Query 028733
Match_columns 204
No_of_seqs 117 out of 2524
Neff 10.6
Searched_HMMs 29240
Date Tue Mar 26 18:31:37 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028733.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2224-2228//hhsearch_pdb/028733hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_B Ankyrin repeat domain-c 1.0 1 1 186.7 16.7 171 15-195 66-236 (269)
2 4gpm_A Engineered protein OR26 1.0 1 1 181.2 17.1 157 39-203 6-162 (169)
3 1oy3_D Transcription factor in 1.0 1 1 177.8 17.2 182 13-202 20-250 (282)
4 1yyh_A HN1;, notch 1, ankyrin 1.0 1 1 175.9 15.2 176 15-199 70-245 (253)
5 1yyh_A HN1;, notch 1, ankyrin 1.0 1 1 175.1 17.7 182 12-202 33-215 (253)
6 3kea_A K1L; tropism, ANK repea 1.0 1 1 174.2 11.3 176 14-203 43-221 (285)
7 1n11_A Ankyrin; clathrin, BAND 1.0 1 1 173.5 18.7 144 37-188 245-388 (437)
8 3ljn_A Hypothetical protein; a 1.0 1 1 173.3 16.9 182 14-200 32-267 (364)
9 1n11_A Ankyrin; clathrin, BAND 1.0 1 1 172.8 18.7 158 36-201 211-368 (437)
10 3aji_A 26S proteasome non-ATPa 1.0 1 1 171.8 18.5 177 15-201 53-229 (231)
No 1
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=186.67 Aligned_cols=171 Identities=29% Similarity=0.430 Sum_probs=157.9
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 77789998607888889999965679999996299899999997389999988878893999999709967999999829
Q 028733 15 EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG 94 (204)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~v~~Ll~~~ 94 (204)
......+.+.|++++. .+..|.+|||+|+..|+.+.+++|+.. +.+++..+..|.||+++|+..++.+++++|++.|
T Consensus 66 ~~~v~~Ll~~Gadvn~--~d~~G~TpLh~A~~~g~~~~v~~Ll~~-~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g 142 (269)
T 4b93_B 66 QKRLAKVPASGLGVNV--TSQDGSSPLHVAALHGRADLIPLLLKH-GANAGARNADQAVPLHLACQQGHFQVVKCLLDSN 142 (269)
T ss_dssp ---------CCCCTTC--CCTTSCCHHHHHHHTTCTTHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 9999999987999887--699999999999984969999999865-9986755789998330000127299999999879
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 99763468998599999962959999999860687078988653157899708879982599999999998499997678
Q 028733 95 ASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKAN 174 (204)
Q Consensus 95 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~ 174 (204)
++++.++..|.||||+|+..++.+++++|++.|++ ++..+..|.||||+|+..|+.+++++|+++|++++.++
T Consensus 143 ~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad-------vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d 215 (269)
T 4b93_B 143 AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS-------INASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLN 215 (269)
T ss_dssp CCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC-------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf 99887789999999999987899999999978799-------78321478838999998688999999998788998869
Q ss_pred CCCCCCCCCCCCCHHHHHHHH
Q ss_conf 899996325789801899999
Q 028733 175 LYGKTPSELPEPDTEARRILE 195 (204)
Q Consensus 175 ~~g~tpl~~a~~~~~~~~~~~ 195 (204)
..|.||||+|+.++++..++.
T Consensus 216 ~~G~TpL~~A~~~~~i~~lL~ 236 (269)
T 4b93_B 216 KRQRTAVDCAEQNSKIMELLQ 236 (269)
T ss_dssp TTSCCSGGGSCTTCHHHHHTT
T ss_pred CCCCCHHHHHHHCCCHHHHHH
T ss_conf 999999999883784999999
No 2
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=1.00 E-value=1 Score=181.22 Aligned_cols=157 Identities=32% Similarity=0.550 Sum_probs=150.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
Q ss_conf 79999996299899999997389999988878893999999709967999999829997634689985999999629599
Q 028733 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIE 118 (204)
Q Consensus 39 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~ 118 (204)
..|+.|++.|+.+.++.|+++ |++++.+|..|.||+++|+..++.+++++|++.|++++.++..|.||||+|+..++.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIEN-GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHCCCHH
T ss_conf 999999995899999999987-8998884999898999999849999999998315311330357999999999939799
Q ss_pred HHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999860687078988653157899708879982599999999998499997678899996325789801899999983
Q 028733 119 IVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPEPDTEARRILEVAA 198 (204)
Q Consensus 119 ~~~~ll~~~~~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~ 198 (204)
++++|++.|++ ++..+..|.||||+|+..++.+++++|+++|++++..+..|.|||++|+..++.+.+..|+.
