BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028735
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z54|A Chain A, Crystal Structure Of A Hypothetical Protein Tt1821 From
Thermus Thermophilus
pdb|1Z54|B Chain B, Crystal Structure Of A Hypothetical Protein Tt1821 From
Thermus Thermophilus
pdb|1Z54|C Chain C, Crystal Structure Of A Hypothetical Protein Tt1821 From
Thermus Thermophilus
pdb|1Z54|D Chain D, Crystal Structure Of A Hypothetical Protein Tt1821 From
Thermus Thermophilus
Length = 132
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 72 LQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAP 131
++VR E DQ GVV+++VYA Y + R +F ER G+ V G + EL L F AP
Sbjct: 7 IKVRYAETDQMGVVHHSVYAVYLEAARVDFLERAGLPYHRVEARGVFFPVVELGLTFRAP 66
Query: 132 LRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKG-TAVWLDKNYRPVRIPPEM 190
R G+ V+ R++ S+ L+F + + E +L A+G T R RIP ++
Sbjct: 67 ARFGEVVEVRTRLAELSSRALLFRYRV----EREGVLLAEGFTRHLCQVGERAARIPEDI 122
>pdb|2CYE|A Chain A, Crystal Structure Of Thioesterase Complexed With Coenzyme
A And Zn From Thermus Thermophilus Hb8
pdb|2CYE|B Chain B, Crystal Structure Of Thioesterase Complexed With Coenzyme
A And Zn From Thermus Thermophilus Hb8
pdb|2CYE|C Chain C, Crystal Structure Of Thioesterase Complexed With Coenzyme
A And Zn From Thermus Thermophilus Hb8
pdb|2CYE|D Chain D, Crystal Structure Of Thioesterase Complexed With Coenzyme
A And Zn From Thermus Thermophilus Hb8
Length = 133
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 79 LDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKF 138
LD G VNNAV+ SY + R +F+RI + E ++ + +L P+ GD+
Sbjct: 17 LDPLGHVNNAVFLSYXELARIRYFQRISPDWLEEGH----FVVARXEVDYLRPILLGDEV 72
Query: 139 VVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDKNYRPVRIPPEMRSKI 194
V VR G L +H + N E + G VWL+ RP +P +R +I
Sbjct: 73 FVGVRTVGLGRSSLRXEHLV--TANGESAAKGLGVLVWLEGG-RPAPLPEAIRERI 125
>pdb|3HM0|A Chain A, Crystal Structure Of Probable Thioesterase From Bartonella
Henselae
pdb|3HM0|B Chain B, Crystal Structure Of Probable Thioesterase From Bartonella
Henselae
pdb|3HM0|C Chain C, Crystal Structure Of Probable Thioesterase From Bartonella
Henselae
pdb|3HM0|D Chain D, Crystal Structure Of Probable Thioesterase From Bartonella
Henselae
Length = 167
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 67 FHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVAR--TGESL--ALS 122
FHD + +V + D GVV +A Y + + GR EF G N +A GE L +
Sbjct: 36 FHDFQARVYVADTDFSGVVYHARYLEFFERGRSEFLRDTGFNNTLLASGVEGEKLFFVVR 95
Query: 123 ELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDKNYR 182
+ + F P + + +K RIS R + +I L ++ AK +++ +
Sbjct: 96 HMEINFSRPAQIDNLLTIKTRISRLQGARFFMEQYI--LHGESMLVTAKVEIALINEEGK 153
Query: 183 PVRIPPEMRSKI 194
P R+P E+ S I
Sbjct: 154 PRRLPKELFSTI 165
>pdb|3QY3|A Chain A, Pa2801 Protein, A Putative Thioesterase From Pseudomonas
Aeruginosa
Length = 158
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
Query: 67 FHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSL 126
H + VR + D YG VNN +Y Y + R +FE +GI+ + A + L L
Sbjct: 29 LHTAHIPVRWGDXDSYGHVNNTLYFQYLEEARVAWFETLGIDLEGAAEG--PVVLQSLH- 85
Query: 127 KFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPIL-EAKGTAVWL-DKNYRPV 184
+L P+ VV++ L+ +H + L + + E VW+ R
Sbjct: 86 TYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHTLEDPQGTYGEGHCKLVWVRHAENRST 145
Query: 185 RIPPEMRSKIA 195
+P +R+ IA
Sbjct: 146 PVPDSIRAAIA 156
