Query 028735
Match_columns 204
No_of_seqs 189 out of 1408
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 16:09:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0824 FcbC Predicted thioest 100.0 1E-31 2.2E-36 205.7 19.0 132 65-198 3-135 (137)
2 PRK10800 acyl-CoA thioesterase 100.0 2.5E-31 5.5E-36 201.0 18.9 127 67-194 2-129 (130)
3 TIGR02799 thio_ybgC tol-pal sy 100.0 1.2E-29 2.5E-34 190.1 16.6 123 68-192 1-125 (126)
4 PF13279 4HBT_2: Thioesterase- 100.0 3E-28 6.5E-33 181.4 17.1 119 74-194 1-121 (121)
5 TIGR00051 acyl-CoA thioester h 100.0 2E-27 4.4E-32 175.1 15.8 116 71-187 1-117 (117)
6 PRK07531 bifunctional 3-hydrox 99.9 3.5E-25 7.6E-30 201.3 18.8 137 64-202 342-479 (495)
7 PLN02370 acyl-ACP thioesterase 99.9 3.6E-23 7.7E-28 183.0 20.0 151 47-198 116-277 (419)
8 cd00586 4HBT 4-hydroxybenzoyl- 99.9 1.2E-20 2.6E-25 135.4 15.6 110 68-178 1-110 (110)
9 PF01643 Acyl-ACP_TE: Acyl-ACP 99.9 4.3E-21 9.4E-26 161.4 14.5 128 67-194 3-137 (261)
10 cd03442 BFIT_BACH Brown fat-in 99.7 1.2E-15 2.6E-20 112.9 16.3 113 66-187 6-123 (123)
11 PF01643 Acyl-ACP_TE: Acyl-ACP 99.6 2.5E-14 5.4E-19 120.4 11.5 121 40-174 117-259 (261)
12 PF03061 4HBT: Thioesterase su 99.5 4.9E-13 1.1E-17 91.3 11.7 79 82-168 1-79 (79)
13 COG3884 FatA Acyl-ACP thioeste 99.4 1E-12 2.3E-17 106.6 9.8 126 69-196 5-132 (250)
14 cd03440 hot_dog The hotdog fol 99.4 1.7E-11 3.6E-16 83.0 13.5 98 69-174 2-99 (100)
15 PLN02370 acyl-ACP thioesterase 99.4 5.6E-12 1.2E-16 112.0 11.5 124 40-177 253-403 (419)
16 PRK10694 acyl-CoA esterase; Pr 99.4 9.1E-11 2E-15 89.3 16.0 113 67-188 11-131 (133)
17 COG1607 Acyl-CoA hydrolase [Li 99.3 9.2E-11 2E-15 91.1 14.5 118 67-193 13-135 (157)
18 cd03443 PaaI_thioesterase PaaI 99.3 3.2E-10 6.9E-15 82.5 14.7 100 67-175 13-112 (113)
19 COG3884 FatA Acyl-ACP thioeste 99.1 6.9E-10 1.5E-14 90.3 8.8 114 40-174 110-239 (250)
20 KOG4366 Predicted thioesterase 98.9 3.7E-10 8E-15 88.8 0.8 126 69-195 52-191 (213)
21 PLN02647 acyl-CoA thioesterase 98.8 3.9E-07 8.5E-12 81.8 15.9 114 73-188 99-221 (437)
22 TIGR02286 PaaD phenylacetic ac 98.7 5E-07 1.1E-11 66.5 13.4 97 68-175 16-112 (114)
23 TIGR00369 unchar_dom_1 unchara 98.7 6.8E-07 1.5E-11 66.0 13.6 99 68-175 18-116 (117)
24 PRK10254 thioesterase; Provisi 98.5 9.2E-06 2E-10 62.1 15.5 102 67-177 35-136 (137)
25 PRK10293 acyl-CoA esterase; Pr 98.5 6.2E-06 1.3E-10 63.0 14.3 101 67-176 35-135 (136)
26 PRK11688 hypothetical protein; 98.5 6.3E-06 1.4E-10 64.0 13.5 106 68-175 39-152 (154)
27 PLN02322 acyl-CoA thioesterase 98.4 3.2E-05 6.9E-10 60.3 15.0 104 67-178 27-135 (154)
28 COG2050 PaaI HGG motif-contain 98.4 2.7E-05 5.9E-10 59.5 14.4 105 67-179 35-139 (141)
29 PLN02647 acyl-CoA thioesterase 98.2 9.2E-05 2E-09 66.7 16.5 118 63-188 285-414 (437)
30 KOG3328 HGG motif-containing t 98.0 0.0001 2.2E-09 56.6 11.2 104 67-178 38-141 (148)
31 TIGR02447 yiiD_Cterm thioester 97.8 0.0014 3E-08 50.0 14.1 97 68-177 24-137 (138)
32 COG5496 Predicted thioesterase 97.7 0.0045 9.8E-08 46.3 14.8 104 67-179 6-116 (130)
33 cd03449 R_hydratase (R)-hydrat 97.7 0.00078 1.7E-08 49.7 10.4 58 117-175 68-127 (128)
34 PRK04424 fatty acid biosynthes 97.6 0.004 8.6E-08 49.9 14.5 95 68-176 86-181 (185)
35 cd01288 FabZ FabZ is a 17kD be 97.5 0.004 8.6E-08 46.1 12.8 88 83-176 43-130 (131)
36 PRK00006 fabZ (3R)-hydroxymyri 97.5 0.016 3.4E-07 44.2 15.5 89 83-178 58-146 (147)
37 cd00493 FabA_FabZ FabA/Z, beta 97.2 0.031 6.8E-07 41.1 14.3 88 82-173 41-128 (131)
38 COG4109 Predicted transcriptio 97.2 0.0034 7.3E-08 54.8 10.0 98 67-175 332-429 (432)
39 cd00556 Thioesterase_II Thioes 97.2 0.011 2.3E-07 41.5 10.9 84 82-175 14-98 (99)
40 cd03455 SAV4209 SAV4209 is a S 97.0 0.0081 1.8E-07 44.4 9.2 55 119-174 67-122 (123)
41 TIGR01750 fabZ beta-hydroxyacy 97.0 0.05 1.1E-06 41.0 13.7 103 68-175 30-139 (140)
42 cd03447 FAS_MaoC FAS_MaoC, the 97.0 0.013 2.8E-07 43.9 10.2 56 119-174 68-123 (126)
43 PRK13692 (3R)-hydroxyacyl-ACP 96.9 0.018 4E-07 44.9 10.6 60 119-179 84-147 (159)
44 cd03441 R_hydratase_like (R)-h 96.9 0.022 4.7E-07 41.7 10.4 56 117-173 66-125 (127)
45 PF14539 DUF4442: Domain of un 96.8 0.028 6E-07 42.4 11.0 98 67-175 30-131 (132)
46 PRK13691 (3R)-hydroxyacyl-ACP 96.8 0.019 4.2E-07 45.2 10.4 59 120-179 85-147 (166)
47 cd03453 SAV4209_like SAV4209_l 96.6 0.024 5.2E-07 42.1 9.2 53 121-174 70-126 (127)
48 cd03446 MaoC_like MoaC_like 96.6 0.023 5E-07 42.6 8.9 54 121-175 80-139 (140)
49 cd03451 FkbR2 FkbR2 is a Strep 96.5 0.016 3.4E-07 43.9 7.8 54 122-176 82-142 (146)
50 PF13452 MaoC_dehydrat_N: N-te 96.3 0.021 4.6E-07 42.5 7.4 52 117-169 73-131 (132)
51 cd03454 YdeM YdeM is a Bacillu 96.3 0.023 5E-07 42.8 7.5 52 123-175 80-138 (140)
52 PF07977 FabA: FabA-like domai 96.3 0.14 3E-06 38.6 11.6 102 68-171 27-138 (138)
53 cd03452 MaoC_C MaoC_C The C-t 96.0 0.033 7.1E-07 42.4 7.2 53 123-176 80-138 (142)
54 PRK08190 bifunctional enoyl-Co 95.6 0.15 3.2E-06 46.6 10.8 61 118-179 82-144 (466)
