Query 028732
Match_columns 204
No_of_seqs 173 out of 1137
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 16:07:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0605 SodA Superoxide dismut 100.0 5.2E-58 1.1E-62 384.8 16.5 157 44-203 2-160 (204)
2 PLN02622 iron superoxide dismu 100.0 1.6E-57 3.4E-62 395.3 18.0 198 6-203 1-205 (261)
3 PLN02184 superoxide dismutase 100.0 4.4E-57 9.6E-62 382.7 16.3 162 39-203 4-165 (212)
4 PRK10543 superoxide dismutase; 100.0 2.1E-56 4.5E-61 373.8 16.5 153 44-203 1-153 (193)
5 PLN02685 iron superoxide dismu 100.0 2.9E-55 6.2E-60 386.4 17.7 161 42-203 43-218 (299)
6 PRK10925 superoxide dismutase; 100.0 6.3E-55 1.4E-59 368.1 16.1 156 44-203 1-164 (206)
7 PTZ00078 Superoxide dismutase 100.0 1.5E-52 3.2E-57 350.6 16.0 148 49-203 1-149 (193)
8 PLN02471 superoxide dismutase 100.0 2.5E-51 5.4E-56 351.2 15.0 154 44-203 29-188 (231)
9 KOG0876 Manganese superoxide d 100.0 2.1E-51 4.5E-56 348.4 13.9 176 27-203 9-188 (234)
10 PF00081 Sod_Fe_N: Iron/mangan 100.0 1.7E-33 3.7E-38 206.1 4.9 82 45-131 1-82 (82)
11 PF02777 Sod_Fe_C: Iron/mangan 99.9 4.9E-23 1.1E-27 156.8 7.2 68 136-203 1-68 (106)
12 PF13348 Y_phosphatase3C: Tyro 58.8 11 0.00024 25.6 2.8 19 141-159 33-51 (68)
13 PF05416 Peptidase_C37: Southa 48.7 11 0.00023 36.0 1.7 21 167-191 377-397 (535)
14 COG4700 Uncharacterized protei 46.7 16 0.00036 31.5 2.4 21 69-89 228-248 (251)
15 PF13185 GAF_2: GAF domain; PD 46.5 49 0.0011 24.2 4.9 38 153-192 4-43 (148)
16 PF07338 DUF1471: Protein of u 32.7 1.5E+02 0.0033 19.7 5.1 38 149-186 13-50 (56)
17 TIGR02118 conserved hypothetic 32.1 40 0.00087 24.6 2.3 22 60-82 10-31 (100)
18 PF12826 HHH_2: Helix-hairpin- 31.7 30 0.00066 23.5 1.5 32 140-171 13-44 (64)
19 PF08025 Antimicrobial_3: Spid 31.0 65 0.0014 19.7 2.6 26 140-165 7-32 (37)
20 PF01666 DX: DX module; Inter 30.6 50 0.0011 23.7 2.5 24 170-193 16-39 (76)
21 PF07110 EthD: EthD domain; I 28.3 53 0.0012 22.9 2.4 22 60-81 1-22 (95)
22 PF13537 GATase_7: Glutamine a 27.5 80 0.0017 23.9 3.3 73 118-198 30-106 (125)
23 KOG0394 Ras-related GTPase [Ge 26.9 40 0.00087 28.8 1.7 20 146-165 93-112 (210)
24 cd01935 Ntn_CGH_like Choloylgl 25.6 3E+02 0.0065 22.6 6.8 52 135-187 95-153 (229)
25 COG4867 Uncharacterized protei 25.3 1.5E+02 0.0033 28.5 5.3 48 123-175 239-288 (652)
26 PF12872 OST-HTH: OST-HTH/LOTU 25.2 52 0.0011 22.2 1.8 23 153-175 3-26 (74)
27 PF09418 DUF2009: Protein of u 20.6 1.3E+02 0.0029 28.7 4.0 32 140-171 381-414 (458)
No 1
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-58 Score=384.77 Aligned_cols=157 Identities=41% Similarity=0.740 Sum_probs=146.5
Q ss_pred cccccCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCChh-hhcCCHHHHHHHHhcCCCCCcceechhhhhh
Q 028732 44 AYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDV-LYGYTLDELVKVSYNSGNPLPVFNNAVQVWN 122 (204)
Q Consensus 44 ~~~~lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~~~~-~~~~~l~~ii~~~~~~~~~~~ifnnag~~~N 122 (204)
+.|+||+|||+|++|||+||++||++||+||||+||++||+++++.++ +++.+++++++....... .++||+|||+|
T Consensus 2 ~~~~Lp~Lpy~y~ALeP~is~et~~~Hh~kHH~~YV~~lN~~~~~~~~~~~~~~~e~~~~~~~~~~~--~~~nn~~gh~N 79 (204)
T COG0605 2 MAYELPELPYAYDALEPHISAETMELHHDKHHQTYVNNLNAALEGLTEELEDLSLEEIIKKLAGLPA--ALFNNAGGHWN 79 (204)
T ss_pred CCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHhcccH--HHHhcchhhhh
Confidence 679999999999999999999999999999999999999999999663 889999999876533221 59999999999
Q ss_pred hHHHHhhcCCC-CCCCCChHHHHHHHhhcCCHHHHHHHHHHHHhcCccCcEEEEEEeCCCCcEEEEeeCCCCCCCCCCCc
Q 028732 123 HDFFWESMQPG-GGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWNDI 201 (204)
Q Consensus 123 H~~fw~~L~P~-~~~~P~~~L~~~I~~~FGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~~g~L~I~~t~N~~~Pl~~g~~ 201 (204)
|+|||++|+|+ ++++|+|+|+++|+++|||||+||++|+++|.++|||||+|||+|+ .++|.|++|+|||+|++++.+
T Consensus 80 H~~fw~~l~p~~gg~~p~g~L~~aI~~~FGS~d~fk~~f~~aa~~~fGsGWawLv~~~-~~kL~i~~t~n~~~p~~~~~~ 158 (204)
