Query 028732
Match_columns 204
No_of_seqs 128 out of 1137
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 18:25:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028732.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2224-2228//hhsearch_pdb/028732hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv3_A Manganese superoxide di 1.0 1 1 362.2 16.8 163 40-203 32-196 (248)
2 1unf_X Iron superoxide dismuta 1.0 1 1 356.7 15.3 161 41-203 14-191 (238)
3 1mng_A Manganese superoxide di 1.0 1 1 355.6 14.2 159 44-203 2-162 (203)
4 2cw3_A Pmsod2, iron superoxide 1.0 1 1 355.4 10.1 171 29-203 62-237 (280)
5 3tqj_A Superoxide dismutase [F 1.0 1 1 355.0 15.6 153 44-203 1-153 (210)
6 4f2n_A Superoxide dismutase; s 1.0 1 1 354.9 13.3 160 40-203 27-187 (230)
7 3kky_A Mnsod, superoxide dismu 1.0 1 1 354.3 12.1 157 44-203 1-169 (211)
8 3js4_A Superoxide dismutase; n 1.0 1 1 354.1 14.3 159 42-203 19-182 (227)
9 1my6_A Iron (III) superoxide d 1.0 1 1 353.5 16.1 156 45-203 1-157 (199)
10 1xre_A SODA-2, superoxide dism 1.0 1 1 353.3 15.8 158 44-203 11-170 (217)
No 1
>1gv3_A Manganese superoxide dismutase; anabaena PCC 7120,; 2.0A {Anabaena SP} SCOP: a.2.11.1 d.44.1.1
Probab=1.00 E-value=1 Score=362.25 Aligned_cols=163 Identities=33% Similarity=0.507 Sum_probs=150.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCCCC--CCCCEECH
Q ss_conf 3301021027999997875897799899999999999999999998637923316999999998703999--98602021
Q 028732 40 SKIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGN--PLPVFNNA 117 (204)
Q Consensus 40 ~~~~~~~~lp~LpY~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~~--~~~ifn~a 117 (204)
...++.|+||+|||+|++|||+||++||++||+|||++||+|||++++++++++++++++|+........ +..+||||
T Consensus 32 ~~~~~~~~LP~LpY~y~aLeP~IS~~tm~~Hh~kHHq~YV~nLN~a~~~~~~l~~~~l~~ii~~~~~~~~~~~~~i~nna 111 (248)
T 1gv3_A 32 QLGTNPAELPPLPYGYDALEKAIDAETMKLHHDKHHAAYVNNLNNALKKHPELQNSSVEALLRDLNSVPEDIRTTVRNNG 111 (248)
T ss_dssp CCCCTTCCCCCCSSCTTTTTTTSCHHHHHHHHHTHHHHHHHHHHHHHHTCGGGGGSCHHHHHHTGGGSCTTTHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 01367330799999823165637999999999999999999999998515987747876699988505466778899999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf 24345598886328999999976899999955199999999999988418667079999959999079985179999887
Q 028732 118 VQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197 (204)
Q Consensus 118 ~~~~NH~ffw~~L~p~~~~~P~~~L~~~I~~~FGS~d~fk~~F~~~A~~~fGsGWvWLv~d~~~g~L~I~~t~n~~~Pl~ 197 (204)
||++||+|||+||+|++++.|+|+|+++|+++|||||+||++|.++|.++|||||+|||+|+ +|+|.|++|+||++|++
T Consensus 112 ggh~NHs~FW~~L~P~ggg~P~g~L~~aI~~~FGS~d~Fk~~F~~aa~~~fGSGWaWLv~~~-~gkL~I~~t~Nqd~Pl~ 190 (248)
T 1gv3_A 112 GGHLNHTIFWQIMSPDGGGQPTGDIAQEINQTFGSFEEFKKQFNQAGGDRFGSGWVWLVRNP-QGQLQVVSTPNQDNPIM 190 (248)
T ss_dssp HHHHHHHHHHHTBCTTCCSSCCHHHHHHHHHHHSSHHHHHHHHHHHHHHCCSSEEEEEEECT-TSCEEEEEEETTCCGGG
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECC-CCCEEEEECCCCCCCCC
T ss_conf 99999999998448999999988999999986499999999999998547887379999879-99889985268887556
Q ss_pred CCCCCC
Q ss_conf 998238
Q 028732 198 WNDIVR 203 (204)
Q Consensus 198 ~g~~Pl 203 (204)
.|.+||
T Consensus 191 ~g~~PL 196 (248)