55 cd01287 FabA FabA, beta-hydrox 95.3 1 2.2E-05 34.8 13.2 107 68-177 29-147 (150)
56 PF09500 YiiD_Cterm: Putative 95.3 1 2.2E-05 34.7 13.2 88 78-177 39-143 (144)
57 PF13622 4HBT_3: Thioesterase- 95.2 0.57 1.2E-05 38.6 12.3 82 82-178 9-90 (255)
58 PLN02864 enoyl-CoA hydratase 95.0 0.19 4.2E-06 43.4 9.3 61 119-179 94-158 (310)
59 cd01289 FabA_like Domain of un 94.9 1.1 2.5E-05 33.8 12.2 90 82-175 44-135 (138)
60 COG0764 FabA 3-hydroxymyristoy 94.6 0.72 1.6E-05 35.6 10.4 60 117-178 85-145 (147)
61 cd03445 Thioesterase_II_repeat 94.1 1.3 2.8E-05 31.2 10.3 79 81-174 14-92 (94)
62 PRK13188 bifunctional UDP-3-O- 94.0 3 6.5E-05 38.2 14.8 106 67-178 349-461 (464)
63 cd03450 NodN NodN (nodulation 93.3 1 2.2E-05 34.7 9.2 58 119-176 85-147 (149)
64 COG2030 MaoC Acyl dehydratase 93.2 0.82 1.8E-05 35.5 8.6 59 118-177 93-155 (159)
65 PF03756 AfsA: A-factor biosyn 93.1 1.5 3.3E-05 32.6 9.7 59 116-176 69-132 (132)
66 cd03448 HDE_HSD HDE_HSD The R 92.2 0.84 1.8E-05 33.9 7.1 48 119-171 70-117 (122)
67 cd03444 Thioesterase_II_repeat 90.4 5 0.00011 28.7 11.5 87 84-175 15-103 (104)
68 KOG2763 Acyl-CoA thioesterase 90.2 5.7 0.00012 35.1 11.2 110 74-187 15-135 (357)
69 PF01575 MaoC_dehydratas: MaoC 89.7 1.2 2.7E-05 32.6 6.0 34 118-151 75-108 (122)
70 PRK11563 bifunctional aldehyde 88.9 1.2 2.6E-05 42.6 6.7 50 124-174 616-671 (675)
71 TIGR02278 PaaN-DH phenylacetic 88.7 1.6 3.4E-05 41.8 7.3 52 123-175 603-660 (663)
72 PF13622 4HBT_3: Thioesterase- 87.9 13 0.00029 30.4 11.6 57 118-175 196-254 (255)
73 PF02551 Acyl_CoA_thio: Acyl-C 87.6 7.4 0.00016 29.5 8.9 60 115-175 72-131 (131)
74 PLN02864 enoyl-CoA hydratase 87.2 4.8 0.00011 34.8 8.8 52 119-175 253-304 (310)
75 COG1946 TesB Acyl-CoA thioeste 86.2 13 0.00028 32.0 10.5 105 70-178 178-284 (289)
76 PRK13693 (3R)-hydroxyacyl-ACP 85.4 14 0.0003 28.0 9.6 51 122-173 81-138 (142)
77 PRK05174 3-hydroxydecanoyl-(ac 84.2 19 0.00041 28.4 14.1 101 68-177 55-165 (172)
78 TIGR00189 tesB acyl-CoA thioes 82.1 9.1 0.0002 31.9 8.1 78 83-175 21-98 (271)
79 TIGR00189 tesB acyl-CoA thioes 81.1 31 0.00066 28.7 13.0 57 119-176 214-270 (271)
80 TIGR01749 fabA beta-hydroxyacy 78.3 31 0.00067 27.1 15.3 101 67-176 51-161 (169)
81 PRK10526 acyl-CoA thioesterase 74.0 21 0.00047 30.3 8.1 80 81-175 30-109 (286)
82 KOG2763 Acyl-CoA thioesterase 71.8 63 0.0014 28.7 10.5 86 66-159 198-283 (357)
83 KOG3016 Acyl-CoA thioesterase 71.0 47 0.001 28.6 9.2 95 70-172 198-293 (294)
84 KOG4781 Uncharacterized conser 65.5 9.4 0.0002 31.7 3.8 77 76-160 135-211 (237)
85 PLN02868 acyl-CoA thioesterase 64.5 26 0.00056 31.3 6.9 56 119-175 357-412 (413)
86 PF10862 FcoT: FcoT-like thioe 63.2 70 0.0015 24.9 11.9 96 70-165 35-148 (157)
87 PRK10526 acyl-CoA thioesterase 62.3 97 0.0021 26.3 13.4 60 117-177 224-283 (286)
88 PF14765 PS-DH: Polyketide syn 57.4 1.1E+02 0.0024 25.2 9.8 59 115-174 226-285 (295)
89 COG0231 Efp Translation elonga 44.4 1.3E+02 0.0029 22.5 7.8 85 115-201 18-110 (131)
90 PLN02868 acyl-CoA thioesterase 42.7 1.2E+02 0.0026 27.0 7.5 80 82-176 157-236 (413)
91 PRK12442 translation initiatio 29.8 64 0.0014 22.6 2.8 26 132-157 47-72 (87)
92 TIGR02813 omega_3_PfaA polyket 28.6 2E+02 0.0042 32.5 7.4 61 118-179 2515-2575(2582)
93 COG0361 InfA Translation initi 24.3 86 0.0019 21.4 2.6 25 132-156 47-71 (75)
94 PF11456 DUF3019: Protein of u 24.3 2.7E+02 0.0059 19.9 5.5 31 154-184 65-96 (102)
95 PF03527 RHS: RHS protein; In 23.7 30 0.00066 20.7 0.3 10 74-83 1-10 (41)
96 KOG2891 Surface glycoprotein [ 23.3 99 0.0021 26.7 3.3 61 74-136 210-272 (445)
97 COG3777 Uncharacterized conser 22.2 73 0.0016 26.9 2.3 53 125-179 84-144 (273)
No 1
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=100.00 E-value=1e-31 Score=205.72 Aligned_cols=132 Identities=27% Similarity=0.439 Sum_probs=125.8
Q ss_pred CcceEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEE
Q 028735 65 SEFHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRI 144 (204)
Q Consensus 65 ~~~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i 144 (204)
...|+.+++|+|+|||.+|||||++|+.|||+||.++++++|+++.++.+.|..+++++.+++|++|+++||.+.|++++
T Consensus 3 ~~~~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~~~~~~~~~~~v~~~~i~y~~p~~~~d~l~v~~~v 82 (137)
T COG0824 3 SFPFSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFDYADLEEGGIAFVVVEAEIDYLRPARLGDVLTVRTRV 82 (137)
T ss_pred CcceEEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHHcCCCHHHHhhCCcEEEEEEEEeEECCCccCCCEEEEEEEE
Confidence 45689999999999999999999999999999999999999999988888899999999999999999999999999999
Q ss_pred EeecCeEEEEEEEEEEcCCCeEEEEEEEEEEEEeC-CCCccCCCHHHHHHHHhhh
Q 028735 145 SGGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDK-NYRPVRIPPEMRSKIAQFL 198 (204)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~dg~~~a~a~~~~V~vD~-~~r~~~iP~~~~~~l~~~~ 198 (204)
.+.+++|+.+.|+|+++ ++++++|++++||+|. ++||+++|+++++++..+.
