BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028732
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UNF|X Chain X, The Crystal Structure Of The Eukaryotic Fesod From Vigna
Unguiculata Suggests A New Enzymatic Mechanism
Length = 238
Score = 159 bits (402), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 87/177 (49%), Positives = 113/177 (63%), Gaps = 16/177 (9%)
Query: 37 QRASKIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYT 96
+ K+ A + LK PPY L+ LEP MS++TLE HWG+ HR YVE L K + + L G +
Sbjct: 10 KEGPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQVVGTE-LDGKS 68
Query: 97 LDELVKVSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNF 156
L+E++ +YN G+ LP FNNA QVWNHDFFWE M+PGGG P +LE IE+DFGSF F
Sbjct: 69 LEEIIVTAYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFEKF 128
Query: 157 KEKFIGAALTLFGSGYVWLVLKR---------------EERRLAVVKTSNAINPLVW 198
++F AA T FGSG+ WL K E+ +L V+K+ NA+NPLVW
Sbjct: 129 LDEFKAAAATQFGSGWAWLAYKASKLDGENAANPPSADEDNKLVVIKSPNAVNPLVW 185
>pdb|1MY6|A Chain A, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
pdb|1MY6|B Chain B, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
Length = 199
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 97/147 (65%), Gaps = 4/147 (2%)
Query: 52 PYKLDALEPY-MSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNP 110
P+ ALEPY MS +TLE H+G+ H+GYV+ LNK L +D L +L+++++ +Y
Sbjct: 8 PFDPGALEPYGMSAKTLEFHYGKHHKGYVDNLNK-LTQDTELADKSLEDVIRTTYGDAAK 66
Query: 111 LPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGS 170
+ +FNNA QVWNH FFW S++PGGG +P V +I FGS+ FK +F AA T FGS
Sbjct: 67 VGIFNNAAQVWNHTFFWNSLKPGGGGVPTGDVAARINSAFGSYDEFKAQFKNAAATQFGS 126
Query: 171 GYVWLVLKREERRLAVVKTSNAINPLV 197
G+ WLVL E L V KT+NA NPLV
Sbjct: 127 GWAWLVL--EAGTLKVTKTANAENPLV 151
>pdb|1ISA|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISA|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISB|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISB|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISC|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISC|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
Length = 192
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 89/152 (58%), Gaps = 7/152 (4%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSY 105
+ L PY DAL P++S T+E H+G+ H+ YV LN +L K G +L+E+++ S
Sbjct: 2 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLN-NLIKGTAFEGKSLEEIIRSSE 60
Query: 106 NSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAAL 165
VFNNA QVWNH F+W + P G P V E I FGSF +FK +F AA+
Sbjct: 61 GG-----VFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAI 115
Query: 166 TLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197
FGSG+ WLV K + +LA+V TSNA PL
Sbjct: 116 KNFGSGWTWLV-KNSDGKLAIVSTSNAGTPLT 146
>pdb|2NYB|A Chain A, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|B Chain B, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|C Chain C, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|D Chain D, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2BKB|A Chain A, Q69e-Fesod
pdb|2BKB|B Chain B, Q69e-Fesod
pdb|2BKB|C Chain C, Q69e-Fesod
pdb|2BKB|D Chain D, Q69e-Fesod
Length = 192
Score = 123 bits (308), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 89/152 (58%), Gaps = 7/152 (4%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSY 105
+ L PY DAL P++S T+E H+G+ H+ YV LN +L K G +L+E+++ S
Sbjct: 2 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLN-NLIKGTAFEGKSLEEIIRSSE 60
Query: 106 NSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAAL 165
VFNNA +VWNH F+W + P G P V E I FGSF +FK +F AA+
Sbjct: 61 GG-----VFNNAAEVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAI 115
Query: 166 TLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197
FGSG+ WLV K + +LA+V TSNA PL
Sbjct: 116 KNFGSGWTWLV-KNSDGKLAIVSTSNAGTPLT 146
>pdb|1ZA5|A Chain A, Q69h-Fesod
pdb|1ZA5|B Chain B, Q69h-Fesod
Length = 192
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 88/152 (57%), Gaps = 7/152 (4%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSY 105
+ L PY DAL P++S T+E H+G+ H+ YV LN +L K G +L+E+++ S
Sbjct: 2 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLN-NLIKGTAFEGKSLEEIIRSSE 60
Query: 106 NSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAAL 165
VFNNA VWNH F+W + P G P V E I FGSF +FK +F AA+
Sbjct: 61 GG-----VFNNAAHVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAI 115
Query: 166 TLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197
FGSG+ WLV K + +LA+V TSNA PL
Sbjct: 116 KNFGSGWTWLV-KNSDGKLAIVSTSNAGTPLT 146
>pdb|3JS4|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
Length = 227
Score = 116 bits (291), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 93/157 (59%), Gaps = 5/157 (3%)
Query: 44 AYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDV--LYGYTLDELV 101
+ + L PY + LEPY+S L+ H+ H+ YV+ LNK + + L +L ++V
Sbjct: 21 SMFELSDLPY--EGLEPYISSHLLDRHYNGHHKTYVDVLNKLVVGTEFEGLGNESLGDIV 78
Query: 102 KVSYNSGNP-LPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKF 160
++NSG+ +FNNA Q+WNHDF+W+SM+P GG P + E IE FGS F F
Sbjct: 79 VKAHNSGSAGRAIFNNAAQIWNHDFYWQSMKPNGGGNPPEKLREMIEHSFGSVEGFNNAF 138
Query: 161 IGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197
+ L FGSG+VWLV + + L VV T+NA +PL+
Sbjct: 139 TTSGLGQFGSGWVWLVYDEDAKALKVVSTANADSPLL 175
>pdb|2A03|A Chain A, Superoxide Dismutase Protein From Plasmodium Berghei
pdb|2A03|B Chain B, Superoxide Dismutase Protein From Plasmodium Berghei
Length = 206
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 89/144 (61%), Gaps = 7/144 (4%)
Query: 53 YKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLP 112
Y L+AL P++S+ TL H+ + H GYV LN L KD L +L +++K S +
Sbjct: 18 YALNALSPHISEETLSFHYNKHHAGYVNKLNG-LIKDTPLANKSLTDILKESTGA----- 71
Query: 113 VFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGY 172
+FNNA Q+WNH F+W+SM P G P + E+I++DFGSF NFK++F FGSG+
Sbjct: 72 IFNNAAQIWNHSFYWDSMGPNCGGEPHGEIKEKIQEDFGSFNNFKDQFSNVLCGHFGSGW 131
Query: 173 VWLVLKREERRLAVVKTSNAINPL 196
WL L + +L +++T +A NP+
Sbjct: 132 GWLALNK-NNKLVILQTHDAGNPI 154
>pdb|2CW2|A Chain A, Crystal Structure Of Superoxide Dismutase From P. Marinus
pdb|2CW2|B Chain B, Crystal Structure Of Superoxide Dismutase From P. Marinus
Length = 226
Score = 113 bits (283), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 89/145 (61%), Gaps = 7/145 (4%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPL 111
PY +ALEP+MS TL H + H+ YV+ LN A++ + TL++++K +G P
Sbjct: 39 PYVKNALEPHMSAETLTYHHDKHHQTYVDTLNSIAAENSTIASKTLEQIIKTE--TGKP- 95
Query: 112 PVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSG 171
FN A QV+NH FF+ ++ P GG P + E I +DFGSF FKE F AA+ FGSG
Sbjct: 96 --FNQAAQVYNHTFFFNNLAPNGGGEPTGKIAELITRDFGSFEKFKEDFSAAAVGHFGSG 153
Query: 172 YVWLVLKREERRLAVVKTSNAINPL 196
+VWL+ ++ +L +V+ +A NP+
Sbjct: 154 WVWLIA--DDGKLKIVQGHDAGNPI 176
>pdb|2AWP|A Chain A, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
pdb|2AWP|B Chain B, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
Length = 198
Score = 113 bits (282), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 87/144 (60%), Gaps = 7/144 (4%)
Query: 53 YKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLP 112
Y L+AL P++S+ TL H+ + H GYV LN L KD +L E++K S +
Sbjct: 10 YALNALSPHISEETLNFHYNKHHAGYVNKLNG-LIKDTPFATKSLVEIMKESTGA----- 63
Query: 113 VFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGY 172
+FNNA Q+WNH F+W+SM P G P + E+I++DFGSF NFK +F FGSG+
Sbjct: 64 IFNNAAQIWNHSFYWDSMGPNCGGEPHGEIKEKIQEDFGSFNNFKNEFSNVLCGHFGSGW 123
Query: 173 VWLVLKREERRLAVVKTSNAINPL 196
WLVL +L +++T +A NP+
Sbjct: 124 GWLVLNN-NNKLVILQTHDAGNPI 146
>pdb|2GOJ|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
pdb|2GOJ|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
Length = 197
Score = 113 bits (282), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 88/144 (61%), Gaps = 7/144 (4%)
Query: 53 YKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLP 112
Y L+AL P++S+ TL H+ + H GYV LN L KD +L ++VK S SG
Sbjct: 9 YALNALSPHISEETLNFHYNKHHAGYVNKLNT-LIKDTPFAEKSLLDIVKES--SG---A 62
Query: 113 VFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGY 172
+FNNA Q+WNH F+W+SM P G P + E+I++DFGSF NFKE+F FGSG+
Sbjct: 63 IFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGW 122
Query: 173 VWLVLKREERRLAVVKTSNAINPL 196
WL L +L +++T +A NP+
Sbjct: 123 GWLALNN-NNKLVILQTHDAGNPI 145
>pdb|2BPI|A Chain A, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum.