T 1gv3_A 191 EGSYPI 196 (248)
T ss_dssp GTCEEE
T ss_pred CCCEEE
T ss_conf 698637
No 2
>1unf_X Iron superoxide dismutase; oxidoreductase, eukaryotic, metalloprotein; 1.97A {Vigna unguiculata} SCOP: a.2.11.1 d.44.1.1
Probab=1.00 E-value=1 Score=356.70 Aligned_cols=161 Identities=53% Similarity=0.992 Sum_probs=149.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCCCCCCCCEECHHHH
Q ss_conf 30102102799999787589779989999999999999999999863792331699999999870399998602021243
Q 028732 41 KIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQV 120 (204)
Q Consensus 41 ~~~~~~~lp~LpY~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~~~~~ifn~a~~~ 120 (204)
..++.|+||+|||+|++|||+||++||++||+|||++||++||+++++++ ++++++++|+.......+...+||||||+
T Consensus 14 ~~~~~~~Lp~LpY~~~aLeP~iS~~tm~~Hh~kHh~~YV~nLN~~~~~~~-~~~~~l~~ii~~~~~~~~~~~i~nnagg~ 92 (238)
T 1unf_X 14 KVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQVVGTE-LDGKSLEEIIVTAYNKGDILPAFNNAAQV 92 (238)
T ss_dssp CCSSSCCCCCCSSCTTTTTTTSCHHHHHHHTTTHHHHHHHHHHHHC--CT-TTTCCHHHHHHHHHGGGSCCTHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHCCCHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 45531447999898210424279999999999999999999999964423-34299999999852230567888877889
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEE----------------ECCCCCE
Q ss_conf 455988863289999999768999999551999999999999884186670799999----------------5999907
Q 028732 121 WNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVL----------------KREERRL 184 (204)
Q Consensus 121 ~NH~ffw~~L~p~~~~~P~~~L~~~I~~~FGS~d~fk~~F~~~A~~~fGsGWvWLv~----------------d~~~g~L 184 (204)
+||+|||+||+|++++.|+++|+++|+++|||||+||++|+++|.++|||||+|||+ +. +++|
T Consensus 93 ~NH~~Fw~~L~P~gg~~P~g~L~~aI~~~FGS~e~fk~~F~~aa~~~fGSGW~WLv~~~~~~~~~~~~~p~~~~~-~~~L 171 (238)
T 1unf_X 93 WNHDFFWECMKPGGGGKPSGELLELIERDFGSFEKFLDEFKAAAATQFGSGWAWLAYKASKLDGENAANPPSADE-DNKL 171 (238)
T ss_dssp HHHHHHHHTBCTTCCSCCCHHHHHHHHHHHSSHHHHHHHHHHHHHHCCSSEEEEEEEECGGGC---------CCC-CSEE
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCC-CCEE
T ss_conf 998999955588999999889999999872899999999999985578773899999504453212356667788-9848
Q ss_pred EEEEECCCCCCCCCC-CCCC
Q ss_conf 998517999988799-8238
Q 028732 185 AVVKTSNAINPLVWN-DIVR 203 (204)
Q Consensus 185 ~I~~t~n~~~Pl~~g-~~Pl 203 (204)
.|++|+||++|++.| .+||
T Consensus 172 ~I~~t~n~d~pl~~g~~~PL 191 (238)
T 1unf_X 172 VVIKSPNAVNPLVWGGYYPL 191 (238)
T ss_dssp EEEEEETTCCGGGSCSEEEE
T ss_pred EEEECCCCCCCCCCCCCEEE
T ss_conf 99843678997557896368
No 3
>1mng_A Manganese superoxide dismutase; oxidoreductase(superoxide acceptor); 1.80A {Thermus thermophilus} SCOP: a.2.11.1 d.44.1.1 PDB: 3mds_A
Probab=1.00 E-value=1 Score=355.56 Aligned_cols=159 Identities=33% Similarity=0.498 Sum_probs=146.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCCCC--CCCCEECHHHHH
Q ss_conf 021027999997875897799899999999999999999998637923316999999998703999--986020212434
Q 028732 44 AYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGN--PLPVFNNAVQVW 121 (204)
Q Consensus 44 ~~~~lp~LpY~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~~--~~~ifn~a~~~~ 121 (204)
+.|+||+|||+|++|||+||++||++||+|||++||+|||+++++..+++++++++|+......+. +..+|||||||+
