||||+|+|||||
T Consensus 81 -~kPk~~Gv~~lk~~rslq~iAEERagrk~~nLrVLNSYWV~eD~~yK~yEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re 159 (194)
T 1vq8_M 81 -RRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRV 159 (194)
T ss_dssp -CCGGGTCCSSCCCSSCHHHHHHHHHHHHSTTCEEEEEEEEEEETTEEEEEEEEECTTCHHHHTCTTTGGGGSGGGTTGG
T ss_pred -CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHCCCCCCCCCCCCCCCCH
T ss_conf -9750227566370101789999987431888545521786057862679999976886744028642411474002201
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
Q ss_conf 0087533322358789887655468982011104
Q 028730 161 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 194 (204)
Q Consensus 161 ~RGlTsagkk~RGlr~kG~~~~k~~~S~ra~w~r 194 (204)
||||||||+|+|||++|||+++||+||++|+|++
T Consensus 160 ~RGLTsaGkk~RGL~~kG~~~~k~~~~~ra~w~~ 193 (194)
T 1vq8_M 160 FRGLTGAGRRNRGLSGKGKGSEKTRPSLRSNGGK 193 (194)
T ss_dssp GGTCSHHHHHHTTCSCSSTTCTTTSSCTTTTTSC
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC
T ss_conf 0365634332576578987865477540112115
No 5
>3j21_M 50S ribosomal protein L15E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=687.23 Aligned_cols=193 Identities=51% Similarity=0.855 Sum_probs=191.6
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCC
Q ss_conf 93579999997313604799999999998831885577089998057775145644436999997663498997557865
Q 028730 1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV 80 (204)
Q Consensus 1 mg~y~yi~e~wkk~~s~~~~~l~r~R~~e~Rq~~~i~Rv~rPTR~dkAR~LGYKAKQG~Vi~RvRVRrGgrkr~~pkg~~ 80 (204)
||||+||+|+|++||||+|+||+|+|||||||+|+|||+++||||||||+||||||||||||||+||+||+++|+|+|+
T Consensus 1 Mg~Y~yi~e~wkkk~s~~~~~l~r~R~~e~Rq~~ai~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVrrGgrkr~~pkg~- 79 (194)
T 3j21_M 1 MGMYKYIREAWKSPKKSYVGELLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYVIVRVRVRKGGRKRPRWKGG- 79 (194)
T ss_dssp CCHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHSCSEEEESSCSSHHHHHHHHCCCSTTEEEEEEEEESSCCCCCCCSSC-
T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCC-
T ss_conf 9688999999846001789999999999986467536558999705788647665672699999874378879875899-
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 58864445100255531367999875200499212202641149981168999843787222469998400157755600
Q 028730 81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRE 160 (204)
Q Consensus 81 ~~KPk~~Gvn~lk~~kslq~iAEeR~grk~~nLrVLnSYwV~eDg~yK~yEVILVDP~H~aIr~Dp~~~WI~~~~hk~Re 160 (204)
|||++||||+|||++|||+|||||||++||||||||||||+|||+|||||||||||+||||++||+|||||+|+|||||
T Consensus 80 -~kPk~~Gv~~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re 158 (194)
T 3j21_M 80 -RKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRV 158 (194)
T ss_dssp -CCTTTTCCSSCCCSSCHHHHHHHHHHHHSTTSEEEEEEEEEECSSEEEEEEEEECSSCHHHHHSTTTGGGGSGGGTTHH
T ss_pred -CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECEEECCCCCCEEEEEEEECCCCHHHCCCCCCCCCCCCCCCCCC
T ss_conf -9752226555370102799999987262788566503555588872048999975887311158752312464003640
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 00875333223587898876554689820111046
Q 028730 161 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRN 195 (204)
Q Consensus 161 ~RGlTsagkk~RGlr~kG~~~~k~~~S~ra~w~r~ 195 (204)
||||||||+|+|||++|||+++|++||++|+|++.