pdb|2BPI|B Chain B, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum
Length = 206
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 88/144 (61%), Gaps = 7/144 (4%)
Query: 53 YKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLP 112
Y L+AL P++S+ TL H+ + H GYV LN L KD +L ++VK S SG
Sbjct: 10 YALNALSPHISEETLNFHYNKHHAGYVNKLNT-LIKDTPFAEKSLLDIVKES--SG---A 63
Query: 113 VFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGY 172
+FNNA Q+WNH F+W+SM P G P + E+I++DFGSF NFKE+F FGSG+
Sbjct: 64 IFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGW 123
Query: 173 VWLVLKREERRLAVVKTSNAINPL 196
WL L +L +++T +A NP+
Sbjct: 124 GWLALNN-NNKLVILQTHDAGNPI 146
>pdb|3TQJ|A Chain A, Structure Of The Superoxide Dismutase (Fe) (Sodb) From
Coxiella Burnetii
pdb|3TQJ|B Chain B, Structure Of The Superoxide Dismutase (Fe) (Sodb) From
Coxiella Burnetii
Length = 210
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 83/146 (56%), Gaps = 7/146 (4%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPL 111
PYKL+ALEP++S+ TLE H G+ HR YV LNK L + L+E+++ S
Sbjct: 9 PYKLNALEPHISQETLEYHHGKHHRAYVNKLNK-LIEGTPFEKEPLEEIIRKSDGG---- 63
Query: 112 PVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSG 171
+FNNA Q WNH F+W M P GG P + I+K FGS FK F +A FGSG
Sbjct: 64 -IFNNAAQHWNHTFYWHCMSPDGGGDPSGELASAIDKTFGSLEKFKALFTDSANNHFGSG 122
Query: 172 YVWLVLKREERRLAVVKTSNAINPLV 197
+ WLV K +L V+ T NA NP+
Sbjct: 123 WAWLV-KDNNGKLEVLSTVNARNPMT 147
>pdb|3LIO|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form I)
pdb|3LIO|B Chain B, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form I)
pdb|3LJ9|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis In Complex With Sodium
Azide
pdb|3LJ9|B Chain B, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis In Complex With Sodium
Azide
pdb|3LJF|A Chain A, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|C Chain C, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|B Chain B, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|D Chain D, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
Length = 192
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 85/152 (55%), Gaps = 7/152 (4%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSY 105
+ L + PY +DALEP++SK TLE H G+ H YV LN L +L+E+V S
Sbjct: 2 FELPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLNG-LIPGTKFENKSLEEIV-CSS 59
Query: 106 NSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAAL 165
+ G VFNNA Q+WNH F+W S+ P GG P V + I +GSF FKE A+
Sbjct: 60 DGG----VFNNAAQIWNHTFYWNSLSPNGGGAPTGAVADAINAKWGSFDAFKEALNDKAV 115
Query: 166 TLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197
FGS + WLV K + L +V TSNA PL
Sbjct: 116 NNFGSSWTWLV-KLADGSLDIVNTSNAATPLT 146
>pdb|1DT0|A Chain A, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|B Chain B, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|C Chain C, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
Length = 197
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 84/149 (56%), Gaps = 7/149 (4%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPL 111
PY DAL+P++SK TLE H + H YV LN +L G TL+E+VK S SG
Sbjct: 8 PYAHDALQPHISKETLEFHHDKHHNTYVVNLN-NLVPGTEFEGKTLEEIVKTS--SGG-- 62
Query: 112 PVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSG 171
+FNNA QVWNH F+W + P G P + + I FGSF FKE+F ++ FGSG
Sbjct: 63 -IFNNAAQVWNHTFYWNCLSPNAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSG 121
Query: 172 YVWLVLKREERRLAVVKTSNAINPLVWND 200
+ WLV K+ + LA+ T A PL D
Sbjct: 122 WGWLV-KKADGSLALASTIGAGCPLTIGD 149
>pdb|3SDP|A Chain A, The 2.1 Angstroms Resolution Structure Of Iron Superoxide
Dismutase From Pseudomonas Ovalis
pdb|3SDP|B Chain B, The 2.1 Angstroms Resolution Structure Of Iron Superoxide
Dismutase From Pseudomonas Ovalis
Length = 195
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 82/149 (55%), Gaps = 7/149 (4%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPL 111
PY DAL+P++SK TLE H + H YV LN + G TL+E+VK S SG
Sbjct: 8 PYAHDALQPHISKETLEYHHDKHHNTYVVNLNNLVPGTPEFEGKTLEEIVKSS--SGG-- 63
Query: 112 PVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSG 171
+FNNA QVWNH F+W + P G P + + I FGSF FKE+F ++ FGSG
Sbjct: 64 -IFNNAAQVWNHTFYWNCLSPDAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSG 122
Query: 172 YVWLVLKREERRLAVVKTSNAINPLVWND 200
+ WLV + + LA+ T A PL D
Sbjct: 123 WAWLV--KADGSLALCSTIGAGAPLTSGD 149
>pdb|2W7W|A Chain A, The Crystal Structure Of Iron Superoxide Dismutase From
Aliivibrio Salmonicida.
pdb|2W7W|B Chain B, The Crystal Structure Of Iron Superoxide Dismutase From
Aliivibrio Salmonicida
Length = 194
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 83/152 (54%), Gaps = 7/152 (4%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSY 105
+ L P+ DALEP++S TL+ H G+ H YV LN L G TL+E++K S
Sbjct: 3 FELPALPFAKDALEPHISAETLDYHHGKHHNTYVVKLNG-LIPGTEFEGKTLEEIIKTST 61
Query: 106 NSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAAL 165
VFNNA Q+WNH F+W + P G P V I+ FGSF FK KF +A+
Sbjct: 62 GG-----VFNNAAQIWNHTFYWNCLAPNAGGQPTGAVAAAIDAAFGSFEEFKAKFTDSAI 116
Query: 166 TLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197
FGS + WLV K + LA+V TSNA PL
Sbjct: 117 NNFGSSWTWLV-KNADGSLAIVNTSNAATPLT 147
>pdb|3H1S|A Chain A, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
pdb|3H1S|B Chain B, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 195
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 87/148 (58%), Gaps = 8/148 (5%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPL 111
PY +DALE +SK T+E H+G+ H+ YV LN +L + G L+E+VK S N G
Sbjct: 12 PYAVDALESTISKETIEYHYGKHHQTYVTNLN-NLVEGTEHDGRNLEEIVKTS-NGG--- 66
Query: 112 PVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSG 171
+FNNA QV+NH F+W + P + IE FGS NFKE+F AA+ FGSG
Sbjct: 67 -IFNNAAQVFNHTFYWNCLTPNKTEASSQLKAALIET-FGSVENFKEQFSKAAIATFGSG 124
Query: 172 YVWLVLKREERRLAVVKTSNAINPLVWN 199
+ WLV K E +L +V TSNA PL N
Sbjct: 125 WAWLV-KNTEGKLEIVTTSNAGCPLTEN 151
>pdb|3ESF|A Chain A, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|B Chain B, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|C Chain C, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|D Chain D, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
Length = 197
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 82/151 (54%), Gaps = 6/151 (3%)
Query: 52 PYKLDALEPY-MSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNP 110
P+ D L +SK + H+ + H GYV LN + L +++E+++
Sbjct: 9 PWGYDGLAAKGISKEQVTFHYDKHHMGYVTKLNAAANSNPALAAKSVEEIIRTEKG---- 64
Query: 111 LPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGS 170
P+FN A Q++NH+F+WESM P GG P + E I FGSF FKE+F AA+ FGS
Sbjct: 65 -PIFNLAAQIFNHNFYWESMSPNGGGEPSGKLAEAIRASFGSFAKFKEEFTNAAVGHFGS 123
Query: 171 GYVWLVLKREERRLAVVKTSNAINPLVWNDI 201
G+ WLV ++L V +T +A PL D+
Sbjct: 124 GWAWLVQDTTTKKLKVFQTHDAGCPLTEADL 154
>pdb|3TJT|A Chain A, Crystal Structure Analysis Of The Superoxide Dismutase
From Clostridium Difficile
Length = 208
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 96/160 (60%), Gaps = 12/160 (7%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSY 105
+ +K PY DALEPY+ K T+++H + ++ YV+ LN L K LY Y+L EL++
Sbjct: 6 FKVKPLPYAYDALEPYIDKETMKLHHDKHYQAYVDKLNAALEKYPELYNYSLCELLQ--- 62
Query: 106 NSGNPLP------VFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEK 159
+ + LP V NNA +NH FF++ M P IP + E I++DFGSF FK++
Sbjct: 63 -NLDSLPKDIATTVRNNAGGAYNHKFFFDIMTPEKT-IPSESLKEAIDRDFGSFEKFKQE 120
Query: 160 FIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWN 199
F +AL +FGSG+ WLV + + +L+++ T N +P+ N
Sbjct: 121 FQKSALDVFGSGWAWLVATK-DGKLSIMTTPNQDSPVSKN 159
>pdb|2GPC|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Trypanosoma Cruzi
pdb|2GPC|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Trypanosoma Cruzi
Length = 194
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 81/147 (55%), Gaps = 6/147 (4%)
Query: 52 PYKLDALEPY-MSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNP 110
P+ D L +SK+ + +H+ + H+GYV LN + L +++E+++
Sbjct: 8 PWGYDGLAAKGLSKQQVTLHYDKHHQGYVTKLNAAAQTNSALATKSIEEIIRTEKG---- 63
Query: 111 LPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGS 170
P+FN A Q++NH F+WESM P GG P V ++I FGSF FKE+F A+ FGS
Sbjct: 64 -PIFNLAAQIFNHTFYWESMXPNGGGEPTGKVADEINASFGSFAKFKEEFTNVAVGHFGS 122
Query: 171 GYVWLVLKREERRLAVVKTSNAINPLV 197
G+ WLV +L V +T +A PL
Sbjct: 123 GWAWLVKDTNSGKLKVYQTHDAGCPLT 149
>pdb|1QNN|A Chain A, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|B Chain B, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|C Chain C, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|D Chain D, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1UER|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|B Chain B, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|C Chain C, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|D Chain D, Crystal Structure Of Porphyromonas Gingivalis Sod
Length = 191
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 85/149 (57%), Gaps = 7/149 (4%)
Query: 48 LKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNS 107
L + PY +DAL P +SK T+E H G+ + YV+ LNK + + L+ +V+ S
Sbjct: 5 LISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTE-FENADLNTIVQKSEGG 63
Query: 108 GNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTL 167
+FNNA Q NH+ ++ +PG G PK + E I+K FGSF FKE+F A TL
Sbjct: 64 -----IFNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTL 118