T Consensus 2 ~~~~Lp~LpY~~~aLep~is~~tm~~Hh~kHh~~YV~~LN~~~~~~~~~~~~~l~~ii~~~~~~p~~~~~~i~nn~gg~~ 81 (203)
T 1mng_A 2 YPFKLPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHL 81 (203)
T ss_dssp CSCCCCCCCSCGGGGTTTSCHHHHHHHHHTHHHHHHHHHHHHHHTCGGGTTCCHHHHHHTGGGSCGGGHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 88728999888342645269999999999999999999999985738776189999999986153667799999999999
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 55988863289999999768999999551999999999999884186670799999599990799851799998879982
Q 028732 122 NHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWNDI 201 (204)
Q Consensus 122 NH~ffw~~L~p~~~~~P~~~L~~~I~~~FGS~d~fk~~F~~~A~~~fGsGWvWLv~d~~~g~L~I~~t~n~~~Pl~~g~~ 201 (204)
||+|||+||+|++++.|+++|+++|+++|||||+||++|+++|.++|||||+|||+|+ +|+|.|++|+||++|++.|.+
T Consensus 82 NH~~fw~~L~p~gg~~P~g~L~~aI~~~FGS~d~fk~~f~~aa~~~fGSGW~WLv~~~-~~~L~I~~t~n~d~pl~~g~~ 160 (203)
T 1mng_A 82 NHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKDP-FGKLHVLSTPNQDNPVMEGFT 160 (203)
T ss_dssp HHHHHHHHTCTTSCSSCCHHHHHHHHHHHSSHHHHHHHHHHHHHTCCSSEEEEEEECT-TSCEEEEEEETTCCGGGGTCE
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECC-CCCEEEEECCCCCCCCCCCCE
T ss_conf 9999995568889999989999999987589999999999998448887079999989-998899833689998777997
Q ss_pred CC
Q ss_conf 38
Q 028732 202 VR 203 (204)
Q Consensus 202 Pl 203 (204)
||
T Consensus 161 Pl 162 (203)
T 1mng_A 161 PI 162 (203)
T ss_dssp EE
T ss_pred EE
T ss_conf 47
No 4
>2cw3_A Pmsod2, iron superoxide dismutase; oxidoreductase; 2.50A {Perkinsus marinus}
Probab=1.00 E-value=1 Score=355.43 Aligned_cols=171 Identities=34% Similarity=0.528 Sum_probs=146.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHCCCHHHHHHHHHCC
Q ss_conf 10000134333330102102799999787589779989999999999999999999863792-33169999999987039
Q 028732 29 SRRQLHGSQRASKIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDD-VLYGYTLDELVKVSYNS 107 (204)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lp~LpY~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~l~~~~-~~~~~~l~~li~~~~~~ 107 (204)
.|+++....+....++.|+||+|||+|++|||+||++||++||+|||++||+|| +++++ +++++++++++... .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~LP~LpY~y~ALEP~IS~etme~Hh~KHHq~YV~nL---l~~~~~~~~~~~l~~ii~~~-~~ 137 (280)
T 2cw3_A 62 LRAKPFVPSRSGVAPSSGLRMTLPYGLEALEPVISAATVDFHYNKHHQGYIQKL---LDATGLPESRINLKSLVTLG-PD 137 (280)
T ss_dssp --------------CCSSSCCCCSSCTTTTTTTSCHHHHHHHHHTHHHHHHHHH---HHHHCCCGGGCCHHHHHHHC-HH
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HHHCHHHHHCCCHHHHHHHH-HH
T ss_conf 023777678765465643479999883326552799999999999999999999---96067978629999999887-53
Q ss_pred CCCCCCEECHHHHHHHHHHHHHCCCCCCC--CCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEE
Q ss_conf 99986020212434559888632899999--9976899999955199999999999988418667079999959999079
Q 028732 108 GNPLPVFNNAVQVWNHDFFWESMQPGGGD--IPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLA 185 (204)
Q Consensus 108 ~~~~~ifn~a~~~~NH~ffw~~L~p~~~~--~P~~~L~~~I~~~FGS~d~fk~~F~~~A~~~fGsGWvWLv~d~~~g~L~ 185 (204)
.....+|||||||+||+|||+||+|++++ .|+++|+++|+++|||||+||++|.++|.++|||||+|||+|+.+|+|.
