BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028735
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55116|Y410_SYNY3 Uncharacterized protein sll0410 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0410 PE=3 SV=1
Length = 166
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Query: 65 SEFHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSEL 124
++ ++ ++V+ + D GVV + Y ++ + R E IG++ ++ + G L + L
Sbjct: 30 EKWFEIMVRVQPHHTDYGGVVWHGTYLTWLETARVECLRSIGVDFADLVKLGCDLPVVSL 89
Query: 125 SLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLD--KNYR 182
+L++ +R G V+KV++ VRL + + I L EP + K T V +D K
Sbjct: 90 ALRYHRAIRLGQTAVIKVQMQEIQKVRLEWQNQIVCLETGEPCVTGKITLVAIDPAKGKI 149
Query: 183 PVRIPPEMRSKIAQFLRQ 200
R+PP ++ + + LRQ
Sbjct: 150 MRRLPPVVQEHLLK-LRQ 166
>sp|Q45061|YNEP_BACSU Uncharacterized protein YneP OS=Bacillus subtilis (strain 168)
GN=yneP PE=3 SV=2
Length = 138
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 71 ELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLA 130
E++VR E DQ G+V +A Y + + GR + +G ++ + G + ++++ +
Sbjct: 7 EIEVRYAETDQMGIVYHANYLVWMEVGRTALIKDLGFLYSDMEKKGVLSPVVDINISYKK 66
Query: 131 PLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDK-NYRPVR 185
PL G+ VV I + + ++ + I+ P E ++A + + +DK +++P++
Sbjct: 67 PLHYGETAVVHTWIEDYNGFKTVYGYHIYN-PAGELSIKATSSHICVDKESFKPIQ 121
>sp|O67466|Y1494_AQUAE Uncharacterized protein aq_1494 OS=Aquifex aeolicus (strain VF5)
GN=aq_1494 PE=1 SV=1
Length = 128
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 73 QVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPL 132
+V+ YE D G+V+++ Y Y + R EF G ++ G + L ++ PL
Sbjct: 8 RVQFYETDAQGIVHHSNYFRYFEEARGEFLRSKGFPYSKMRDMGLEVVLLNAYCEYKKPL 67
Query: 133 RSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKG-TAVWLDKNYRPVRIPPEM 190
D F V + + S F + +FK E I AK T + KN + V IP E+
Sbjct: 68 FYDDVFEVHLNLEELSRFTFTFSYIVFK----EDIAVAKANTKHCMVKNGKIVSIPKEV 122
>sp|Q55777|DNCH_SYNY3 1,4-dihydroxy-2-naphthoyl-CoA hydrolase OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=slr0204 PE=1 SV=1
Length = 138
Score = 37.0 bits (84), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 71 ELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGE-SLALSELSLKFL 129
E QV + D GVV + C + ++ + G+ +L L S+ F
Sbjct: 7 ERQVYLADTDGAGVVYFNQFLQMCHEAYESWLSSEHLSLQNIISVGDFALPLVHASIDFF 66
Query: 130 APLRSGDKFVVKVRISGGSAVRLIFDHFI 158
AP GD+ +V + I+ SA R D+ I
Sbjct: 67 APAHCGDRLLVNLTITQASAHRFCCDYEI 95
>sp|Q55FW8|FAN1_DICDI Fanconi-associated nuclease 1 homolog OS=Dictyostelium discoideum
GN=mtmr15 PE=3 SV=1
Length = 1087
Score = 35.4 bits (80), Expect = 0.24, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 89 VYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVK 141
+ + YC+ R +++R+ IN + R+ ++L ++E SLK LRSGD+ ++
Sbjct: 593 IESPYCRGKRGYWWQRMIINHKHLHRSDDALLIAERSLKEDPFLRSGDRLAIE 645
>sp|P77712|FADM_ECOLI Long-chain acyl-CoA thioesterase FadM OS=Escherichia coli (strain
K12) GN=fadM PE=1 SV=1
Length = 132
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 8/133 (6%)
Query: 71 ELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVA-RTGESLA--LSELSLK 127
+++VR Y LD Y VNNA Y + + R + E N D T ++A + +++