Query: 168 FGSGYVWLVLKREERRLAVVKTSNAINPL 196
FGSG+VWL +L++ K NA NP+
Sbjct: 119 FGSGWVWLA-SDANGKLSIEKEPNAGNPV 146
>pdb|1Y67|A Chain A, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|B Chain B, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|C Chain C, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|D Chain D, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|2AW9|A Chain A, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
pdb|2AW9|B Chain B, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
Length = 229
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 88/162 (54%), Gaps = 11/162 (6%)
Query: 43 IAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKD---DVLYGYTLDE 99
+A Y L PY DALEP++ RT+E+H + H+ YV+ NK L D+ + +
Sbjct: 1 MAAYTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQ 60
Query: 100 LVKVSYNSGNPLPVFNNAVQVWNHDFFWESMQPG----GGDIPKYGVLEQIEKDFGSFTN 155
L +V + L NNA NH FW+ M G G + P +L+ I FGSF
Sbjct: 61 LDRVPADKKGALR--NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDA 118
Query: 156 FKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197
FK+KF AA T FGSG+ WLV+K + +L VV T+N NPL+
Sbjct: 119 FKQKFEDAAKTRFGSGWAWLVVK--DGKLDVVSTANQDNPLM 158
>pdb|1UES|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|B Chain B, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|C Chain C, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|D Chain D, Crystal Structure Of Porphyromonas Gingivalis Sod
Length = 191
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 85/149 (57%), Gaps = 7/149 (4%)
Query: 48 LKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNS 107
L + PY +DAL P +SK T+E H G+ + YV+ LNK + + L+ +V+ S
Sbjct: 5 LISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTE-FENADLNTIVQKSEGG 63
Query: 108 GNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTL 167
+FNNA Q NH+ ++ +PG G PK + E I+K FGSF FKE+F A TL
Sbjct: 64 -----IFNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTL 118
Query: 168 FGSGYVWLVLKREERRLAVVKTSNAINPL 196
FGSG+VWL +L++ K NA NP+
Sbjct: 119 FGSGWVWLA-SDANGKLSIEKEPNAGNPV 146
>pdb|3KKY|A Chain A, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
pdb|3KKY|B Chain B, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
Length = 211
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 86/159 (54%), Gaps = 11/159 (6%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKD---DVLYGYTLDELVK 102
Y L PY DALEP++ RT+E+H + H+ YV+ NK L D+ + +L +
Sbjct: 3 YTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDR 62
Query: 103 VSYNSGNPLPVFNNAVQVWNHDFFWESMQPG----GGDIPKYGVLEQIEKDFGSFTNFKE 158
V + L NNA NH FW+ M G G + P +L+ I FGSF FK+
Sbjct: 63 VPADKKGALR--NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQ 120
Query: 159 KFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197
KF AA T FGSG+ WLV+K + +L VV T+N NPL+
Sbjct: 121 KFEDAAKTRFGSGWAWLVVK--DGKLDVVSTANQDNPLM 157
>pdb|2CDY|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|C Chain C, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|D Chain D, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
Length = 231
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 86/159 (54%), Gaps = 11/159 (6%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKD---DVLYGYTLDELVK 102
Y L PY DALEP++ RT+E+H + H+ YV+ NK L D+ + +L +
Sbjct: 23 YTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDR 82
Query: 103 VSYNSGNPLPVFNNAVQVWNHDFFWESMQPG----GGDIPKYGVLEQIEKDFGSFTNFKE 158
V + L NNA NH FW+ M G G + P +L+ I FGSF FK+
Sbjct: 83 VPADKKGALR--NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQ 140
Query: 159 KFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197
KF AA T FGSG+ WLV+K + +L VV T+N NPL+
Sbjct: 141 KFEDAAKTRFGSGWAWLVVK--DGKLDVVSTANQDNPLM 177
>pdb|3CEI|A Chain A, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
pdb|3CEI|B Chain B, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
Length = 213
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 7/152 (4%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSY 105
+ L+ P+ D++ ++S + H G+ H+ YV LN + D L K
Sbjct: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFAILTK--- 58
Query: 106 NSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAAL 165
+SG VFNNA Q++NHDF+W+ + P + + +EKDFGS FKE FI +A
Sbjct: 59 SSGG---VFNNAAQIYNHDFYWDCLSPKATALSD-ELKGALEKDFGSLEKFKEDFIKSAT 114
Query: 166 TLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197
TLFGSG+ W + +++ +++TSNA P+
Sbjct: 115 TLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVT 146
>pdb|4F2N|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|E Chain E, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|F Chain F, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|G Chain G, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|H Chain H, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|I Chain I, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|J Chain J, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|K Chain K, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|L Chain L, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
Length = 230
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 78/143 (54%), Gaps = 6/143 (4%)
Query: 56 DALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFN 115
D ++P MS R LE+H+ + H YV+ LN L K G T++E++ + +FN
Sbjct: 44 DGIQPVMSPRQLELHYSKHHSAYVDKLNT-LGKG--YEGKTIEEIILATTGINESKVMFN 100
Query: 116 NAVQVWNHDFFWESMQPGGGDIPKYGVLEQ-IEKDFGSFTNFKEKFIGAALTLFGSGYVW 174
A Q +NH FFW+ + PGG +PK LE I K FGS +F F A + FGSG+ W
Sbjct: 101 QAAQHFNHSFFWKCLSPGGKPMPK--TLENAIAKQFGSVDDFMVSFQQAGVNNFGSGWTW 158
Query: 175 LVLKREERRLAVVKTSNAINPLV 197
L + + + L + TSNA PL
Sbjct: 159 LCVDPQTKELLIDSTSNAGCPLT 181
>pdb|1XUQ|A Chain A, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XUQ|B Chain B, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution
Length = 212
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 79/161 (49%), Gaps = 12/161 (7%)
Query: 43 IAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVK 102
+A + L PY DALEP+ K T+ +H + H Y+ LN L L +++ELV
Sbjct: 10 MAKHELPNLPYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVA 69
Query: 103 VSYNSGNPLP------VFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNF 156
+ N +P V NN NH FFW + P GG P + IE FGSF F
Sbjct: 70 ----NLNEVPEAIRTAVRNNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAF 125
Query: 157 KEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197
KE+F A T FGSG+ WLV+ E L V T N +PL
Sbjct: 126 KEEFAKAGATRFGSGWAWLVVNNGE--LEVTSTPNQDSPLT 164
>pdb|1I08|A Chain A, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|B Chain B, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|C Chain C, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|D Chain D, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
Length = 205
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 86/157 (54%), Gaps = 12/157 (7%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELV-KVS 104
Y L + PY DALEP+ K+T+E+H + H+ YV N L ++EL+ K+
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKAHQTYVNNANAALESLPEFANLPVEELITKLD 61
Query: 105 YNSGNPLPVF-NNAVQVWNHDFFWESMQPGG---GDIPKYGVLEQIEKDFGSFTNFKEKF 160
+ V NNA NH FW+ ++ G GD+ IE+DFGS NFK +F
Sbjct: 62 QLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKA-----AIERDFGSVDNFKAEF 116
Query: 161 IGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197
AA + FGSG+ WLVLK + +LAVV T+N +PL+
Sbjct: 117 EKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLM 151
>pdb|1VEW|A Chain A, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|B Chain B, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|C Chain C, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|D Chain D, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1MMM|A Chain A, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1MMM|B Chain B, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1D5N|A Chain A, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|B Chain B, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|C Chain C, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|D Chain D, Crystal Structure Of E. Coli Mnsod At 100k
pdb|3K9S|A Chain A, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|B Chain B, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|C Chain C, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|D Chain D, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3OT7|A Chain A, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|B Chain B, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|C Chain C, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|D Chain D, Escherichia Coli Apo-Manganese Superoxide Dismutase
Length = 205
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 86/157 (54%), Gaps = 12/157 (7%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELV-KVS 104
Y L + PY DALEP+ K+T+E+H + H+ YV N L ++EL+ K+
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLD 61
Query: 105 YNSGNPLPVF-NNAVQVWNHDFFWESMQPGG---GDIPKYGVLEQIEKDFGSFTNFKEKF 160
+ V NNA NH FW+ ++ G GD+ IE+DFGS NFK +F
Sbjct: 62 QLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKA-----AIERDFGSVDNFKAEF 116
Query: 161 IGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197
AA + FGSG+ WLVLK + +LAVV T+N +PL+
Sbjct: 117 EKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLM 151