T Consensus 138 ~~~~~ifnnaggh~NHs~FW~~LsP~ggg~~~P~g~L~~aI~~~FGSfd~Fk~~F~~aA~~~fGSGWaWLv~d~~~gkL~ 217 (280)
T 2cw3_A 138 RAGENVFNAAGQIYNHNMYWLSMVPTSGSGRHVPPRLLKLIRARWGNVDEMKENFMRKATALFGSGWIWLVWDTRERRLD 217 (280)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHTBCCTTCCCCSCCHHHHHHHHHHHSSHHHHHHHHHHHHHHCCSSEEEEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEE
T ss_conf 12578898678999999999704889999989988999999986299999999999998557677289999978999589
Q ss_pred EEEECCCCCCCCC--CCCCC
Q ss_conf 9851799998879--98238
Q 028732 186 VVKTSNAINPLVW--NDIVR 203 (204)
Q Consensus 186 I~~t~n~~~Pl~~--g~~Pl 203 (204)
|++|+||++|++. |.+||
T Consensus 218 I~~t~Nqd~Pl~~~~g~~PL 237 (280)
T 2cw3_A 218 LVGTKDAHSPLSEDAGKIPL 237 (280)
T ss_dssp EEEEETTCCHHHHTSSEEEE
T ss_pred EEECCCCCCCCCCCCCCEEE
T ss_conf 98536899974367898778
No 5
>3tqj_A Superoxide dismutase [FE]; oxidoreductase; 2.00A {Coxiella burnetii}
Probab=1.00 E-value=1 Score=354.99 Aligned_cols=153 Identities=41% Similarity=0.693 Sum_probs=145.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCCCCCCCCEECHHHHHHH
Q ss_conf 02102799999787589779989999999999999999999863792331699999999870399998602021243455
Q 028732 44 AYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQVWNH 123 (204)
Q Consensus 44 ~~~~lp~LpY~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~~~~~ifn~a~~~~NH 123 (204)
+.|+||+|||+|++|||+||++||++||+|||++||+|||+++++++ ++++++++|++.. ...+||+|||++||
T Consensus 1 m~~~LP~LpY~~~aLeP~is~~tm~~Hh~kHh~~YV~nLN~a~~~~~-~~~~~l~~ii~~~-----~~~i~nnagg~~NH 74 (210)
T 3tqj_A 1 MAFELPDLPYKLNALEPHISQETLEYHHGKHHRAYVNKLNKLIEGTP-FEKEPLEEIIRKS-----DGGIFNNAAQHWNH 74 (210)
T ss_dssp -CCCCCCCSSCTTTTTTTSCHHHHHHHHHTHHHHHHHHHHHHHTTST-TTTSCHHHHHHHC-----CHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHCCCHHHHHHHH-----HHHHHCCHHHHHHH
T ss_conf 98658999999002656469999999999999999999999975957-5548999999988-----88763023899999
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 98886328999999976899999955199999999999988418667079999959999079985179999887998238
Q 028732 124 DFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWNDIVR 203 (204)
Q Consensus 124 ~ffw~~L~p~~~~~P~~~L~~~I~~~FGS~d~fk~~F~~~A~~~fGsGWvWLv~d~~~g~L~I~~t~n~~~Pl~~g~~Pl 203 (204)
+|||+||+|+++++|+++|+++|+++|||||+||++|+++|.++|||||+|||+|+ +|+|.|++|+||++|++.|.+||
T Consensus 75 ~~Fw~~L~P~ggg~P~g~L~~aI~~~FGS~d~fk~~F~~aa~~~fGSGW~WLv~~~-~gkL~I~~t~n~~~Pl~~g~~Pl 153 (210)
T 3tqj_A 75 TFYWHCMSPDGGGDPSGELASAIDKTFGSLEKFKALFTDSANNHFGSGWAWLVKDN-NGKLEVLSTVNARNPMTEGKKPL 153 (210)
T ss_dssp HHHHHTBCTTCCSCCCHHHHHHHHHHHSSHHHHHHHHHHHHHHCCSSEEEEEEECT-TCCEEEEEEETTCCGGGGTCEEE
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECC-CCCEEEEECCCCCCCCCCCCEEE
T ss_conf 99998428889999997999999988099999999999987027877289999979-99889985136899766797106
No 6
