BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028733
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 66/110 (60%), Gaps = 7/110 (6%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G+T LH+ + G +P V+ LL+ G+ KD G PLH+AC G +++V+LL+
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH---- 65
Query: 131 ECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTP 180
K ++ T + D+PLH AA+ HVD+++LLL+ GAS N++G P
Sbjct: 66 ---KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRP 112
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 8/145 (5%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ +DG T LHL G+L V++LL+ GA +
Sbjct: 4 KKLLEAARAGQDDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
AKD+DG PLH A G +EIV++L+ + + D +G TPLH AAR H++
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-------KDKDGYTPLHLAAREGHLE 115
Query: 159 VIRLLLASGASPTKANLYGKTPSEL 183
++ +LL +GA + +GKTP +L
Sbjct: 116 IVEVLLKAGADVNAQDKFGKTPFDL 140
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D + TP HL AA+ G + + + L ++ +DG T LHL G+L V+
Sbjct: 65 DKDGYTPLHL-----AAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSA 127
+LL+ GA + A+D+ G P A G +I ++L +A
Sbjct: 119 VLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 8/145 (5%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ +DG T LHL G+L V++LL+ GA +
Sbjct: 4 KKLLEAARAGQDDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
AKD+DG PLH A G +EIV++L+ + + D +G TPLH AAR H++
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-------KDKDGYTPLHLAAREGHLE 115
Query: 159 VIRLLLASGASPTKANLYGKTPSEL 183
++ +LL +GA + +GKTP +L
Sbjct: 116 IVEVLLKAGADVNAQDKFGKTPFDL 140
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 69/125 (55%), Gaps = 8/125 (6%)
Query: 73 TALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTEC 132
T LHL Y + VQLLL+ GA + AKD+ G +PLH+AC+ G E+ +LL+ + C
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA---C 116
Query: 133 VKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSEL-PEPDTEAR 191
V M D TPLH AA V+V LLL+ GA PT N +GK+ ++ P P+ R
Sbjct: 117 VNAM----DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRER 172
Query: 192 RILEV 196
E
Sbjct: 173 LTYEF 177
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 88 QLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTP 147
+LLL +GA++ K++D PLH A +++++L + + +D+ G T
Sbjct: 231 ELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-------MNALDSLGQTA 283
Query: 148 LHHAARGEHVDVIRLLLASGASPTKANLYGKTPSEL 183
LH AA H+ RLLL+ G+ P+ +L G T +++
Sbjct: 284 LHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQM 319
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 8/145 (5%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G+ ++ ++N ++ DG T LH G+ V+LL+ +GA +
Sbjct: 6 KRLIEAAENGNKDRVKDLIEN-GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN 64
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
AKD DG PLH A G E+V+LLI+ + D++G TPLHHAA H +
Sbjct: 65 AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNA-------KDSDGRTPLHHAAENGHKE 117
Query: 159 VIRLLLASGASPTKANLYGKTPSEL 183
V++LL++ GA ++ G+TP +L
Sbjct: 118 VVKLLISKGADVNTSDSDGRTPLDL 142
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
DG T LH G+ V+LL+ +GA + D DG PL A G E+V+LL
Sbjct: 102 DGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 79/145 (54%), Gaps = 8/145 (5%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G+ ++ L+N ++ DG T LHL G+ V+LLL +GA
Sbjct: 6 KRLIEAAENGNKDRVKDLLEN-GADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
AKD DG PLH A G E+V+LL++ + D++G TPLH AA H +
Sbjct: 65 AKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA-------KDSDGKTPLHLAAENGHKE 117
Query: 159 VIRLLLASGASPTKANLYGKTPSEL 183
V++LLL+ GA P ++ G+TP +L
Sbjct: 118 VVKLLLSQGADPNTSDSDGRTPLDL 142
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D + +TP HL AA+ G ++L L + DG T LHL G+ V+
Sbjct: 67 DSDGKTPLHL-----AAENGHKEVVKLLLSQ-GADPNAKDSDGKTPLHLAAENGHKEVVK 120
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
LLL +GA D DG PL A G E+V+LL
Sbjct: 121 LLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 7/114 (6%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
DG T LH G+ V+LLL +GA AKD DG PLH A G EIV+LL++ +
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 95
Query: 130 TECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSEL 183
D++G TPLH+AA H ++++LLL+ GA P ++ G+TP +L
Sbjct: 96 PNA-------KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDL 142
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 28/54 (51%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
DG T LH G+ V+LLL +GA D DG PL A G EIV+LL
Sbjct: 102 DGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 66/114 (57%), Gaps = 7/114 (6%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
+G T LHL G+L V+LLLE GA + AKD++G PLH A G +E+V+LL+ + +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 130 TECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSEL 183
D G TPLH AAR H++V++LLL +GA + G+TP L
Sbjct: 61 VNA-------KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 107
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 13/138 (9%)
Query: 31 ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLL 90
TP HL AA+ G + ++L L+ ++ ++G T LHL G+L V+LL
Sbjct: 1 NGRTPLHL-----AARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 91 LERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHH 150
LE GA + AKD++G PLH A G +E+V+LL+ + + D G TPLH
Sbjct: 55 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-------KDKNGRTPLHL 107
Query: 151 AARGEHVDVIRLLLASGA 168
AAR H++V++LLL +GA
Sbjct: 108 AARNGHLEVVKLLLEAGA 125
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 80/145 (55%), Gaps = 8/145 (5%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G+ ++ ++N ++ DG T LH G+ V+LL+ +GA +
Sbjct: 6 KRLIEAAENGNKDRVKDLIEN-GADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 64
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
AKD DG PLH A G EIV+LLI+ + D++G TPLH+AA+ H +
Sbjct: 65 AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA-------KDSDGRTPLHYAAKEGHKE 117
Query: 159 VIRLLLASGASPTKANLYGKTPSEL 183
+++LL++ GA ++ G+TP +L
Sbjct: 118 IVKLLISKGADVNTSDSDGRTPLDL 142
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D + TP H AA+ G ++L + ++ DG T LH G+ V+
Sbjct: 67 DSDGRTPLHY-----AAKEGHKEIVKLLISK-GADVNAKDSDGRTPLHYAAKEGHKEIVK 120
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
LL+ +GA + D DG PL A G EIV+LL
Sbjct: 121 LLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 81/145 (55%), Gaps = 8/145 (5%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ +DG T LHL G+L V++LL+ GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
AKD+DG PLH A G +EIV++L+ + + D +G TPLH AAR H++
Sbjct: 75 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-------KDKDGYTPLHLAAREGHLE 127
Query: 159 VIRLLLASGASPTKANLYGKTPSEL 183
++ +LL +GA + +GKT ++
Sbjct: 128 IVEVLLKAGADVNAQDKFGKTAFDI 152
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D + TP HL AA+ G + + + L ++ +DG T LHL G+L V+
Sbjct: 77 DKDGYTPLHL-----AAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVE 130
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
+LL+ GA + A+D+ G + G ++ ++L
Sbjct: 131 VLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 8/158 (5%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
R L AA+ GDV +++ S + + T LH Y + V+ LL+ GA +
Sbjct: 10 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 69
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
AKD+ G +PLH+AC+ G E+ +LL+ + ++ D TPLH AA +
Sbjct: 70 AKDKGGLVPLHNACSYGHYEVAELLVKHGA-------VVNVADLWKFTPLHEAAAKGKYE 122
Query: 159 VIRLLLASGASPTKANLYGKTPSEL-PEPDTEARRILE 195
+ +LLL GA PTK N G TP +L + DT+ + +L
Sbjct: 123 ICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLLR 160
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 8/158 (5%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
R L AA+ GDV +++ S + + T LH Y + V+ LL+ GA +
Sbjct: 12 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 71
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
AKD+ G +PLH+AC+ G E+ +LL+ + ++ D TPLH AA +
Sbjct: 72 AKDKGGLVPLHNACSYGHYEVAELLVKHGA-------VVNVADLWKFTPLHEAAAKGKYE 124
Query: 159 VIRLLLASGASPTKANLYGKTPSEL-PEPDTEARRILE 195
+ +LLL GA PTK N G TP +L + DT+ + +L
Sbjct: 125 ICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLLR 162
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 8/158 (5%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
R L AA+ GDV +++ S + + T LH Y + V+ LL+ GA +
Sbjct: 14 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 73
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
AKD+ G +PLH+AC+ G E+ +LL+ + ++ D TPLH AA +
Sbjct: 74 AKDKGGLVPLHNACSYGHYEVAELLVKHGA-------VVNVADLWKFTPLHEAAAKGKYE 126
Query: 159 VIRLLLASGASPTKANLYGKTPSEL-PEPDTEARRILE 195
+ +LLL GA PTK N G TP +L + DT+ + +L
Sbjct: 127 ICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLLR 164
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 60/99 (60%), Gaps = 7/99 (7%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
+G T LHL G+L V+LLLE GA + AKD++G PLH A G +E+V+LL+ + +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 130 TECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGA 168
D G TPLH AAR H++V++LLL +GA
Sbjct: 61 VNA-------KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 31 ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLL 90
TP HL AA+ G + ++L L+ ++ ++G T LHL G+L V+LL
Sbjct: 1 NGRTPLHL-----AARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 91 LERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
LE GA + AKD++G PLH A G +E+V+LL+ + +
Sbjct: 55 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 103 DGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRL 162
+G PLH A G +E+V+LL+ + + D G TPLH AAR H++V++L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-------DKNGRTPLHLAARNGHLEVVKL 53
Query: 163 LLASGASPTKANLYGKTPSEL 183
LL +GA + G+TP L
Sbjct: 54 LLEAGADVNAKDKNGRTPLHL 74
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 7/114 (6%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G T LHL +G+L V++LL+ GA + AKD G PLH A G +EIV++L+ + +
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADV 106
Query: 131 ECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELP 184
D+ G TPLH AA+ H++++ +LL +GA + +GKT ++
Sbjct: 107 NA-------SDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93
TP HL AA+ G + + + L N ++ G T LHL G+L V++LL+
Sbjct: 82 TPLHL-----AARRGHLEIVEVLLKN-GADVNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
Query: 94 GASLEAKDEDGAIPLHDACAGG---FIEIVQLL 123
GA + A+D+ G + G EI+Q L
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 76/146 (52%), Gaps = 8/146 (5%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ G T LHL YG+L V++LL+ GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
A D G+ PLH A G +EIV++L+ + VD GDTPLH AA H++
Sbjct: 75 AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNA-------VDTWGDTPLHLAAIMGHLE 127
Query: 159 VIRLLLASGASPTKANLYGKTPSELP 184
++ +LL GA + +GKT ++
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 28 MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCV 87
+D+ TP HL AA +G + + + L + ++ GDT LHL + G+L V
Sbjct: 76 IDIXGSTPLHL-----AALIGHLEIVEVLLKH-GADVNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 88 QLLLERGASLEAKDEDG 104
++LL+ GA + A+D+ G
Sbjct: 130 EVLLKHGADVNAQDKFG 146
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 8/146 (5%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ DG T LHL G+L V++LL+ GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
A D G PLH A A G +EIV++L+ + D +G TPLH AA+ H++
Sbjct: 75 ASDLTGITPLHLAAATGHLEIVEVLLKHGADVNA-------YDNDGHTPLHLAAKYGHLE 127
Query: 159 VIRLLLASGASPTKANLYGKTPSELP 184
++ +LL GA + +GKT ++
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
DL TP HL AA G + + + L + ++ DG T LHL YG+L V+
Sbjct: 77 DLTGITPLHL-----AAATGHLEIVEVLLKH-GADVNAYDNDGHTPLHLAAKYGHLEIVE 130
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
+LL+ GA + A+D+ G + G ++ ++L
Sbjct: 131 VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 76/146 (52%), Gaps = 8/146 (5%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ G T LHL YG+L V++LL+ GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
A D G+ PLH A G +EIV++L+ + VD GDTPLH AA H++
Sbjct: 75 AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNA-------VDTWGDTPLHLAAIMGHLE 127
Query: 159 VIRLLLASGASPTKANLYGKTPSELP 184
++ +LL GA + +GKT ++
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 28 MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCV 87
+D+ TP HL AA +G + + + L + ++ GDT LHL + G+L V