>pdb|1I0H|A Chain A, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1I0H|B Chain B, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1IX9|A Chain A, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IX9|B Chain B, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|A Chain A, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|B Chain B, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1ZLZ|A Chain A, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
pdb|1ZLZ|B Chain B, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
Length = 205
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 86/157 (54%), Gaps = 12/157 (7%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELV-KVS 104
Y L + PY DALEP+ K+T+E+H + H+ YV N L ++EL+ K+
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLD 61
Query: 105 YNSGNPLPVF-NNAVQVWNHDFFWESMQPGG---GDIPKYGVLEQIEKDFGSFTNFKEKF 160
+ V NNA NH FW+ ++ G GD+ IE+DFGS NFK +F
Sbjct: 62 QLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKA-----AIERDFGSVDNFKAEF 116
Query: 161 IGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197
AA + FGSG+ WLVLK + +LAVV T+N +PL+
Sbjct: 117 EKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLM 151
>pdb|1EN4|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
Length = 205
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 86/157 (54%), Gaps = 12/157 (7%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELV-KVS 104
Y L + PY DALEP+ K+T+E+H + H+ YV N L ++EL+ K+
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLD 61
Query: 105 YNSGNPLPVF-NNAVQVWNHDFFWESMQPGG---GDIPKYGVLEQIEKDFGSFTNFKEKF 160
+ V NNA NH FW+ ++ G GD+ IE+DFGS NFK +F
Sbjct: 62 QLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKA-----AIERDFGSVDNFKAEF 116
Query: 161 IGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197
AA + FGSG+ WLVLK + +LAVV T+N +PL+
Sbjct: 117 EKAAASRFGSGWAWLVLKGD--KLAVVSTANHDSPLM 151
>pdb|1EN6|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
Length = 205
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 86/157 (54%), Gaps = 12/157 (7%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELV-KVS 104
Y L + PY DALEP+ K+T+E+H + H+ YV N L ++EL+ K+
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLD 61
Query: 105 YNSGNPLPVF-NNAVQVWNHDFFWESMQPGG---GDIPKYGVLEQIEKDFGSFTNFKEKF 160
+ V NNA NH FW+ ++ G GD+ IE+DFGS NFK +F
Sbjct: 62 QLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKA-----AIERDFGSVDNFKAEF 116
Query: 161 IGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197
AA + FGSG+ WLVLK + +LAVV T+N +PL+
Sbjct: 117 EKAAASRFGSGWAWLVLKGD--KLAVVSTANLDSPLM 151
>pdb|1EN5|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
Length = 205
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 86/157 (54%), Gaps = 12/157 (7%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELV-KVS 104
Y L + PY DALEP+ K+T+E+H + H+ +V N L ++EL+ K+
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTFVNNANAALESLPEFANLPVEELITKLD 61
Query: 105 YNSGNPLPVF-NNAVQVWNHDFFWESMQPGG---GDIPKYGVLEQIEKDFGSFTNFKEKF 160
+ V NNA NH FW+ ++ G GD+ IE+DFGS NFK +F
Sbjct: 62 QLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKA-----AIERDFGSVDNFKAEF 116
Query: 161 IGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197
AA + FGSG+ WLVLK + +LAVV T+N +PL+
Sbjct: 117 EKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLM 151
>pdb|2RCV|A Chain A, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|B Chain B, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|C Chain C, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|D Chain D, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|E Chain E, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|F Chain F, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|G Chain G, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|H Chain H, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
Length = 202
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 77/153 (50%), Gaps = 4/153 (2%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKV-- 103
Y L PY DALEP++ K T+ +H + H YV LNK + + L +++ELV
Sbjct: 3 YELPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADLD 62
Query: 104 SYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGA 163
S V NN NH FW + P GG P + E+I FGSF FKE+F A
Sbjct: 63 SVPENIRTAVRNNGGGHANHKLFWTLLSPNGGGEPTGALAEEINSVFGSFDKFKEQFAAA 122
Query: 164 ALTLFGSGYVWLVLKREERRLAVVKTSNAINPL 196
A FGSG+ WLV+ +L + T N +PL
Sbjct: 123 AAGRFGSGWAWLVVNN--GKLEITSTPNQDSPL 153
>pdb|1GV3|A Chain A, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
pdb|1GV3|B Chain B, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
Length = 248
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 79/152 (51%), Gaps = 11/152 (7%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPL 111
PY DALE + T+++H + H YV LN L K L +++ L++ N +
Sbjct: 44 PYGYDALEKAIDAETMKLHHDKHHAAYVNNLNNALKKHPELQNSSVEALLR----DLNSV 99
Query: 112 P------VFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAAL 165
P V NN NH FW+ M P GG P + ++I + FGSF FK++F A
Sbjct: 100 PEDIRTTVRNNGGGHLNHTIFWQIMSPDGGGQPTGDIAQEINQTFGSFEEFKKQFNQAGG 159
Query: 166 TLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197
FGSG+VWLV + + +L VV T N NP++
Sbjct: 160 DRFGSGWVWLV-RNPQGQLQVVSTPNQDNPIM 190
>pdb|1XRE|A Chain A, Crystal Structure Of Soda-2 (Ba5696) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XRE|B Chain B, Crystal Structure Of Soda-2 (Ba5696) From Bacillus
Anthracis At 1.8a Resolution
Length = 217
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 77/150 (51%), Gaps = 12/150 (8%)
Query: 53 YKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLP 112
Y D LEPY+ TL +H G+ H YV LN L L+ +L+EL+ + LP
Sbjct: 20 YDYDELEPYIDSNTLSIHHGKHHATYVNNLNAALENYSELHNKSLEELLC----NLETLP 75
Query: 113 ------VFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALT 166
V NN + H FWE M P GG P V + I+ F +F N K++ AA++
Sbjct: 76 KEIVTAVRNNGGGHYCHSLFWEVMSPRGGGEPNGDVAKVIDYYFNTFDNLKDQLSKAAIS 135
Query: 167 LFGSGYVWLVLKREERRLAVVKTSNAINPL 196
FGSGY WLVL EE L+V+ T N PL
Sbjct: 136 RFGSGYGWLVLDGEE--LSVMSTPNQDTPL 163
>pdb|2CW3|A Chain A, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
pdb|2CW3|B Chain B, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
Length = 280
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 85/154 (55%), Gaps = 8/154 (5%)
Query: 47 GLK-TPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSY 105
GL+ T PY L+ALEP +S T++ H+ + H+GY++ L + L LV +
Sbjct: 79 GLRMTLPYGLEALEPVISAATVDFHYNKHHQGYIQKLLDATGLPESRI--NLKSLVTLGP 136
Query: 106 NSGNPLPVFNNAVQVWNHDFFWESMQPGGGD---IPKYGVLEQIEKDFGSFTNFKEKFIG 162
+ VFN A Q++NH+ +W SM P G +P +L+ I +G+ KE F+
Sbjct: 137 DRAGE-NVFNAAGQIYNHNMYWLSMVPTSGSGRHVPPR-LLKLIRARWGNVDEMKENFMR 194
Query: 163 AALTLFGSGYVWLVLKREERRLAVVKTSNAINPL 196
A LFGSG++WLV ERRL +V T +A +PL
Sbjct: 195 KATALFGSGWIWLVWDTRERRLDLVGTKDAHSPL 228
>pdb|1EM1|A Chain A, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
pdb|1EM1|B Chain B, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
Length = 198
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 78/152 (51%), Gaps = 20/152 (13%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H YV LN + LAK DV L +K
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALK-- 65
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
+N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 66 FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSNAINPL 196
+ + GSG+ WL +E L + NA +PL
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPNA-DPL 146
>pdb|1N0N|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
pdb|1N0N|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
Length = 199
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 75/147 (51%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H ++H YV LN + LAK DV L +K
Sbjct: 9 PYDYGALEPHINAQIMQLHHSKVHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALK-- 66
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
+N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 67 FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 116
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 117 VGVQGSGWGWLGFNKERGHLQIAACPN 143
>pdb|1LUW|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUW|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
Length = 198
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H YV LN + LAK DV L +K
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKQHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALK-- 65
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
+N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 66 FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN 142
>pdb|1JA8|A Chain A, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
pdb|1JA8|B Chain B, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
Length = 198
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H YV LN + LAK DV L +K
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALK-- 65
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
+N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 66 FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN 142
>pdb|3C3S|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
pdb|3C3S|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
Length = 198
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H YV LN + LAK DV L +K
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALK-- 65