>4f2n_A Superoxide dismutase; ssgcid, NIH, niaid, SBRI, emerald biostructures, structural national institute of allergy and infectious diseases; 1.85A {Leishmania major}
Probab=1.00 E-value=1 Score=354.89 Aligned_cols=160 Identities=33% Similarity=0.566 Sum_probs=147.4
Q ss_pred CCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCCCCCCCCEECHH
Q ss_conf 3301021027999997-875897799899999999999999999998637923316999999998703999986020212
Q 028732 40 SKIIAYYGLKTPPYKL-DALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAV 118 (204)
Q Consensus 40 ~~~~~~~~lp~LpY~~-~~Lep~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~~~~~ifn~a~ 118 (204)
...++.|+||+|||+| ++|||+||++||++||+|||++||+|||++ +++ ++++++++|+..+..+..+..+|||||
T Consensus 27 p~~~~~~~LP~LpY~y~~aLeP~iS~~tm~~Hh~kHh~~YV~nLN~a--~~~-l~~~~~~~ii~~~~~~~~~~~i~nnag 103 (230)
T 4f2n_A 27 PHLRYPAELPTLGFNYKDGIQPVMSPRQLELHYSKHHSAYVDKLNTL--GKG-YEGKTIEEIILATTGINESKVMFNQAA 103 (230)
T ss_dssp TTCBSSCCCCCCSSCTTSCBTTTBCHHHHHHHHHTHHHHHHHHHTTT--CTT-CTTSBHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHH-HHCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 43356522799999701156665799999999999999999998774--498-755999999987311036788875578
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 43455988863289999999768999999551999999999999884186670799999599990799851799998879
Q 028732 119 QVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVW 198 (204)
Q Consensus 119 ~~~NH~ffw~~L~p~~~~~P~~~L~~~I~~~FGS~d~fk~~F~~~A~~~fGsGWvWLv~d~~~g~L~I~~t~n~~~Pl~~ 198 (204)
|++||+|||+||+|+++++|+ +|+++|+++|||||+||++|.++|.++|||||+|||+|+..++|.|++|+||++|++.
T Consensus 104 g~~NHs~Fw~~L~P~gg~~P~-~L~~aI~~~FGS~e~fk~~F~~aa~~~fGSGW~WLv~~~~~~~L~I~~t~N~d~Pl~~ 182 (230)
T 4f2n_A 104 QHFNHSFFWKCLSPGGKPMPK-TLENAIAKQFGSVDDFMVSFQQAGVNNFGSGWTWLCVDPQTKELLIDSTSNAGCPLTS 182 (230)
T ss_dssp HHHHHHHHHHTBCTTCBCCCH-HHHHHHHHHHSSHHHHHHHHHHHHHHSCSSEEEEEEEETTTTEEEEEEEETTCCGGGG
T ss_pred HHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEECCCCCCCCC
T ss_conf 999999999865888999849-9999999880999999999999985477771899998189996899864488996777
Q ss_pred CCCCC
Q ss_conf 98238
Q 028732 199 NDIVR 203 (204)
Q Consensus 199 g~~Pl 203 (204)
|.+||
T Consensus 183 g~~PL 187 (230)
T 4f2n_A 183 GLRPI 187 (230)
T ss_dssp TCEEE
T ss_pred CCEEE
T ss_conf 98758
No 7
>3kky_A Mnsod, superoxide dismutase [MN]; manganese, ME binding, oxidoreductase, metal binding protein; 1.80A {Deinococcus radiodurans} PDB: 2cdy_A 2ce4_A 1y67_A 2aw9_A
Probab=1.00 E-value=1 Score=354.29 Aligned_cols=157 Identities=38% Similarity=0.609 Sum_probs=145.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCCC--CCCCCEECHHHHH
Q ss_conf 02102799999787589779989999999999999999999863792331699999999870399--9986020212434
Q 028732 44 AYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSG--NPLPVFNNAVQVW 121 (204)