Sbjct: 76 IDIMGSTPLHL-----AALIGHLEIVEVLLKH-GADVNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 88 QLLLERGASLEAKDEDG 104
++LL+ GA + A+D+ G
Sbjct: 130 EVLLKHGADVNAQDKFG 146
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
R L AA+ G +R+ + N ++ G T LHL G+L V++LL+ GA ++
Sbjct: 16 RKLLEAARAGQDDEVRILMAN-GADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
A D G PLH A G +EIV++L+ + + +D++G TPLH AA+ +++
Sbjct: 75 ASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNA-------MDSDGMTPLHLAAKWGYLE 127
Query: 159 VIRLLLASGASPTKANLYGKTPSELP 184
++ +LL GA + +GKT ++
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D+ TP HL AA G + + + L N ++ DG T LHL +GYL V+
Sbjct: 77 DVFGYTPLHL-----AAYWGHLEIVEVLLKN-GADVNAMDSDGMTPLHLAAKWGYLEIVE 130
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGG---FIEIVQLL 123
+LL+ GA + A+D+ G + G EI+Q L
Sbjct: 131 VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 8/145 (5%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ + G T LHL G+ V++LL+ GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
A+D DG PLH A G +EIV++L+ + DA G TPLH AA H++
Sbjct: 75 ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNA-------QDAYGLTPLHLAADRGHLE 127
Query: 159 VIRLLLASGASPTKANLYGKTPSEL 183
++ +LL GA + +GKT ++
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
G T LHL G+L V++LL+ GA + A+D+ G + G ++ ++L
Sbjct: 113 GLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 8/146 (5%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ + G T LHL + G+L V++LL+ GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
A D+ G PLH A G +EIV++L+ + + D G TPLH AA H++
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNA-------TDTYGFTPLHLAADAGHLE 127
Query: 159 VIRLLLASGASPTKANLYGKTPSELP 184
++ +LL GA + +GKT ++
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D +TP HL AA G + + + L N ++ G T LHL G+L V+
Sbjct: 77 DKMGDTPLHL-----AALYGHLEIVEVLLKN-GADVNATDTYGFTPLHLAADAGHLEIVE 130
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
+LL+ GA + A+D+ G + G ++ ++L
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G T LHL G+L V++LL+ GA + A D GA PLH A G +EIV++L+ +
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADV 106
Query: 131 ECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELP 184
D EG TPLH AA H++++ +LL GA + +GKT ++
Sbjct: 107 NAK-------DYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146
V++L+ GA + A D G PLH A G +EIV++L+ + D G T
Sbjct: 30 VRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW-------DNYGAT 82
Query: 147 PLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPEPD 187
PLH AA H++++ +LL GA + G TP L D
Sbjct: 83 PLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYD 123
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D TP HL AA+ G + + + L ++ G T LHL G+L V+
Sbjct: 44 DWLGHTPLHL-----AAKTGHLEIVEVLL-KYGADVNAWDNYGATPLHLAADNGHLEIVE 97
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
+LL+ GA + AKD +G PLH A G +EIV++L+ + + +T
Sbjct: 98 VLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKT 148
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 137 LETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPEPDTEARRILEV 196
+ D G TPLH AA+ H++++ +LL GA + YG TP L D I+EV
Sbjct: 40 VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLA-ADNGHLEIVEV 98
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
+G T LHL G+L V++LL+ GA + A+D+ G + G ++ ++L
Sbjct: 112 EGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 12/148 (8%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVED--GDTALHLTCLYGYLPCVQLLLERGAS 96
+ L AA+ G +R+ + N D ED GDT LHL G+L V++LL+ GA
Sbjct: 16 KKLLEAARAGQDDEVRILMAN---GADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 97 LEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEH 156
+ A D G+ PLH A G +EIV++L+ + D G TPLH AA H
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNA-------DDTIGSTPLHLAADTGH 125
Query: 157 VDVIRLLLASGASPTKANLYGKTPSELP 184
++++ +LL GA + +GKT ++
Sbjct: 126 LEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 28 MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCV 87
+D TP HL AA+ G + + + L ++ G T LHL G+L V
Sbjct: 76 LDFSGSTPLHL-----AAKRGHLEIVEVLL-KYGADVNADDTIGSTPLHLAADTGHLEIV 129
Query: 88 QLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
++LL+ GA + A+D+ G + G ++ ++L
Sbjct: 130 EVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G T LHL +G+L V++LL+ GA + A D G+ PLH A G +EIV++L+ + +
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADV 106
Query: 131 ECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELP 184
D G TPLH AA H++++ +LL GA + +GKT ++
Sbjct: 107 NA-------KDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D+ TP HL AA G + + + L N ++ G T LHL +G+L V+
Sbjct: 44 DVVGWTPLHL-----AAYWGHLEIVEVLLKN-GADVNAYDTLGSTPLHLAAHFGHLEIVE 97
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
+LL+ GA + AKD++G PLH A G +EIV++L+ + + +T
Sbjct: 98 VLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKT 148
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D TP HL AA G + + + L N ++ ++G T LHL G+L V+
Sbjct: 77 DTLGSTPLHL-----AAHFGHLEIVEVLLKN-GADVNAKDDNGITPLHLAANRGHLEIVE 130
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGG---FIEIVQLL 123
+LL+ GA + A+D+ G + G EI+Q L
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQKL 168
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 8/127 (6%)
Query: 54 RLALDNLSG-SIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC 112
RLA SG ++ +DG + LH+ L+G + LLL+ GA+ A++ D A+PLH AC
Sbjct: 68 RLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLAC 127
Query: 113 AGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTK 172
G ++V+ L++S + D G+TPL +A G H +++ LLL GAS
Sbjct: 128 QQGHFQVVKCLLDSNAKP-------NKKDLSGNTPLIYACSGGHHELVALLLQHGASINA 180
Query: 173 ANLYGKT 179
+N G T
Sbjct: 181 SNNKGNT 187
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93
P HL A Q G ++ LD+ + ++ G+T L C G+ V LLL+
Sbjct: 121 VPLHL-----ACQQGHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSGGHHELVALLLQH 174
Query: 94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECV-KRMLETVD 141
GAS+ A + G LH+A + +V+LL+ + + + KR VD
Sbjct: 175 GASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVD 223
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 12/148 (8%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVED--GDTALHLTCLYGYLPCVQLLLERGAS 96
+ L AA+ G +R+ + N D ED G T LHL G+L V++LL+ GA
Sbjct: 16 KKLLEAARAGRDDEVRILMAN---GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 97 LEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEH 156
+ A D G PL A G +EIV++L+ + + D EG TPLH AA H
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN-------DMEGHTPLHLAAMFGH 125
Query: 157 VDVIRLLLASGASPTKANLYGKTPSELP 184
++++ +LL +GA + +GKT ++
Sbjct: 126 LEIVEVLLKNGADVNAQDKFGKTAFDIS 153
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D TP HL AA G + + + L N ++ G T L L L+G+L V+
Sbjct: 44 DASGWTPLHL-----AAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLRLAALFGHLEIVE 97
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
+LL+ GA + A D +G PLH A G +EIV++L+ + + + +T
Sbjct: 98 VLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKT 148
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 8/146 (5%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ G T LHL +G+L V++LL+ GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
A D G PLH A G +E+V++L+ + + D G TPLH AA H++
Sbjct: 75 ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNA-------NDHNGFTPLHLAANIGHLE 127
Query: 159 VIRLLLASGASPTKANLYGKTPSELP 184
++ +LL GA + +GKT ++
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93
TP HL AA G + + + L N ++ +G T LHL G+L V++LL+
Sbjct: 82 TPLHL-----AADRGHLEVVEVLLKN-GADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
Query: 94 GASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
GA + A+D+ G + G ++ ++L
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 8/146 (5%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ G T LHL + G+L V++LL+ GA ++
Sbjct: 16 KKLLEAARAGQDDEVRILIAN-GADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
A D G PLH A G +EIV++L+ + D G TPLH AA H++
Sbjct: 75 AADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNA-------FDMTGSTPLHLAADEGHLE 127
Query: 159 VIRLLLASGASPTKANLYGKTPSELP 184
++ +LL GA + +GKT ++
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAFDIS 153
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 8/146 (5%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ G T LHL G+L +++LL+ A +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
A D+ G PLH A G +EIV++L+ + +D +G TPLH AA H++
Sbjct: 75 ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNA-------MDYQGYTPLHLAAEDGHLE 127
Query: 159 VIRLLLASGASPTKANLYGKTPSELP 184
++ +LL GA + +GKT ++
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146
V++L+ GA + A D G PLH G +EI+++L+ A+ D G T
Sbjct: 30 VRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNAS-------DKSGWT 82
Query: 147 PLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPEPD 187
PLH AA H++++ +LL GA + G TP L D
Sbjct: 83 PLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAED 123
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGG---FIEIVQLL 123
G T LHL G+L V++LL+ GA + A+D+ G + G EI+Q L
Sbjct: 113 GYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G T LH+ G+L V++LL GA + A D +G PLH A + G +EIV++L+ +
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV 94
Query: 131 ECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSEL 183
DA G TPL+ AA H++++ +LL GA + +GKT ++
Sbjct: 95 NA-------KDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDI 140
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 7/147 (4%)
Query: 34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93
+P + D+ + G+ ++RL LDN +++ + G + LH C G V++L+ R
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAAR 153
GA + + PLH A + G +IVQ L+ K + V+ G+ PLH+A
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-------YKADINAVNEHGNVPLHYACF 114
Query: 154 GEHVDVIRLLLASGASPTKANLYGKTP 180
V L+A+GA + N YG+ P
Sbjct: 115 WGQDQVAEDLVANGALVSICNKYGEMP 141
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 15/153 (9%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDN-LSGSIDEPVEDGDTALHLTCLYGYLPCV 87
++ TP HL AAQ G + L L +G++ + G T LHL G++P
Sbjct: 242 SVQGVTPLHL-----AAQEGHAEMVALLLSKQANGNLGN--KSGLTPLHLVAQEGHVPVA 294
Query: 88 QLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTP 147
+L++ G ++A G PLH A G I++V+ L+ + ++ G +P
Sbjct: 295 DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL-------GYSP 347
Query: 148 LHHAARGEHVDVIRLLLASGASPTKANLYGKTP 180
LH AA+ H D++ LLL +GASP + + G TP
Sbjct: 348 LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTP 380
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 73 TALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTEC 132
T LH+ G+LP V+ LL+RGAS + PLH A G E+ + L+ + +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 133 VKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTP 180
+ + TPLH AAR H ++++LLL + A+P A G TP
Sbjct: 76 KAK-------DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 116
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
+++ ETP H+ AA+ G + L N ++ +D T LH G+ V+
Sbjct: 44 NVKVETPLHM-----AARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLHCAARIGHTNMVK 97
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPL 148
LLLE A+ G PLH A G +E V L+ + C+ + +G TPL
Sbjct: 98 LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK-------KGFTPL 150
Query: 149 HHAARGEHVDVIRLLLASGASPTKANLYGKTP 180
H AA+ V V LLL A P A G TP
Sbjct: 151 HVAAKYGKVRVAELLLERDAHPNAAGKNGLTP 182
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 80/177 (45%), Gaps = 16/177 (9%)
Query: 20 LFEEDGVNMDLES---ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALH 76
L E+ N +L + TP H+ AA+ G V ++ LAL S + G T LH
Sbjct: 98 LLLENNANPNLATTAGHTPLHI-----AAREGHVETV-LALLEKEASQACMTKKGFTPLH 151
Query: 77 LTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRM 136
+ YG + +LLLER A A ++G PLH A ++IV+LL+
Sbjct: 152 VAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP------ 205
Query: 137 LETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPEPDTEARRI 193
+ G TPLH AA+ V+V R LL G S ++ G TP L + A +
Sbjct: 206 -HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV 261
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 25/172 (14%)
Query: 19 ALFEEDGVN--MDLESETPPHLRDLAAAAQLGDVHSLRLALD-----NLSGSIDEPVEDG 71
AL E++ M + TP H+ AA+ G V L L+ N +G ++G
Sbjct: 131 ALLEKEASQACMTKKGFTPLHV-----AAKYGKVRVAELLLERDAHPNAAG------KNG 179