T COG0605 80 HSLFWENLSPGGGGGKPTGELAAAINKDFGSFDKFKEEFTAAAASVFGSGWAWLVYDP-DGKLEIVSTYNQDTPLMWGSV 158 (204)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCceEEEEECC-CCcEEEEeccCCCCcccCCCC
Confidence 99999999996 8889999999999999999999999999999999999999999998 679999999999999999999
Q ss_pred cC
Q 028732 202 VR 203 (204)
Q Consensus 202 Pl 203 (204)
||
T Consensus 159 Pi 160 (204)
T COG0605 159 PL 160 (204)
T ss_pred ce
Confidence 97
No 2
>PLN02622 iron superoxide dismutase
Probab=100.00 E-value=1.6e-57 Score=395.28 Aligned_cols=198 Identities=77% Similarity=1.292 Sum_probs=173.1
Q ss_pred cCCCCCCcccccCCCC-----CCcccccccccc--cccccccccccccccCCCCCCCCCcCCCCCHHHHHHHHHHHHHHH
Q 028732 6 CNPLAPPSTHLLLNPS-----KIPKFCHSRRQL--HGSQRASKIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGY 78 (204)
Q Consensus 6 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~Y 78 (204)
||...|-++++.-.+. ++|+..+.|... ...++.....+.|+||+|||+|++|||+||++||++||+|||++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lpY~~~aLeP~iS~~tl~~H~~kHh~~Y 80 (261)
T PLN02622 1 CNSSVPTSSCFVTDSDLSIRLKSPKLLNLRNKQRRRSLQRASKVVAYYGLKTPPYPLDALEPYMSRRTLEVHWGEHHRGY 80 (261)
T ss_pred CCCCCCccceeeecchHHHhhcCHHHhhhccccccccccccccccccccCCCCCCCccccccccCHHHHHHHHHHHHHHH
Confidence 8888887777764443 677777766433 333444455678999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhhcCCHHHHHHHHhcCCCCCcceechhhhhhhHHHHhhcCCCCCCCCChHHHHHHHhhcCCHHHHHH
Q 028732 79 VEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKE 158 (204)
Q Consensus 79 V~~LN~~l~~~~~~~~~~l~~ii~~~~~~~~~~~ifnnag~~~NH~~fw~~L~P~~~~~P~~~L~~~I~~~FGS~d~fk~ 158 (204)
|++||++++++++++..++++|+..+........+||+|||||||+|||++|+|.+++.|++.|+++|+++|||+|+||+
T Consensus 81 V~~LN~~l~~~~~~~~~~l~~li~~~~~~~~~~~vfnna~g~~NH~~Fw~~L~P~g~~~P~g~L~~aI~~~FGS~d~Fk~ 160 (261)
T PLN02622 81 VEGLNKQLAKDDILYGYTMDELVKVTYNNGNPLPEFNNAAQVWNHDFFWESMQPGGGDMPELGVLEQIEKDFGSFTNFRE 160 (261)
T ss_pred HHHHHHHHhCchhhhcCCHHHHHHHhhccchhHHHHHHHHhHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhcCHHHHHH
Confidence 99999999998767788999998765555545679999999999999999999987778999999999999999999999
Q ss_pred HHHHHHhcCccCcEEEEEEeCCCCcEEEEeeCCCCCCCCCCCccC
Q 028732 159 KFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWNDIVR 203 (204)
Q Consensus 159 ~F~~~A~~~fGSGWvWLv~d~~~g~L~I~~t~N~~~Pl~~g~~Pl 203 (204)
+|+++|.++|||||+|||+|+.+|+|.|++|+|||+|++++.+||
T Consensus 161 ~F~~aA~s~fGSGW~WLv~d~~~g~L~I~~t~N~~~Pl~~~~~PL 205 (261)
T PLN02622 161 KFTEAALTLFGSGWVWLVLKREERRLEVVKTSNAINPLVWDDIPI 205 (261)
T ss_pred HHHHHHhhcCCceEEEEEEeCCCCeEEEEecCCCCCCccCCCEeE
Confidence 999999999999999999998779999999999999999998897
No 3
>PLN02184 superoxide dismutase [Fe]
Probab=100.00 E-value=4.4e-57 Score=382.67 Aligned_cols=162 Identities=51% Similarity=0.929 Sum_probs=149.8
Q ss_pred ccccccccccCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHhcCCCCCcceechh
Q 028732 39 ASKIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAV 118 (204)
Q Consensus 39 ~~~~~~~~~lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~~~~~~~~~l~~ii~~~~~~~~~~~ifnnag 118 (204)
.+++.+.|+||+|||+|++|||+||++||++||+|||++||++||+++++++ ++++++++|+..++.......+|||||
T Consensus 4 ~~~~~~~~~lp~Lpy~~~aLeP~iS~~t~~~Hh~kHh~~YV~~LN~~l~~~~-~~~~~l~~ii~~~~~~~~~~~ifnnag 82 (212)
T PLN02184 4 SSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTE-LEGKPLEHIIHSTYNNGDLLPAFNNAA 82 (212)
T ss_pred hhhhccceeCCCCCCCcccCccccCHHHHHHHHHHHHHHHHHHHHHHhcCch-hhcCCHHHHHHHhcccchHHHHHHhHH
Confidence 3445678999999999999999999999999999999999999999999987 888999999876655444456899999
Q ss_pred hhhhhHHHHhhcCCCCCCCCChHHHHHHHhhcCCHHHHHHHHHHHHhcCccCcEEEEEEeCCCCcEEEEeeCCCCCCCCC
Q 028732 119 QVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVW 198 (204)
Q Consensus 119 ~~~NH~~fw~~L~P~~~~~P~~~L~~~I~~~FGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~~g~L~I~~t~N~~~Pl~~ 198 (204)
|+|||+|||+||+|++++.|+++|+++|+++|||+|+||++|.++|.++|||||+|||+|+ ++|.|++|+||++|++.