Q Consensus 44 ~~~~lp~LpY~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~--~~~~ifn~a~~~~ 121 (204)
|.|+||+|||+|++|||+||++||++||+|||++||+|||+++++++ ++++++++|+......+ .+..+||||||++
T Consensus 1 m~~~lp~LpY~~~aLeP~is~~tm~~Hh~kHh~~YV~~LN~~~~~~~-~~~~~~~~ii~~~~~~p~~~~~~i~nnagg~~ 79 (211)
T 3kky_A 1 MAYTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTE-FADLPVEQLIQQLDRVPADKKGALRNNAGGHA 79 (211)
T ss_dssp -CCCCCCCSSCTTTTTTTSCHHHHHHHHHTHHHHHHHHHHHHHTTST-TTTSCHHHHTTCTTTSCGGGHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHCCCHHHHHHHHHHCCHHHHHHHHCCHHHHH
T ss_conf 98658999889230646349999999999999999999999964834-22499999999875052255666740048999
Q ss_pred HHHHHHHHCCCC----CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf 559888632899----9999976899999955199999999999988418667079999959999079985179999887
Q 028732 122 NHDFFWESMQPG----GGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197 (204)
Q Consensus 122 NH~ffw~~L~p~----~~~~P~~~L~~~I~~~FGS~d~fk~~F~~~A~~~fGsGWvWLv~d~~~g~L~I~~t~n~~~Pl~ 197 (204)
||+|||+||+|+ +++.|+++|+++|+++|||||+||++|.++|.++|||||+|||+| +|+|.|++|+||++|++
T Consensus 80 NH~~fw~~L~p~~~~~gg~~P~g~L~~aI~~~FGS~d~fk~~f~~aa~~~fGSGW~WLv~~--~g~L~I~~t~n~~~Pl~ 157 (211)
T 3kky_A 80 NHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVK--DGKLDVVSTANQDNPLM 157 (211)
T ss_dssp HHHHHHHTBCC------CCCCCHHHHHHHHHHHSSHHHHC-CHHHHHHHCCSSEEEEEEEE--TTEEEEEEEETTCCGGG
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEEE--CCEEEEEEECCCCCCCC
T ss_conf 9999999648877788899999899999998679999999999999723687728999998--99999996158999765
Q ss_pred C------CCCCC
Q ss_conf 9------98238
Q 028732 198 W------NDIVR 203 (204)
Q Consensus 198 ~------g~~Pl 203 (204)
. |.+||
T Consensus 158 ~~~~~~~~~~Pl 169 (211)
T 3kky_A 158 GEAIAGVSGTPI 169 (211)
T ss_dssp CHHHHSCCSEEE
T ss_pred CCCCCCCCCCCE
T ss_conf 644456788505
No 8
>3js4_A Superoxide dismutase; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.95A {Anaplasma phagocytophilum}
Probab=1.00 E-value=1 Score=354.11 Aligned_cols=159 Identities=40% Similarity=0.726 Sum_probs=147.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH---CCCHHHHHHHHHCCC-CCCCCEECH
Q ss_conf 0102102799999787589779989999999999999999999863792331---699999999870399-998602021
Q 028732 42 IIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLY---GYTLDELVKVSYNSG-NPLPVFNNA 117 (204)
Q Consensus 42 ~~~~~~lp~LpY~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~---~~~l~~li~~~~~~~-~~~~ifn~a 117 (204)
.++.|+||+||| ++|||+||++||++||+|||++||+|||+++++++ ++ ++++++|+....+.+ .+..+||||
T Consensus 19 ~~~~~~LP~LpY--~aLeP~iS~~tm~~Hh~kHH~~YV~nLN~a~~~~~-~~~~~~~~~~~ii~~~~~~p~~~~~i~nna 95 (227)
T 3js4_A 19 PGSMFELSDLPY--EGLEPYISSHLLDRHYNGHHKTYVDVLNKLVVGTE-FEGLGNESLGDIVVKAHNSGSAGRAIFNNA 95 (227)