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
+N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 66 FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN 142
>pdb|1PL4|A Chain A, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|B Chain B, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|C Chain C, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|D Chain D, Crystal Structure Of Human Mnsod Y166f Mutant
Length = 198
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H YV LN + LAK DV L +K
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALK-- 65
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
+N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 66 FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN 142
>pdb|1N0J|A Chain A, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
pdb|1N0J|B Chain B, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
Length = 199
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H YV LN + LAK DV L +K
Sbjct: 9 PYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALK-- 66
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
+N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 67 FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 116
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 117 VGVQGSGWGWLGFNKERGHLQIAACPN 143
>pdb|3C3T|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
pdb|3C3T|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
Length = 198
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H YV LN + LAK DV L +K
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALK-- 65
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
+N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 66 FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN 142
>pdb|1VAR|A Chain A, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
pdb|1VAR|B Chain B, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
Length = 198
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H YV LN + LAK DV L +K
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQTALQPALK-- 65
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
+N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 66 FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN 142
>pdb|1MSD|A Chain A, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1MSD|B Chain B, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1LUV|A Chain A, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUV|B Chain B, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|2ADQ|B Chain B, Human Manganese Superoxide Dismutase
Length = 198
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H YV LN + LAK DV L +K
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALK-- 65
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
+N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 66 FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN 142
>pdb|1QNM|A Chain A, Human Manganese Superoxide Dismutase Mutant Q143n
pdb|1QNM|B Chain B, Human Manganese Superoxide Dismutase Mutant Q143n
Length = 198
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H YV LN + LAK DV L +K
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALK-- 65
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
+N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 66 FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN 142
>pdb|1PM9|A Chain A, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
pdb|1PM9|B Chain B, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
Length = 198
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H YV LN + LAK DV L +K
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKNHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALK-- 65
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
+N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 66 FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN 142
>pdb|2GDS|A Chain A, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|B Chain B, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|C Chain C, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|D Chain D, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
Length = 198
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H YV LN + LAK DV L +K
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKNHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALK-- 65
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
+N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 66 FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN 142
>pdb|2QKC|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKC|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H YV LN + LAK DV L +K+
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKL- 66
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 67 -NGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN 142
>pdb|2QKA|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKA|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 73/147 (49%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H YV LN + LAK DV L +K
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKA- 66
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 67 -NGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN 142
>pdb|1SZX|A Chain A, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
pdb|1SZX|B Chain B, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
Length = 198
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H +V LN + LAK DV L +K
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKHHAAFVNNLNVTEEKYQEALAKGDVTAQIALQPALK-- 65
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
+N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 66 FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 116 VGVQGSGFGWLGFNKERGHLQIAACPN 142
>pdb|1AP5|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP5|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
Length = 198
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H +V LN + LAK DV L +K
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKHHAAFVNNLNVTEEKYQEALAKGDVTAQIALQPALK-- 65
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
+N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 66 FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN 142
>pdb|1ZTE|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
Length = 198
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H +V LN + LAK DV L +K
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKHHAAHVNNLNVTEEKYQEALAKGDVTAQIALQPALK-- 65
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
+N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 66 FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN 142
>pdb|3MDS|A Chain A, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|3MDS|B Chain B, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|1MNG|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1MNG|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
Length = 203
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 79/156 (50%), Gaps = 5/156 (3%)
Query: 46 YGLKTPP--YKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVK- 102
Y K P Y +ALEP++ +T+E+H + H YV LN L K L+G ++ L++
Sbjct: 2 YPFKLPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRH 61
Query: 103 -VSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFI 161
+ V NN NH FW + PGG P + + I++ FG F KEK
Sbjct: 62 LAALPQDIQTAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLT 121
Query: 162 GAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197
AA+ FGSG+ WLV K +L V+ T N NP++
Sbjct: 122 QAAMGRFGSGWAWLV-KDPFGKLHVLSTPNQDNPVM 156
>pdb|1XIL|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
pdb|1XIL|B Chain B, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
Length = 198
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 19/153 (12%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLD 98
+ L P ALEP+++ + +++H + H +V LN + LAK DV L
Sbjct: 2 HSLPDLPXDXGALEPHINAQIMQLHHSKHHAAFVNNLNVTEEKXQEALAKGDVTAQIALQ 61
Query: 99 ELVKVSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKE 158
+K +N G + NH FW ++ P GG PK +LE I++DFGSF FKE
Sbjct: 62 PALK--FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKE 109
Query: 159 KFIGAALTLFGSGYVWLVLKREERRLAVVKTSN 191
K A++ + GSG+ WL +E L + N
Sbjct: 110 KLTAASVGVQGSGWGWLGFNKERGHLQIAACPN 142
>pdb|2ADP|A Chain A, Nitrated Human Manganese Superoxide Dismutase
Length = 198
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 73/147 (49%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H V LN + LAK DV L +K
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKHHAAXVNNLNVTEEKYQEALAKGDVTAQIALQPALK-- 65
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
+N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 66 FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN 142
>pdb|1ZUQ|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|1ZUQ|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 73/147 (49%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H V LN + LAK DV L +K
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKHHAAVVNNLNVTEEKYQEALAKGDVTAQIALQPALK-- 65
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
+N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 66 FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN 142