Query: 72 DTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTE 131
T LH+ + L V+LLL RG S + +G PLH A +E+ + L+
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239
Query: 132 CVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSEL 183
E+V +G TPLH AA+ H +++ LLL+ A+ N G TP L
Sbjct: 240 A-----ESV--QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL 284
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 64 IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
+D G T LH+ YG + V+ LL+ A + AK + G PLH A G +IV LL
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363
Query: 124 I-NSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLL 163
+ N AS E V ++G TPL A R ++ V +L
Sbjct: 364 LKNGASPNE--------VSSDGTTPLAIAKRLGYISVTDVL 396
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Query: 62 GSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQ 121
GS P +G T LH+ + + LL+ G S A+ G PLH A G E+V
Sbjct: 203 GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA 262
Query: 122 LLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTP 180
LL++ + + G TPLH A+ HV V +L+ G G TP
Sbjct: 263 LLLSKQANGNLGNK-------SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP 314
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 7/141 (4%)
Query: 40 DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA 99
D+ + G+ ++RL LDN +++ + G + LH C G V++L+ RGA +
Sbjct: 3 DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 62
Query: 100 KDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDV 159
+ PLH A + G +IVQ L+ K + V+ G+ PLH+A V
Sbjct: 63 MNRGDDTPLHLAASHGHRDIVQKLLQ-------YKADINAVNEHGNVPLHYACFWGQDQV 115
Query: 160 IRLLLASGASPTKANLYGKTP 180
L+A+GA + N YG+ P
Sbjct: 116 AEDLVANGALVSICNKYGEMP 136
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
+DG+T LH G+ V+ LL +GA + A+ +DG PLH A G EIV+LL+ A
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL--AK 64
Query: 129 GTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGA 168
G + R +G+TP H A + H ++++LL A GA
Sbjct: 65 GADVNAR-----SKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 64 IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
++ +DG+T LHL G+ V+LLL +GA + A+ +DG P H A G EIV+LL
Sbjct: 35 VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 102 EDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIR 161
+DG PLH+A G E V+ L++ + + +G+TPLH AA+ H ++++
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK-------DGNTPLHLAAKNGHAEIVK 59
Query: 162 LLLASGASPTKANLYGKTPSELPEPD 187
LLLA GA + G TP L + +
Sbjct: 60 LLLAKGADVNARSKDGNTPEHLAKKN 85
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 143 EGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPEPDTEARRILEVAASG 200
+G+TPLH+AA+ H + ++ LL+ GA + G TP L + A + + A G
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 31 ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLL 90
+ TP HL AA+ G ++L L ++ +DG+T HL G+ V+LL
Sbjct: 41 DGNTPLHL-----AAKNGHAEIVKLLLAK-GADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Query: 91 LERGASLEAK 100
+GA + A+
Sbjct: 95 DAKGADVNAR 104
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Query: 40 DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA 99
+LA + +L ++ LA +L+ D+ D TALH C G+ V+ LL+ G +
Sbjct: 13 NLAYSGKLEELKESILADKSLATRTDQ---DSRTALHWACSAGHTEIVEFLLQLGVPVND 69
Query: 100 KDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDV 159
KD+ G PLH A + G EIV+ L+ + + V+ G TPLH+AA ++
Sbjct: 70 KDDAGWSPLHIAASAGRDEIVKALLGKGA-------QVNAVNQNGCTPLHYAASKNRHEI 122
Query: 160 IRLLLASGASPTKANLYGKT 179
+LL GA+P + Y T
Sbjct: 123 AVMLLEGGANPDAKDHYEAT 142
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
++G T LH +LLE GA+ +AKD A +H A A G ++++ +L+ +
Sbjct: 105 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA 164
Query: 129 GTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPE 185
T D EG+TPLH A E V+ +LL++ GAS N KTP ++ +
Sbjct: 165 STN-------IQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 214
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 73 TALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTEC 132
TA+H G L + +LL AS +D +G PLH AC +E +LL++ +
Sbjct: 142 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS--- 198
Query: 133 VKRMLETVDAEGDTPLHHAARGEHVDVIRLL 163
+ + E TPL A G + + R++
Sbjct: 199 ----IYIENKEEKTPLQVAKGGLGLILKRMV 225
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
+G+T LHL C + +LL+ +GAS+ ++++ PL A GG I++ ++
Sbjct: 172 EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMV 225
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 12/141 (8%)
Query: 40 DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA 99
+LA + +L ++ LA +L+ D+ D TALH C G+ V+ LL+ G +
Sbjct: 12 NLAYSGKLDELKERILADKSLATRTDQ---DSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 100 KDEDGAIPLHDACAGGFIEIVQ-LLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
KD+ G PLH A + G EIV+ LL+ A + V+ G TPLH+AA +
Sbjct: 69 KDDAGWSPLHIAASAGXDEIVKALLVKGAH--------VNAVNQNGCTPLHYAASKNRHE 120
Query: 159 VIRLLLASGASPTKANLYGKT 179
+ +LL GA+P + Y T
Sbjct: 121 IAVMLLEGGANPDAKDHYDAT 141
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
++G T LH +LLE GA+ +AKD A +H A A G +++V +L+ +
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163
Query: 129 GTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPE 185
T D EG+TPLH A E V+ + L+ GAS N KTP ++ +
Sbjct: 164 ST-------NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Query: 40 DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA 99
+LA + +L ++ LA +L+ D+ D TALH C G+ V+ LL+ G +
Sbjct: 12 NLAYSGKLEELKESILADKSLATRTDQ---DSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 100 KDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDV 159
KD+ G PLH A + G EIV+ L+ + + V+ G TPLH+AA ++
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKALLGKGA-------QVNAVNQNGCTPLHYAASKNRHEI 121
Query: 160 IRLLLASGASPTKANLYGKT 179
+LL GA+P + Y T
Sbjct: 122 AVMLLEGGANPDAKDHYEAT 141
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
++G T LH +LLE GA+ +AKD A +H A A G ++++ +L+ +
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA 163
Query: 129 GTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPE 185
T D EG+TPLH A E V+ +LL++ GAS N KTP ++ +
Sbjct: 164 STN-------IQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 213
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 73 TALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTEC 132
TA+H G L + +LL AS +D +G PLH AC +E +LL++ +
Sbjct: 141 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS--- 197
Query: 133 VKRMLETVDAEGDTPLHHAARGEHVDVIRLL 163
+ + E TPL A G + + R++
Sbjct: 198 ----IYIENKEEKTPLQVAKGGLGLILKRMV 224
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
+G+T LHL C + +LL+ +GAS+ ++++ PL A GG I++ ++
Sbjct: 171 EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMV 224
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 12/141 (8%)
Query: 40 DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA 99
+LA + +L ++ LA +L+ D+ D TALH C G+ V+ LL+ G +
Sbjct: 12 NLAYSGKLDELKERILADKSLATRTDQ---DSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 100 KDEDGAIPLHDACAGGFIEIVQ-LLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
KD+ G PLH A + G EIV+ LL+ A + V+ G TPLH+AA +
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKALLVKGAH--------VNAVNQNGCTPLHYAASKNRHE 120
Query: 159 VIRLLLASGASPTKANLYGKT 179
+ +LL GA+P + Y T
Sbjct: 121 IAVMLLEGGANPDAKDHYDAT 141
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
++G T LH +LLE GA+ +AKD A +H A A G +++V +L+ +
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163
Query: 129 GTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPE 185
T D EG+TPLH A E V+ + L+ GAS N KTP ++ +
Sbjct: 164 ST-------NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 16/175 (9%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVED--GDTALHLTCLYGYLPC 86
D E T HL AA+ G ++ L N G +D +D G T + Y ++
Sbjct: 74 DAEGSTCLHL-----AAKKGHYEVVQYLLSN--GQMDVNCQDDGGWTPMIWATEYKHVDL 126
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146
V+LLL +G+ + +D + I LH A G ++I ++L+ + K L V+ GD+
Sbjct: 127 VKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA-------KCDLHAVNIHGDS 179
Query: 147 PLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPEPDTEARRILEVAASGQ 201
PLH AAR D + L L+ + T N G+TP + +++ L+++ + Q
Sbjct: 180 PLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
++ + LH G++ +L++ GA+++ ED PL +A +E V+ LI + +
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 129 GTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASG 167
+++ DAEG T LH AA+ H +V++ LL++G
Sbjct: 69 -------LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 107 PLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLAS 166
PLH A G ++I +L+ + + ++T + TPL AA H++ ++ L+ +
Sbjct: 14 PLHAAAEAGHVDICHMLVQAGAN-------IDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66
Query: 167 GASPTKANLYGKTPSELPEPDTEARRILEVAASGQ---TCQ 204
GA + G T L + + ++GQ CQ
Sbjct: 67 GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ 107
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 146 TPLHHAARGEHVDVIRLLLASGASPTKANLYGKTP 180
+PLH AA HVD+ +L+ +GA+ + +TP
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTP 47
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 15/125 (12%)
Query: 50 VHSLRLALDNL---SGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAI 106
+H +L+L NL +++ D + LH CL G+L CV++LL+ GA + D
Sbjct: 68 IHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHT 127
Query: 107 PLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGD--TPLHHAARGEHVDVIRLLL 164
PL +AC G + V LL+ + +V E D +P+H AAR HV+ + L+
Sbjct: 128 PLFNACVSGSWDCVNLLLQHGA----------SVQPESDLASPIHEAARRGHVECVNSLI 177
Query: 165 ASGAS 169
A G +
Sbjct: 178 AYGGN 182
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 27/183 (14%)
Query: 37 HLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGAS 96
H+ L A G + +++ L + ++ D T L C+ G CV LLL+ GAS
Sbjct: 92 HVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 150
Query: 97 LEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTE--------------------CVKRM 136
++ + D A P+H+A G +E V LI + CVK++
Sbjct: 151 VQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL 209
Query: 137 LET----VDAEG-DTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPEPDTEAR 191
LE+ +G D+PLH R ++ LL+ GA N GK P EL P++
Sbjct: 210 LESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLA 269
Query: 192 RIL 194
++
Sbjct: 270 QLF 272
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 107 PLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLAS 166
P+H+A G ++ LI+ + + A+ +PLH A G H+ +++LL
Sbjct: 62 PMHEAAIHGHQLSLRNLISQGWA-------VNIITADHVSPLHEACLGGHLSCVKILLKH 114
Query: 167 GASPTKANLYGKTP 180
GA TP
Sbjct: 115 GAQVNGVTADWHTP 128
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 15/125 (12%)
Query: 50 VHSLRLALDNL---SGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAI 106
+H +L+L NL +++ D + LH CL G+L CV++LL+ GA + D
Sbjct: 12 IHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHT 71
Query: 107 PLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGD--TPLHHAARGEHVDVIRLLL 164
PL +AC G + V LL+ + +V E D +P+H AAR HV+ + L+
Sbjct: 72 PLFNACVSGSWDCVNLLLQHGA----------SVQPESDLASPIHEAARRGHVECVNSLI 121
Query: 165 ASGAS 169
A G +
Sbjct: 122 AYGGN 126
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 27/180 (15%)
Query: 34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93
T H+ L A G + +++ L + ++ D T L C+ G CV LLL+
Sbjct: 33 TADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH 91
Query: 94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTE--------------------CV 133
GAS++ + D A P+H+A G +E V LI + CV
Sbjct: 92 GASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV 150
Query: 134 KRMLET----VDAEG-DTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPEPDT 188
K++LE+ +G D+PLH AR ++ LL+ GA N GK P EL P++
Sbjct: 151 KKLLESGADVNQGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES 210
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 107 PLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLAS 166
P+H+A G ++ LI+ + + A+ +PLH A G H+ +++LL
Sbjct: 6 PMHEAAIHGHQLSLRNLISQGWA-------VNIITADHVSPLHEACLGGHLSCVKILLKH 58
Query: 167 GASPTKANLYGKTP 180
GA TP
Sbjct: 59 GAQVNGVTADWHTP 72
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 8/146 (5%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA G +R+ + N ++ ++G T LHL G L V++LL+ GA +
Sbjct: 8 KKLLEAAAAGQDDEVRILMAN-GADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN 66
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVD 158
A D G PLH A G +EIV++L+ + R G TPLH AA ++