>pdb|2EGI|A Chain A, Crystal Structure Of A Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGI|C Chain C, Crystal Structure Of A Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGI|D Chain D, Crystal Structure Of A Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGI|E Chain E, Crystal Structure Of A Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGI|F Chain F, Crystal Structure Of A Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGI|G Chain G, Crystal Structure Of A Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGI|H Chain H, Crystal Structure Of A Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGI|I Chain I, Crystal Structure Of A Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGJ|A Chain A, Crystal Structure Of Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGJ|B Chain B, Crystal Structure Of Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGR|A Chain A, Crystal Structure Of Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGR|B Chain B, Crystal Structure Of Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
Length = 128
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 73 QVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPL 132
+V+ YE D G+V+++ Y Y + R EF G ++ G + L ++ PL
Sbjct: 8 RVQFYETDAQGIVHHSNYFRYFEEARGEFLRSKGFPYSKMRDMGLEVVLLNAYCEYKKPL 67
Query: 133 RSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKG-TAVWLDKNYRPVRIPPEM 190
D F V + + S F + +FK E I AK T + KN + V IP E+
Sbjct: 68 FYDDVFEVHLNLEELSRFTFTFSYIVFK----EDIAVAKANTKHCMVKNGKIVSIPKEV 122
>pdb|1NJK|A Chain A, Crystal Structure Of Ybaw Probable Thioesterase From
Escherichia Coli
pdb|1NJK|B Chain B, Crystal Structure Of Ybaw Probable Thioesterase From
Escherichia Coli
pdb|1NJK|C Chain C, Crystal Structure Of Ybaw Probable Thioesterase From
Escherichia Coli
pdb|1NJK|D Chain D, Crystal Structure Of Ybaw Probable Thioesterase From
Escherichia Coli
Length = 156
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 70 VELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVA-RTGESLA--LSELSL 126
+++VR Y LD Y VNNA Y + + R + E N D T ++A + +++
Sbjct: 25 TQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLE----NSDSFQWXTAHNIAFVVVNINI 80
Query: 127 KFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLD-KNYRPVR 185
+ P D + ++ + I I P + + +A T V +D K + +
Sbjct: 81 NYRRPAVLSDLLTITSQLQQLNGKSGILSQVITLEPEGQVVADALITFVCIDLKTQKALA 140
Query: 186 IPPEMRSKIAQFLR 199
+ E+R K+ Q ++
Sbjct: 141 LEGELREKLEQXVK 154
>pdb|2O5U|A Chain A, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (c222).
pdb|2O5U|B Chain B, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (c222).
pdb|2O5U|C Chain C, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (c222)
Length = 148
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 72 LQVRDYELDQYGVVNNAVYASYCQHGRHEFF-ERIGINCDEVARTGESLALS-ELSLKFL 129
+ R ++ D YG VNN Y ++ + + ER G++ + GE + L S +
Sbjct: 19 ISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDI----QGGEVIGLVVSSSCDYF 74
Query: 130 APLRSGDKFVVKVRIS--GGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDK-NYRPVRI 186
AP+ + + +R++ G S+V+ ++ +F E + V++++ + RPV I
Sbjct: 75 APVAFPQRIEMGLRVARLGNSSVQ--YELALFLEGQREACAAGRFVHVFVERRSSRPVAI 132
Query: 187 PPEMRSKIA 195
P E+R +A
Sbjct: 133 PQELRDALA 141
>pdb|2O6B|A Chain A, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- New Crystal Form.
pdb|2O6B|B Chain B, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- New Crystal Form.
pdb|2O6T|A Chain A, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6T|C Chain C, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6T|E Chain E, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6T|G Chain G, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6T|I Chain I, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6T|K Chain K, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- Orthorhombic Form (P2221).
pdb|2O6U|A Chain A, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- New Crystal Form.