T Consensus 83 g~~NH~~fw~~L~p~g~~~P~g~L~~~I~~~FGS~d~fk~~F~~~a~~~fGsGW~WLv~~~--~~L~i~~t~n~~~P~~~ 160 (212)
T PLN02184 83 QAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSN--EKLKVVKTPNAVNPLVL 160 (212)
T ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCeEEEEEEEC--CEEEEEeecCCCCCccC
Confidence 9999999999999988788999999999999999999999999999999999999999995 79999999999999999
Q ss_pred CCccC
Q 028732 199 NDIVR 203 (204)
Q Consensus 199 g~~Pl 203 (204)
+.+||
T Consensus 161 ~~~Pl 165 (212)
T PLN02184 161 GSFPL 165 (212)
T ss_pred CCeeE
Confidence 99997
No 4
>PRK10543 superoxide dismutase; Provisional
Probab=100.00 E-value=2.1e-56 Score=373.79 Aligned_cols=153 Identities=43% Similarity=0.734 Sum_probs=143.4
Q ss_pred cccccCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHhcCCCCCcceechhhhhhh
Q 028732 44 AYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQVWNH 123 (204)
Q Consensus 44 ~~~~lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~~~~~~~~~l~~ii~~~~~~~~~~~ifnnag~~~NH 123 (204)
+.|+||+|||+|++|||+||++||++||+|||++||++||+++++++ +++.++++|+... ...+||||||++||
T Consensus 1 m~~~lp~Lpy~~~~Lep~is~~~~~~H~~kHh~~YV~~LN~~~~~~~-~~~~~l~~ii~~~-----~~~ifnna~g~~NH 74 (193)
T PRK10543 1 MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTA-FEGKSLEEIVRSS-----EGGVFNNAAQVWNH 74 (193)
T ss_pred CCCcCCCCCCCccccchhcCHHHHHHHHHHHHHHHHHHHHHHHhcch-hhcCCHHHHHHhh-----HHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999887 8889999998542 23599999999999
Q ss_pred HHHHhhcCCCCCCCCChHHHHHHHhhcCCHHHHHHHHHHHHhcCccCcEEEEEEeCCCCcEEEEeeCCCCCCCCCCCccC
Q 028732 124 DFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWNDIVR 203 (204)
Q Consensus 124 ~~fw~~L~P~~~~~P~~~L~~~I~~~FGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~~g~L~I~~t~N~~~Pl~~g~~Pl 203 (204)
+|||++|+|.+++.|+++|+++|+++|||+|+||++|+++|.++|||||||||+|+ +|+|.|++|+|||+|++.+.+||
T Consensus 75 ~lfw~~L~p~~~~~p~~~L~~~I~~~FGS~e~fk~~f~~~a~~~fGsGW~WLv~~~-~~~L~I~~t~n~~~p~~~~~~Pl 153 (193)
T PRK10543 75 TFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNA-DGKLAIVSTSNAGTPLTTDATPL 153 (193)
T ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEECC-CCCEEEEeccCCCCCcCCCCEeE
Confidence 99999999987778999999999999999999999999999999999999999997 79999999999999999998997
No 5
>PLN02685 iron superoxide dismutase
Probab=100.00 E-value=2.9e-55 Score=386.43 Aligned_cols=161 Identities=55% Similarity=1.022 Sum_probs=149.0
Q ss_pred cccccccCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHhcCCCCCcceechhhhh
Q 028732 42 IIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQVW 121 (204)
Q Consensus 42 ~~~~~~lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~~~~~~~~~l~~ii~~~~~~~~~~~ifnnag~~~ 121 (204)
..+.|+||+|||+|++|||+||++||++||+|||++||++||+++++++ ++++++++|+..+........+||||||||
T Consensus 43 ~~~~~~Lp~LpY~y~aLEP~IS~etmelHh~kHhq~YV~~LN~al~~t~-l~~~sl~eii~~~~~~~~~~~ifNnaggh~ 121 (299)
T PLN02685 43 ITAKFELKPPPYPLDALEPHMSRETLEYHWGKHHRAYVDNLNKQIVGTE-LDGMSLEDVVLITYNKGDMLPAFNNAAQAW 121 (299)
T ss_pred cccceecCCCCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHcCch-hhcCCHHHHHHHhhccchhHHHHHHHHHHH
Confidence 4467999999999999999999999999999999999999999999886 888999999876655554556999999999
Q ss_pred hhHHHHhhcCCCCCCCCChHHHHHHHhhcCCHHHHHHHHHHHHhcCccCcEEEEEEeC---------------CCCcEEE
Q 028732 122 NHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKR---------------EERRLAV 186 (204)
Q Consensus 122 NH~~fw~~L~P~~~~~P~~~L~~~I~~~FGS~d~fk~~F~~~A~~~fGSGWvWLv~d~---------------~~g~L~I 186 (204)
||+|||+||+|++++.|++.|+++|+++|||||+||++|+++|.++|||||+|||+++ .+++|.|
T Consensus 122 NH~fFWe~L~P~ggg~P~g~L~~aI~~~FGS~d~FK~~F~~aA~s~fGSGWvWLV~~~~~~~~~~~~np~~~~~~~~L~i 201 (299)
T PLN02685 122 NHEFFWESMKPGGGGKPSGELLQLIERDFGSFERFVEEFKSAAATQFGSGWAWLAYKANRLDVGNAVNPCPSEEDKKLVV 201 (299)
T ss_pred HHHHHHHhcCCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEEccccccccccccccccccCCceeE
Confidence 9999999999988889999999999999999999999999999999999999999975 3589999
Q ss_pred EeeCCCCCCCCCCCccC
Q 028732 187 VKTSNAINPLVWNDIVR 203 (204)
Q Consensus 187 ~~t~N~~~Pl~~g~~Pl 203 (204)
++|.||++|++.|.+||
T Consensus 202 ~~t~n~d~pl~~~~~PL 218 (299)
T PLN02685 202 VKSPNAVNPLVWDYSPL 218 (299)
T ss_pred EeccCCCCCccCCCEeE
Confidence 99999999999998997
No 6
>PRK10925 superoxide dismutase; Provisional
Probab=100.00 E-value=6.3e-55 Score=368.11 Aligned_cols=156 Identities=37% Similarity=0.550 Sum_probs=140.2
Q ss_pred cccccCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHhcCCC--CCcceechhhhh
Q 028732 44 AYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGN--PLPVFNNAVQVW 121 (204)
Q Consensus 44 ~~~~lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~~~~~~~~~l~~ii~~~~~~~~--~~~ifnnag~~~ 121 (204)
+.|+||+|||+|++|||+||++||++||+|||++||++||++++++++++++++++|+......+. +..+||||||+|
T Consensus 1 m~~~lp~Lpy~~~aLep~is~~t~~~H~~kHh~~YV~~LN~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~i~nna~g~~ 80 (206)
T PRK10925 1 MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHA 80 (206)
T ss_pred CCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccHHhhcCCHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999999999999876888999999865533322 245899999999
Q ss_pred hhHHHHhhcCCCCCCCCChHHHHHHHhhcCCHHHHHHHHHHHHhcCccCcEEEEEEeCCCCcEEEEeeCCCCCCCCC---
Q 028732 122 NHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVW--- 198 (204)
Q Consensus 122 NH~~fw~~L~P~~~~~P~~~L~~~I~~~FGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~~g~L~I~~t~N~~~Pl~~--- 198 (204)
||+|||+||+|+ +.|+++|+++|+++|||||+||++|+++|.++|||||+|||+| +++|.|++|+|||+|++.