Sbjct: 67 ASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDR-------AGWTPLHLAALSGQLE 119
Query: 159 VIRLLLASGASPTKANLYGKTPSELP 184
++ +LL GA + G T ++
Sbjct: 120 IVEVLLKHGADVNAQDALGLTAFDIS 145
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 121 QLLINSASGTECVKRML-------ETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKA 173
+LL +A+G + R+L D G TPLH AA ++++ +LL +GA +
Sbjct: 9 KLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 174 NLYGKTPSELPEPD 187
+ G TP L D
Sbjct: 69 DSAGITPLHLAAYD 82
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146
V++L+ GA + AKDE G PL+ A A G +EIV++L+ + + VDA G T
Sbjct: 30 VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA-------VDAIGFT 82
Query: 147 PLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELP 184
PLH AA H+++ +LL GA + +GKT ++
Sbjct: 83 PLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ E G T L+L +G+L V++LL+ GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
A D G PLH A G +EI ++L+ + + +T
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKT 115
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGG---FIEIVQLL 123
G T LHL G+L ++LL+ GA + A+D+ G + G EI+Q L
Sbjct: 80 GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Query: 129 GTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELP 184
G++ K++LE AAR D +R+L+A+GA + YG TP L
Sbjct: 11 GSDLGKKLLE------------AARAGQDDEVRILMANGADVNAKDEYGLTPLYLA 54
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 38 LRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGAS- 96
+ LAA +L + DNL +++P E G T L +G + V+ LLE GA
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNL---VNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 97 -LEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGE 155
+ AK+ + A+ L A GG+ +IV LL+ + D G TPL +A RG
Sbjct: 63 HILAKERESALSL--ASTGGYTDIVGLLLERDVD-------INIYDWNGGTPLLYAVRGN 113
Query: 156 HVDVIRLLLASGASPTKANLYGKTPSEL 183
HV + LLA GA T G TP +L
Sbjct: 114 HVKCVEALLARGADLTTEADSGYTPMDL 141
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 15/118 (12%)
Query: 18 NALFEEDGVNMDLESETPPHLR--------DLAAAAQLGDVHSLRLALDNLSGSIDEPVE 69
+A E + V LE PH+ LA+ D+ L L D +D +
Sbjct: 44 SAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD-----VDINIY 98
Query: 70 D--GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
D G T L ++ CV+ LL RGA L + + G P+ A A G+ ++ Q++ N
Sbjct: 99 DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 11/110 (10%)
Query: 64 IDEPVEDGDTALHLTCLYGYLPCVQLLLERGA--SLEAKDEDGAIPLHDACAGGFIEIVQ 121
I+ E+G T L +G + V+ LL+ GA L K + A+ L AC+ G+ +IV+
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSL--ACSKGYTDIVK 102
Query: 122 LLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPT 171
+L++ + D G TPL +A G HV +++LL SGA PT
Sbjct: 103 MLLDCGVD-------VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 145
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 22 EEDGVN-MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDG-DTALHLTC 79
+E+ +N D E TP L AA G + + L N G+ + + G ++AL L C
Sbjct: 41 QENVINHTDEEGFTP-----LMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESALSLAC 93
Query: 80 LYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
GY V++LL+ G + D +G PL A G ++ V++L+ S +
Sbjct: 94 SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 134 KRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASP 170
+ ++ D EG TPL AA + V+ LL +GA P
Sbjct: 42 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 78
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 11/110 (10%)
Query: 64 IDEPVEDGDTALHLTCLYGYLPCVQLLLERGA--SLEAKDEDGAIPLHDACAGGFIEIVQ 121
I+ E+G T L +G + V+ LL+ GA L K + A+ L AC+ G+ +IV+
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSL--ACSKGYTDIVK 84
Query: 122 LLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPT 171
+L++ + D G TPL +A G HV +++LL SGA PT
Sbjct: 85 MLLDCGVD-------VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 127
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 22 EEDGVN-MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDG-DTALHLTC 79
+E+ +N D E TP L AA G + + L N G+ + + G ++AL L C
Sbjct: 23 QENVINHTDEEGFTP-----LMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESALSLAC 75
Query: 80 LYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
GY V++LL+ G + D +G PL A G ++ V++L+ S +
Sbjct: 76 SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 134 KRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASP 170
+ ++ D EG TPL AA + V+ LL +GA P
Sbjct: 24 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 60
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 11/110 (10%)
Query: 64 IDEPVEDGDTALHLTCLYGYLPCVQLLLERGA--SLEAKDEDGAIPLHDACAGGFIEIVQ 121
I+ E+G T L +G + V+ LL+ GA L K + A+ L AC+ G+ +IV+
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSL--ACSKGYTDIVK 86
Query: 122 LLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPT 171
+L++ + D G TPL +A G HV +++LL SGA PT
Sbjct: 87 MLLDCGVD-------VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 129
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 22 EEDGVN-MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDG-DTALHLTC 79
+E+ +N D E TP L AA G + + L N G+ + + G ++AL L C
Sbjct: 25 QENVINHTDEEGFTP-----LMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESALSLAC 77
Query: 80 LYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
GY V++LL+ G + D +G PL A G ++ V++L+ S +
Sbjct: 78 SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 134 KRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASP 170
+ ++ D EG TPL AA + V+ LL +GA P
Sbjct: 26 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
DG TALH C+ + V+ L+E GA++ D +G IPLH A + G+++I + LI+ +
Sbjct: 72 DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA- 130
Query: 130 TECVKRMLETVDAEGDTPL 148
+ V++EGDTPL
Sbjct: 131 ------HVGAVNSEGDTPL 143
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 72 DTALHLT-CLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
D A+ L C G V LLERGA + + DG LH AC +++V+ L+ + +
Sbjct: 40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN- 98
Query: 131 ECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSEL 183
+ D EG PLH AA ++D+ L++ GA N G TP ++
Sbjct: 99 ------INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 61 SGSIDEP--VEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIE 118
SG I++ + G TALH+ GY ++LL++ + KD DG PLH A G E
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE 246
Query: 119 IVQLLINSASGTECVKRMLET 139
++L+ + E V ++ +T
Sbjct: 247 ACRILVENLCDMEAVNKVGQT 267
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 104 GAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLL 163
G LH A A G+ E+++LLI + + + D +G TPLH AA + R+L
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQA-------RYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251
Query: 164 LASGASPTKANLYGKTPSELPEPD 187
+ + N G+T ++ + D
Sbjct: 252 VENLCDMEAVNKVGQTAFDVADED 275
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 21/152 (13%)
Query: 49 DVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPL 108
+V ++ ++N +I++P +G LH GYL + L+ +GA + A + +G PL
Sbjct: 85 NVDMVKFLVEN-GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143
Query: 109 HDACAGGFIEIVQLLIN-SASGTECVKRMLETV---DAE----------------GDTPL 148
A E++Q +N E ++ E + DA G T L
Sbjct: 144 DIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTAL 203
Query: 149 HHAARGEHVDVIRLLLASGASPTKANLYGKTP 180
H AA + +V++LL+ + + G TP
Sbjct: 204 HVAAAKGYTEVLKLLIQARYDVNIKDYDGWTP 235
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146
V++L+ GA + A+D+ G PLH A +EIV++L+ + + + DA G+T
Sbjct: 30 VRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI-------DAIGET 82
Query: 147 PLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELP 184
PLH A H++++ +LL GA + +GKT ++
Sbjct: 83 PLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVED--GDTALHLTCLYGYLPCVQLLLERGAS 96
+ L AA+ G +R+ + N D ED G T LHL + +L V++LL+ GA
Sbjct: 16 KKLLEAARAGQDDEVRILMAN---GADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 97 LEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
+ A D G PLH G +EIV++L+ + + +T
Sbjct: 73 VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
G+T LHL +YG+L V++LL+ GA + A+D+ G + G ++ ++L
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 69/148 (46%), Gaps = 14/148 (9%)
Query: 38 LRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGAS- 96
+ LAA +L + DNL +++P E G T L +G + V+ LLE GA
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNL---VNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 97 -LEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGE 155
+ AK+ + A+ L A GG+ +IV LL+ + D G TPL +A G
Sbjct: 63 HILAKERESALSL--ASTGGYTDIVGLLLERDVD-------INIYDWNGGTPLLYAVHGN 113
Query: 156 HVDVIRLLLASGASPTKANLYGKTPSEL 183
HV + LLA GA T G TP +L
Sbjct: 114 HVKCVEALLARGADLTTEADSGYTPMDL 141
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 15/118 (12%)
Query: 18 NALFEEDGVNMDLESETPPHLR--------DLAAAAQLGDVHSLRLALDNLSGSIDEPVE 69
+A E + V LE PH+ LA+ D+ L L D +D +
Sbjct: 44 SAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD-----VDINIY 98
Query: 70 D--GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
D G T L ++ CV+ LL RGA L + + G P+ A A G+ ++ Q++ N
Sbjct: 99 DWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146
V++L+ GA + A DEDG PLH A G +EIV++L+ + D G T
Sbjct: 30 VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE-------DNFGIT 82
Query: 147 PLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELP 184
PLH AA H++++ +LL GA + +GKT ++
Sbjct: 83 PLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ EDG T LHL G+L V++LL+ GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
A+D G PLH A G +EIV++L+ + + +T
Sbjct: 75 AEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 14/87 (16%)
Query: 18 NALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHL 77
NAL +EDG+ TP HL AAQLG + + + L ++ G T LHL
Sbjct: 41 NAL-DEDGL-------TPLHL-----AAQLGHLEIVEVLL-KYGADVNAEDNFGITPLHL 86
Query: 78 TCLYGYLPCVQLLLERGASLEAKDEDG 104
+ G+L V++LL+ GA + A+D+ G
Sbjct: 87 AAIRGHLEIVEVLLKHGADVNAQDKFG 113
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146
V++L+ GA + A D+ G PLH A G +EIV++L+ + D+ G T
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS-------DSWGRT 82
Query: 147 PLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELP 184
PLH AA H++++ +LL GA + +GKT ++
Sbjct: 83 PLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
G T LHL G+L V++LL+ GA + A D G PLH A G +EIV++L+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLL 100
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 28 MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCV 87
MD TP HL AA+ G + + + L + ++ G T LHL G+L V
Sbjct: 43 MDDAGVTPLHL-----AAKRGHLEIVEVLLKH-GADVNASDSWGRTPLHLAATVGHLEIV 96
Query: 88 QLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
++LLE GA + A+D+ G + G ++ ++L
Sbjct: 97 EVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146
V++L+ GA + A D+ G PLH A G +EIV++L+ G + R D G T
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH--GADVNAR-----DIWGRT 82
Query: 147 PLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELP 184
PLH AA H++++ +LL GA + +GKT ++
Sbjct: 83 PLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
G T LHL G+L V++LL+ GA + A+D G PLH A G +EIV++L+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLL 100
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
G T LHL G+L V++LLE GA + A+D+ G + G ++ ++L
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 34 TPPHLRDLAAAAQLGDVHSLRLALDN-LSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92
TP H+ A +G++ ++ D L +++ G T LHL + Q L+E
Sbjct: 74 TPFHI-----ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAA 152
GAS+ KD+ IPLH A + G +++++LL K + D +G TPL HA
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG------KSAVNWQDKQGWTPLFHAL 182
Query: 153 RGEHVDVIRLLL 164
H D LL+
Sbjct: 183 AEGHGDAAVLLV 194
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 53/138 (38%), Gaps = 32/138 (23%)
Query: 75 LHLTCLYGYLPCVQLLLERGASLE-AKDEDGAIPLHDACAGGFIEIVQLLIN-------- 125
LH C+ VQ LL SL KD+DG IPLH + + EI L++
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 126 ---------------SASGTECVKRM--------LETVDAEGDTPLHHAARGEHVDVIRL 162
S E VK + L + +G T LH A + +V +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 163 LLASGASPTKANLYGKTP 180
L+ +GAS + + + P
Sbjct: 126 LIENGASVRIKDKFNQIP 143
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146
V++L+ GA + A D+ G PLH A G +EIV++L+ + D G T
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS-------DIWGRT 82
Query: 147 PLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELP 184