T Consensus 85 ~v~~Ll~~gad-------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~ 157 (169)
T 4gpm_A 85 VVKLLISKGAD-------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157 (169)
T ss_dssp HHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHCCCC-------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 99999987699-------99879999989999998598999999998699741569999999999998689999999998
Q ss_pred CCCCC
Q ss_conf 07778
Q 028733 199 SGQTC 203 (204)
Q Consensus 199 ~~~~~ 203 (204)
.|+.-
T Consensus 158 ~GA~i 162 (169)
T 4gpm_A 158 QGGWL 162 (169)
T ss_dssp C----
T ss_pred CCCCC
T ss_conf 79990
No 3
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=1.00 E-value=1 Score=177.83 Aligned_cols=182 Identities=28% Similarity=0.342 Sum_probs=162.0
Q ss_pred CCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Q ss_conf 95777899986078888-89999965679999996299899999997389999988878893999999709967999999
Q 028733 13 DSEEDNALFEEDGVNMD-LESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL 91 (204)
Q Consensus 13 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~v~~Ll 91 (204)
...+.++.+.+.+.+.+ ....+..+.+|||+|+..|+.+.+++|+++ |.+++..+..|.||||+|+..++.+++++|+
T Consensus 20 g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 98 (282)
T 1oy3_D 20 QHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGHTALHLACRVRAHTCACVLL 98 (282)
T ss_dssp TCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTSCCHHHHHTTTTCHHHHHHHS
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCCCHHHHHH
T ss_conf 878899999854777431006478898799999986999999999986-9998877989999999998738840557642
Q ss_pred HCCCC-----------------------------------------------CCCCCCCCCCHHHHHHHCCCHHHHHHHH
Q ss_conf 82999-----------------------------------------------7634689985999999629599999998
Q 028733 92 ERGAS-----------------------------------------------LEAKDEDGAIPLHDACAGGFIEIVQLLI 124 (204)
Q Consensus 92 ~~~~~-----------------------------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~ll 124 (204)
..+++ ++..+..|.||||.|+..++.+++++|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 178 (282)
T 1oy3_D 99 QPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR 178 (282)
T ss_dssp SSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHCCCCCCCCHHCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
T ss_conf 34777722467777523434585011002220135653000002335554057776789968999999749999999999
Q ss_pred HHCCCHHHHHHHHHCCCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 606870789886531578-997088799825999999999984999976788999963257898018999999830777
Q 028733 125 NSASGTECVKRMLETVDA-EGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPEPDTEARRILEVAASGQT 202 (204)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~-~~~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~ 202 (204)
+.+++ ++..+. .|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..+..+.+..|+..|+.