Sbjct: 4 QIKVRGYHLDVYQHVNNARYLEFLEEARWDGLE----NSDSFQWMTAHNIAFVVVNININ 59
Query: 128 FLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLD-KNYRPVRI 186
+ P D + ++ + I I P + + +A T V +D K + + +
Sbjct: 60 YRRPAVLSDLLTITSQLQQLNGKSGILSQVITLEPEGQVVADALITFVCIDLKTQKALAL 119
Query: 187 PPEMRSKIAQFLR 199
E+R K+ Q ++
Sbjct: 120 EGELREKLEQMVK 132
>sp|P0A8Z6|YBGC_SHIFL Acyl-CoA thioester hydrolase YbgC OS=Shigella flexneri GN=ybgC PE=3
SV=1
Length = 134
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 19/133 (14%)
Query: 74 VRDY--ELDQYGVVNNAVYASYCQHG-----RHEFFERIGINCDEVARTGESLALSELSL 126
VR Y + D GVV +A Y ++ + RH F + + + VA + ++++
Sbjct: 10 VRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVA-----FVVRKMTV 64
Query: 127 KFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDKNYRPVRI 186
++ AP R D ++ I+ L+F I N + EA+ V +D P+++
Sbjct: 65 EYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAEN-TLLNEAEVLVVCVD----PLKM 119
Query: 187 PPEM--RSKIAQF 197
P +S +A+F
Sbjct: 120 KPRALPKSIVAEF 132
>sp|P0A8Z3|YBGC_ECOLI Acyl-CoA thioester hydrolase YbgC OS=Escherichia coli (strain K12)
GN=ybgC PE=1 SV=1
Length = 134
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 19/133 (14%)
Query: 74 VRDY--ELDQYGVVNNAVYASYCQHG-----RHEFFERIGINCDEVARTGESLALSELSL 126
VR Y + D GVV +A Y ++ + RH F + + + VA + ++++
Sbjct: 10 VRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVA-----FVVRKMTV 64
Query: 127 KFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDKNYRPVRI 186
++ AP R D ++ I+ L+F I N + EA+ V +D P+++
Sbjct: 65 EYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAEN-TLLNEAEVLVVCVD----PLKM 119
Query: 187 PPEM--RSKIAQF 197
P +S +A+F
Sbjct: 120 KPRALPKSIVAEF 132
>sp|P0A8Z4|YBGC_ECOL6 Acyl-CoA thioester hydrolase YbgC OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=ybgC PE=3 SV=1
Length = 134
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 19/133 (14%)
Query: 74 VRDY--ELDQYGVVNNAVYASYCQHG-----RHEFFERIGINCDEVARTGESLALSELSL 126
VR Y + D GVV +A Y ++ + RH F + + + VA + ++++
Sbjct: 10 VRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVA-----FVVRKMTV 64
Query: 127 KFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDKNYRPVRI 186
++ AP R D ++ I+ L+F I N + EA+ V +D P+++
Sbjct: 65 EYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAEN-TLLNEAEVLVVCVD----PLKM 119
Query: 187 PPEM--RSKIAQF 197
P +S +A+F
Sbjct: 120 KPRALPKSIVAEF 132
>sp|P0A8Z5|YBGC_ECO57 Acyl-CoA thioester hydrolase YbgC OS=Escherichia coli O157:H7
GN=ybgC PE=3 SV=1
Length = 134
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 19/133 (14%)
Query: 74 VRDY--ELDQYGVVNNAVYASYCQHG-----RHEFFERIGINCDEVARTGESLALSELSL 126
VR Y + D GVV +A Y ++ + RH F + + + VA + ++++
Sbjct: 10 VRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVA-----FVVRKMTV 64
Query: 127 KFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDKNYRPVRI 186
++ AP R D ++ I+ L+F I N + EA+ V +D P+++
Sbjct: 65 EYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAEN-TLLNEAEVLVVCVD----PLKM 119
Query: 187 PPEM--RSKIAQF 197
P +S +A+F
Sbjct: 120 KPRALPKSIVAEF 132
>sp|Q8DLK3|DNCH_THEEB 1,4-dihydroxy-2-naphthoyl-CoA hydrolase OS=Thermosynechococcus
elongatus (strain BP-1) GN=tll0488 PE=3 SV=1
Length = 146