>pdb|1ZSP|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|1ZSP|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 73/147 (49%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H V LN + LAK DV L +K
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKHHAAAVNNLNVTEEKYQEALAKGDVTAQIALQPALK-- 65
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
+N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 66 FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN 142
>pdb|2P4K|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 73/147 (49%), Gaps = 19/147 (12%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLDELVKVS 104
PY ALEP+++ + +++H + H V LN + LAK DV L +K
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKHHAANVNNLNVTEEKYQEALAKGDVTAQIALQPALK-- 65
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAA 164
+N G + NH FW ++ P GG PK +LE I++DFGSF FKEK A+
Sbjct: 66 FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 165 LTLFGSGYVWLVLKREERRLAVVKTSN 191
+ + GSG+ WL +E L + N
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPN 142
>pdb|1JR9|A Chain A, Crystal Structure Of Manganese Superoxide Dismutases From
Bacillus Halodenitrificans
Length = 202
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 12/160 (7%)
Query: 44 AYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKV 103
A + L PY DALEP + K T+ +H + H YV LN L + L +L++L+
Sbjct: 1 AKFELPELPYAYDALEPTIDKETMNIHHTKHHNTYVTKLNGALEGHEDLKNKSLNDLI-- 58
Query: 104 SYNSGNPLP------VFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFK 157
++ + +P V NN NH FW+ M P GG P V ++I +GSF F+
Sbjct: 59 --SNLDAVPENIRTAVRNNGGGHANHSLFWKLMSPNGGGKPTGEVADKINDKYGSFEKFQ 116
Query: 158 EKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197
E+F AA FGSG+ WLV+ E + ++ T NPL+
Sbjct: 117 EEFAAAAAGRFGSGWAWLVVNNGE--IEIMSTPIQDNPLM 154
>pdb|1XDC|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
pdb|1XDC|B Chain B, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
Length = 198
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 19/153 (12%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLN-------KHLAKDDVLYGYTLD 98
+ L P ALEP+++ + +++H + H V LN + LAK DV L
Sbjct: 2 HSLPDLPXDXGALEPHINAQIMQLHHSKHHAAXVNNLNVTEEKXQEALAKGDVTAQIALQ 61
Query: 99 ELVKVSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKE 158
+K +N G + NH FW ++ P GG PK +LE I++DFGSF FKE
Sbjct: 62 PALK--FNGGGHI----------NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKE 109
Query: 159 KFIGAALTLFGSGYVWLVLKREERRLAVVKTSN 191
K A++ + GSG+ WL +E L + N
Sbjct: 110 KLTAASVGVQGSGWGWLGFNKERGHLQIAACPN 142
>pdb|4H3E|A Chain A, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
pdb|4H3E|B Chain B, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
Length = 241
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
Query: 56 DALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLY-GYTLDELVKVSYNSGNPLPVF 114
D P S R +E+H+ + H+ YV+ LN A Y G +++E++ N +F
Sbjct: 53 DGCAPVFSPRQMELHYTKHHKAYVDKLN---ALAGTTYDGKSIEEIILAVANDAEKKGLF 109
Query: 115 NNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVW 174
N A Q +NH F++ + P G +PK + FGS FK+ F+ A + FGSG+ W
Sbjct: 110 NQAAQHFNHTFYFRCITPNGKAMPK-SFESAVTAQFGSVEQFKDAFVQAGVNNFGSGWTW 168
Query: 175 LVLK-REERRLAVVKTSNAINPLV 197
L + + +L + TSNA PL
Sbjct: 169 LCVDPSNKNQLVIDNTSNAGCPLT 192
>pdb|1KKC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|X Chain X, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|Y Chain Y, Crystal Structure Of Aspergillus Fumigatus Mnsod
Length = 221
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 11/151 (7%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHL-AKDDVLYGYTLDELVKVS 104
Y L PY DAL+PY+S++ +E+H + H+ YV GLN L A+ + +LV V
Sbjct: 16 YTLPPLPYPYDALQPYISQQIMELHHKKHHQTYVNGLNAALEAQKKAAEATDVPKLVSVQ 75
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESMQP---GGGDIPKYGVLE-QIEKDFGSFTNFKEKF 160
FN + NH FW+++ P GGG I + VL+ IE+ +GSF FK+ F
Sbjct: 76 QAI-----KFNGGGHI-NHSLFWKNLAPEKSGGGKIDQAPVLKAAIEQRWGSFDKFKDAF 129
Query: 161 IGAALTLFGSGYVWLVLKREERRLAVVKTSN 191
L + GSG+ WLV + +L + T +
Sbjct: 130 NTTLLGIQGSGWGWLVTDGPKGKLDITTTHD 160
>pdb|1MA1|A Chain A, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|B Chain B, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|C Chain C, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|D Chain D, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|E Chain E, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|F Chain F, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
Length = 205
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 17/153 (11%)
Query: 45 YYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLD-----E 99
+Y L PY DALEP++S+ L +H + H+ YV+G N L K D D
Sbjct: 8 FYELPELPYPYDALEPHISREQLTIHHQKHHQAYVDGANALLRKLDEARESDTDVDIKAA 67
Query: 100 LVKVSYNSGNPLPVFNNAVQVWNHDFFWESMQPGG--GDIPKYGVLEQIEKDFGSFTNFK 157
L ++S++ G + H FFW +M P G P + E IEKDFGSF F+
Sbjct: 68 LKELSFHVGGYVL----------HLFFWGNMGPADECGGEPSGKLAEYIEKDFGSFERFR 117
Query: 158 EKFIGAALTLFGSGYVWLVLKREERRLAVVKTS 190
++F AA++ GSG+ L + RL +++
Sbjct: 118 KEFSQAAISAEGSGWAVLTYCQRTDRLFIMQVE 150
>pdb|1AR4|A Chain A, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR4|B Chain B, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR5|A Chain A, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AR5|B Chain B, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AVM|A Chain A, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1AVM|B Chain B, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1BS3|A Chain A, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BS3|B Chain B, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BSM|A Chain A, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BSM|B Chain B, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BT8|A Chain A, P.Shermanii Sod(Fe+3) Ph 10.0
pdb|1BT8|B Chain B, P.Shermanii Sod(Fe+3) Ph 10.0
Length = 201
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Query: 44 AYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKV 103
A Y L PY ALEPY+S +E+H + H+ YV+G N L K + K
Sbjct: 1 AVYTLPELPYDYSALEPYISGEIMELHHDKHHKAYVDGANTALDK-------LAEARDKA 53
Query: 104 SYNSGNPLP---VFNNAVQVWNHDFFWESMQPGGG--DIPKYGVLEQIEKDFGSFTNFKE 158
+ + N L FN A V NH FW++M P G + P + I++ FGSF N K
Sbjct: 54 DFGAINKLEKDLAFNLAGHV-NHSVFWKNMAPKGSAPERPTDELGAAIDEFFGSFDNMKA 112
Query: 159 KFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPL 196
+F AA + GSG+ LV +R+ ++ + N L
Sbjct: 113 QFTAAATGIQGSGWASLVWDPLGKRINTLQFYDHQNNL 150
>pdb|1WB8|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site.
pdb|1WB8|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site
Length = 210
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 22/157 (14%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLN------KHLAKDDVLYG-YTLD 98
Y L PYK+DALEPY+SK ++VH+ H+GYV G N + + K D+ G Y +
Sbjct: 9 YELPPLPYKIDALEPYISKDIIDVHYNGHHKGYVNGANSLLERLEKVVKGDLQTGQYDIQ 68
Query: 99 ELVK-VSYN-SGNPLPVFNNAVQVWNHDFFWESMQPG--GGDIPKYGVLEQIEKDFGSFT 154
+++ +++N +G+ L H +WE+M P GG P + + I K +GSF
Sbjct: 69 GIIRGLTFNINGHKL-----------HALYWENMAPSGKGGGKPGGALADLINKQYGSFD 117
Query: 155 NFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSN 191
FK+ F A +L G+G+ L E L ++ N
Sbjct: 118 RFKQVFTETANSLPGTGWAVLYYDTESGNLQIMTFEN 154
>pdb|1WB7|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. Crystal
Structure Of The Y41f Mutant.
pdb|1WB7|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. Crystal
Structure Of The Y41f Mutant
Length = 210
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 22/157 (14%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLN------KHLAKDDVLYG-YTLD 98
Y L PYK+DALEPY+SK ++VH+ H+G+V G N + + K D+ G Y +
Sbjct: 9 YELPPLPYKIDALEPYISKDIIDVHYNGHHKGFVNGANSLLERLEKVVKGDLQTGQYDIQ 68
Query: 99 ELVK-VSYN-SGNPLPVFNNAVQVWNHDFFWESMQPG--GGDIPKYGVLEQIEKDFGSFT 154
+++ +++N +G+ L H +WE+M P GG P + + I K +GSF
Sbjct: 69 GIIRGLTFNINGHKL-----------HALYWENMAPSGKGGGKPGGALADLINKQYGSFD 117
Query: 155 NFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSN 191
FK+ F A +L G+G+ L E L ++ N
Sbjct: 118 RFKQVFTETANSLPGTGWAVLYYDTESGNLQIMTFEN 154
>pdb|1GN6|A Chain A, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|B Chain B, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|C Chain C, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|D Chain D, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
Query: 43 IAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVK 102
+A Y L + ALEP++S + E+H + H YV+G N +AK + ++
Sbjct: 1 MAEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAK--LEEARAKEDHSA 58
Query: 103 VSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIG 162
+ N N FN A V NH +W+++ P GGD P + I FGSF F+ +F
Sbjct: 59 ILLNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHA 115
Query: 163 AALTLFGSGYV 173
AA T+ GSG+
Sbjct: 116 AATTVQGSGWA 126
>pdb|1IDS|A Chain A, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|B Chain B, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|C Chain C, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|D Chain D, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
Length = 207
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
Query: 43 IAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVK 102
+A Y L + ALEP++S + E+H + H YV+G N +AK + ++
Sbjct: 1 MAEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAK--LEEARAKEDHSA 58