T ss_dssp --CCCCCCCCSS--SCBTTTBCHHHHHHHHHTHHHHHHHHHHHHTTTST-TTTCCGGGHHHHHHHHHHTGGGGHHHHHHH
T ss_pred CCCEEECCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHCCCHHHHHHHHCCCCHHHHHHHCCH
T ss_conf 788007899997--65535369999999999999999999999974146-545305999999988501504666662223
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf 24345598886328999999976899999955199999999999988418667079999959999079985179999887
Q 028732 118 VQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLV 197 (204)
Q Consensus 118 ~~~~NH~ffw~~L~p~~~~~P~~~L~~~I~~~FGS~d~fk~~F~~~A~~~fGsGWvWLv~d~~~g~L~I~~t~n~~~Pl~ 197 (204)
||++||+|||+||+|+++++|+++|+++|+++|||||+||++|.++|.++|||||+|||+|+.+|+|.|++|+||++|++
T Consensus 96 ggh~NHs~FW~~L~P~ggg~P~g~L~~aI~~~FGS~d~fk~~F~~aA~~~fGSGWaWLv~~~~~gkL~I~~t~N~~~Pl~ 175 (227)
T 3js4_A 96 AQIWNHDFYWQSMKPNGGGNPPEKLREMIEHSFGSVEGFNNAFTTSGLGQFGSGWVWLVYDEDAKALKVVSTANADSPLL 175 (227)
T ss_dssp HHHHHHHHHHHTBCTTCCSSCCHHHHHHHHHHHSSHHHHHHHHHHHHHHSCSSEEEEEEEETTTTEEEEEEEETTCCGGG
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEECCCCCCCCC
T ss_conf 99999999999638889999998999999987499999999999998437877289999958999389985147899646
Q ss_pred -CCCCCC
Q ss_conf -998238
Q 028732 198 -WNDIVR 203 (204)
Q Consensus 198 -~g~~Pl 203 (204)
.|.+||
T Consensus 176 ~~g~~PL 182 (227)
T 3js4_A 176 TQGQLPL 182 (227)
T ss_dssp STTEEEE
T ss_pred CCCCEEE
T ss_conf 7797679
No 9
>1my6_A Iron (III) superoxide dismutase; iron speroxide dismutase, thermophIle, reactive oxygen species, cyanobacteria, SOD, fesod; 1.60A {Thermosynechococcus elongatus} SCOP: a.2.11.1 d.44.1.1
Probab=1.00 E-value=1 Score=353.48 Aligned_cols=156 Identities=45% Similarity=0.848 Sum_probs=146.3
Q ss_pred CCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCCCCCCCCEECHHHHHHH
Q ss_conf 21027999997875897-79989999999999999999999863792331699999999870399998602021243455
Q 028732 45 YYGLKTPPYKLDALEPY-MSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQVWNH 123 (204)
Q Consensus 45 ~~~lp~LpY~~~~Lep~-iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~~~~~ifn~a~~~~NH 123 (204)
.|+||+|||+|++|||+ ||++||++||+|||++||+|||+++++++ ++++++++|+...........+||+|||++||
T Consensus 1 ~~~Lp~LpY~~~aLeP~Gis~~tm~~Hh~kHh~~YV~~LN~~~~~~~-~~~~~~~~ii~~~~~~~~~~~i~nn~gg~~NH 79 (199)
T 1my6_A 1 AFVQEPLPFDPGALEPYGMSAKTLEFHYGKHHKGYVDNLNKLTQDTE-LADKSLEDVIRTTYGDAAKVGIFNNAAQVWNH 79 (199)
T ss_dssp CCCCCCCSSCTTTTGGGTCCHHHHHHHHHTHHHHHHHHHHHHHTTSG-GGGSCHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 98589999792327877809999999999999999999999970405-33399999998852560466666679999999
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 98886328999999976899999955199999999999988418667079999959999079985179999887998238
Q 028732 124 DFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWNDIVR 203 (204)