T Consensus 83 ~~~~~~s~~~~~~i~~~--~~l~a~~~~~~V~v~~~~~kp~~~P~~~~~~l~~~~ 135 (137)
T COG0824 83 EELGGKSLTLGYEIVNE--DELLATGETTLVCVDLKTGKPVPLPPELREALEALA 135 (137)
T ss_pred EeecCeEEEEEEEEEeC--CEEEEEEEEEEEEEECCCCCcccCCHHHHHHHHHhh
Confidence 99999999999999984 4999999999999998 8999999999999998764
No 2
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=100.00 E-value=2.5e-31 Score=200.97 Aligned_cols=127 Identities=19% Similarity=0.312 Sum_probs=121.3
Q ss_pred ceEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEe
Q 028735 67 FHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISG 146 (204)
Q Consensus 67 ~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~ 146 (204)
.|..+++|+|+|||.+|||||++|++|+|+|+.++++.+|++..++.+.|.+|++++.+++|++|+++||+|.|+|++.+
T Consensus 2 ~f~~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v~t~v~~ 81 (130)
T PRK10800 2 LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKMTVEYYAPARLDDMLEVQSEITS 81 (130)
T ss_pred ceEEEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEEcCcccCCCEEEEEEEEEe
Confidence 47899999999999999999999999999999999999999988887889999999999999999999999999999999
Q ss_pred ecCeEEEEEEEEEEcCCCeEEEEEEEEEEEEeC-CCCccCCCHHHHHHH
Q 028735 147 GSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDK-NYRPVRIPPEMRSKI 194 (204)
Q Consensus 147 ~~~~~~~~~~~i~~~~dg~~~a~a~~~~V~vD~-~~r~~~iP~~~~~~l 194 (204)
++++++.+.+++++. +|+++++|+++||++|. ++|++++|+++++.|
T Consensus 82 ~~~~s~~~~~~i~~~-~g~~~a~~~~~~v~~d~~~~r~~~iP~~l~~~~ 129 (130)
T PRK10800 82 MRGTSLTFTQRIVNA-EGTLLNEAEVLIVCVDPLKMKPRALPKSIVAEF 129 (130)
T ss_pred eCcEEEEEEEEEEcC-CCeEEEEEEEEEEEEECCCCcCcCCCHHHHHhh
Confidence 999999999999974 89999999999999998 799999999999876
No 3
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=99.97 E-value=1.2e-29 Score=190.08 Aligned_cols=123 Identities=24% Similarity=0.423 Sum_probs=116.6
Q ss_pred eEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHh-hcCceEEEEEeeEEEeccCCCCCEEEEEEEEEe
Q 028735 68 HDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVA-RTGESLALSELSLKFLAPLRSGDKFVVKVRISG 146 (204)
Q Consensus 68 ~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~-~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~ 146 (204)
|+.+++|+|+|||.+|||||++|++|+++|+.++++++|++..++. +.|.+|++++.+++|++|+++||.|.|++++.+
T Consensus 1 f~~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v~~~v~~ 80 (126)
T TIGR02799 1 FRWPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQSALLEETGLVFVVRSMELDYLKPARLDDLLTVTTRVVE 80 (126)
T ss_pred CcceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCHHHHhhcCCcEEEEEEEEEEEcCcccCCCEEEEEEEEEe
Confidence 5678999999999999999999999999999999999999987774 569999999999999999999999999999999
Q ss_pred ecCeEEEEEEEEEEcCCCeEEEEEEEEEEEEeC-CCCccCCCHHHHH
Q 028735 147 GSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDK-NYRPVRIPPEMRS 192 (204)
Q Consensus 147 ~~~~~~~~~~~i~~~~dg~~~a~a~~~~V~vD~-~~r~~~iP~~~~~ 192 (204)
++++++.+.+++++ +|+++|+|.++||++|. ++|++++|+++++
T Consensus 81 ~~~~~~~~~~~i~~--~g~~~a~~~~~~v~vd~~~~~~~~~p~~~~~ 125 (126)
T TIGR02799 81 LKGASLVFAQEVRR--GDTLLCEATVEVACVDASDMRPRRLPAELRA 125 (126)
T ss_pred cCceEEEEEEEEEe--CCEEEEEEEEEEEEEECCCCcCcCCCHHHhh
Confidence 99999999999995 78999999999999998 8999999999976
No 4
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=99.96 E-value=3e-28 Score=181.36 Aligned_cols=119 Identities=32% Similarity=0.551 Sum_probs=102.1
Q ss_pred cccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEE
Q 028735 74 VRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLI 153 (204)
Q Consensus 74 Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~ 153 (204)
|+|+||| +|||||++|++|+++||.+|+.+.|+ ...+.+.|.++++++.+++|++|+++||++.|++++.+++++++.