T Consensus 179 ~~g~~-------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 250 (282)
T 1oy3_D 179 DAGAD-------LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250 (282)
T ss_dssp HHTCC-------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred HCCCC-------CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCC
T ss_conf 83898-------7888877896899999883989999999975999866446999789999984991799999984998
No 4
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=1.00 E-value=1 Score=175.89 Aligned_cols=176 Identities=18% Similarity=0.227 Sum_probs=102.9
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 77789998607888889999965679999996299899999997389999988878893999999709967999999829
Q 028733 15 EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG 94 (204)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~v~~Ll~~~ 94 (204)
.+.++.+.+.|.+++. .+..+.+||++|+..|+.+.+++|++....+++..+..|.||||+|+..++.+++++|++.|
T Consensus 70 ~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 147 (253)
T 1yyh_A 70 SDAAKRLLEASADANI--QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 147 (253)
T ss_dssp HHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCC
T ss_conf 9999999975999788--79999989999998698899999997589875456889986999998848399999999769
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 99763468998599999962959999999860687078988653157899708879982599999999998499997678
Q 028733 95 ASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKAN 174 (204)
Q Consensus 95 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~ 174 (204)
++++..+..|.||||+|+..++.+++++|++.|++ ++..+..|.||||+|+..++.+++++|+++|++++..+
T Consensus 148 ~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d 220 (253)
T 1yyh_A 148 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-------KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220 (253)
T ss_dssp CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf 99888099999899999986888999999976999-------99868999999999998799999999998699933002
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 8999963257898018999999830
Q 028733 175 LYGKTPSELPEPDTEARRILEVAAS 199 (204)
Q Consensus 175 ~~g~tpl~~a~~~~~~~~~~~~~~~ 199 (204)
..|.||+++|+..+..+++.++...
T Consensus 221 ~~g~tpl~~A~~~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 221 HMDRLPRDIAQERMHHDIVRLLDLE 245 (253)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHH
T ss_conf 4899889999885878999999988
No 5
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=1.00 E-value=1 Score=175.08 Aligned_cols=182 Identities=24% Similarity=0.232 Sum_probs=167.1
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Q ss_conf 99577789998607888889999965679999996299899999997389999988878893999999709967999999
Q 028733 12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL 91 (204)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~v~~Ll 91 (204)
....+..+.+.+.|.+++. ..+..+.+||++|+..|+.+.+++|++. |.+++..+..|.||||+|+..++.+++++|+
T Consensus 33 ~~~~~~v~~Ll~~g~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 110 (253)
T 1yyh_A 33 EDAPAVISDFIYQGASLHN-QTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILI 110 (253)
T ss_dssp --------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
T ss_conf 7975999999973687345-6289998499999986999999999975-9997887999998999999869889999999
Q ss_pred HCCC-CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 8299-976346899859999996295999999986068707898865315789970887998259999999999849999
Q 028733 92 ERGA-SLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASP 170 (204)
Q Consensus 92 ~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~Ll~~g~~~ 170 (204)
+.+. +++..+..|.||||.|+..++.+++++|++.+++ ++..+..|.||||+|+..++.+++++|+++|+++
T Consensus 111 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 183 (253)
T 1yyh_A 111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-------VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 183 (253)
T ss_dssp HSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred HCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCC-------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf 758987545688998699999884839999999976999-------8880999998999999868889999999769999
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 76788999963257898018999999830777
Q 028733 171 TKANLYGKTPSELPEPDTEARRILEVAASGQT 202 (204)
Q Consensus 171 ~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~ 202 (204)
+..+..|.||||+|+..++.+.+..++..++.
T Consensus 184 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 215 (253)
T 1yyh_A 184 DMQNNREETPLFLAAREGSYETAKVLLDHFAN 215 (253)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 98689999999999987999999999986999
No 6
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=1.00 E-value=1 Score=174.16 Aligned_cols=176 Identities=19% Similarity=0.149 Sum_probs=127.1
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC
Q ss_conf 57778999860788888999996567999999629989999999738999998887889399999970996799999982
Q 028733 14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93 (204)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~v~~Ll~~ 93 (204)
..+.++.+.+.|++++.. .+.+|||+|+..|+.+.+++|++. |.+++.++..|.||||+|+..|+.+++++|++.