PLH AA H++++ +LL GA + +GKT ++
Sbjct: 83 PLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
G T LHL G+L V++LL+ GA + A D G PLH A G +EIV++L+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLL 100
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGG---FIEIVQLL 123
G T LHL G+L V++LLE GA + A+D+ G + G EI+Q L
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 34 TPPHLRDLAAAAQLGDVHSLRLALDN-LSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92
TP H+ A +G++ ++ D L +++ G T LHL + Q L+E
Sbjct: 74 TPFHI-----ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAA 152
GAS+ KD+ IPLH A + G +++++LL K + D +G TPL HA
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG------KSAVNWQDKQGWTPLFHAL 182
Query: 153 RGEHVDVIRLLL 164
H D LL+
Sbjct: 183 AEGHGDAAVLLV 194
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 53/138 (38%), Gaps = 32/138 (23%)
Query: 75 LHLTCLYGYLPCVQLLLERGASLE-AKDEDGAIPLHDACAGGFIEIVQLLIN-------- 125
LH C+ VQ LL SL KD+DG IPLH + + EI L++
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 126 ---------------SASGTECVKRM--------LETVDAEGDTPLHHAARGEHVDVIRL 162
S E VK + L + +G T LH A + +V +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 163 LLASGASPTKANLYGKTP 180
L+ +GAS + + + P
Sbjct: 126 LIENGASVRIKDKFNQIP 143
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 34 TPPHLRDLAAAAQLGDVHSLRLALDN-LSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92
TP H+ A +G++ ++ D L +++ G T LHL + Q L+E
Sbjct: 74 TPFHI-----ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAA 152
GAS+ KD+ IPLH A + G +++++LL K + D +G TPL HA
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG------KSAVNWQDKQGWTPLFHAL 182
Query: 153 RGEHVDVIRLLL 164
H D LL+
Sbjct: 183 AEGHGDAAVLLV 194
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 53/138 (38%), Gaps = 32/138 (23%)
Query: 75 LHLTCLYGYLPCVQLLLERGASLE-AKDEDGAIPLHDACAGGFIEIVQLLIN-------- 125
LH C+ VQ LL SL KD+DG IPLH + + EI L++
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 126 ---------------SASGTECVKRM--------LETVDAEGDTPLHHAARGEHVDVIRL 162
S E VK + L + +G T LH A + +V +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 163 LLASGASPTKANLYGKTP 180
L+ +GAS + + + P
Sbjct: 126 LIENGASVRIKDKFNQIP 143
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146
V++L GA + A D G PLH A G +EIV++L+ + + G T
Sbjct: 30 VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNT-------GRT 82
Query: 147 PLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELP 184
PLH AA +H++++ +LL GA + +GKT ++
Sbjct: 83 PLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G T LHL + G+L V++LL+ GA + A G PLH A +EIV++L+ +
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 131 ECVKRMLET 139
+ +T
Sbjct: 107 NAQDKFGKT 115
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D TP HL AA LG + + + L N ++ G T LHL +L V+
Sbjct: 44 DYWGHTPLHL-----AAMLGHLEIVEVLLKN-GADVNATGNTGRTPLHLAAWADHLEIVE 97
Query: 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
+LL+ GA + A+D+ G + G ++ ++L
Sbjct: 98 VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ G+T LHL Y +L V++LL+ GA +
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
A D DG+ PLH A G +EIV++L+ + + +T
Sbjct: 75 AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146
V++L+ GA + A D G PLH A +EIV++L+ + D +G T
Sbjct: 30 VRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAH-------DNDGST 82
Query: 147 PLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELP 184
PLH AA H++++ +LL GA + +GKT ++
Sbjct: 83 PLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
DG T LHL L+G+L V++LL+ GA + A+D+ G + G ++ ++L
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 129 GTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPEPDT 188
G++ K++LE AAR D +R+L+A+GA + G TP L D
Sbjct: 11 GSDLGKKLLE------------AARAGQDDEVRILMANGADVNANDRKGNTPLHLA-ADY 57
Query: 189 EARRILEV 196
+ I+EV
Sbjct: 58 DHLEIVEV 65
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G + LHL YG+ ++LL G S +A+ + PLH A + G IV++L+ +
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 131 ECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSEL 183
K ML+ T LH A H +V+ LL+ GA + + KT ++
Sbjct: 94 NA-KDMLKM------TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDI 139
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 139 TVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPEPDTEARRILEV 196
T D G +PLH AA+ H +LL +G S +TP + + A I+EV
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA-NIVEV 85
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 9/143 (6%)
Query: 41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
L+ AA GDV +R L D G TAL + ++G LL++GAS +
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQ 70
Query: 101 DEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVI 160
D G P+HDA GF++ +++L+ + D G P+H A + H V+
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNV-------PDGTGALPIHLAVQEGHTAVV 123
Query: 161 RLLLASGASPTKANLYGKTPSEL 183
LA+ + + + G TP EL
Sbjct: 124 S-FLAAESDLHRRDARGLTPLEL 145
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 52 SLRLALDNLSGSIDEPVED--GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLH 109
S +AL+ L V+D G + +H G+L +++L+E GA + D GA+P+H
Sbjct: 53 STAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 112
Query: 110 DACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGAS 169
A G +V L A+ ++ +R DA G TPL A + D++ +L +
Sbjct: 113 LAVQEGHTAVVSFL---AAESDLHRR-----DARGLTPLELALQRGAQDLVDILQGHMVA 164
Query: 170 P 170
P
Sbjct: 165 P 165
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 9/143 (6%)
Query: 41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
L+ AA GDV +R L D G TAL + ++G LL++GAS +
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQ 64
Query: 101 DEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVI 160
D G P+HDA GF++ +++L+ + D G P+H A + H V+
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNV-------PDGTGALPIHLAVQEGHTAVV 117
Query: 161 RLLLASGASPTKANLYGKTPSEL 183
LA+ + + + G TP EL
Sbjct: 118 S-FLAAESDLHRRDARGLTPLEL 139
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 61 SGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIV 120
S + E E D LH G L ++ L+ + D+ G+ L+ AC GG +IV
Sbjct: 63 SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122
Query: 121 QLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGK 178
+ L + L + GDT LH AA + D+++LLLA GA N+ K
Sbjct: 123 EXLFTQPN------IELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK 174
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 12/70 (17%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPL----HDACAGGFIEIVQLLINS 126
GDTALH GY VQLLL +GA + ++ + + + ACA L+
Sbjct: 140 GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACAS--------LLKK 191
Query: 127 ASGTECVKRM 136
GT+ V+ +
Sbjct: 192 KQGTDAVRTL 201
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Query: 36 PHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGA 95
P +LA+AA GD+ L +L + +++ G TAL + L G + LL RGA
Sbjct: 4 PWGNELASAAARGDLEQL-TSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA 61
Query: 96 SLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGE 155
+ + KD G +HDA GF++ +Q L+ + + D EG+ PLH AA+
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNI-------EDNEGNLPLHLAAKEG 114
Query: 156 HVDVIRLLLASGAS 169
H+ V+ L+ AS
Sbjct: 115 HLRVVEFLVKHTAS 128
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G +H G+L +Q LLE A + +D +G +PLH A G + +V+ L+ +
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 131 ECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGA 168
+ + +GDT A +V+ L+ A+GA
Sbjct: 130 VGHR------NHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
D E P HL AA+ G + + + + + ++ GDTA L LYG V
Sbjct: 100 DNEGNLPLHL-----AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 89 LLLERGA 95
L+ GA
Sbjct: 155 LMQANGA 161
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKD-EDGAIPLHDACAGGFIEIVQLLINSAS 128
DG TALH+ VQLLLERGA ++A D + G PL A + +VQLL+
Sbjct: 115 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-- 172
Query: 129 GTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPEPDT 188
G +M G + LH A+ + ++R L+ SGA + N + TP +
Sbjct: 173 GANVNAQMYS-----GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV----A 223
Query: 189 EARRILEV 196
+RR++++
Sbjct: 224 RSRRVIDI 231
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 101 DEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVI 160
DEDG PLH A G + V L+N + R L+ + TPLH A V+
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNL---FQQGGRELDIYNNLRQTPLHLAVITTLPSVV 62
Query: 161 RLLLASGASPTKANLYGKTPSELP---EPDTEARRILEVAASG 200
RLL+ +GASP + +G+T + L T R +L+ AA G
Sbjct: 63 RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPG 105
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 84 LPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAE 143
L VQLLL+ GA++ A+ G+ LH A G + +V+ L+ S + + +
Sbjct: 163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL-------KNCH 215
Query: 144 GDTPLHHAARGEHVDVIR 161
DTPL A +D++R
Sbjct: 216 NDTPLMVARSRRVIDILR 233
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 73 TALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS-GTE 131
T LHL + V+LL+ GAS A D G H AC ++ L++SA+ GT
Sbjct: 48 TPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL 107
Query: 132 CVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGA 168
LE + +G T LH A E + ++LLL GA
Sbjct: 108 D----LEARNYDGLTALHVAVNTECQETVQLLLERGA 140
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Query: 36 PHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGA 95
P +LA+AA GD+ L +L + +++ G TAL + L G + LL RGA
Sbjct: 4 PWGNELASAAARGDLEQL-TSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA 61
Query: 96 SLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGE 155
+ + KD G +HDA GF++ +Q L+ + D EG+ PLH AA+
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI-------EDNEGNLPLHLAAKEG 114
Query: 156 HVDVIRLLLASGAS 169
H+ V+ L+ AS
Sbjct: 115 HLRVVEFLVKHTAS 128
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G +H G+L +Q LLE A + +D +G +PLH A G + +V+ L+ +
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 131 ECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGA 168
+ + +GDT A +V+ L+ A+GA
Sbjct: 130 VGHR------NHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 21 FEEDGVNM-DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTC 79
F+ D VN+ D E P HL AA+ G + + + + + ++ GDTA L
Sbjct: 92 FQAD-VNIEDNEGNLPLHL-----AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
Query: 80 LYGYLPCVQLLLERGA 95
LYG V L+ GA
Sbjct: 146 LYGRNEVVSLMQANGA 161
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Query: 36 PHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGA 95
P +LA+AA GD+ L +L + +++ G TAL + L G + LL RGA
Sbjct: 4 PWGNELASAAARGDLEQL-TSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA 61
Query: 96 SLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGE 155
+ + KD G +HDA GF++ +Q L+ + D EG+ PLH AA+
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI-------EDNEGNLPLHLAAKEG 114
Query: 156 HVDVIRLLLASGAS 169
H+ V+ L+ AS
Sbjct: 115 HLRVVEFLVKHTAS 128
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G +H G+L +Q LLE A + +D +G +PLH A G + +V+ L+ +
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 131 ECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGA 168
+ + +GDT A +V+ L+ A+GA
Sbjct: 130 VGHR------NHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 21 FEEDGVNM-DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTC 79
F+ D VN+ D E P HL AA+ G + + + + + ++ GDTA L
Sbjct: 92 FQAD-VNIEDNEGNLPLHL-----AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
Query: 80 LYGYLPCVQLLLERGA 95
LYG V L+ GA
Sbjct: 146 LYGRNEVVSLMQANGA 161
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Query: 36 PHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGA 95
P +LA+AA GD+ L +L + +++ G TAL + L G + LL RGA
Sbjct: 4 PWGNELASAAARGDLEQL-TSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA 61
Query: 96 SLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGE 155
+ + KD G +HDA GF++ +Q L+ + D EG+ PLH AA+
Sbjct: 62 NPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNI-------EDNEGNLPLHLAAKEG 114
Query: 156 HVDVIRLLLASGAS 169
H+ V+ L+ AS
Sbjct: 115 HLRVVEFLVKHTAS 128
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G+ +H G+L +Q LLE A + +D +G +PLH A G + +V+ L+ +
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 131 ECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGA 168
+ + +GDT A +V+ L+ A+GA
Sbjct: 130 VGHR------NHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 21 FEEDGVNM-DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTC 79