T Consensus 1 Vr~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~~g~-~~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~~~~s~~ 78 (121)
T PF13279_consen 1 VRWSDTD-NGHVNNARYLRYFEEAREEFLEELGL-YDELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRVEEIGGKSFR 78 (121)
T ss_dssp --GGGB--TSSB-HHHHHHHHHHHHHHHHHHHTS-CHHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEEEEEESSEEE
T ss_pred CCHHHcc-CCeEcHHHHHHHHHHHHHHHHHhcch-hhHHHhcCceEEEEEEEEEEcccccCCCEEEEEEEEEEECCcEEE
Confidence 7999999 99999999999999999999999999 778888899999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCe--EEEEEEEEEEEEeCCCCccCCCHHHHHHH
Q 028735 154 FDHFIFKLPNHE--PILEAKGTAVWLDKNYRPVRIPPEMRSKI 194 (204)
Q Consensus 154 ~~~~i~~~~dg~--~~a~a~~~~V~vD~~~r~~~iP~~~~~~l 194 (204)
+.|++++..+|+ ++|+|.+++|++|.++++.++|++++++|
T Consensus 79 ~~~~i~~~~~g~~~~~a~~~~~~v~~d~~~r~~~~P~~~~~~l 121 (121)
T PF13279_consen 79 FEQEIFRPADGKGELAATGRTVMVFVDYKTRSVPIPDELREAL 121 (121)
T ss_dssp EEEEEEECSTTEEEEEEEEEEEEEEEETTTCE-B--HHHHHHH
T ss_pred EEEEEEEcCCCceEEEEEEEEEEEEEeCCCCcCCCCHHHHhcC
Confidence 999999844564 49999999999999558999999999986
No 5
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=99.95 E-value=2e-27 Score=175.09 Aligned_cols=116 Identities=23% Similarity=0.456 Sum_probs=108.3
Q ss_pred EEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCe
Q 028735 71 ELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGGSAV 150 (204)
Q Consensus 71 ~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~ 150 (204)
+++|+|+|||.+|||||++|++|+++|+.++++++|++..++.+.|.+|++++.+++|++|+++||.+.|++++.+++++
T Consensus 1 ~~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~~~~~~~ 80 (117)
T TIGR00051 1 PVRVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQSVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQIEELNGF 80 (117)
T ss_pred CEEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEEEecCcE
Confidence 36899999999999999999999999999999999998888888899999999999999999999999999999999999
Q ss_pred EEEEEEEEEEcCCCeEEEEEEEEEEEEeC-CCCccCCC
Q 028735 151 RLIFDHFIFKLPNHEPILEAKGTAVWLDK-NYRPVRIP 187 (204)
Q Consensus 151 ~~~~~~~i~~~~dg~~~a~a~~~~V~vD~-~~r~~~iP 187 (204)
++.+.|++++. +|++++.+.++||++|. ++|++++|
T Consensus 81 s~~~~~~i~~~-~~~~~~~~~~~~v~~d~~~~r~~~ip 117 (117)
T TIGR00051 81 SFVFSQEIFNE-DEALLKAATVIVVCVDPKKQKPVAIP 117 (117)
T ss_pred EEEEEEEEEeC-CCcEEEeeEEEEEEEECCCCeEcCCC
Confidence 99999999984 67777778777999998 79999987
No 6
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.93 E-value=3.5e-25 Score=201.32 Aligned_cols=137 Identities=19% Similarity=0.264 Sum_probs=126.2
Q ss_pred CCcceEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEE
Q 028735 64 MSEFHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVR 143 (204)
Q Consensus 64 m~~~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~ 143 (204)
+....+.+++|+++|||.+|||||++|++|||+|+.++++++|++...+. .|.+|++++.+|+|++|+++||.|.|+|+
T Consensus 342 ~~~~~~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~~~~~-~~~~~vvv~~~i~y~rp~~~gD~v~I~t~ 420 (495)
T PRK07531 342 SQPLRLVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGVDAAYVA-AGHSYYTVETHIRHLGEAKAGQALHVETQ 420 (495)
T ss_pred CCceEEEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCCCHHHHh-cCCcEEEEEEEEEEcccCCCCCEEEEEEE
Confidence 33445789999999999999999999999999999999999999876554 47899999999999999999999999999
Q ss_pred EEeecCeEEEEEEEEEEcCCCeEEEEEEEEEEEEeC-CCCccCCCHHHHHHHHhhhhhcC
Q 028735 144 ISGGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDK-NYRPVRIPPEMRSKIAQFLRQEE 202 (204)
Q Consensus 144 i~~~~~~~~~~~~~i~~~~dg~~~a~a~~~~V~vD~-~~r~~~iP~~~~~~l~~~~~~~~ 202 (204)
+.+++++++.+.|++++ .+|+++++|+++||++|. ++|++++|+++++.+.++...++
T Consensus 421 v~~~~~~s~~~~~~i~~-~~g~l~A~g~~~~v~vD~~trr~~~iP~e~r~~l~~~~~~~~ 479 (495)
T PRK07531 421 LLSGDEKRLHLFHTLYD-AGGELIATAEHMLLHVDLKAGKAVPAPAAVLAALKPIAEAHA 479 (495)
T ss_pred EEecCCcEEEEEEEEEC-CCCcEEEEEEEEEEEEECCCCccCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999997 589999999999999998 79999999999999998876654
No 7
>PLN02370 acyl-ACP thioesterase
Probab=99.91 E-value=3.6e-23 Score=183.02 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=134.2
Q ss_pred ccccCCchhhcccCCC----CCCcceEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCC------ChhhHhhcC
Q 028735 47 VRRCRSPAFLDLNGGK----GMSEFHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGI------NCDEVARTG 116 (204)
Q Consensus 47 ~~~~~~~~~~~~~~~~----~m~~~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~------~~~~l~~~g 116 (204)
.+|-||--+.|..|.. .| ..|+.+++|+++|||.+|.+....+++|+|++...|.+++|+ +..++.+.|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~-~~y~~~f~Ir~yEvD~~g~lsl~~L~n~lQd~A~~Hs~~lGll~~Gfg~~~~m~~~g 194 (419)
T PLN02370 116 WKPRRSDMLIDPFGIGRIVQDG-LVFRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRN 194 (419)
T ss_pred ccCCCCcccccccccCceeccC-cEEEEEEEEeeEEECCCCCCCHHHHHHHHHHHHHHHHHHhCccccccccHHHHHhCC
Confidence 3455565556655443 33 479999999999999999999999999999999999999997 556788899
Q ss_pred ceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEEcCCCeEEEEEEEEEEEEeC-CCCccCCCHHHHHHHH
Q 028735 117 ESLALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDK-NYRPVRIPPEMRSKIA 195 (204)
Q Consensus 117 ~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~~~dg~~~a~a~~~~V~vD~-~~r~~~iP~~~~~~l~ 195 (204)
.+|++++++|+|.+++++||+|.|+||+.++++.++.+.|+|++..+|+++++|.++||++|. ++|++++|+++++.+.
T Consensus 195 l~WVLtr~~I~~~R~P~~gD~V~V~Twv~~~~k~~~~Rdf~I~D~~~Ge~la~A~SvWV~mD~~TRRpvRIP~Evr~~i~ 274 (419)
T PLN02370 195 LIWVVTRMQVLVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVRDCKTGETLTRASSVWVMMNKLTRRLSKIPEEVRGEIE 274 (419)
T ss_pred ceEEEEEEEEEeCcCCCCCCEEEEEEEEeeCCCCEEEEEEEEEECCCCeEEEEEEEEEEEEECCCCcccCCCHHHHHhhh
Confidence 999999999999999999999999999999999999999999986679999999999999998 8999999999988877
Q ss_pred hhh
Q 028735 196 QFL 198 (204)
Q Consensus 196 ~~~ 198 (204)
.+.