Q Consensus 124 ~ffw~~L~p~~~~~P~~~L~~~I~~~FGS~d~fk~~F~~~A~~~fGsGWvWLv~d~~~g~L~I~~t~n~~~Pl~~g~~Pl 203 (204)
+|||+||+|++++.|+++|+++|+++|||||+||++|+++|.++|||||+|||+| +|+|.|++|+||++|++.|.+||
T Consensus 80 ~~fw~~L~P~gg~~P~g~L~~aI~~~FGS~d~fk~~f~~aa~~~fGSGW~WLv~~--~g~L~I~~t~n~~~p~~~g~~Pl 157 (199)
T 1my6_A 80 TFFWNSLKPGGGGVPTGDVAARINSAFGSYDEFKAQFKNAAATQFGSGWAWLVLE--AGTLKVTKTANAENPLVHGQVPL 157 (199)
T ss_dssp HHHHHTBCTTCCSCCCHHHHHHHHHHHSSHHHHHHHHHHHHHHCCSSEEEEEEEE--TTEEEEEEEETTCCGGGGTCEEE
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEEE--CCEEEEEECCCCCCCCCCCCEEE
T ss_conf 9999984428999998899999998739999999999999855777727999997--99889983468899765699747
No 10
>1xre_A SODA-2, superoxide dismutase; spine, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=1.00 E-value=1 Score=353.32 Aligned_cols=158 Identities=36% Similarity=0.556 Sum_probs=146.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCCC--CCCCCEECHHHHH
Q ss_conf 02102799999787589779989999999999999999999863792331699999999870399--9986020212434
Q 028732 44 AYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSG--NPLPVFNNAVQVW 121 (204)
Q Consensus 44 ~~~~lp~LpY~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~--~~~~ifn~a~~~~ 121 (204)
+.|+||+|||+|++|||+||++||++||+|||++||+|||+++++..+++++++++|+......+ .+..+||||||++
T Consensus 11 ~~~~Lp~LpY~~~aLeP~iS~~tm~~Hh~kHh~~YV~nLN~a~~~~~~~~~~~l~~ii~~~~~~~~~~~~~i~nn~ggh~ 90 (217)
T 1xre_A 11 SSFQLPKLSYDYDELEPYIDSNTLSIHHGKHHATYVNNLNAALENYSELHNKSLEELLCNLETLPKEIVTAVRNNGGGHY 90 (217)
T ss_dssp -CCCCCCCSSCTTTTTTTSCHHHHHHHHHTHHHHHHHHHHHHHTTCGGGTTCCHHHHHHCGGGSCTTTHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 88859999998666735279999999999999999999999985668877388887999885062667788999999999
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 55988863289999999768999999551999999999999884186670799999599990799851799998879982
Q 028732 122 NHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWNDI 201 (204)
Q Consensus 122 NH~ffw~~L~p~~~~~P~~~L~~~I~~~FGS~d~fk~~F~~~A~~~fGsGWvWLv~d~~~g~L~I~~t~n~~~Pl~~g~~ 201 (204)
||+|||+||+|++++.|+++|+++|+++|||||+||++|+++|.++|||||+|||+| +++|.|++|+||++|++.|.+
T Consensus 91 NHs~FW~~L~P~gg~~P~g~L~~aI~~~FGS~d~fk~~F~~aa~~~fGSGW~WLv~~--~~~L~I~~t~n~d~pl~~g~~ 168 (217)
T 1xre_A 91 CHSLFWEVMSPRGGGEPNGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWLVLD--GEELSVMSTPNQDTPLQEGKI 168 (217)
T ss_dssp HHHHHHHTBCTTCCSCCCHHHHHHHHHHHSSHHHHHHHHHHHHHTCCSSEEEEEEEE--TTEEEEEEEETTCCGGGGTCE
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEE--CCEEEEEECCCCCCCCCCCCE
T ss_conf 999999983438999998899999998739999999999999843888727999997--998789845776665675987
Q ss_pred CC
Q ss_conf 38
Q 028732 202 VR 203 (204)
Q Consensus 202 Pl 203 (204)
||
T Consensus 169 PL 170 (217)
T 1xre_A 169 PL 170 (217)
T ss_dssp EE
T ss_pred EE
T ss_conf 58
Done!