T Consensus 43 ~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 117 (285)
T 3kea_A 43 NVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFS-GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK 117 (285)
T ss_dssp CHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCC----CCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC
T ss_conf 999999999688898878----998889999986999999999978-899888599989699999982999999999966
Q ss_pred CCCCCCCCCCC-CCHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf 99976346899-85999999629599999998606870789886531578-99708879982599999999998499997
Q 028733 94 GASLEAKDEDG-AIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDA-EGDTPLHHAARGEHVDVIRLLLASGASPT 171 (204)
Q Consensus 94 ~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~-~~~tpl~~a~~~~~~~~~~~Ll~~g~~~~ 171 (204)
|++++..+..| .||+|.|+..++.+++++|++.++.. .+. .|.||||.|+..++.+++++|+++|++++
T Consensus 118 ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n 188 (285)
T 3kea_A 118 NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---------FDLAILLSCIHITIKNGHVDMMILLLDYMTSTN 188 (285)
T ss_dssp CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---------CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC---------CCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCC
T ss_conf 99977557889878999999829999999998579964---------456578639999998591999999997699988
Q ss_pred CCCCCCCCC-CCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 678899996-32578980189999998307778
Q 028733 172 KANLYGKTP-SELPEPDTEARRILEVAASGQTC 203 (204)
Q Consensus 172 ~~~~~g~tp-l~~a~~~~~~~~~~~~~~~~~~~ 203 (204)
..+..|.|| ||+|+..+..+.+..++..|+..
T Consensus 189 ~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~ 221 (285)
T 3kea_A 189 TNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI 221 (285)
T ss_dssp TTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCS
T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf 666799985999999849999999999869998
No 7
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=173.51 Aligned_cols=144 Identities=31% Similarity=0.453 Sum_probs=59.9
Q ss_pred CHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 56799999962998999999973899999888788939999997099679999998299976346899859999996295
Q 028733 37 HLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGF 116 (204)
Q Consensus 37 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~ 116 (204)
+.+||+.|+..|+.+.+++|+++ +.+++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..++
T Consensus 245 g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 323 (437)
T 1n11_A 245 GVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN 323 (437)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSC
T ss_pred CCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 99799999977889999999966-99999879999979999998499999999984875678879999889999998694
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 999999986068707898865315789970887998259999999999849999767889999632578980
Q 028733 117 IEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPEPDT 188 (204)
Q Consensus 117 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~tpl~~a~~~~ 188 (204)
.+++++|++.+++ ++..+..|.||||+|+..++.+++++|+++|++++..+..|.||+++|+..+
T Consensus 324 ~~~v~~Ll~~gad-------~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g 388 (437)
T 1n11_A 324 IKLVKFLLQHQAD-------VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388 (437)
T ss_dssp SHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTT
T ss_pred HHHHHHHHHCCCC-------CCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 9999999966999-------9988999988999999878199999999776899887899898999998849
No 8
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=1.00 E-value=1 Score=173.30 Aligned_cols=182 Identities=21% Similarity=0.232 Sum_probs=116.6
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCC---------------------------
Q ss_conf 57778999860788888999996567999999629989999999738999998---------------------------
Q 028733 14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDE--------------------------- 66 (204)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~--------------------------- 66 (204)
..+.++.+.+.|++++. .+..+.+||++|+..|+.+.+++|++. +.+++.
T Consensus 32 ~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 108 (364)
T 3ljn_A 32 QTDEVRRLIETGVSPTI--QNRFGCTALHLACKFGCVDTAKYLASV-GEVHSLWHGQKPIHLAVMANKTDLVVALVEGAK 108 (364)
T ss_dssp CHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHHCCHHHHHHHHHH-CCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 99999999986989422--489999699999985989999999977-997545689988999988699889999997133
Q ss_pred -------------------------CCCCCCCHHHHHHHCC--CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHH
Q ss_conf -------------------------8878893999999709--9679999998299976346899859999996295999
Q 028733 67 -------------------------PVEDGDTALHLTCLYG--YLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEI 119 (204)
Q Consensus 67 -------------------------~d~~g~t~l~~a~~~~--~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~ 119 (204)
.+..|.||||+|+..| +.+++++|++.|++++..+..|.||||+|+..++.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~ 188 (364)
T 3ljn_A 109 ERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREA 188 (364)
T ss_dssp HHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred CCCCCHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHH
T ss_conf 35877788986302676654035667988987899999749966999999997699973628899989999998298999
Q ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 99998606870789886531578997088799825999999999984999976788999963257898018999999830
Q 028733 120 VQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPEPDTEARRILEVAAS 199 (204)
Q Consensus 120 ~~~ll~~~~~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~ 199 (204)
+++|++.+++..... ++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..+..+.+..|+..