T Consensus 275 ~y~ 277 (419)
T PLN02370 275 PYF 277 (419)
T ss_pred hcc
Confidence 663
No 8
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=99.87 E-value=1.2e-20 Score=135.44 Aligned_cols=110 Identities=33% Similarity=0.549 Sum_probs=103.7
Q ss_pred eEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEee
Q 028735 68 HDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGG 147 (204)
Q Consensus 68 ~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~ 147 (204)
|+.++.|+++|+|.+||+|++.|++|+++|+..++.+.|.+...+...+.+|++.+.+++|++|++.||+|.+++++.++
T Consensus 1 ~~~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~ 80 (110)
T cd00586 1 FTLEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRL 80 (110)
T ss_pred CcEEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCCEEEEEEEEEec
Confidence 46789999999999999999999999999999999999998777777889999999999999999999999999999999
Q ss_pred cCeEEEEEEEEEEcCCCeEEEEEEEEEEEEe
Q 028735 148 SAVRLIFDHFIFKLPNHEPILEAKGTAVWLD 178 (204)
Q Consensus 148 ~~~~~~~~~~i~~~~dg~~~a~a~~~~V~vD 178 (204)
++.++.+.++++++ +|+++++++++|+++|
T Consensus 81 ~~~~~~~~~~~~~~-~g~~~a~~~~~~~~~d 110 (110)
T cd00586 81 GRKSFTFEQEIFRE-DGELLATAETVLVCVD 110 (110)
T ss_pred CcEEEEEEEEEECC-CCeEEEEEEEEEEEeC
Confidence 99999999999974 7999999999999987
No 9
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=99.86 E-value=4.3e-21 Score=161.43 Aligned_cols=128 Identities=27% Similarity=0.341 Sum_probs=106.2
Q ss_pred ceEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhh------HhhcCceEEEEEeeEEEeccCCCCCEEEE
Q 028735 67 FHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDE------VARTGESLALSELSLKFLAPLRSGDKFVV 140 (204)
Q Consensus 67 ~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~------l~~~g~~~vv~~~~i~y~~~~~~gD~i~V 140 (204)
.|+.+++|+++|||.+|.+....+++|+|+++..+..++|++.+. +.+.|.+|+++++++++.+.+++||+|+|
T Consensus 3 ~y~~~~~v~~~e~d~~~~l~l~~l~~~~qe~a~~h~~~lG~~~~~~~~~~~l~~~~~~Wvl~r~~i~i~r~P~~~e~i~i 82 (261)
T PF01643_consen 3 VYEKEFTVRYYECDPNGRLKLSALLNYFQEAATEHAESLGFGMDYFGSTPELKKQGLAWVLSRYQIEIHRYPRWGEKITI 82 (261)
T ss_dssp -EEEEEE--GGGB-TTSBB-HHHHHHHHHHHHHHHHHHTT-SHHH------HHCTTEEEEEEEEEEEESS--BTT-EEEE
T ss_pred eEEEEEEEcceeeCCCCCCCHHHHHHHHHHHHHHHHHHhCCCcccchhhhhHhhcCcEEEEEEEEEEEEecCCCCCEEEE
Confidence 589999999999999999999999999999999999999999988 78899999999999999999999999999
Q ss_pred EEEEEeecCeEEEEEEEEEEcCCCeEEEEEEEEEEEEeC-CCCccCCCHHHHHHH
Q 028735 141 KVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDK-NYRPVRIPPEMRSKI 194 (204)
Q Consensus 141 ~t~i~~~~~~~~~~~~~i~~~~dg~~~a~a~~~~V~vD~-~~r~~~iP~~~~~~l 194 (204)
+||+.+.++......+.+++..+|+++++|.+.||++|. ++||+++|+++.+.+
T Consensus 83 ~Tw~~~~~~~~~~R~f~i~d~~~G~~l~~a~s~WvliD~~trr~~ri~~~~~~~~ 137 (261)
T PF01643_consen 83 ETWPSGFKRFFAYRDFEIYDAEDGELLARATSIWVLIDLETRRPVRIPEEIIEEY 137 (261)
T ss_dssp EEEEEEE-SSEEEEEEEEE--TTS-EEEEEEEEEEEEETTT-SEE---GGCTCCG
T ss_pred EEEeccCCCcEEEEEEEEEECCCCcEEEEEEEEEEEEEhhhCCcccCCHHHHhhh
Confidence 999999999988889999984589999999999999999 899999999887766
No 10
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.71 E-value=1.2e-15 Score=112.88 Aligned_cols=113 Identities=16% Similarity=0.137 Sum_probs=96.5
Q ss_pred cceEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEe-eEEEeccCCCCCEEEEEEEE
Q 028735 66 EFHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSEL-SLKFLAPLRSGDKFVVKVRI 144 (204)
Q Consensus 66 ~~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~-~i~y~~~~~~gD~i~V~t~i 144 (204)
..++.+++|+++++|..|++|++.|+.|+++++..++.... +...++... +++|++|++.||.+.+++++
T Consensus 6 ~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~---------~~~~~~~~~~~~~f~~p~~~gd~l~i~~~v 76 (123)
T cd03442 6 TELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHA---------GGRVVTASVDRIDFLKPVRVGDVVELSARV 76 (123)
T ss_pred cceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHh---------CCcEEEEEECceEEcCccccCcEEEEEEEE
Confidence 45789999999999999999999999999999877654321 112444455 79999999999999999999
Q ss_pred EeecCeEEEEEEEEEEcC----CCeEEEEEEEEEEEEeCCCCccCCC
Q 028735 145 SGGSAVRLIFDHFIFKLP----NHEPILEAKGTAVWLDKNYRPVRIP 187 (204)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~----dg~~~a~a~~~~V~vD~~~r~~~iP 187 (204)
.+.+++++.+++++++.. ++++++++..++|++|.++||.++|
T Consensus 77 ~~~g~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~v~~~~~~~~~~~p 123 (123)
T cd03442 77 VYTGRTSMEVGVEVEAEDPLTGERRLVTSAYFTFVALDEDGKPRPVP 123 (123)
T ss_pred EEecCCeEEEEEEEEEecCCCCcEEEEEEEEEEEEEECCCCCeeeCC
Confidence 999999999999999753 3579999999999999878888887
No 11
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=99.57 E-value=2.5e-14 Score=120.40 Aligned_cols=121 Identities=21% Similarity=0.254 Sum_probs=81.1
Q ss_pred eeeecccccccCCc-hhhcccC--------------------CCCCCcceEEEEEcccCCcccCCcccHHHHHHHHHHHH
Q 028735 40 VLRSLAAVRRCRSP-AFLDLNG--------------------GKGMSEFHDVELQVRDYELDQYGVVNNAVYASYCQHGR 98 (204)
Q Consensus 40 ~~~~~~~~~~~~~~-~~~~~~~--------------------~~~m~~~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar 98 (204)
+++|++++||+|.. .+.+.-+ .+.....+..+++||++|+|.||||||+.|++|+.++.