pdb|2O6U|B Chain B, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1- New Crystal Form
Length = 149
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 72 LQVRDYELDQYGVVNNAVYASYCQHGRHEFF-ERIGINCDEVARTGESLALS-ELSLKFL 129
+ R ++ D YG VNN Y ++ + + ER G++ + GE + L S +
Sbjct: 20 ISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDI----QGGEVIGLVVSSSCDYF 75
Query: 130 APLRSGDKFVVKVRIS--GGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDK-NYRPVRI 186
AP+ + + +R++ G S+V+ ++ +F E + V++++ + RPV I
Sbjct: 76 APVAFPQRIEMGLRVARLGNSSVQ--YELALFLEGQREACAAGRFVHVFVERRSSRPVAI 133
Query: 187 PPEMRSKIA 195
P E+R +A
Sbjct: 134 PQELRDALA 142
>pdb|2AV9|A Chain A, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|B Chain B, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|C Chain C, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|D Chain D, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|E Chain E, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|F Chain F, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|G Chain G, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|H Chain H, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|I Chain I, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|J Chain J, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|K Chain K, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1.
pdb|2AV9|L Chain L, Crystal Structure Of The Pa5185 Protein From Pseudomonas
Aeruginosa Strain Pao1
Length = 147
Score = 33.1 bits (74), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 72 LQVRDYELDQYGVVNNAVYASYCQHGRHEFF-ERIGINCDEVARTGESLALS-ELSLKFL 129
+ R ++ D YG VNN Y ++ + + ER G++ + GE + L S +
Sbjct: 18 ISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDI----QGGEVIGLVVSSSCDYF 73
Query: 130 APLRSGDKFVVKVRIS--GGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDK-NYRPVRI 186
AP+ + +R++ G S+V+ ++ +F E + V++++ + RPV I
Sbjct: 74 APVAFPQRIEXGLRVARLGNSSVQ--YELALFLEGQREACAAGRFVHVFVERRSSRPVAI 131
Query: 187 PPEMRSKIA 195
P E+R +A
Sbjct: 132 PQELRDALA 140
>pdb|1S5U|A Chain A, Crystal Structure Of Hypothetical Protein Ec709 From
Escherichia Coli
pdb|1S5U|B Chain B, Crystal Structure Of Hypothetical Protein Ec709 From
Escherichia Coli
pdb|1S5U|C Chain C, Crystal Structure Of Hypothetical Protein Ec709 From
Escherichia Coli
pdb|1S5U|D Chain D, Crystal Structure Of Hypothetical Protein Ec709 From
Escherichia Coli
pdb|1S5U|E Chain E, Crystal Structure Of Hypothetical Protein Ec709 From
Escherichia Coli
pdb|1S5U|F Chain F, Crystal Structure Of Hypothetical Protein Ec709 From
Escherichia Coli
pdb|1S5U|G Chain G, Crystal Structure Of Hypothetical Protein Ec709 From
Escherichia Coli
pdb|1S5U|H Chain H, Crystal Structure Of Hypothetical Protein Ec709 From
Escherichia Coli
Length = 138
Score = 33.1 bits (74), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 19/133 (14%)
Query: 74 VRDY--ELDQYGVVNNAVYASYCQHG-----RHEFFERIGINCDEVARTGESLALSELSL 126
VR Y + D GVV +A Y ++ + RH F + + + VA + ++++
Sbjct: 12 VRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVA-----FVVRKMTV 66
Query: 127 KFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDKNYRPVRI 186
++ AP R D ++ I+ L+F I N + EA+ V +D P+++
Sbjct: 67 EYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAEN-TLLNEAEVLVVCVD----PLKM 121
Query: 187 PPEM--RSKIAQF 197
P +S +A+F
Sbjct: 122 KPRALPKSIVAEF 134
>pdb|2NUJ|A Chain A, Crystal Structure Of Thioesterase Superfamily
(Yp_509914.1) From Jannaschia Sp. Ccs1 At 2.00 A
Resolution
pdb|2NUJ|B Chain B, Crystal Structure Of Thioesterase Superfamily
(Yp_509914.1) From Jannaschia Sp. Ccs1 At 2.00 A
Resolution
Length = 163
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Query: 73 QVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPL 132