T Consensus 159 ~RGLTsAGkk~RGL~~kG~~~~k~rps~ra~~~~~ 193 (194)
T 3j21_M 159 FRGLTSAGKKGRGLRNKGKGAEKVRPSIRANEGKG 193 (194)
T ss_dssp HHCCSHHHHHHHTTTCSSTTCSSSSSCSTTSSSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 03755332213554566776443683423432358
No 6
>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2
Probab=1.00 E-value=1 Score=678.70 Aligned_cols=191 Identities=45% Similarity=0.779 Sum_probs=189.7
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCC
Q ss_conf 93579999997313604799999999998831885577089998057775145644436999997663498997557865
Q 028730 1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV 80 (204)
Q Consensus 1 mg~y~yi~e~wkk~~s~~~~~l~r~R~~e~Rq~~~i~Rv~rPTR~dkAR~LGYKAKQG~Vi~RvRVRrGgrkr~~pkg~~ 80 (204)
||||+||+|+|++||||+|+||+|+|||||||+|+|||+++||||||||+|||||||||||||||||+||+++|+|+|+
T Consensus 2 mgaY~Yi~e~wkkkqsd~~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrVRrGgrkrp~pkg~- 80 (194)
T 1ffk_I 2 KSMYAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATRPNKG- 80 (194)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCC-
T ss_conf 6489999999827222899999999999984788468758999646788657866870799999852188878776899-
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 58864445100255531367999875200499212202641149981168999843787222469998400157755600
Q 028730 81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRE 160 (204)
Q Consensus 81 ~~KPk~~Gvn~lk~~kslq~iAEeR~grk~~nLrVLnSYwV~eDg~yK~yEVILVDP~H~aIr~Dp~~~WI~~~~hk~Re 160 (204)
|||++||||+|||++|||+|||||||++||||||||||||+|||+|||||||||||+||||++||+|||||+ |||||
T Consensus 81 -~kPk~~Gvn~lk~~rslq~iAEERagrk~~nLrVLNSYWV~qD~~yK~yEVILVDp~H~aIr~Dp~~nWI~~--hk~Re 157 (194)
T 1ffk_I 81 -RKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSR--TRGRV 157 (194)
T ss_pred -CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHCCCCCCCCCC--CCCCH
T ss_conf -976133856537010279999998743188854551178605786367999997688574403963244414--54531
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 00875333223587898876554689820111046
Q 028730 161 LRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRN 195 (204)
Q Consensus 161 ~RGlTsagkk~RGlr~kG~~~~k~~~S~ra~w~r~ 195 (204)
||||||||+|+|||++|||+++||+||.+|+|++.
T Consensus 158 ~RGLTsaGkk~RGL~~kG~~~~k~~~~~ra~w~r~ 192 (194)
T 1ffk_I 158 YRGLTSAGRKARGLRRKGRGAEKVRPSLRANFRKK 192 (194)
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 02656343325765789877554775233555531
No 7
>3bvr_A NOTI restriction endonuclease; protein-DNA complex; HET: DNA; 2.50A {Nocardia otitidiscaviarum} PDB: 3bvq_A* 3c25_A*
Probab=1.00 E-value=1 Score=21.57 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=35.7
Q ss_pred HHCCCCCEEEEEEEECCCCCCEEEEEEEECC----------CCCCCCCCCCCCCCC
Q ss_conf 2004992122026411499811689998437----------872224699984001
Q 028730 107 GRKLGGLRVLNSYWINEDSTYKYFEVILVDP----------AHNAIRNDPRINWLC 152 (204)
Q Consensus 107 grk~~nLrVLnSYwV~eDg~yK~yEVILVDP----------~H~aIr~Dp~~~WI~ 152 (204)
|.-+..-.+-+-|+|-.+..|+.||-+|..| +-.-.+|||+.+||-
T Consensus 246 g~v~~h~l~~Gl~FviPe~Vy~~~~~~l~~~~~~~~~~~~~~~~d~~nd~~~~~if 301 (383)
T 3bvr_A 246 FALSGHQRCAGTGFAIPQSVWKSWLRHLANPTLIDNGDGTFSLGDTRNDSENAWIF 301 (383)
T ss_dssp HHHTTSTTEEEEEEEEEHHHHHHHTTTTTSCCCEECSSSCEEESCCSSSCCCEEEE
T ss_pred HHHHHHHHHCCEEEEECHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCEEE
T ss_conf 42010020045589937799999999846872431787732025556786421899
No 8
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=17.51 Aligned_cols=42 Identities=29% Similarity=0.495 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEEC
Q ss_conf 64445100255531367999875200499212202641149981168999843
Q 028730 84 PTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVD 136 (204)
Q Consensus 84 Pk~~Gvn~lk~~kslq~iAEeR~grk~~nLrVLnSYwV~eDg~yK~yEVILVD 136 (204)
|.++|+...-+ .++.| -++..||.+=+ .|+-||||||.+-..