F+ D VN+ D E P HL AA+ G + + + + + ++ GDTA L
Sbjct: 92 FQAD-VNIEDNEGNLPLHL-----AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
Query: 80 LYGYLPCVQLLLERGA 95
LYG V L+ GA
Sbjct: 146 LYGRNEVVSLMQANGA 161
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL-ERGASL 97
RD A+A+L ++ D + E + G TALH P V+ L+ E+G++
Sbjct: 248 RDQVASAKLLVEKGAKVDYDGAARKDSEKYK-GRTALHYAAQVSNXPIVKYLVGEKGSNK 306
Query: 98 EAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECV 133
+ +DEDG P+ A G IE+V LI + E V
Sbjct: 307 DKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAV 342
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 60 LSGSIDEPVEDGDTALHLTCL---YGYLPCVQLLLERGASLEA-----KDED---GAIPL 108
L G I+E +G TAL + + +LL+E+GA ++ KD + G L
Sbjct: 224 LKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL 283
Query: 109 HDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGA 168
H A IV+ L+ + + D +G TP+ AA+ ++V+ L+ GA
Sbjct: 284 HYAAQVSNXPIVKYLVGEKGSNK------DKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337
Query: 169 S 169
S
Sbjct: 338 S 338
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGAS------LEAKDEDGAIPLHDACAGGFIEIVQLLI 124
G+T LHL C G L V +L + + L+A + +G LH A G++ IV+LL+
Sbjct: 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 137
Query: 125 NSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELP 184
+ + + G T LH A ++ D++ LLL GA + G +P +L
Sbjct: 138 SLGADVNAQE------PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 191
Query: 185 --EPDTEARRIL 194
P T ++ L
Sbjct: 192 WGRPSTRIQQQL 203
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 55 LALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAG 114
LA N ++ + T LHL + + LL G E +D G PLH AC
Sbjct: 35 LAFLNFQNNLQQ------TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ 88
Query: 115 GFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGA 168
G + V +L S + T + +L+ + G T LH A+ ++ ++ LL++ GA
Sbjct: 89 GCLASVGVLTQSCT-TPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA 141
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGAS------LEAKDEDGAIPLHDACAGGFIEIVQLLI 124
G+T LHL C G L V +L + + L+A + +G LH A G++ IV+LL+
Sbjct: 75 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 134
Query: 125 NSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELP 184
+ + + G T LH A ++ D++ LLL GA + G +P +L
Sbjct: 135 SLGADVNAQE------PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 188
Query: 185 --EPDTEARRIL 194
P T ++ L
Sbjct: 189 WGRPSTRIQQQL 200
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 55 LALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAG 114
LA N ++ + T LHL + + LL G E +D G PLH AC
Sbjct: 32 LAFLNFQNNLQQ------TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ 85
Query: 115 GFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGA 168
G + V +L S + T + +L+ + G T LH A+ ++ ++ LL++ GA
Sbjct: 86 GCLASVGVLTQSCT-TPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA 138
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 17/161 (10%)
Query: 41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
L A LG +++ ++N D+ +E G TAL L + LL +G+++ K
Sbjct: 39 LMVACMLGMENAIDKLVENFDKLEDKDIE-GSTALIWAVKNNRLGIAEKLLSKGSNVNTK 97
Query: 101 DEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVI 160
D G PL + G+ E+ L+ G R L EG+TPL A++ +++
Sbjct: 98 DFSGKTPLMWSIIFGYSEMSYFLL--EHGANVNDRNL-----EGETPLIVASKYGRSEIV 150
Query: 161 RLLLASGASPTKANLYGKTP---------SELPEPDTEARR 192
+ LL GA + +L G T E+ + TE RR
Sbjct: 151 KKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 46 QLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGA 105
++ D S+ LD L D T L + C+ G + L+E LE KD +G+
Sbjct: 13 KIKDEKSINQNLDFLRNYRDSY---NRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGS 69
Query: 106 IPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLA 165
L A + I + L++ S + T D G TPL + + ++ LL
Sbjct: 70 TALIWAVKNNRLGIAEKLLSKGSN-------VNTKDFSGKTPLMWSIIFGYSEMSYFLLE 122
Query: 166 SGASPTKANLYGKTP 180
GA+ NL G+TP
Sbjct: 123 HGANVNDRNLEGETP 137
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 96 SLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGE 155
LEA++ DG PLH A E+V+LL ++ + + G TPLH A +
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC------GRTPLHLAVEAQ 203
Query: 156 HVDVIRLLLASGASPTKANLYGKTP--SELPEPDTEARRILEV 196
V+ LLL +GA PT G+TP S L P+ R+L
Sbjct: 204 AASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA 246
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 68 VEDGDTALHLTCLYGYLPCVQLLLERGAS---LEAKDEDGAIPLHDACAGGFIEIVQLLI 124
EDGDTALHL ++ + P + LL A L+ +++ G LH A G V+ L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 125 NSASGTECVKRMLETVDAEGDTPLHHAARGE-HVDVIRLLLASGASPTKANLYGKTPSEL 183
+ +G +R G T LH A R H LL + P A+ T S+
Sbjct: 66 AAGAGVLVAERG-------GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD 118
Query: 184 PEPDT 188
PDT
Sbjct: 119 CTPDT 123
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDED-GAIPLHDACAGGFIEIVQLLINSAS 128
DG T LH+ ++ V+LL + GA L + G PLH A +++LL+ +
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK--A 214
Query: 129 GTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGA 168
G + RM G TPL A + + RLL A GA
Sbjct: 215 GADPTARMY-----GGRTPLGSALLRPNPILARLLRAHGA 249
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 96 SLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGE 155
LEA++ DG PLH A E+V+LL ++ + + G TPLH A +
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC------GRTPLHLAVEAQ 203
Query: 156 HVDVIRLLLASGASPTKANLYGKTP--SELPEPDTEARRILEV 196
V+ LLL +GA PT G+TP S L P+ R+L
Sbjct: 204 AASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA 246
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 68 VEDGDTALHLTCLYGYLPCVQLLLERGAS---LEAKDEDGAIPLHDACAGGFIEIVQLLI 124
EDGDTALHL ++ + P + LL A L+ +++ G LH A G V+ L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 125 NSASGTECVKRMLETVDAEGDTPLHHAARGE-HVDVIRLLLASGASPTKANLYGKTPSEL 183
+ +G +R G T LH A R H LL + P A+ T S+
Sbjct: 66 AAGAGVLVAERG-------GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD 118
Query: 184 PEPDT 188
PDT
Sbjct: 119 CTPDT 123
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDED-GAIPLHDACAGGFIEIVQLLINSAS 128
DG T LH+ ++ V+LL + GA L + G PLH A +++LL+ +
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK--A 214
Query: 129 GTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGA 168
G + RM G TPL A + + RLL A GA
Sbjct: 215 GADPTARMY-----GGRTPLGSALLRPNPILARLLRAHGA 249
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 9/134 (6%)
Query: 36 PHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGA 95
P +LA+AA GD+ L +L + +++ G TAL + L G + LL RGA
Sbjct: 4 PWGNELASAAARGDLEQL-TSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA 61
Query: 96 SLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGE 155
+ + KD G +HDA G ++ +Q L+ + D EG+ PLH AA+
Sbjct: 62 NPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNI-------EDNEGNLPLHLAAKEG 114
Query: 156 HVDVIRLLLASGAS 169
H+ V+ L+ AS
Sbjct: 115 HLRVVEFLVKHTAS 128
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G +H G L +Q LLE A + +D +G +PLH A G + +V+ L+ +
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 131 ECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGA 168
+ + +GDT A +V+ L+ A+GA
Sbjct: 130 VGHR------NHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 21 FEEDGVNM-DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTC 79
F+ D VN+ D E P HL AA+ G + + + + + ++ GDTA L
Sbjct: 92 FQAD-VNIEDNEGNLPLHL-----AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
Query: 80 LYGYLPCVQLLLERGA 95
LYG V L+ GA
Sbjct: 146 LYGRNEVVSLMQANGA 161
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 67 PVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINS 126
P ++G TALH G+ V+ L++ G ++ A D DG PLH A + +++ + L+ S
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Query: 127 ASGT 130
+
Sbjct: 126 GAAV 129
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 19/119 (15%)
Query: 51 HSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHD 110
H +R+ + L+ +D +E G VQ ++ +++G LH+
Sbjct: 29 HGMRVKFNPLALLLDSSLE------------GEFDLVQRIIYEVDDPSLPNDEGITALHN 76
Query: 111 ACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGAS 169
A G EIV+ L+ + D++G TPLH AA +V V + L+ SGA+
Sbjct: 77 AVCAGHTEIVKFLVQFGVN-------VNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 67 PVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINS 126
P ++G TALH G+ V+ L++ G ++ A D DG PLH A + +++ + L+ S
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Query: 127 ASGT 130
+
Sbjct: 126 GAAV 129
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 101 DEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVI 160
+++G LH+A G EIV+ L+ + D++G TPLH AA +V V
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVN-------VNAADSDGWTPLHCAASCNNVQVC 119
Query: 161 RLLLASGAS 169
+ L+ SGA+
Sbjct: 120 KFLVESGAA 128
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 141 DAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELP 184
D G TPLH AAR H++V++LLL +GA + +GKT ++
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDIS 79
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
V++L+ GA + AKD++G+ PLH A G +E+V+LL+ + + + +T
Sbjct: 22 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKT 74
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N + ++G T LHL G+L V+LLLE GA +
Sbjct: 8 KKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLL 123
A+D+ G + G ++ ++L
Sbjct: 67 AQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 11/147 (7%)
Query: 60 LSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEI 119
L+ ++D+ G+T+LHL + + LL+ GA ++D G PLH A A + +
Sbjct: 43 LNATMDKT---GETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGV 99
Query: 120 VQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKT 179
Q+L+ + T RM +G TPL AAR ++ L+ + A A+ GKT
Sbjct: 100 FQILLRN-RATNLNARM-----HDGTTPLILAARLAIEGMVEDLITADADINAADNSGKT 153
Query: 180 PSELPEP--DTEARRILEVAASGQTCQ 204
+TEA IL + + + Q
Sbjct: 154 ALHWAAAVNNTEAVNILLMHHANRDAQ 180
Score = 33.5 bits (75), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G TALH V +LL A+ +A+D+ PL A G E + L+++ +
Sbjct: 151 GKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR 210
Query: 131 ECVKRMLETVDAEGDTPLHHAARGEHVDVIRLL 163
E M LHH D++RLL
Sbjct: 211 EITDHMDRLPRDVASERLHH-------DIVRLL 236
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 53 LRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC 112
++ L N + +++ + DG T L L V+ L+ A + A D G LH A
Sbjct: 100 FQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAA 159
Query: 113 AGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAAR 153
A E V +L+ + + D + +TPL AAR
Sbjct: 160 AVNNTEAVNILLMHHANRDA-------QDDKDETPLFLAAR 193
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 61 SGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPL-------HDACA 113
SG++D+ G TALH CL C++LLL AS+E +E G PL H+ C
Sbjct: 195 SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCE 254
Query: 114 GGFIEIVQLLINSASGTECVKRML 137
+ + NS E R+L
Sbjct: 255 ELLTQALSGRFNSHVHVEYEWRLL 278
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 117 IEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLY 176
+ IV L+ ++ L+ +G T LH+ ++ + ++LLL AS AN
Sbjct: 185 LHIVDFLVQNSGN-------LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANES 237
Query: 177 GKTPSELPE 185
G+TP ++ +
Sbjct: 238 GETPLDIAK 246
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 141 DAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSEL 183
D G TPLH AAR H++V++LLL +GA + +GKT ++
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
V++L+ GA + AKD++G+ PLH A G +E+V+LL+ + + + +T
Sbjct: 40 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKT 92
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N + ++G T LHL G+L V+LLLE GA +
Sbjct: 26 KKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLL 123
A+D+ G + G ++ ++L
Sbjct: 85 AQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G+TALHL Y + LLE A +D G PLH A + + Q+LI + T
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN-RAT 83
Query: 131 ECVKRMLETVDAEGDTPLHHAAR 153
+ RM +G TPL AAR
Sbjct: 84 DLDARM-----HDGTTPLILAAR 101
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 140 VDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTP 180
D G+T LH AAR D + LL + A + G+TP
Sbjct: 21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G+TALHL Y + LLE A +D G PLH A + + Q+LI + T
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN-RAT 115
Query: 131 ECVKRMLETVDAEGDTPLHHAAR 153
+ RM +G TPL AAR