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 74 VRDY-------ELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEV-ARTGESLALSELS 125
+RDY + D GVV A +C + ++G++ + + +G + ++E
Sbjct: 6 LRDYQRTVHFADTDAAGVVYFANLLRFCHEAYEDALAQLGVDLRQFFSNSGLIVPITEAQ 65
Query: 126 LKFLAPLRSGDKFVVKV 142
++FL PL GD+ V +
Sbjct: 66 IRFLKPLYCGDRLRVTI 82
>sp|Q8TH25|HIS8_PYRFU Histidinol-phosphate aminotransferase OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=hisC
PE=3 SV=1
Length = 338
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 163 NHEPILEAKGTA-VWLDKNYRPVRIPPEMRSKIAQFLRQEE 202
N EP +G +WLDKN P +PP+++ +I + L++ E
Sbjct: 8 NFEPYRAVEGNYRIWLDKNESPYDLPPQLKEEILEELKRIE 48
>sp|Q6AJ19|TILS_DESPS tRNA(Ile)-lysidine synthase OS=Desulfotalea psychrophila (strain
LSv54 / DSM 12343) GN=tilS PE=3 SV=1
Length = 471
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 131 PLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDKNYRPVRIPPEM 190
PL+SGDK +V V G A + H + +L L+ + A+++D RP IP E+
Sbjct: 24 PLKSGDKIIVGV---SGGADSIALLHILTELN-----LDLQLIAIYIDHGLRPDEIPQEI 75
>sp|Q9D850|TMM68_MOUSE Transmembrane protein 68 OS=Mus musculus GN=Tmem68 PE=2 SV=1
Length = 329
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 138 FVVKVRISGGSAVRLIFDHFIFKLPNHEPILEA 170
F+ K+ I G R++ DHF+FK+P +L+
Sbjct: 139 FMAKIFIQKGRTCRVVADHFVFKIPGFSLLLDV 171
>sp|Q0VCR6|TMM68_BOVIN Transmembrane protein 68 OS=Bos taurus GN=TMEM68 PE=2 SV=1
Length = 334
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 138 FVVKVRISGGSAVRLIFDHFIFKLPNHEPILEA 170
F+ K+ I G R++ DHF+FK+P +L+
Sbjct: 140 FMAKIFIHKGRTCRVVADHFVFKIPGFSLLLDV 172
>sp|C5A5L9|TIAS_THEGJ tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=tiaS PE=3 SV=2
Length = 428
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 39 RVLRSLAAVRRCRSPAFLDLNGGKGMSEFHDVELQVRDYELDQYGVVNNAVYASYCQHGR 98
RVL++ VR AF L ++ H ++ + +L VV V Y + GR
Sbjct: 224 RVLQTFEMVRFGEPVAFYQLYKTNQNTDDHLTPKKIGELKLYDSAVVRGRVSKPYWERGR 283
Query: 99 HEFFE 103
H FFE
Sbjct: 284 HVFFE 288
>sp|Q96MH6|TMM68_HUMAN Transmembrane protein 68 OS=Homo sapiens GN=TMEM68 PE=2 SV=2
Length = 324
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 138 FVVKVRISGGSAVRLIFDHFIFKLPNHEPILEA 170
F+ K+ I G R++ DHF+FK+P +L+
Sbjct: 140 FMAKIFIHKGRTCRVVADHFVFKIPGFSLLLDV 172
>sp|P24449|ZEAC_MAIZE Zein-alpha PMS1 OS=Zea mays GN=ZMPMS1 PE=3 SV=1
Length = 235
Score = 30.8 bits (68), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 4 AFISPAHVRLPTARVQAPFLPPPVAFPTTQPLMPP-RVLRSLAAVRRCRSPAFLDLNGG- 61
A I P + P A + P+L P V+ P++ P R+ +++AA SP FL +
Sbjct: 21 ATIFPQCSQAPIASLLPPYLSPAVSSVCENPILQPYRIQQAIAAGILPLSPLFLQQSSAL 80
Query: 62 -KGMSEFHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLA 120
+ + H + +R +L Q + N A Y+ Q F + +N + + L
Sbjct: 81 LQQLPLVHLLAQNIRAQQLQQLVLANVAAYSQ--QQQFLPFNQLAALNSAAYLQQQQLLP 138
Query: 121 LSELSLKF 128
S+L+ +
Sbjct: 139 FSQLTAAY 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,872,737
Number of Sequences: 539616
Number of extensions: 3166184
Number of successful extensions: 8705
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 8676
Number of HSP's gapped (non-prelim): 39
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)