T Consensus 60 ~~s~GfvEVDp-----~~TPE--ERHva~MQ~nG----YENPTYKffE~~~~~ 101 (122)
T 2lp1_A 60 SIHHGVVEVDA-----AVTPE--ERHLSKMQQNG----YENPTYKFFEQMQNQ 101 (122)
No 9
>2gzq_A Phosphatidylethanolamine-binding protein; structural genomics, PSI, protein structure initiative; HET: MSE; 1.30A {Plasmodium vivax} PDB: 2r77_A
Probab=1.00 E-value=1 Score=17.13 Aligned_cols=36 Identities=14% Similarity=0.397 Sum_probs=24.2
Q ss_pred EECCCCCCEEEEEEEECCCCCCCCCC---CCCCCCCCCC
Q ss_conf 41149981168999843787222469---9984001577
Q 028730 120 WINEDSTYKYFEVILVDPAHNAIRND---PRINWLCNPV 155 (204)
Q Consensus 120 wV~eDg~yK~yEVILVDP~H~aIr~D---p~~~WI~~~~ 155 (204)
|-+.+..-+.|-+||+||.-|.-.++ .-+-|+.-..
T Consensus 69 ~~~~~~~~~~ytLvm~DPDaP~~~~~~~~~~~HWlv~nI 107 (200)
T 2gzq_A 69 FSEEPPEDYCYILFMIDPDFPSRRRPDGRDYVHWAVSGI 107 (200)
T ss_dssp ESSCCCTTEEEEEEEEETTCSCSSCCTTCSEEEEEEEEE
T ss_pred ECCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECC
T ss_conf 736788882599999889999987778887898999698
No 10
>3axy_A Protein heading DATE 3A; phosphatidylethanolamine-binding protein, 14-3-3 protein, BZ protein, floral induction; HET: SEP; 2.40A {Oryza sativa japonica group} PDB: 1wkp_A
Probab=1.00 E-value=1 Score=17.01 Aligned_cols=35 Identities=17% Similarity=0.491 Sum_probs=23.3
Q ss_pred EECCCCCCEEEEEEEECCCCCCCCCC---CCCCCCCCCC
Q ss_conf 41149981168999843787222469---9984001577
Q 028730 120 WINEDSTYKYFEVILVDPAHNAIRND---PRINWLCNPV 155 (204)
Q Consensus 120 wV~eDg~yK~yEVILVDP~H~aIr~D---p~~~WI~~~~ 155 (204)
|-+.+.. +.|-+||+||..|.-.++ .-+-|+.-..
T Consensus 58 ~~~~~~~-~~ytlvm~DpDaP~~~~p~~~~~~HWlv~nI 95 (170)
T 3axy_A 58 VGGNDMR-TFYTLVMVDPDAPSPSDPNLREYLHWLVTDI 95 (170)
T ss_dssp ECCSCTT-CEEEEEEEETTCSCTTSCTTCSEEEEEEEEE
T ss_pred EECCCCC-CEEEEEEECCCCCCCCCCCCCCEEEEEEECC
T ss_conf 8478998-3789999798999876677754789778177
Done!