T Consensus 117 vliD~~trr~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~sDiD~N~HVNN~~Yl~w~~d~l 196 (261)
T PF01643_consen 117 VLIDLETRRPVRIPEEIIEEYGPFFPDELPEEDIRKLPKIPKNPPEEPEFEKEFTVRYSDIDMNGHVNNARYLDWALDAL 196 (261)
T ss_dssp EEEETTT-SEE---GGCTCCGGGGB----T-EESSS----------TTSECEEEE--GGGEETTTCE-HHHHHHHHHCCS
T ss_pred EEEEhhhCCcccCCHHHHhhhhhhcccccccccccccccccccCChhhheeecccccHHHCCCCCCcCHHHHHHHHHHhC
Confidence 67899999999943 2222111 00113356789999999999999999999999998875
Q ss_pred HHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEee-cCeEEEEEEEEEEcCCCeEEEEEEEEE
Q 028735 99 HEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGG-SAVRLIFDHFIFKLPNHEPILEAKGTA 174 (204)
Q Consensus 99 ~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~-~~~~~~~~~~i~~~~dg~~~a~a~~~~ 174 (204)
..- .+. ...+.+.+|.|++++++||.|.+.+.+... +...+.+.|.|.++ +|+.+|++++.|
T Consensus 197 p~~---------~~~----~~~~~~i~I~y~~E~~~gd~i~~~~~~~~~~~~~~~~~~h~i~~~-~g~~~~~~~~~W 259 (261)
T PF01643_consen 197 PEE---------FLE----KYQIKSIDINYKKEIRYGDTITSYTEVEKDEEEDGLSTLHEIRNE-DGEEVARARTEW 259 (261)
T ss_dssp -HH---------HHC----CEEEEEEEEEE-S--BTT-EEEEEEEEEEECCTTEEEEEEEEECT--TCEEEEEEEEE
T ss_pred cch---------hhc----cCCcEEEEEEEccccCCCCEEEEEEEEcccccCCceEEEEEEEcC-CCceEEEEEEEE
Confidence 431 111 246899999999999999999999987533 34457789999885 499999999998
No 12
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=99.50 E-value=4.9e-13 Score=91.32 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=71.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEEc
Q 028735 82 YGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKL 161 (204)
Q Consensus 82 ~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~~ 161 (204)
+|+||++.|+.|+|+|+..++...+.+ +...++.+.+++|++|++.||.+.+++++.+.+++++.++++++++
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~-------~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~~~v~~~ 73 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGD-------GRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVEVEVYSE 73 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSS-------TEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEEEEEEET
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccC-------CcceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEEEEEEEC
Confidence 699999999999999999999998764 5678999999999999999999999999999999999999999984
Q ss_pred CCCeEEE
Q 028735 162 PNHEPIL 168 (204)
Q Consensus 162 ~dg~~~a 168 (204)
+++++|
T Consensus 74 -~~~~~~ 79 (79)
T PF03061_consen 74 -DGRLCA 79 (79)
T ss_dssp -TSCEEE
T ss_pred -CCcEEC
Confidence 677665
No 13
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=99.42 E-value=1e-12 Score=106.64 Aligned_cols=126 Identities=11% Similarity=0.089 Sum_probs=112.0
Q ss_pred EEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcC-CChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEee
Q 028735 69 DVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIG-INCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGG 147 (204)
Q Consensus 69 ~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G-~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~ 147 (204)
...+.|.+++-|..|++.-+..+++..+++...-..+| ++...+.+.+..|+|.++.+++.+++.+||.+++++|...+
T Consensus 5 k~~~~vP~~~~d~~g~i~~~~~l~l~~~i~~~Qsi~lg~~~~~~lee~~l~WiV~~~~i~~ir~pef~e~iti~t~~~s~ 84 (250)
T COG3884 5 KQNMPVPFYWPDAVGDIDITSRLRLDLQIRGIQSIGLGQLDVAGLEEYHLLWIVRRTEIDVIRPPEFGEMITIETWCSSI 84 (250)
T ss_pred hhcCCCccchhhhcCCcchhhhhhhhhhhcceeecccchhhhhhHhhcCceEEEEEEEEEEeeccccCCcceEEEeeccc
Confidence 34567779999999999999999999999876555555 33345677899999999999999999999999999999999
Q ss_pred cCeEEEEEEEEEEcCCCeEEEEEEEEEEEEeC-CCCccCCCHHHHHHHHh
Q 028735 148 SAVRLIFDHFIFKLPNHEPILEAKGTAVWLDK-NYRPVRIPPEMRSKIAQ 196 (204)
Q Consensus 148 ~~~~~~~~~~i~~~~dg~~~a~a~~~~V~vD~-~~r~~~iP~~~~~~l~~ 196 (204)
++..+..++++.+ .|+.+.+..+.|+++|+ +++|.++++++.+.+..
T Consensus 85 ~~ffcyrrf~~~~--~gg~Lie~~a~wilmn~dTrkp~ri~~d~la~~~~ 132 (250)
T COG3884 85 SNFFCYRRFRLDG--RGGGLIEIEAFWILMNRDTRKPARITDDLLAPFNL 132 (250)
T ss_pred cceEEEEEEEEec--CCCcEEEEEEEEEEEccccccceeccHHHhhhhcc
Confidence 9999999999987 78999999999999999 89999999999988763
No 14
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=99.40 E-value=1.7e-11 Score=82.98 Aligned_cols=98 Identities=18% Similarity=0.273 Sum_probs=88.3
Q ss_pred EEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEeec
Q 028735 69 DVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGGS 148 (204)
Q Consensus 69 ~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~ 148 (204)
....+|+++|+|.++++|++.|+.|++.++..++...+. .+..+++.+.+++|++|++.||.+.+++++.+.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~ 74 (100)
T cd03440 2 VLRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGG-------RGLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVG 74 (100)
T ss_pred EEEEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhcc-------CCCeEEEEEEEeEEecCCCCCCEEEEEEEEEecc
Confidence 357899999999999999999999999999999887764 4567899999999999999999999999999999
Q ss_pred CeEEEEEEEEEEcCCCeEEEEEEEEE
Q 028735 149 AVRLIFDHFIFKLPNHEPILEAKGTA 174 (204)
Q Consensus 149 ~~~~~~~~~i~~~~dg~~~a~a~~~~ 174 (204)
+..+.+...+++. +|++++.+..++
T Consensus 75 ~~~~~~~~~~~~~-~~~~~~~~~~~~ 99 (100)
T cd03440 75 RSSVTVEVEVRNE-DGKLVATATATF 99 (100)
T ss_pred ccEEEEEEEEECC-CCCEEEEEEEEe
Confidence 9988889998874 699999997765
No 15
>PLN02370 acyl-ACP thioesterase
Probab=99.36 E-value=5.6e-12 Score=112.05 Aligned_cols=124 Identities=16% Similarity=0.170 Sum_probs=84.6
Q ss_pred eeeecccccccC-Cchh---hccc-----------CCC--CCCc----ceEEEEEcccCCcccCCcccHHHHHHHHHHHH
Q 028735 40 VLRSLAAVRRCR-SPAF---LDLN-----------GGK--GMSE----FHDVELQVRDYELDQYGVVNNAVYASYCQHGR 98 (204)
Q Consensus 40 ~~~~~~~~~~~~-~~~~---~~~~-----------~~~--~m~~----~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar 98 (204)
++++.+++||+| |..+ +..- ..+ .... .....++|||+|+|.||||||+.|+.|+.++.