T Consensus 81 NH~~fw~~L~P~--~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGSGW~wLv~~--~~~L~i~~t~N~~~p~~~~~~ 156 (206)
T PRK10925 81 NHSLFWKGLKKG--TTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLK--GDKLAVVSTANQDSPLMGEAI 156 (206)
T ss_pred HHHHHHhccCCC--CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeeEEEEEe--CCEEEEEeccCCCCCcccccc
Confidence 999999999994 4799999999999999999999999999999999999999998 479999999999999984
Q ss_pred ---CCccC
Q 028732 199 ---NDIVR 203 (204)
Q Consensus 199 ---g~~Pl 203 (204)
+.+||
T Consensus 157 ~~~~~~Pl 164 (206)
T PRK10925 157 SGASGFPI 164 (206)
T ss_pred ccCCCcee
Confidence 34676
No 7
>PTZ00078 Superoxide dismutase [Fe]; Provisional
Probab=100.00 E-value=1.5e-52 Score=350.57 Aligned_cols=148 Identities=43% Similarity=0.728 Sum_probs=137.7
Q ss_pred CCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHhcCCCCCcceechhhhhhhHHHHh
Q 028732 49 KTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQVWNHDFFWE 128 (204)
Q Consensus 49 p~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~~~~~~~~~l~~ii~~~~~~~~~~~ifnnag~~~NH~~fw~ 128 (204)
|+|||+|++|||+||++||++||+|||++||++||+++++++ +++.++++|+.... ..+||||||++||+|||+
T Consensus 1 p~Lpy~~~~Lep~iS~~~l~~H~~~hh~~YV~~lN~~~~~~~-~~~~~~~~ii~~~~-----~~~~n~a~g~~NH~lfw~ 74 (193)
T PTZ00078 1 PKLPYGLKELSPHLSEETLKFHYSKHHAGYVNKLNGLIKGTP-LENKTLEELIKEYS-----GAVFNNAAQIWNHNFYWL 74 (193)
T ss_pred CCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhcCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999987 78899999886531 369999999999999999
Q ss_pred hcCCCCCCCCChHHHHHHHhhcCCHHHHHHHHHHHHhcCccCcEEEEEEeCCCCcEEEEeeCCCCCCCCCC-CccC
Q 028732 129 SMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWN-DIVR 203 (204)
Q Consensus 129 ~L~P~~~~~P~~~L~~~I~~~FGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~~g~L~I~~t~N~~~Pl~~g-~~Pl 203 (204)
+|+|++++.|+++|+++|+++|||+|+||++|.++|.++|||||||||++. +|+|.|++|+||++|++.+ .+||
T Consensus 75 ~L~p~g~~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvwLv~~~-~~~L~i~~t~n~~~p~~~~~~~Pl 149 (193)
T PTZ00078 75 SMGPNGGGEPTGEIKEKIDEKFGSFDNFKNEFSNVLSGHFGSGWGWLVLKN-DGKLEIVQTHDAGNPIKDNTGKPL 149 (193)
T ss_pred hcCCCCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEECC-CCcEEEEeccCCCCCccCCCCceE
Confidence 999987788999999999999999999999999999999999999999864 7999999999999999864 6887
No 8
>PLN02471 superoxide dismutase [Mn]
Probab=100.00 E-value=2.5e-51 Score=351.24 Aligned_cols=154 Identities=29% Similarity=0.435 Sum_probs=135.0
Q ss_pred cccccCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCChh-hhcCCHHHHHHHHhcCCCCCcceechhhhhh
Q 028732 44 AYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDV-LYGYTLDELVKVSYNSGNPLPVFNNAVQVWN 122 (204)
Q Consensus 44 ~~~~lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~~~~-~~~~~l~~ii~~~~~~~~~~~ifnnag~~~N 122 (204)
+.|+||+|||+|++|||+||++||++||+|||++||++||++++++++ .+..++.+++.. ...++||+|||+|
T Consensus 29 ~~~~lp~Lpy~~~aLep~iS~~tl~~Hh~kHh~~YV~~LN~l~~~l~~~~~~~~~~~i~~~------~~~~~~n~gg~~N 102 (231)
T PLN02471 29 QTFTLPDLPYDYGALEPAISGEIMQLHHQKHHQTYVTNYNKALEQLDQAVEKGDASAVVKL------QSAIKFNGGGHVN 102 (231)
T ss_pred ccccCCCCCCCcccchhhcCHHHHHHHHhhhHHHHHHHHHHHHHHhHhhcccCCHHHHHhh------hhhhhhHHHHHHh
Confidence 579999999999999999999999999999999999999999987642 234566666532 1258899999999
Q ss_pred hHHHHhhcCCC--CCCC-CChHHHHHHHhhcCCHHHHHHHHHHHHhcCccCcEEEEEEeCCCCcEEEEeeCCCCCCCCCC
Q 028732 123 HDFFWESMQPG--GGDI-PKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWN 199 (204)
Q Consensus 123 H~~fw~~L~P~--~~~~-P~~~L~~~I~~~FGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~~g~L~I~~t~N~~~Pl~~g 199 (204)
|+|||++|+|. +++. |+++|+++|+++|||+|+||++|.++|.++|||||+|||+|+.+|+|.|++|+|||+|+..+
T Consensus 103 H~~fw~~L~P~~~gg~~~p~g~L~~~I~~~FGS~d~fk~~f~~~A~~~fGSGW~WLv~d~~~~~L~i~~t~n~d~~~~~~ 182 (231)
T PLN02471 103 HSIFWKNLAPVSEGGGEPPHGSLGWAIDEHFGSLEALVKKMSAEGAAVQGSGWVWLGLDKELKKLVVETTANQDPLVTKG 182 (231)
T ss_pred HHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCeEEEEEEeCCCCeEEEEeecCCCCCcccC
Confidence 99999999995 3444 68999999999999999999999999999999999999999877999999999999887654
Q ss_pred --CccC
Q 028732 200 --DIVR 203 (204)
Q Consensus 200 --~~Pl 203 (204)
.+||
T Consensus 183 ~~~~Pi 188 (231)
T PLN02471 183 PSLVPL 188 (231)
T ss_pred CCCceE
Confidence 4786
No 9
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-51 Score=348.44 Aligned_cols=176 Identities=36% Similarity=0.633 Sum_probs=154.9
Q ss_pred ccccccccccccccccccccccCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHhc
Q 028732 27 CHSRRQLHGSQRASKIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYN 106 (204)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~~~~~~~~~l~~ii~~~~~ 106 (204)
.-.+|+..........+..+.||+|||+|++|||+||+++|++||+|||++||++||++++++.++.++...+++. ++.