Sbjct: 116 DLDARM-----HDGTTPLILAAR 133
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 21/92 (22%)
Query: 103 DGAIPLHDA-CAGGFIE-------------IVQLLINSASGTECVKRMLETVDAEGDTPL 148
DG PL A C+GG +E I + AS + D G+T L
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGAS-------LHNQTDRTGETAL 61
Query: 149 HHAARGEHVDVIRLLLASGASPTKANLYGKTP 180
H AAR D + LL + A + G+TP
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTP 93
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G+TALHL Y + LLE A +D G PLH A + + Q+LI + + T
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA-T 116
Query: 131 ECVKRMLETVDAEGDTPLHHAAR 153
+ RM +G TPL AAR
Sbjct: 117 DLDARM-----HDGTTPLILAAR 134
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 21/101 (20%)
Query: 94 GASLEAKDEDGAIPLHDA-CAGGFIE-------------IVQLLINSASGTECVKRMLET 139
G + + DG PL A C+GG +E I + AS +
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGAS-------LHNQ 53
Query: 140 VDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTP 180
D G+T LH AAR D + LL + A + G+TP
Sbjct: 54 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 94
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
V++L+ GA + AKD+DG PLH A G +EIV++L+ + + + +T
Sbjct: 18 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 70
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 141 DAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELP 184
D +G TPLH AAR H++++ +LL +GA + +GKT ++
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 75
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
+ L AA+ G +R+ + N ++ +DG T LHL G+L V++LL+ GA +
Sbjct: 4 KKLLEAARAGQDDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 99 AKDEDGAIPLHDACAGGFIEIVQLLINSA 127
A+D+ G + G ++ ++L +A
Sbjct: 63 AQDKFGKTAFDISIDNGNEDLAEILQKAA 91
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G TALHL Y + LLE A +D G PLH A + + Q+LI + T
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN-RAT 115
Query: 131 ECVKRMLETVDAEGDTPLHHAAR 153
+ RM +G TPL AAR
Sbjct: 116 DLDARM-----HDGTTPLILAAR 133
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
G+TALHL Y + LLE A +D G PLH A + + Q+L+ + T
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRN-RAT 80
Query: 131 ECVKRMLETVDAEGDTPLHHAAR 153
+ RM +G TPL AAR
Sbjct: 81 DLDARM-----HDGTTPLILAAR 98
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 140 VDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTP 180
D G+T LH AAR D + LL + A + G+TP
Sbjct: 18 TDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTP 58
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 55 LALDNLSGSIDEPVED--GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC 112
+AL+ L V+D G + +H G+L +++L+E GA + A D G++P+H A
Sbjct: 56 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115
Query: 113 AGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPL 148
G +V L + L DA G TPL
Sbjct: 116 REGHSSVVSFLAPESD--------LHHRDASGLTPL 143
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 141 DAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSEL 183
DA G +P+H AAR +D +++L+ GA + G P L
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHL 113
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 55 LALDNLSGSIDEPVED--GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC 112
+AL+ L V+D G + +H G+L +++L+E GA + A D G++P+H A
Sbjct: 58 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117
Query: 113 AGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPL 148
G +V L + L DA G TPL
Sbjct: 118 REGHSSVVSFLAPESD--------LHHRDASGLTPL 145
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 141 DAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSEL 183
DA G +P+H AAR +D +++L+ GA + G P L
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHL 115
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 25/134 (18%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
+G + +HL +G+ V L+ +G ++ D++G P L+ +A
Sbjct: 108 EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP---------------LMWAAYR 152
Query: 130 TECV--KRMLETVDAE---GD-----TPLHHAARGEHVDVIRLLLASGASPTKANLYGKT 179
T V R+L T + GD T LH A + VI LLL +GA+ N+ G++
Sbjct: 153 THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGES 212
Query: 180 PSELPEPDTEARRI 193
+L + I
Sbjct: 213 ALDLAKQRKNVWMI 226
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 64 IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDED-GAIPLHDACAGGFIE-IVQ 121
+ +P ++ T LH + + V+ + +GA ++ D + PLH A G + +VQ
Sbjct: 35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ 94
Query: 122 LLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTP 180
L+ A + +D EG + +H AA+ H ++ L+A G + G TP
Sbjct: 95 LMKYGADPS--------LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP 145
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
L AA D ++ L + + +DE +G+T L++ + + L++RGA + +
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 101 DEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVI 160
+ P A A G EI+ ++ A+ L + G L AA H+D +
Sbjct: 69 NSISDSPYLYAGAQGRTEILAYMLKHATPD------LNKHNRYGGNALIPAAEKGHIDNV 122
Query: 161 RLLLASG 167
+LLL G
Sbjct: 123 KLLLEDG 129
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTAL--HLTCLYG---YLPCVQLLLERGA 95
L AA+ G + +++L L++ ID + G TAL + G Y V+LL+E GA
Sbjct: 110 LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169
Query: 96 SLEAKDEDGAIPLHDACAGGFIEIVQLL 123
KD G + A G+ EI ++L
Sbjct: 170 DQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 130 TECVKRMLE-------TVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTP 180
T+ VK +L+ VD EG+TPL+ A +++ + L+ GA N +P
Sbjct: 18 TKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSP 75
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG- 129
G TALHL C +G + + L G G P+H A ++V L+ A
Sbjct: 53 GCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVXANKTDLVVALVEGAKER 110
Query: 130 --------TECVKRMLETVDA-----EGDTPLHHAAR--GEHVDVIRLLLASGASPTKAN 174
EC +R + + + +G T LH E+++ I++L+ GASPT +
Sbjct: 111 GQXPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKD 170
Query: 175 LYGKTP 180
+TP
Sbjct: 171 KADETP 176
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 71 GDTALHLTCLYG--YLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
G TALH G YL +++L++ GAS AKD+ PL A E + L ++
Sbjct: 138 GQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVP 197
Query: 129 GTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASG 167
++ L+ + +G++ LH A DV + G
Sbjct: 198 SKSSLR--LDYANKQGNSHLHWAILINWEDVAXRFVEXG 234
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 141 DAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKT 179
D E +H AAR D +R L+ +G SPT N +G T
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCT 55
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 16/130 (12%)
Query: 75 LHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVK 134
+H+ G V+ L+E G S ++ G LH AC G ++ + L AS E V
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL---ASVGE-VH 79
Query: 135 RMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPEPDTEARRIL 194
+ G P+H A D++ + L GA G+ P L + + R +
Sbjct: 80 SLW-----HGQKPIHLAVXANKTDLV-VALVEGAKER-----GQXPESLLN-ECDEREVN 127
Query: 195 EVAASGQTCQ 204
E+ + + C+
Sbjct: 128 EIGSHVKHCK 137
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 12/115 (10%)
Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINS-A 127
E G T LH V+LLL GA + ++GA P A G +++++L ++ A
Sbjct: 57 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGA 116
Query: 128 SGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSE 182
EC D G T AA V ++ L GA+ NL KT +
Sbjct: 117 DVNEC--------DFYGFTAFMEAAVYGKVKALKFLYKRGAN---VNLRRKTKED 160
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 18/157 (11%)
Query: 25 GVNMDLESETPP---HLRD-----LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALH 76
G N++L +T LR L AA+ G V L++ LD + ++ G AL
Sbjct: 148 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 207
Query: 77 LTCLYG----YLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTEC 132
L LLL+ GA + + E G PL A + +VQ L+ E
Sbjct: 208 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ----EH 263
Query: 133 VKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGAS 169
++ + D++G T L A + + LL GAS
Sbjct: 264 IE--INDTDSDGKTALLLAVELKLKKIAELLCKRGAS 298
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%)
Query: 62 GSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQ 121
G +D DG+TALH LY C++LLL+ A + +E G L A E +
Sbjct: 198 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE 257
Query: 122 LLINSASGT 130
LL + +GT
Sbjct: 258 LLEQAQAGT 266
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 84 LPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAE 143
LP V +++ G L+AK DG LH A + ++LL+ + ++ TV+
Sbjct: 187 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG-------RALVGTVNEA 239
Query: 144 GDTPLHHAARGEHVDVIRLL 163
G+T L A + H + LL
Sbjct: 240 GETALDIARKKHHKECEELL 259
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 137 LETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPEPD--TEARRIL 194
L+ A+G+T LH+AA D ++LLL A N G+T ++ E +L
Sbjct: 200 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
Query: 195 EVAASG 200
E A +G
Sbjct: 260 EQAQAG 265
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 133 VKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSEL 183
+ ML D+ GDT L+ AAR ++ ++ LL GA P AN G P +
Sbjct: 272 IANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDF 322
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 31 ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLL 90
E ETP AA+ D +L L++ +D E+G TAL G CV+LL
Sbjct: 44 EYETP-----WWTAARKADEQALSQLLEDRD--VDAVDENGRTALLFVAGLGSDKCVRLL 96
Query: 91 LERGASLEAKDEDGAI-PLHDACAGGFI--EIVQLLINSASGTEC 132
E GA L+ +D G + LH A G++ E+V+ L+ + E
Sbjct: 97 AEAGADLDHRDMRGGLTALH--MAAGYVRPEVVEALVELGADIEV 139
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPL 108
G TALH+ Y V+ L+E GA +E +DE G L
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 148
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%)
Query: 62 GSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQ 121
G +D DG+TALH LY C++LLL+ A + +E G L A E +
Sbjct: 217 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE 276
Query: 122 LLINSASGT 130
LL + +GT
Sbjct: 277 LLEQAQAGT 285
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 84 LPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAE 143
LP V +++ G L+AK DG LH A + ++LL+ + ++ TV+
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG-------RALVGTVNEA 258
Query: 144 GDTPLHHAARGEHVDVIRLL 163
G+T L A + H + LL
Sbjct: 259 GETALDIARKKHHKECEELL 278
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 137 LETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPEPD--TEARRIL 194
L+ A+G+T LH+AA D ++LLL A N G+T ++ E +L
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Query: 195 EVAASG 200
E A +G
Sbjct: 279 EQAQAG 284
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 12/115 (10%)
Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINS-A 127
E G T LH V+LLL GA + ++GA P A G +++++L ++ A
Sbjct: 37 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96
Query: 128 SGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSE 182
EC D G T AA V ++ L GA+ NL KT +
Sbjct: 97 DVNEC--------DFYGFTAFMEAAVYGKVKALKFLYKRGAN---VNLRRKTKED 140
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 18/158 (11%)
Query: 25 GVNMDLESETPP---HLRD-----LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALH 76
G N++L +T LR L AA+ G V L++ LD + ++ G AL
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 187
Query: 77 LTCLYG----YLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTEC 132
L LLL+ GA + + E G PL A + +VQ L+ E
Sbjct: 188 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ----EH 243
Query: 133 VKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASP 170
++ + D++G T L A + + LL GAS
Sbjct: 244 IE--INDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 31 ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLL 90
E ETP AA+ D +L L++ +D E+G TAL G CV+LL
Sbjct: 43 EYETP-----WWTAARKADEQALSQLLEDRD--VDAVDENGRTALLFVAGLGSDKCVRLL 95
Query: 91 LERGASLEAKDEDGAI-PLHDACAGGFI--EIVQLLINSASGTEC 132
E GA L+ +D G + LH A G++ E+V+ L+ + E
Sbjct: 96 AEAGADLDHRDMRGGLTALH--MAAGYVRPEVVEALVELGADIEV 138
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPL 108
G TALH+ Y V+ L+E GA +E +DE G L
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 147
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93
+P L LA D+ ++ L L L + + G TAL L +G + V+ LL
Sbjct: 147 SPIMLTALATLKTQDDIETV-LQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLAC 205