Query: 103 VSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIG 162
+ N N FN A V NH +W+++ P GGD P + I FGSF F+ +F
Sbjct: 59 ILLNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHA 115
Query: 163 AALTLFGSGYV 173
AA T+ GSG+
Sbjct: 116 AATTVQGSGWA 126
>pdb|1GN4|A Chain A, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|B Chain B, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|C Chain C, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|D Chain D, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
Query: 43 IAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVK 102
+A Y L + ALEP++S + E+H + H YV+G N +AK + ++
Sbjct: 1 MAEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAK--LEEARAKEDHSA 58
Query: 103 VSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIG 162
+ N N FN A V NH +W+++ P GGD P + I FGSF F+ +F
Sbjct: 59 ILLNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHA 115
Query: 163 AALTLFGSGYV 173
AA T+ GSG+
Sbjct: 116 AATTVQGSGWA 126
>pdb|1GN3|A Chain A, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN3|B Chain B, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
Query: 43 IAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVK 102
+A Y L + ALEP++S + E+H + H YV+G N +AK + ++
Sbjct: 1 MAEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAK--LEEARAKEDHSA 58
Query: 103 VSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIG 162
+ N N FN A V NH +W+++ P GGD P + I FGSF F+ +F
Sbjct: 59 ILLNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHA 115
Query: 163 AALTLFGSGYV 173
AA T+ GSG+
Sbjct: 116 AATTVQGSGWA 126
>pdb|1GN2|A Chain A, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|B Chain B, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|C Chain C, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|D Chain D, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|E Chain E, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|F Chain F, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|G Chain G, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|H Chain H, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis
Length = 207
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 43 IAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVK 102
+A Y L + ALEP++S + E+H + H YV+G N +AK + ++
Sbjct: 1 MAEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAK--LEEARAKEDHSA 58
Query: 103 VSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIG 162
+ N N FN A V NH +W+++ P GGD P + I FGSF F+ +F
Sbjct: 59 ILLNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHA 115
Query: 163 AALTLFGSGYVWL 175
AA T+ G G+ L
Sbjct: 116 AATTVQGCGWAAL 128
>pdb|1B06|A Chain A, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|B Chain B, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|C Chain C, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|D Chain D, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|E Chain E, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|F Chain F, Superoxide Dismutase From Sulfolobus Acidocaldarius
Length = 210
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 22/157 (14%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLN------KHLAKDDVLYG-YTLD 98
Y PYK+DALEPY+SK ++VH+ H+GYV G N + L K D+ G Y L
Sbjct: 9 YEFPQLPYKVDALEPYISKDIIDVHYNGHHKGYVNGANSLLDRLEKLIKGDLPQGQYDLQ 68
Query: 99 ELVK-VSYN-SGNPLPVFNNAVQVWNHDFFWESM--QPGGGDIPKYGVLEQIEKDFGSFT 154
+++ +++N +G+ L H +W +M GG P + + I+K +GSF
Sbjct: 69 GILRGLTFNINGHKL-----------HAIYWNNMAPAGKGGGKPGGALADLIDKQYGSFD 117
Query: 155 NFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSN 191
FK+ F +A +L GSG+ L E L ++ N
Sbjct: 118 RFKQVFSESANSLPGSGWTVLYYDNESGNLQIMTVEN 154
>pdb|3DC5|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC5|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 195
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 9/146 (6%)
Query: 52 PYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAK-DDVLYGYTLDELVKVSYNSGNP 110
P+ LEP +S +++H + H YV LN+ K + + L E + + P
Sbjct: 9 PFDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSKGNLKEAIALQ-----P 63
Query: 111 LPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGS 170
FN + NH FW ++ GG+ P +++ I++DFGS N +++ + + GS
Sbjct: 64 ALKFNGGGHI-NHSIFWTNLAKDGGE-PSKELMDTIKRDFGSLDNLQKRLSDITIAVQGS 121
Query: 171 GYVWLVLKREERRLAVVKTSNAINPL 196
G+ WL ++++ L + +N +PL
Sbjct: 122 GWGWLGYCKKDKILKIATCANQ-DPL 146
>pdb|3DC6|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC6|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 198
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSY 105
+ L PY LEP +S +++H + H YV LN+ ++E + +
Sbjct: 3 HSLPDLPYDYADLEPVISHEIMQLHHQKHHATYVNNLNQ------------IEEKLHEAV 50
Query: 106 NSGN--------PLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFK 157
+ GN P FN + NH FW ++ GG+ P +L I+ DFGS N +
Sbjct: 51 SKGNVKEAIALQPALKFNGGGHI-NHSIFWTNLAKDGGE-PSAELLTAIKSDFGSLDNLQ 108
Query: 158 EKFIGAALTLFGSGYVWLVLKREERRLAVVKTSN 191
++ + + + GSG+ WL + + L V +N
Sbjct: 109 KQLSASTVAVQGSGWGWLGYCPKGKILKVATCAN 142
>pdb|3EVK|A Chain A, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|B Chain B, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|C Chain C, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|D Chain D, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
Length = 222
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 9/148 (6%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAK-DDVLYGYTLDELVKVS 104
Y L PY +ALEPY+S +++H + H+GYV G N L K + G ++ V
Sbjct: 18 YTLPPLPYAYNALEPYISAEIMQLHHQKHHQGYVNGANAALEKLEKFRKGEAQIDIRAVL 77
Query: 105 YNSGNPLPVFNNAVQVWNHDFFWESM--QPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIG 162
+ L N + H FW +M GG P + + I K FGSF FKE+F
Sbjct: 78 RDLSFHL---NGHIL---HSIFWPNMAPPGKGGGKPGGKIADLINKFFGSFEKFKEEFSQ 131
Query: 163 AALTLFGSGYVWLVLKREERRLAVVKTS 190
AA + G G+ LV + E +L +++
Sbjct: 132 AAKNVEGVGWAILVYEPLEEQLLILQIE 159
>pdb|3QVN|A Chain A, Crystal Structure Of Cytosolic Mnsod3 From Candida
Albicans
Length = 206
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 13/146 (8%)
Query: 53 YKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHL-AKDDVLYGYTLDELVKVSYNSGNPL 111
+ LDALEPY+SK ++H + H YV G N + A + + L +V++ N
Sbjct: 15 WALDALEPYISKEINDLHINKHHVAYVNGYNAAIDALEKAVGKRDLKSVVEIQQNIK--- 71
Query: 112 PVFNNAVQVWNHDFFWESMQP---GGGDIP--KYGVLEQIEKDFGSFTNFKEKFIGAALT 166
F+ NH FW+++ P GGG P + +QI +GS +N +
Sbjct: 72 --FHGGGHT-NHSLFWKNLAPVSKGGGKHPDTSSALGKQIVAQYGSVSNLIDITNSKLAG 128
Query: 167 LFGSGYVWLVLKREE-RRLAVVKTSN 191
+ GSG+ ++V ++ L VV T+N
Sbjct: 129 IQGSGWAFIVKNKQNGGALDVVTTAN 154
>pdb|3AK1|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK2|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK3|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
Length = 214
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 70/152 (46%), Gaps = 9/152 (5%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSY 105
Y L PY +ALEPY+ + +++H + H YV+G N L K + L +++
Sbjct: 7 YELPPLPYNYNALEPYIIEEIMKLHHQKHHNTYVKGANAALEKIE----KHLKGEIQIDV 62
Query: 106 NSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYG--VLEQIEKDFGSFTNFKEKFIGA 163
+ FN A + H FW +M P G G V + IEK FG F FK F A
Sbjct: 63 RAVMRDFSFNYAGHI-MHTIFWPNMAPPGKGGGTPGGRVADLIEKQFGGFEKFKALFSAA 121
Query: 164 ALTLFGSGYVWLVLK--REERRLAVVKTSNAI 193
A T+ G G+ L EE R+ V+ N +
Sbjct: 122 AKTVEGVGWGVLAFDPLTEELRILQVEKHNVL 153
>pdb|4FFK|A Chain A, X-Ray Structure Of Iron Superoxide Dismutase From
Acidilobus Saccharovorans
Length = 223
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSY 105
Y L PY DALEP +S TL H + H GYV G N L D L Y +L +
Sbjct: 19 YELPPLPYNYDALEPIISAETLRYHHDKHHLGYVNGANAAL---DKLEKYLNGQLTDIDV 75
Query: 106 NSGNPLPVFNNAVQVWNHDFFWESMQ--PGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGA 163
+ + FN + H +W +M GG P + + I K FGSF FK+ F A
Sbjct: 76 RAVSRDFEFNYGGHIL-HTLYWLNMAPKGKGGGTPGGAIGDAINKFFGSFDKFKKLFGDA 134
Query: 164 ALTLFGSGYVWLV---LKREERRLAVVKTSNAI 193
A + G G+ L + + R L V K +N +
Sbjct: 135 AKNVEGVGWAILAYDPVTGDLRILQVEKHNNVV 167
>pdb|3RN4|A Chain A, Crystal Structure Of Iron-Substituted Sod2 From
Saccharomyces Cerevisiae
Length = 215
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 25/165 (15%)
Query: 51 PPYKLD--ALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSG 108
P K D ALEPY+S + E+H+ + H+ YV G N + + L +L+ +
Sbjct: 13 PDLKWDFGALEPYISGQINELHYTKHHQTYVNGFNTAVDQFQ-----ELSDLLAKEPSPA 67
Query: 109 NPLPVFNNAVQ---------VWNHDFFWESMQP---GGGDIPKYGVLEQIEKDFGSFTNF 156
N + A+Q NH FWE++ P GGG+ P + + I++ FGS
Sbjct: 68 NARKMI--AIQQNIKFHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDEL 125
Query: 157 KEKFIGAALTLFGSGYVWLVLKREE-RRLAVVKTSN---AINPLV 197
+ + GSG+ ++V +L VV+T N PLV
Sbjct: 126 IKLTNTKLAGVQGSGWAFIVKNLSNGGKLDVVQTYNQDTVTGPLV 170
>pdb|3BFR|A Chain A, The Crystal Structure Of Sod2 From Saccharomyces
Cerevisiae
Length = 215
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 25/165 (15%)
Query: 51 PPYKLD--ALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSG 108
P K D ALEPY+S + E+H+ + H+ YV G N + + L +L+ +
Sbjct: 13 PDLKWDFGALEPYISGQINELHYTKHHQTYVNGFNTAVDQFQ-----ELSDLLAKEPSPA 67
Query: 109 NPLPVFNNAVQ---------VWNHDFFWESMQP---GGGDIPKYGVLEQIEKDFGSFTNF 156
N + A+Q NH FWE++ P GGG+ P + + I++ FGS
Sbjct: 68 NARKMI--AIQQNIKFHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDEL 125
Query: 157 KEKFIGAALTLFGSGYVWLVLKREE-RRLAVVKTSN---AINPLV 197