T Consensus 9 ~~~~~~~~~~~~~~~v~~~~~lp~lp~~~~alep~~s~e~~~lh~~kHh~~yV~~ln~~~~~~~~~~~~~~~~~~~-t~~ 87 (234)
T KOG0876|consen 9 HLKKRRSLKLLFSLAVRQKATLPDLPYDYDALEPIISAEIMELHWDKHHRTYVNNLNKAVEGLSELYSKLFVELSL-TAI 87 (234)
T ss_pred HHHhhcccceeeheeeeeeecCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhhH-hcc
Confidence 3344444443333455678999999999999999999999999999999999999999999988666666666655 556
Q ss_pred CCCCCcceechhhhhhhHHHHhhcCCCCCCCCChH-HHHHHHhhcCCHHHHHHHHHHHHhcCccCcEEEEEEeCCCCcEE
Q 028732 107 SGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYG-VLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLA 185 (204)
Q Consensus 107 ~~~~~~ifnnag~~~NH~~fw~~L~P~~~~~P~~~-L~~~I~~~FGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~~g~L~ 185 (204)
..++...||+||+++||+|||++|.|+++++|.++ |.++|+++|||+|+|+++|.+++.++|||||+|||++++.++|.
T Consensus 88 ~~~~a~~Fn~~~~~~Nh~fFw~~l~p~gg~~p~~~~L~~aI~~~FGS~ee~~k~~~~~~~~v~GsGW~WLv~~~~~~kL~ 167 (234)
T KOG0876|consen 88 APQPAPKFNGAGHIYNHSFFWENLAPPGGGKPEGEALLKAIDSSFGSLEEFVKELNAAAAAVFGSGWLWLVYNKELKKLF 167 (234)
T ss_pred ChhhhhhcCCccccccchhhhhhccCCCCCCCchHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCceEEEEEcCCCCeEE
Confidence 67778899999999999999999999988899877 99999999999999999999999999999999999999668999
Q ss_pred EEeeCCCCCCCCCC---CccC
Q 028732 186 VVKTSNAINPLVWN---DIVR 203 (204)
Q Consensus 186 I~~t~N~~~Pl~~g---~~Pl 203 (204)
|++|+||++|+.++ .+||
T Consensus 168 i~~T~Na~~P~~~~t~~~vPL 188 (234)
T KOG0876|consen 168 ILTTYNAGDPLVWTTGQLVPL 188 (234)
T ss_pred EEecCCCCCCeeccCCCccce
Confidence 99999999999986 7887
No 10
>PF00081 Sod_Fe_N: Iron/manganese superoxide dismutases, alpha-hairpin domain Note: SCOP classifies the two domains separately.; InterPro: IPR019831 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the N-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 3TQJ_A 1MY6_A 1BT8_A 1BSM_B 1AR5_A 1BS3_A 1AR4_A 1AVM_A 3DC6_C 1ZSP_B ....
Probab=99.98 E-value=1.7e-33 Score=206.07 Aligned_cols=82 Identities=43% Similarity=0.760 Sum_probs=69.1
Q ss_pred ccccCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHhcCCCCCcceechhhhhhhH
Q 028732 45 YYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQVWNHD 124 (204)
Q Consensus 45 ~~~lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~~~~~~~~~l~~ii~~~~~~~~~~~ifnnag~~~NH~ 124 (204)
.|+||+|||+|++|||+||++||++||+|||++||++||+++++++ ++++++++++... .+..+||||||+|||+
T Consensus 1 ~f~Lp~LpY~y~aLeP~is~~t~~~H~~kHh~~YV~~lN~~~~~~~-~~~~~~~~~~~~~----~~~~~~nn~gg~~NH~ 75 (82)
T PF00081_consen 1 KFELPPLPYAYDALEPYISEETMELHHDKHHQGYVNNLNKALEKTE-LEGKSLEEIISNA----LRAALRNNAGGHYNHS 75 (82)
T ss_dssp SS-----SSSTTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHTTCH-HHTSTHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc-cccccchhhhhhh----hhHHHHHHcchhhhHH
Confidence 4899999999999999999999999999999999999999999996 8899999998642 2457999999999999
Q ss_pred HHHhhcC
Q 028732 125 FFWESMQ 131 (204)
Q Consensus 125 ~fw~~L~ 131 (204)
|||+||+
T Consensus 76 ~fw~~ls 82 (82)
T PF00081_consen 76 FFWENLS 82 (82)
T ss_dssp HHHHTB-
T ss_pred HHHHHcC
Confidence 9999995
No 11
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately.; InterPro: IPR019832 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the C-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 1KKC_Y 2GOJ_B 1UES_C 1UER_C 1QNN_A 1MY6_A 1MA1_F 1P7G_Q 3EVK_D 2GPC_A ....