Query: 94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
A + +D+DG+ L AC G EI LL+
Sbjct: 206 EADVNVQDDDGSTALMCACEHGHKEIAGLLL 236
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 21/109 (19%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGA-SLEAKDEDGAIPLHDACAGGF-----IEIVQLL 123
+G+TALH + + P VQ LL+ G ++ ++ G P+ IE V L
Sbjct: 110 NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQL 169
Query: 124 INSASGTECVKRMLETVDAE----GDTPLHHAARGEHVDVIRLLLASGA 168
L ++A+ G T L A VDV++ LLA A
Sbjct: 170 FR-----------LGNINAKASQAGQTALMLAVSHGRVDVVKALLACEA 207
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 80 LYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
L G L VQ ++ +E+G LH+A G IV LI + + + +
Sbjct: 30 LTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN-------VNS 82
Query: 140 VDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLY-GKTPSELPEPDTE 189
D+ G TPLH AA + L+ GA+ L G T E +P E
Sbjct: 83 PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE 133
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 44 AAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDED 103
AA G++ ++ A+ ++ +P E+G TALH V L+ GA++ + D
Sbjct: 28 AALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSH 86
Query: 104 GAIPLHDA 111
G PLH A
Sbjct: 87 GWTPLHCA 94
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 108 LHDACAGGFIEIVQLLINSASGTECVKRMLETV--DAEGDTPLHHAARGEHVDVIRLLLA 165
L DA G +E+VQ + VK M + + EG T LH+A G + ++ L+
Sbjct: 25 LLDAALTGELEVVQ---------QAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLIT 75
Query: 166 SGASPTKANLYGKTP 180
+GA+ + +G TP
Sbjct: 76 AGANVNSPDSHGWTP 90
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 64 IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
++ +E G LH G L ++ LL +GA + A D+ PL A G + V+LL
Sbjct: 33 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 92
Query: 124 INSAS 128
++ +
Sbjct: 93 LSKGA 97
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146
V+ + +G + E G PLH A G +EI++ L+ + + D T
Sbjct: 23 VKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-------INAPDKHHIT 75
Query: 147 PLHHAARGEHVDVIRLLLASGASPT 171
PL A HV ++LLL+ GA T
Sbjct: 76 PLLSAVYEGHVSCVKLLLSKGADKT 100
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 11/105 (10%)
Query: 1 MAVPRNGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNL 60
M +NG ++E +D ED VN LE P L AA G + L L L
Sbjct: 12 MWALKNGDLDE---VKDYVAKGED-VNRTLEGGRKP----LHYAADCGQLEILEFLL--L 61
Query: 61 SGS-IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDG 104
G+ I+ P + T L G++ CV+LLL +GA K DG
Sbjct: 62 KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 64 IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
++ +E G LH G L ++ LL +GA + A D+ PL A G + V+LL
Sbjct: 28 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 87
Query: 124 INSAS 128
++ +
Sbjct: 88 LSKGA 92
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146
V+ + +G + E G PLH A G +EI++ L+ + + D T
Sbjct: 18 VKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-------INAPDKHHIT 70
Query: 147 PLHHAARGEHVDVIRLLLASGASPT 171
PL A HV ++LLL+ GA T
Sbjct: 71 PLLSAVYEGHVSCVKLLLSKGADKT 95
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 1 MAVPRNGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNL 60
M +NG ++E +D ED VN LE P L AA G + L L L
Sbjct: 7 MWALKNGDLDE---VKDYVAKGED-VNRTLEGGRKP----LHYAADCGQLEILEFLL--L 56
Query: 61 SGS-IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPL 108
G+ I+ P + T L G++ CV+LLL +GA K DG L
Sbjct: 57 KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 59/142 (41%), Gaps = 12/142 (8%)
Query: 61 SGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIV 120
+GS EP D L G + V+ LLE GA+ A + G P+ G +
Sbjct: 5 AGSSMEPSADW---LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQ-VMMMGSARVA 60
Query: 121 QLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTP 180
+LL+ + C T P+H AAR +D + +L +GA + +G+ P
Sbjct: 61 ELLLLHGAEPNCADPATLT------RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP 114
Query: 181 SELPEP--DTEARRILEVAASG 200
+L E + R L AA G
Sbjct: 115 VDLAEELGHRDVARYLRAAAGG 136
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 72 DTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTE 131
D L G + V+ LLE GA A + G P+ G ++ +LL+ +
Sbjct: 13 DAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGS-AQVAELLLLHGAEPN 71
Query: 132 CVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPE 185
C T P+H AAR +D + +L +GA + +G+ P +L E
Sbjct: 72 CADPATLT------RPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE 119
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 88 QLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTP 147
+LL G + + G LH A +E +L+ +A E V + + EG T
Sbjct: 21 KLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP--ELVFEPMTSELYEGQTA 78
Query: 148 LHHAARGEHVDVIRLLLASGAS 169
LH A ++V+++R LLA GAS
Sbjct: 79 LHIAVINQNVNLVRALLARGAS 100
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASL--- 97
L AA+ DV +L L + + G+TALH+ LY L +L+E L
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66
Query: 98 --EAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVD--------AEGDTP 147
++ +G LH A + +V+ L+ A G R +V G+ P
Sbjct: 67 PMTSELYEGQTALHIAVINQNVNLVRALL--ARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 148 LHHAARGEHVDVIRLLLASGASPTKANLYGKT 179
L AA +++RLL+ GA + G T
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNT 156
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 63 SIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQL 122
++++ G LH + G+ L L+RGA L A+D +G PL A +IV L
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319
Query: 123 L 123
L
Sbjct: 320 L 320
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 52/133 (39%), Gaps = 20/133 (15%)
Query: 32 SETPPHLRDLA-AAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLL 90
S PP L +A A A DV+ + DN + I T L C + L
Sbjct: 207 SGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQA-----------TAANSLLAC-EFL 254
Query: 91 LERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHH 150
L+ GA++ D G PLH A G + L + + L D+EG PL
Sbjct: 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD-------LGARDSEGRDPLTI 307
Query: 151 AARGEHVDVIRLL 163
A + D++ LL
Sbjct: 308 AMETANADIVTLL 320
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 84 LPCVQLLLERGASLEAKD--EDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVD 141
LP + L GA + + +D A PL A A + + L+ + + + D
Sbjct: 213 LPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-------VNQAD 265
Query: 142 AEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTP 180
+ G PLHHA H + L L GA + G+ P
Sbjct: 266 SAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDP 304
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 58/142 (40%), Gaps = 12/142 (8%)
Query: 61 SGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIV 120
+GS EP D L G + V+ LLE GA A + G P+ G +
Sbjct: 5 AGSSMEPSADW---LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQ-VMMMGSARVA 60
Query: 121 QLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTP 180
+LL+ + C T P+H AAR +D + +L +GA + +G+ P
Sbjct: 61 ELLLLHGAEPNCADPATLT------RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP 114
Query: 181 SELPEP--DTEARRILEVAASG 200
+L E + R L AA G
Sbjct: 115 VDLAEELGHRDVARYLRAAAGG 136
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 63 SIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQL 122
++++ G LH + G+ L L+RGA L A+D +G PL A +IV L
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319
Query: 123 L 123
L
Sbjct: 320 L 320
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 64/164 (39%), Gaps = 25/164 (15%)
Query: 4 PRNGMME---EDDSEEDNALFEEDGVNMDLESETPPHLRDLA-AAAQLGDVHSLRLALDN 59
PR G + E SE+ +L G + S PP L +A A A DV+ + DN
Sbjct: 178 PRPGSLRSKPEPPSEDLGSL--HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDN 235
Query: 60 LSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEI 119
+ I T L C + LL+ GA++ D G PLH A G +
Sbjct: 236 ATPLIQA-----------TAANSLLAC-EFLLQNGANVNQADSAGRGPLHHATILGHTGL 283
Query: 120 VQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLL 163
L + + L D+EG PL A + D++ LL
Sbjct: 284 ACLFLKRGAD-------LGARDSEGRDPLTIAMETANADIVTLL 320
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 84 LPCVQLLLERGASLEAKD--EDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVD 141
LP + L GA + + +D A PL A A + + L+ + + + D
Sbjct: 213 LPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-------VNQAD 265
Query: 142 AEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTP 180
+ G PLHHA H + L L GA + G+ P
Sbjct: 266 SAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDP 304
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 63 SIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQL 122
++++ G LH + G+ L L+RGA L A+D +G PL A +IV L
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319
Query: 123 L 123
L
Sbjct: 320 L 320
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 52/133 (39%), Gaps = 20/133 (15%)
Query: 32 SETPPHLRDLA-AAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLL 90
S PP L +A A A DV+ + DN + I T L C + L
Sbjct: 207 SGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQA-----------TAANSLLAC-EFL 254
Query: 91 LERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHH 150
L+ GA++ D G PLH A G + L + + L D+EG PL
Sbjct: 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD-------LGARDSEGRDPLTI 307
Query: 151 AARGEHVDVIRLL 163
A + D++ LL
Sbjct: 308 AMETANADIVTLL 320
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 84 LPCVQLLLERGASLEAKD--EDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVD 141
LP + L GA + + +D A PL A A + + L+ + + + D
Sbjct: 213 LPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-------VNQAD 265
Query: 142 AEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTP 180
+ G PLHHA H + L L GA + G+ P
Sbjct: 266 SAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDP 304
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 71 GDTALHLTCLYGYLPCVQLLLERGASLEAKD-------------EDGAIPLHDACAGGFI 117
G +ALH+ L CV+LL+E GA++ A+ G +PL A
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQW 154
Query: 118 EIVQLLINSASGTECVKRMLETVDAEGDTPLH 149
++V L+ + L+ D++G+T LH
Sbjct: 155 DVVSYLLENPHQPA----SLQATDSQGNTVLH 182
>pdb|1W4T|A Chain A, X-Ray Crystallographic Structure Of Pseudomonas
Aeruginosa Arylamine N-Acetyltransferase
Length = 299
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 3 VPRNGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSG 62
VPR M E+ +A G++ PP L +L +L D H R+A +NL
Sbjct: 15 VPRGSHMTPLTPEQTHAYLHHIGID----DPGPPSLANLD---RLIDAHLRRVAFENLDV 67
Query: 63 SIDEPVE-DGDTAL 75
+D P+E D D
Sbjct: 68 LLDRPIEIDADKVF 81
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
G +ALH+ L CV+LL+E GA + + H F E+ L
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 161
Query: 130 TECVKRMLET---------VDAEGDTPLH 149
+ V +LE D+ G+T LH
Sbjct: 162 WDVVTYLLENPHQPASLEATDSLGNTVLH 190
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
G +ALH+ L CV+LL+E GA + + H F E+ L
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 130 TECVKRMLET---------VDAEGDTPLH 149
+ V +LE D+ G+T LH
Sbjct: 149 WDVVTYLLENPHQPASLEATDSLGNTVLH 177
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 143 EGDTPLHHAARGEHVDVIRLLLASG 167
E + PLH AA E ++++LL SG
Sbjct: 61 ENEFPLHQAATLEDTKIVKILLFSG 85
>pdb|1YQ2|A Chain A, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|B Chain B, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|C Chain C, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|D Chain D, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|E Chain E, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|F Chain F, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
Length = 1024
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 5 RNGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLG 48
R + +E + ED AL + VN S PPH R L A ++G
Sbjct: 342 RGRVFDEAGAREDLALMKRFNVNAIRTSHYPPHPRLLDLADEMG 385
>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QI6|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
Length = 392
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 30 LESETPPHLR--DLAAAAQLGDVHSLRLALDNLSGS--IDEPVEDG-DTALHLTCLY 81
+E+ T P L D+A AQLG S ++ +DN S + +P+ G D LH T Y
Sbjct: 157 VETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTXY 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,460,954
Number of Sequences: 62578
Number of extensions: 263440
Number of successful extensions: 1060
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 346
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)