+ + GSG+ ++V +L VV+T N PLV
Sbjct: 126 IKLTNTKLAGVQGSGWAFIVKNLSNGGKLDVVQTYNQDTVTGPLV 170
>pdb|3LSU|A Chain A, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|B Chain B, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|C Chain C, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|D Chain D, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
Length = 207
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 23/161 (14%)
Query: 53 YKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLP 112
+ ALEPY+S + E+H+ H+ YV G N + + L +L+ + N
Sbjct: 9 WDFGALEPYISGQINELHYTXHHQTYVNGFNTAVDQFQ-----ELSDLLAXEPSPANARX 63
Query: 113 VFNNAVQ---------VWNHDFFWESMQP---GGGDIPKYGVLEQIEKDFGSFTNFKEKF 160
+ A+Q NH FWE++ P GGG+ P + I++ FGS
Sbjct: 64 MI--AIQQNIXFHGGGFTNHCLFWENLAPESQGGGEPPTGALAXAIDEQFGSLDELIXLT 121
Query: 161 IGAALTLFGSGYVWLVLKREE-RRLAVVKTSN---AINPLV 197
+ GSG+ ++V L VV+T N PLV
Sbjct: 122 NTXLAGVQGSGWAFIVXNLSNGGXLDVVQTYNQDTVTGPLV 162
>pdb|4E4E|A Chain A, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|B Chain B, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|C Chain C, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|D Chain D, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
Length = 207
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 23/161 (14%)
Query: 53 YKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLP 112
+ ALEPY+S + E+H+ H+ +V G N + + L +L+ + N
Sbjct: 9 WDFGALEPYISGQINELHYTXHHQTFVNGFNTAVDQFQ-----ELSDLLAXEPSPANARX 63
Query: 113 VFNNAVQ---------VWNHDFFWESMQP---GGGDIPKYGVLEQIEKDFGSFTNFKEKF 160
+ A+Q NH FWE++ P GGG+ P + I++ FGS
Sbjct: 64 MI--AIQQNIXFHGGGFTNHCLFWENLAPESQGGGEPPTGALAXAIDEQFGSLDELIXLT 121
Query: 161 IGAALTLFGSGYVWLVLKREE-RRLAVVKTSN---AINPLV 197
+ GSG+ ++V L VV+T N PLV
Sbjct: 122 NTXLAGVQGSGWAFIVXNLSNGGXLDVVQTYNQDTVTGPLV 162
>pdb|1P7G|A Chain A, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|B Chain B, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|C Chain C, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|D Chain D, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|E Chain E, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|F Chain F, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|G Chain G, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|H Chain H, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|I Chain I, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|J Chain J, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|K Chain K, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|L Chain L, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|M Chain M, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|N Chain N, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|O Chain O, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|P Chain P, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|Q Chain Q, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|R Chain R, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|S Chain S, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|T Chain T, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|U Chain U, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|V Chain V, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|W Chain W, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|X Chain X, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
Length = 222
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 9/148 (6%)
Query: 46 YGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAK-DDVLYGYTLDELVKVS 104
Y L PY +ALEPY+S ++H + H+GYV G N L K + G ++ V
Sbjct: 18 YTLPPLPYAYNALEPYISAEIXQLHHQKHHQGYVNGANAALEKLEKFRKGEAQIDIRAVL 77
Query: 105 YNSGNPLPVFNNAVQVWNHDFFW--ESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIG 162
+ L N + H FW + GG P + + I K FGSF FKE+F
Sbjct: 78 RDLSFHL---NGHIL---HSIFWPNXAPPGKGGGKPGGKIADLINKFFGSFEKFKEEFSQ 131
Query: 163 AALTLFGSGYVWLVLKREERRLAVVKTS 190
AA + G G+ LV + E +L +++
Sbjct: 132 AAKNVEGVGWAILVYEPLEEQLLILQIE 159
>pdb|1O70|A Chain A, Novel Fold Revealed By The Structure Of A Fas1 Domain Pair
From The Insect Cell Adhesion Molecule Fasciclin I
Length = 324
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 16 LLLNPSKIPKFCHSRRQLHGSQRASKIIAYYGLKTPPYKLDALE-PYMSKRTLEVHWGEL 74
++ + K+ KF H QL+ +QR Y+ + ++ L+ P K+ +
Sbjct: 170 MMSDTYKMGKFSHFNDQLNNTQRR---FTYFVPRDKGWQKTELDYPSAHKKLFMADFSYH 226
Query: 75 HRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNP-LPVFNNAVQV 120
+ +E +HLA D YT+ +LVK S SG+ LP F +++ +
Sbjct: 227 SKSILE---RHLAISD--KEYTMKDLVKFSQESGSVILPTFRDSLSI 268
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 85 HLAKDDVLYGYTLDELVKV-------SYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDI 137
LAK+ L Y ++E+ ++ SY P P N + +H+ FW +M G +I
Sbjct: 69 RLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREI 128
Query: 138 P 138
P
Sbjct: 129 P 129
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 85 HLAKDDVLYGYTLDELVKV-------SYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDI 137
LAK+ L Y ++E+ ++ SY P P N + +H+ FW +M G +I
Sbjct: 69 RLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREI 128
Query: 138 P 138
P
Sbjct: 129 P 129
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 85 HLAKDDVLYGYTLDELVKV-------SYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDI 137
LAK+ L Y ++E+ ++ SY P P N + +H+ FW +M G +I
Sbjct: 70 RLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREI 129
Query: 138 P 138
P
Sbjct: 130 P 130
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 85 HLAKDDVLYGYTLDELVKV-------SYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDI 137
LAK+ L Y ++E+ ++ SY P P N + +H+ FW +M G +I
Sbjct: 70 RLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREI 129
Query: 138 P 138
P
Sbjct: 130 P 130
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 85 HLAKDDVLYGYTLDELVKV-------SYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDI 137
LAK+ L Y ++E+ ++ SY P P N + +H+ FW +M G +I
Sbjct: 70 RLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREI 129
Query: 138 P 138
P
Sbjct: 130 P 130
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 85 HLAKDDVLYGYTLDELVKV-------SYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDI 137
LAK+ L Y ++E+ ++ SY P P N + +H+ FW +M G +I
Sbjct: 70 RLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREI 129
Query: 138 P 138
P
Sbjct: 130 P 130
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 85 HLAKDDVLYGYTLDELVKV-------SYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDI 137
LAK+ L Y ++E+ ++ SY P P N + +H+ FW +M G +I
Sbjct: 70 RLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREI 129
Query: 138 P 138
P
Sbjct: 130 P 130
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 85 HLAKDDVLYGYTLDELVKV-------SYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDI 137
LAK+ L Y ++E+ ++ SY P P N + +H+ FW +M G +I
Sbjct: 70 RLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREI 129
Query: 138 P 138
P
Sbjct: 130 P 130
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 85 HLAKDDVLYGYTLDELVKV-------SYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDI 137
LAK+ L Y ++E+ ++ SY P P N + +H+ FW +M G +I
Sbjct: 70 RLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREI 129
Query: 138 P 138
P
Sbjct: 130 P 130
>pdb|1COJ|A Chain A, Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic
Bacterium
Length = 212
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 11/120 (9%)
Query: 62 MSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVS--YNSGNPLPVFN--NA 117
+S +E H+ ++GYV N+ K L + K + Y+ L V N
Sbjct: 19 ISNEQIEPHFEAHYKGYVAKYNEIQEK---LADQNFADRSKANQNYSEYRELKVEETFNY 75
Query: 118 VQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVL 177
+ V H+ ++ + PGG P + ++IE+D G + AA+ G W +L
Sbjct: 76 MGVVLHELYFGMLTPGGKGEPSEALKKKIEEDIGGLDACTNELKAAAMAFRG----WAIL 131
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 162 GAALTLFGSGYVWLVLKRE 180
A L + GSGYVWLV +RE
Sbjct: 215 AAMLNMTGSGYVWLVGERE 233
>pdb|3U07|A Chain A, Crystal Structure Of The Vpa0106 Protein From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr106.
pdb|3U07|B Chain B, Crystal Structure Of The Vpa0106 Protein From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr106.
pdb|3U07|C Chain C, Crystal Structure Of The Vpa0106 Protein From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr106
Length = 443
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 78 YVEGLNKHLAKDDVLYGYTLDELVKVSYNSG----NPLPVFNN 116
+ N LA+D +YGY++DE K Y++ PL F N
Sbjct: 21 FAANTNVDLAEDAYIYGYSIDEAYKFFYHTAVENNYPLNEFQN 63
>pdb|4HN9|A Chain A, Crystal Structure Of Iron Abc Transporter Solute-Binding
Protein From Eubacterium Eligens
pdb|4HN9|B Chain B, Crystal Structure Of Iron Abc Transporter Solute-Binding
Protein From Eubacterium Eligens
Length = 335
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 95 YTLDELVKVSYNSGNPLPVFNNAVQVWNHDFFWESMQPGG--GDIPKYGVL--EQIEKDF 150
YT+D+++ + +G N V++ N+ W+S PG G I VL E++ KDF
Sbjct: 257 YTVDDILNDANLAGCNAVKNKNVVKLPNNIEAWDSPVPGSFLGSIYIASVLHPEKVTKDF 316
Query: 151 --GSFTNFKEKFIG 162
T F E F G
Sbjct: 317 YETCVTKFYESFYG 330
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,929,297
Number of Sequences: 62578
Number of extensions: 305601
Number of successful extensions: 878
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 104
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)