Probab=99.88 E-value=4.9e-23 Score=156.82 Aligned_cols=68 Identities=43% Similarity=0.812 Sum_probs=64.7
Q ss_pred CCCChHHHHHHHhhcCCHHHHHHHHHHHHhcCccCcEEEEEEeCCCCcEEEEeeCCCCCCCCCCCccC
Q 028732 136 DIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWNDIVR 203 (204)
Q Consensus 136 ~~P~~~L~~~I~~~FGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~~g~L~I~~t~N~~~Pl~~g~~Pl 203 (204)
++|++.|+++|+++|||+|+||++|.++|.++|||||+|||+|+.+++|.|++|.|+++|+..+.+||
T Consensus 1 g~P~g~l~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d~~~~~L~i~~t~n~~~p~~~~~~Pl 68 (106)
T PF02777_consen 1 GKPSGKLKKAIEEDFGSFDNFKAEFTAAALSVFGSGWVWLVYDPSDGKLSIISTPNHDTPIIWGLIPL 68 (106)
T ss_dssp SS-THHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEETTTTEEEEEEEETTTBGGGGTEEEE
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCeeeeeeccccceeeeeeecccccccchhhccc
Confidence 47999999999999999999999999999999999999999998899999999999999999999987
No 12
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=58.83 E-value=11 Score=25.58 Aligned_cols=19 Identities=26% Similarity=0.650 Sum_probs=16.0
Q ss_pred HHHHHHHhhcCCHHHHHHH
Q 028732 141 GVLEQIEKDFGSFTNFKEK 159 (204)
Q Consensus 141 ~L~~~I~~~FGS~d~fk~~ 159 (204)
...+.|++.|||+++|..+
T Consensus 33 ~~l~~i~~~yGs~e~Yl~~ 51 (68)
T PF13348_consen 33 AALDAIDERYGSVENYLRE 51 (68)
T ss_dssp HHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 4668999999999999854
No 13
>PF05416 Peptidase_C37: Southampton virus-type processing peptidase; InterPro: IPR001665 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C37, (clan PA(C)). The type example is calicivirin from Southampton virus, an endopeptidase that cleaves the polyprotein at sites N-terminal to itself, liberating the polyprotein helicase. Southampton virus is a positive-stranded ssRNA virus belonging to the Caliciviruses, which are viruses that cause gastroenteritis. The calicivirus genome contains two open reading frames, ORF1 and ORF2. ORF1 encodes a non-structural polypeptide, which has RNA helicase, cysteine protease and RNA polymerase activity []. The regions of the polyprotein in which these activities lie are similar to proteins produced by the picornaviruses []. ORF2 encodes a structural, capsid protein. Two different families of caliciviruses can be distinguished on the basis of sequence similarity, namely the Norwalk-like viruses or small round structured viruses (SRSVs), and those classed as non-SRSVs.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 2FYQ_A 2FYR_A 1WQS_D 4ASH_A 2IPH_B.
Probab=48.74 E-value=11 Score=35.95 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=17.1
Q ss_pred CccCcEEEEEEeCCCCcEEEEeeCC
Q 028732 167 LFGSGYVWLVLKREERRLAVVKTSN 191 (204)
Q Consensus 167 ~fGSGWvWLv~d~~~g~L~I~~t~N 191 (204)
.|||||.+-| +..|.|.+|+-
T Consensus 377 ~fGsGWGfWV----S~~lfITttHV 397 (535)
T PF05416_consen 377 KFGSGWGFWV----SPTLFITTTHV 397 (535)
T ss_dssp EETTEEEEES----SSSEEEEEGGG
T ss_pred ecCCceeeee----cceEEEEeeee
Confidence 4999999987 46799988864
No 14
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=46.66 E-value=16 Score=31.46 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 028732 69 VHWGELHRGYVEGLNKHLAKD 89 (204)
Q Consensus 69 ~H~~kHh~~YV~~LN~~l~~~ 89 (204)
-||.|||++.++..|..+++.
T Consensus 228 ~H~rkh~reW~~~A~~~~~qs 248 (251)
T COG4700 228 PHYRKHHREWIKTANERLKQS 248 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHhh
Confidence 499999999999999887654
No 15
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=46.52 E-value=49 Score=24.25 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhcCcc--CcEEEEEEeCCCCcEEEEeeCCC
Q 028732 153 FTNFKEKFIGAALTLFG--SGYVWLVLKREERRLAVVKTSNA 192 (204)
Q Consensus 153 ~d~fk~~F~~~A~~~fG--SGWvWLv~d~~~g~L~I~~t~N~ 192 (204)
+|++.+...+.+...+| .||+||+ |+ ++.+..+...+.
T Consensus 4 ~~ell~~~~~~~~~~~~~~~~~i~l~-d~-~~~~~~~~~~~~ 43 (148)
T PF13185_consen 4 LEELLQQILDALLELTGADAGAIYLY-DP-DGQLLPVAASGD 43 (148)
T ss_dssp HHHHHHHHHHHHHHHHS-SEEEEEEE-ET-TSEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEE-EC-CCcEEEEEEeCC
Confidence 44555555555555555 4666676 87 445444444443
No 16
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=32.71 E-value=1.5e+02 Score=19.72 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=29.2
Q ss_pred hcCCHHHHHHHHHHHHhcCccCcEEEEEEeCCCCcEEE
Q 028732 149 DFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAV 186 (204)
Q Consensus 149 ~FGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~~g~L~I 186 (204)
.|||.+...+++.+.|...-++.|.....+..++++..
T Consensus 13 ~~~s~~d~~~~la~kAd~~GA~~y~I~~~~~~~~~~~~ 50 (56)
T PF07338_consen 13 NFGSPDDAEEALAKKADEKGAKYYRITSASEDGNNWHA 50 (56)
T ss_dssp ECSSHHHHHHHHHHHHHHTT-SEEEEEEEEECSSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEEEEEcCCCeEEE
Confidence 46899999999999999887788888777643455554
No 17
>TIGR02118 conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.