T Consensus 253 V~mD~~TRRpvRIP~Evr~~i~~y~~~~~~~i~~~~~kl~~l~~~~~~~~~~~~~VRysDLD~NgHVNNvkYi~Wild~l 332 (419)
T PLN02370 253 VMMNKLTRRLSKIPEEVRGEIEPYFLNSDPVVNEDSRKLPKLDDKTADYIRKGLTPRWSDLDVNQHVNNVKYIGWILESA 332 (419)
T ss_pred EEEECCCCcccCCCHHHHHhhhhcccccccccccccccCCccccccccceeeeeeecHHHCcccCccccHHHHHHHHhhC
Confidence 677889999999 4443 1111 001 1111 23355899999999999999999999998875
Q ss_pred HHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEee------cCeEEEEEEEEEEcCCCeEEEEEEE
Q 028735 99 HEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGG------SAVRLIFDHFIFKLPNHEPILEAKG 172 (204)
Q Consensus 99 ~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~------~~~~~~~~~~i~~~~dg~~~a~a~~ 172 (204)
.. +.+. ...+.+++|+|++++++||.|.+.+...+. +.....+.|.+. ..+|+.++++++
T Consensus 333 P~---------e~l~----~~~l~~i~I~Y~kE~~~gd~V~s~~~~~~~~~~~~~~~~~~~~~h~~~-~~dG~e~a~a~t 398 (419)
T PLN02370 333 PP---------PIME----SHELAAITLEYRRECGRDSVLQSLTAVSGTGIGNLGTAGDVECQHLLR-LEDGAEIVRGRT 398 (419)
T ss_pred ch---------hhhh----cceEEEEEEEEcccCCCCCEEEEEEeecccccccccCCCcceEEEEEE-cCCCeEEEEEEE
Confidence 31 1111 135789999999999999999988875321 111123444443 468999999999
Q ss_pred EEEEE
Q 028735 173 TAVWL 177 (204)
Q Consensus 173 ~~V~v 177 (204)
.|---
T Consensus 399 ~Wr~~ 403 (419)
T PLN02370 399 EWRPK 403 (419)
T ss_pred EEEEC
Confidence 99754
No 16
>PRK10694 acyl-CoA esterase; Provisional
Probab=99.35 E-value=9.1e-11 Score=89.31 Aligned_cols=113 Identities=15% Similarity=0.119 Sum_probs=93.3
Q ss_pred ceEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEe-eEEEeccCCCCCEEEEEEEEE
Q 028735 67 FHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSEL-SLKFLAPLRSGDKFVVKVRIS 145 (204)
Q Consensus 67 ~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~-~i~y~~~~~~gD~i~V~t~i~ 145 (204)
.....+.|...|+|.+|.++.+..++|++++..-...... +..++++.. .++|++|++.||.+.+++++.
T Consensus 11 ~~~~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~~---------~~~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~ 81 (133)
T PRK10694 11 ELVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIA---------HGRVVTVRVEGMTFLRPVAVGDVVCCYARCV 81 (133)
T ss_pred ceEEEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHHc---------CCceEEEEECceEECCCcccCcEEEEEEEEE
Confidence 3556788999999999999999999999998664443322 223667777 779999999999999999999
Q ss_pred eecCeEEEEEEEEEEcC-------CCeEEEEEEEEEEEEeCCCCccCCCH
Q 028735 146 GGSAVRLIFDHFIFKLP-------NHEPILEAKGTAVWLDKNYRPVRIPP 188 (204)
Q Consensus 146 ~~~~~~~~~~~~i~~~~-------dg~~~a~a~~~~V~vD~~~r~~~iP~ 188 (204)
..+++++.++.+++.+. ..+.+++|..++|.+|.+++|.++|+
T Consensus 82 ~~g~sS~~v~v~v~~~~~~~~~~g~~~~~~~~~~tfVavd~~g~p~~vp~ 131 (133)
T PRK10694 82 KTGTTSISINIEVWVKKVASEPIGQRYKATEALFTYVAVDPEGKPRALPV 131 (133)
T ss_pred EccCceEEEEEEEEEeecccCCCCcEEEEEEEEEEEEEECCCCCEEeCCC
Confidence 99999999999988521 12467899999999999999999985
No 17
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=99.32 E-value=9.2e-11 Score=91.14 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=96.2
Q ss_pred ceEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEE-eeEEEeccCCCCCEEEEEEEEE
Q 028735 67 FHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSE-LSLKFLAPLRSGDKFVVKVRIS 145 (204)
Q Consensus 67 ~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~-~~i~y~~~~~~gD~i~V~t~i~ 145 (204)
.-.....|-+.|+|.+|.++.+..+.|++++..-...+.. .| ..++.. -+++|.+|++.||.|.+.+++.
T Consensus 13 ~~~~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a--------~~-~vVTasvd~v~F~~Pv~vGd~v~~~a~v~ 83 (157)
T COG1607 13 ELVLRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHA--------GG-RVVTASVDSVDFKKPVRVGDIVCLYARVV 83 (157)
T ss_pred eeEEEEEecCCccCcccccccHHHHHHHHHHHHHHHHHHh--------CC-eEEEEEeceEEEccccccCcEEEEEEEEe
Confidence 3457889999999999999999999999998764333321 12 244444 4899999999999999999999
Q ss_pred eecCeEEEEEEEEEEc----CCCeEEEEEEEEEEEEeCCCCccCCCHHHHHH
Q 028735 146 GGSAVRLIFDHFIFKL----PNHEPILEAKGTAVWLDKNYRPVRIPPEMRSK 193 (204)
Q Consensus 146 ~~~~~~~~~~~~i~~~----~dg~~~a~a~~~~V~vD~~~r~~~iP~~~~~~ 193 (204)
..|++|+.+..+++.+ ...+.+++|..++|.+|.+|||.++|+...+.
T Consensus 84 ~~GrTSm~V~Vev~~~~~~~~~~~~~t~~~ft~VAvd~~gkP~~vp~~~~~~ 135 (157)
T COG1607 84 YTGRTSMEVGVEVWAEDIRSGERRLATSAYFTFVAVDEDGKPTPVPREEPET 135 (157)
T ss_pred ecCcccEEEEEEEEEecccCCcceEeeeEEEEEEEECCCCCcccCCccCCcc
Confidence 9999999999999875 22367889999999999999999999755443
No 18
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=99.28 E-value=3.2e-10 Score=82.46 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=88.9
Q ss_pred ceEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEe
Q 028735 67 FHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISG 146 (204)
Q Consensus 67 ~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~ 146 (204)
..+.++.+.+.++|..|++|++.|..|++.+...++...+- .+...++.+.+++|++|++. +.+.+++++.+
T Consensus 13 ~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~-------~~~~~~~~~~~i~f~~p~~~-~~v~~~~~v~~ 84 (113)
T cd03443 13 RVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALP-------PGALAVTVDLNVNYLRPARG-GDLTARARVVK 84 (113)
T ss_pred eEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhccC-------CCCceEEEEEEEeEEcCCCC-CeEEEEEEEEe
Confidence 47789999999999999999999999999999887766531 24457899999999999999 99999999999
Q ss_pred ecCeEEEEEEEEEEcCCCeEEEEEEEEEE
Q 028735 147 GSAVRLIFDHFIFKLPNHEPILEAKGTAV 175 (204)
Q Consensus 147 ~~~~~~~~~~~i~~~~dg~~~a~a~~~~V 175 (204)
.+++++.++.+++++ +|+++++|..+|+
T Consensus 85 ~g~~~~~~~~~~~~~-~~~~~a~a~~~~~ 112 (113)
T cd03443 85 LGRRLAVVEVEVTDE-DGKLVATARGTFA 112 (113)
T ss_pred cCceEEEEEEEEECC-CCCEEEEEEEEEe
Confidence 999999999999974 6999999998875
No 19
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=99.07 E-value=6.9e-10 Score=90.33 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=83.1
Q ss_pred eeeecccccccCC-chhhcccCCC---------C-----CCcceEEEEEcccCCcccCCcccHHHHHHHHHHHHH-HHHH
Q 028735 40 VLRSLAAVRRCRS-PAFLDLNGGK---------G-----MSEFHDVELQVRDYELDQYGVVNNAVYASYCQHGRH-EFFE 103 (204)
Q Consensus 40 ~~~~~~~~~~~~~-~~~~~~~~~~---------~-----m~~~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~-~~l~ 103 (204)
+.++-+|++|+|- ..+..+-+.+ + ........+.||+.|+|.||||||+.|+.|+.+-.. +++.