+VR ELD G VN+ Y + + R F + + + T L L ++ +LA
Sbjct: 32 RVRFGELDAIGHVNHTAYLRWYESFRLPFLKARHVT--DYGPTSPRLVLKQVHCTYLAEX 89
Query: 133 RSGDKFVVKVRISGGSAVRLIFDHFIFKLPNH-EPILEAKGTAVWLDKN 180
G+ +V+ R+S + ++L + E E V L+++
Sbjct: 90 GXGEDYVITGRVSNFRTTSFTXEFACWRLGDAVECTSEGSAVVVLLNRD 138
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 45 AAVRRCRSPAFLDLNGGKGMSEFHDVELQVRDYEL 79
AA+ C LD N KG+S + L V D+EL
Sbjct: 214 AAIESCNKALELDSNNEKGLSRRGEAHLAVNDFEL 248
>pdb|2PZH|A Chain A, Ybgc Thioesterase (Hp0496) From Helicobacter Pylori
pdb|2PZH|C Chain C, Ybgc Thioesterase (Hp0496) From Helicobacter Pylori
pdb|2PZH|D Chain D, Ybgc Thioesterase (Hp0496) From Helicobacter Pylori
pdb|2PZH|B Chain B, Ybgc Thioesterase (Hp0496) From Helicobacter Pylori
Length = 135
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 78 ELDQYGVVNNAVYASYCQHGRHEFF 102
+ D GVV +A Y YC+ R EFF
Sbjct: 11 DTDSEGVVYHANYLKYCERARSEFF 35
>pdb|1QH4|A Chain A, Crystal Structure Of Chicken Brain-Type Creatine Kinase At
1.41 Angstrom Resolution
pdb|1QH4|B Chain B, Crystal Structure Of Chicken Brain-Type Creatine Kinase At
1.41 Angstrom Resolution
pdb|1QH4|C Chain C, Crystal Structure Of Chicken Brain-Type Creatine Kinase At
1.41 Angstrom Resolution
pdb|1QH4|D Chain D, Crystal Structure Of Chicken Brain-Type Creatine Kinase At
1.41 Angstrom Resolution
Length = 380
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 13/76 (17%)
Query: 116 GESLALSELSLKFLAPLRSGD---KFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKG 172
GE A+ +LS++ L L GD K+ ++ +LI DHF+F P P+L A G
Sbjct: 148 GERRAIEKLSVEALGSL-GGDLKGKYYALRNMTDAEQQQLIDDHFLFDKPV-SPLLLASG 205
Query: 173 TA--------VWLDKN 180
A +W + N
Sbjct: 206 MARDWPDARGIWHNDN 221
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 39 RVLRSLAAVRRCRSPAFLDLNGGKGMSEFHDVELQVRDYELDQYGVVN----NAVYASYC 94
R+L S+ R C +P G KG + D E R + L + + + N ++A +
Sbjct: 130 RILPSVP--RDCPTPM-----GTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFA 182
Query: 95 QHGRHEFFERIG 106
QH H+FF+ G
Sbjct: 183 QHFTHQFFKTSG 194
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 39 RVLRSLAAVRRCRSPAFLDLNGGKGMSEFHDVELQVRDYELDQYGVVN----NAVYASYC 94
R+L S+ R C +P G KG + D E R + L + + + N ++A +
Sbjct: 126 RILPSVP--RDCPTPM-----GTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFA 178
Query: 95 QHGRHEFFERIG 106
QH H+FF+ G
Sbjct: 179 QHFTHQFFKTSG 190
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 39 RVLRSLAAVRRCRSPAFLDLNGGKGMSEFHDVELQVRDYELDQYGVVN----NAVYASYC 94
R+L S+ R C +P G KG + D E R + L + + + N ++A +
Sbjct: 150 RILPSVP--RDCPTPM-----GTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFA 202
Query: 95 QHGRHEFFERIG 106
QH H+FF+ G
Sbjct: 203 QHFTHQFFKTSG 214
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 39 RVLRSLAAVRRCRSPAFLDLNGGKGMSEFHDVELQVRDYELDQYGVVN----NAVYASYC 94
R+L S+ R C +P G KG + D E R + L + + + N ++A +
Sbjct: 126 RILPSVP--RDCPTPM-----GTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFA 178
Query: 95 QHGRHEFFERIG 106
QH H+FF+ G
Sbjct: 179 QHFTHQFFKTSG 190
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 39 RVLRSLAAVRRCRSPAFLDLNGGKGMSEFHDVELQVRDYELDQYGVVN----NAVYASYC 94
R+L S+ R C +P G KG + D E R + L + + + N ++A +
Sbjct: 150 RILPSVP--RDCPTPM-----GTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFA 202
Query: 95 QHGRHEFFERIG 106
QH H+FF+ G
Sbjct: 203 QHFTHQFFKTSG 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,001,654
Number of Sequences: 62578
Number of extensions: 230676
Number of successful extensions: 551
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 538
Number of HSP's gapped (non-prelim): 29
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)