Probab=32.14 E-value=40 Score=24.57 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 028732 60 PYMSKRTLEVHWGELHRGYVEGL 82 (204)
Q Consensus 60 P~IS~~tl~~H~~kHh~~YV~~L 82 (204)
| +|.++++.||..+|...+.++
T Consensus 10 p-~~~e~F~~yy~~~H~pL~~~~ 31 (100)
T TIGR02118 10 P-EDGAAFDHHYRDTHVPLAQKL 31 (100)
T ss_pred C-CCHHHHHHHHHhccHHHHHhC
Confidence 5 889999999999999888775
No 18
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=31.68 E-value=30 Score=23.52 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=20.9
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhcCccCc
Q 028732 140 YGVLEQIEKDFGSFTNFKEKFIGAALTLFGSG 171 (204)
Q Consensus 140 ~~L~~~I~~~FGS~d~fk~~F~~~A~~~fGSG 171 (204)
..-++.|-+.|||+|++++.=.+.-..+-|-|
T Consensus 13 ~~~ak~L~~~f~sl~~l~~a~~e~L~~i~gIG 44 (64)
T PF12826_consen 13 EKTAKLLAKHFGSLEALMNASVEELSAIPGIG 44 (64)
T ss_dssp HHHHHHHHHCCSCHHHHCC--HHHHCTSTT--
T ss_pred HHHHHHHHHHcCCHHHHHHcCHHHHhccCCcC
Confidence 45778899999999999876555444555544
No 19
>PF08025 Antimicrobial_3: Spider antimicrobial peptide; InterPro: IPR012522 This family includes antimicrobial peptides isolated from the crude venom of the wolf spider Oxyopes kitabensis (Wolf spider). These peptides, known as oxyopinins, are the largest linear cationic amphipathic peptides chemically characterised and exhibit disrupting activities towards biological membranes [].; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region
Probab=31.00 E-value=65 Score=19.72 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.7
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHh
Q 028732 140 YGVLEQIEKDFGSFTNFKEKFIGAAL 165 (204)
Q Consensus 140 ~~L~~~I~~~FGS~d~fk~~F~~~A~ 165 (204)
+++++.|.+-|-.+..-+++|.+++.
T Consensus 7 ~kilrsiak~fkgvgk~rkqfk~asd 32 (37)
T PF08025_consen 7 SKILRSIAKFFKGVGKVRKQFKEASD 32 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 46889999999999999999998763
No 20
>PF01666 DX: DX module; InterPro: IPR002593 This domain has no known function. It is found in several Caenorhabditis elegans proteins. The domain contains 6 conserved cysteines that probably form three disulphide bridges.
Probab=30.58 E-value=50 Score=23.69 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=21.1
Q ss_pred CcEEEEEEeCCCCcEEEEeeCCCC
Q 028732 170 SGYVWLVLKREERRLAVVKTSNAI 193 (204)
Q Consensus 170 SGWvWLv~d~~~g~L~I~~t~N~~ 193 (204)
++|.|-..|+.+|+|.|+...+..
T Consensus 16 ~~~~~~fCdp~t~ki~imG~~~~~ 39 (76)
T PF01666_consen 16 PNFSFAFCDPETGKIVIMGEENFN 39 (76)
T ss_pred CCcceEEECCcCCeEEEEeeeccC
Confidence 689999999999999999987763
No 21
>PF07110 EthD: EthD domain; InterPro: IPR009799 This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber (Q93EX2 from SWISSPROT). R. ruber (formerly Gordonia terrae) IFP 2001 is one of a few bacterial strains able to degrade ethyl tert-butyl ether (ETBE), which is a major pollutant from gasoline. This strain was found to undergo a spontaneous 14.3-kbp chromosomal deletion, which results in the loss of the ability to degrade ETBE. Sequence analysis of the region corresponding to the deletion revealed the presence of a gene cluster, ethABCD, encoding a ferredoxin reductase (EthA), a cytochrome P-450 (EthB), a ferredoxin (EthC), and a 10kDa protein of unknown function (EthD), respectively. Upstream of ethABCD lies ethR, which codes for a putative positive transcriptional regulator of the AraC/XylS family. Transformation of the ETBE-negative mutant by a plasmid carrying the ethRABCD genes restored the ability to degrade ETBE. Complementation was abolished if the plasmid carried ethRABC only demonstrating that EthD is essential for the ETBE degradation system [].; PDB: 3BF4_B 2FTR_A.
Probab=28.35 E-value=53 Score=22.86 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 028732 60 PYMSKRTLEVHWGELHRGYVEG 81 (204)
Q Consensus 60 P~IS~~tl~~H~~kHh~~YV~~ 81 (204)
|.+|.+.+.-||...|...|..
T Consensus 1 Pgls~eeF~~~~~~~H~pl~~~ 22 (95)
T PF07110_consen 1 PGLSPEEFHDYWREVHAPLVKR 22 (95)
T ss_dssp --S-HHHHHHHHHHTHHHHHCC
T ss_pred CCCCHHHHHHHHHHhHHHHHHH
Confidence 6899999999999989877653
No 22
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=27.49 E-value=80 Score=23.86 Aligned_cols=73 Identities=16% Similarity=0.337 Sum_probs=36.2
Q ss_pred hhhhhhHHHHhhcCCCC---CCCCChH-HHHHHHhhcCCHHHHHHHHHHHHhcCccCcEEEEEEeCCCCcEEEEeeCCCC
Q 028732 118 VQVWNHDFFWESMQPGG---GDIPKYG-VLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAI 193 (204)
Q Consensus 118 g~~~NH~~fw~~L~P~~---~~~P~~~-L~~~I~~~FGS~d~fk~~F~~~A~~~fGSGWvWLv~d~~~g~L~I~~t~N~~ 193 (204)
|..+|+.=..+.|.-.+ ......+ +..++++ +.+...+....+.| .|+..++|+..++|.+..-.-.-
T Consensus 30 G~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~-------~~~~~~~~~~~l~G-~fa~v~~d~~~~~l~~~rD~~G~ 101 (125)
T PF13537_consen 30 GEIYNREELRRELEERGHQFSSDSDSELILHLYEE-------YREWGEDFLKRLDG-PFAFVIWDKDKKRLFLARDRFGI 101 (125)
T ss_dssp EEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH----------HGGGGGGT--E-EEEEEEEETTE--EEEEE-TT--
T ss_pred EEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHH-------HHHHHHHHHHhCCc-eEEEEEEeCCCcEEEEEECCCCC
Confidence 56889977777775322 1223334 3455554 44455555555666 79999999876677776655555
Q ss_pred CCCCC
Q 028732 194 NPLVW 198 (204)
Q Consensus 194 ~Pl~~ 198 (204)
.|+..