T Consensus 189 v~~Ll~~g~~~~~~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 189 LDLMMDTVPSKSSLR--LDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHHHHCSCSSSCC--TTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCC--CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHC
T ss_conf 999986055412355--523288998099999975988999999986999888799999889999983829999999974
Q ss_pred C
Q ss_conf 7
Q 028733 200 G 200 (204)
Q Consensus 200 ~ 200 (204)
+
T Consensus 267 ~ 267 (364)
T 3ljn_A 267 T 267 (364)
T ss_dssp S
T ss_pred C
T ss_conf 8
No 9
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=172.83 Aligned_cols=158 Identities=24% Similarity=0.326 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 65679999996299899999997389999988878893999999709967999999829997634689985999999629
Q 028733 36 PHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGG 115 (204)
Q Consensus 36 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~l~~a~~~~ 115 (204)
.+.+||+.|+..|+.+.+++|++. +.+++..+..|.||||+|+..|+.+++++|++.+++++..+..|.||+|.|+..+
T Consensus 211 ~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 289 (437)
T 1n11_A 211 NGYTPLHIAAKQNQVEVARSLLQY-GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEG 289 (437)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 899889999986989999999976-9998887989997999999778899999999669999987999997999999849
Q ss_pred CHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 59999999860687078988653157899708879982599999999998499997678899996325789801899999
Q 028733 116 FIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKANLYGKTPSELPEPDTEARRILE 195 (204)
Q Consensus 116 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~ 195 (204)
+.+++++|++.+.+ ++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..+..+.+..
T Consensus 290 ~~~~~~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~ 362 (437)
T 1n11_A 290 HVPVADVLIKHGVM-------VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTL 362 (437)
T ss_dssp CHHHHHHHHHHTCC-------TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHCCCC-------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHH
T ss_conf 99999999848756-------78879999889999998694999999996699999889999889999998781999999
Q ss_pred HHHCCC
Q ss_conf 983077
Q 028733 196 VAASGQ 201 (204)
Q Consensus 196 ~~~~~~ 201 (204)
|+..|+
T Consensus 363 Ll~~ga 368 (437)
T 1n11_A 363 LLKNGA 368 (437)
T ss_dssp HHHTTC
T ss_pred HHHCCC
T ss_conf 997768
No 10
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=1.00 E-value=1 Score=171.80 Aligned_cols=177 Identities=25% Similarity=0.287 Sum_probs=110.4
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 77789998607888889999965679999996299899999997389999988878893999999709967999999829
Q 028733 15 EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG 94 (204)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~v~~Ll~~~ 94 (204)
.+.++.+.+.|.+++. .+..+.+||+.|+..|+.+.+++|+++ +.+++..+..|.||||+|+..++.+++++|++.|
T Consensus 53 ~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 129 (231)
T 3aji_A 53 TEIVEFLLQLGVPVND--KDDAGWSPLHIAASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129 (231)
T ss_dssp HHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHCCHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
T ss_conf 9999999980899987--689999999999982989999999975-9998877899997999999859799999999869
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 99763468998599999962959999999860687078988653157899708879982599999999998499997678
Q 028733 95 ASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTPLHHAARGEHVDVIRLLLASGASPTKAN 174 (204)
Q Consensus 95 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~Ll~~g~~~~~~~ 174 (204)
++++..+..|.||+|.|+..++.+++++|++.+.+ ++..+..|.||+|+|+..++.+++++|+++|++++..+
T Consensus 130 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 202 (231)
T 3aji_A 130 ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS-------TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202 (231)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf 79887288998599999984988999999966998-------55448899888999987799889999997799877878
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 899996325789801899999983077
Q 028733 175 LYGKTPSELPEPDTEARRILEVAASGQ 201 (204)
Q Consensus 175 ~~g~tpl~~a~~~~~~~~~~~~~~~~~ 201 (204)
..|.||+++|+..+....+..+...++
T Consensus 203 ~~g~t~l~~A~~~~~~~i~~lL~~~~a 229 (231)
T 3aji_A 203 KEEKTPLQVAKGGLGLILKRLAEGEEA 229 (231)
T ss_dssp TTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999989999983578999999726524
Done!