T Consensus 102 rpLyy 106 (125)
T PF13537_consen 102 RPLYY 106 (125)
T ss_dssp S--EE
T ss_pred CCeEE
Confidence 56653
No 23
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=26.92 E-value=40 Score=28.78 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=18.0
Q ss_pred HHhhcCCHHHHHHHHHHHHh
Q 028732 146 IEKDFGSFTNFKEKFIGAAL 165 (204)
Q Consensus 146 I~~~FGS~d~fk~~F~~~A~ 165 (204)
+-++|+++|+|+++|...|.
T Consensus 93 ~~~Sfe~L~~Wr~EFl~qa~ 112 (210)
T KOG0394|consen 93 NPKSFENLENWRKEFLIQAS 112 (210)
T ss_pred ChhhhccHHHHHHHHHHhcC
Confidence 45789999999999999996
No 24
>cd01935 Ntn_CGH_like Choloylglycine hydrolase (CGH)_like. This family of choloylglycine hydrolase-like proteins includes conjugated bile acid hydrolase (CBAH), penicillin V acylase (PVA), acid ceramidase (AC), and N-acylethanolamine-hydrolyzing acid amidase (NAAA) which cleave non-peptide carbon-nitrogen bonds in bile salt constituents. These enzymes have an N-terminal nucleophilic cysteine, as do other members of the Ntn hydrolase family to which they belong. This nucleophilic cysteine is exposed by post-translational prossessing of the precursor protein.
Probab=25.58 E-value=3e+02 Score=22.56 Aligned_cols=52 Identities=12% Similarity=0.231 Sum_probs=38.7
Q ss_pred CCCCChHHHHHHHhhcCCHHHHHHHHHHHHhc-------CccCcEEEEEEeCCCCcEEEE
Q 028732 135 GDIPKYGVLEQIEKDFGSFTNFKEKFIGAALT-------LFGSGYVWLVLKREERRLAVV 187 (204)
Q Consensus 135 ~~~P~~~L~~~I~~~FGS~d~fk~~F~~~A~~-------~fGSGWvWLv~d~~~g~L~I~ 187 (204)
.+.|...+...|-+.|.++|+-++.+.+.... -..+..-|++.|+ +|+-.|+
T Consensus 95 ~~~~~~~~~r~vL~~~~tv~ea~~~l~~~~~~~~~~~~~~~~~~~h~~i~D~-~G~~~vi 153 (229)
T cd01935 95 DGLPAFELIRWVLENCDSVEEVKEALKKIPIVDFPIPLGGPAAPLHYILSDK-SGDSAVI 153 (229)
T ss_pred CccCHHHHHHHHHHHcCCHHHHHHHHHhCcccccccCCCCCCcCEEEEEEcC-CCCEEEE
Confidence 34566778888989999999999999887651 1146888999998 4664444
No 25
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=25.33 E-value=1.5e+02 Score=28.54 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=33.9
Q ss_pred hHHHHhhcCCCCCCCCChHHHHHHHhhcCCHHHHHHHHHHHHhcCcc--CcEEEE
Q 028732 123 HDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFG--SGYVWL 175 (204)
Q Consensus 123 H~~fw~~L~P~~~~~P~~~L~~~I~~~FGS~d~fk~~F~~~A~~~fG--SGWvWL 175 (204)
-+=|+.+|+- +-..+|.+.|.+.|||.+ +.+.+-..+..++| .+|-|=
T Consensus 239 aSrf~nslsq----eqr~ELM~l~qqAfgsp~-l~~~l~~l~~~lQG~rp~~dwD 288 (652)
T COG4867 239 ASRFRNSLSQ----EQRDELMALAQQAFGSPA-LMRALDRLDAHLQGARPGEDWD 288 (652)
T ss_pred HHHHhhhhhH----HHHHHHHHHHHHHhCCHH-HHHHHhhhhhhhhccCCCCCCC
Confidence 4456666652 346789999999999976 45556666666777 688883
No 26
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=25.22 E-value=52 Score=22.25 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhcCcc-CcEEEE
Q 028732 153 FTNFKEKFIGAALTLFG-SGYVWL 175 (204)
Q Consensus 153 ~d~fk~~F~~~A~~~fG-SGWvWL 175 (204)
.+.+++.+.++-.+..+ .||++|
T Consensus 3 ~~~~~~~l~~ll~~~~~~~g~v~l 26 (74)
T PF12872_consen 3 LEELKKLLRELLESQKGEDGWVSL 26 (74)
T ss_dssp -HHHHHHHHHHHHHTCTTTSSEEH
T ss_pred HHHHHHHHHHHHHhCcCCCceEEH
Confidence 44555555555544444 466664
No 27
>PF09418 DUF2009: Protein of unknown function (DUF2009); InterPro: IPR018553 This is a eukaryotic family of proteins with unknown function.
Probab=20.58 E-value=1.3e+02 Score=28.71 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=23.4
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhc--CccCc
Q 028732 140 YGVLEQIEKDFGSFTNFKEKFIGAALT--LFGSG 171 (204)
Q Consensus 140 ~~L~~~I~~~FGS~d~fk~~F~~~A~~--~fGSG 171 (204)
..|.+.|+..|||+++++.....-.=. -=|||
T Consensus 381 ~~l~~yi~~~~g~~~~l~~~IL~DfFrh~FDGSG 414 (458)
T PF09418_consen 381 PHLRNYIESEFGSVEELKKTILQDFFRHAFDGSG 414 (458)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence 458889999999999999876554422 23565
Done!