T Consensus 110 ilmn~dTrkp~ri~~d~la~~~~t~~~k~~r~~~~l~~~~e~s~~~~f~vR~~DID~f~HvNNskY~~wi~e~l~~~~~~ 189 (250)
T COG3884 110 ILMNRDTRKPARITDDLLAPFNLTTEKKRLRWPKYLSSRLEASEIHDFPVRYTDIDMFGHVNNSKYWSWIEEVLGSEFLK 189 (250)
T ss_pred EEEccccccceeccHHHhhhhcccchhheeccccccCccccccccccceeEEEeeccccccccceehHHHHHHHhhhhHh
Confidence 4556778999983 3343322211 2 233667799999999999999999999999998765 4444
Q ss_pred HcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEEcCCCeEEEEEEEEE
Q 028735 104 RIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTA 174 (204)
Q Consensus 104 ~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~~~dg~~~a~a~~~~ 174 (204)
..| ..+..++|.+|+.+||+|++.+.+...+.+ +++-. ||.+.+-+..+|
T Consensus 190 ~~~--------------p~r~~l~y~keva~G~~iti~~e~~~~~s~-----~~f~~--d~~v~~lt~i~~ 239 (250)
T COG3884 190 LYG--------------PLRLTLEYVKEVAPGEKITIVYEVHPLESK-----HQFTS--DGQVNALTYIVG 239 (250)
T ss_pred hcc--------------cceeEEEEEcccCCCCeEEEEEEEcccCce-----eeecC--CcceEEEEEEEe
Confidence 443 378899999999999999999988877654 33332 777777666665
No 20
>KOG4366 consensus Predicted thioesterase [General function prediction only]
Probab=98.89 E-value=3.7e-10 Score=88.85 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=105.7
Q ss_pred EEEEEcccCCcccCC-cccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEee
Q 028735 69 DVELQVRDYELDQYG-VVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGG 147 (204)
Q Consensus 69 ~~~~~Vr~~D~D~~G-hVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~ 147 (204)
+.+..+-..|+|..- |+||++|++=++-||.+|+..+|+ +..+.+.+...+.....++|+++++..+.+.|.+++..|
T Consensus 52 t~~g~cls~dlDtll~HmnNArYfrElDfAR~~~~~r~~l-~~~lr~~~~~~v~~As~~ryrr~Irpfh~y~v~sRiI~W 130 (213)
T KOG4366|consen 52 TNEGLCLSTDLDTLLSHMNNARYFRELDFARVNFYCRTGL-YLMLRSKRGPYVQGASVFRYRREIRPFHPYSVSSRIICW 130 (213)
T ss_pred eecceeecchHHHHHHHhhhhHHHHHhhHHHHHHHHHHhH-HHHHHhcCCCeeechhhhhhhhhcCCCCccceeeEEEEE
Confidence 345566668999766 999999999999999999999986 556667777888899999999999999999999999999
Q ss_pred cCeEEEEEEEEEEcCCCeEEEEEEEEEEEEeC-------------CCCccCCCHHHHHHHH
Q 028735 148 SAVRLIFDHFIFKLPNHEPILEAKGTAVWLDK-------------NYRPVRIPPEMRSKIA 195 (204)
Q Consensus 148 ~~~~~~~~~~i~~~~dg~~~a~a~~~~V~vD~-------------~~r~~~iP~~~~~~l~ 195 (204)
+++++.+++.+....||-+++-+.+..+..|. +.++..+|++....+.
T Consensus 131 Dekaiyle~rFv~~sd~fvcala~~kq~l~dts~~~v~~e~c~~~~e~~ae~ped~~~~ls 191 (213)
T KOG4366|consen 131 DEKAIYLESRFVILSDGFVCALALTKQVLKDTSKEKVALELCPRTNEKRAEIPEDLLKWLS 191 (213)
T ss_pred chhhhhhhhheeeccCceEeehHHHHHHHhcCCHHHHHHHHhhhhccCcccCChHHHhhcc
Confidence 99999998888887899999999998888772 1234467777666654
No 21
>PLN02647 acyl-CoA thioesterase
Probab=98.77 E-value=3.9e-07 Score=81.79 Aligned_cols=114 Identities=10% Similarity=0.010 Sum_probs=88.6
Q ss_pred EcccCCcccCCcccHHHHHHHHHHHHHHHHHH-cCCChhhHhhcCceEEEEEe-eEEEeccCCCCCEEEEEEEEEeecCe
Q 028735 73 QVRDYELDQYGVVNNAVYASYCQHGRHEFFER-IGINCDEVARTGESLALSEL-SLKFLAPLRSGDKFVVKVRISGGSAV 150 (204)
Q Consensus 73 ~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~-~G~~~~~l~~~g~~~vv~~~-~i~y~~~~~~gD~i~V~t~i~~~~~~ 150 (204)
.++..++|.+|.+..+..+.|+|.+..-.... ++-+ + ........+++.. +++|++|++.||.|.+..++...|++
T Consensus 99 ~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~rh~~~~-~-~~~~p~~vVTAsVD~i~F~~Pi~~g~~v~l~g~Vt~vGrS 176 (437)
T PLN02647 99 ILREQYRNPWNEVRIGKLLEDLDALAGTISVKHCSDD-D-STTRPLLLVTASVDKIVLKKPIRVDVDLKIVGAVTWVGRS 176 (437)
T ss_pred hhchhhcCCCCcEeHhHHHHHHHHHHHHHHHHHhCCC-c-ccCCcceEEEEEECcEEEcCCCcCCcEEEEEEEEEEecCC
Confidence 57777799999999999999999876654433 3221 0 1111223555555 89999999999999999999999999
Q ss_pred EEEEEEEEEEcC------CCeEEEEEEEEEEEEeC-CCCccCCCH
Q 028735 151 RLIFDHFIFKLP------NHEPILEAKGTAVWLDK-NYRPVRIPP 188 (204)
Q Consensus 151 ~~~~~~~i~~~~------dg~~~a~a~~~~V~vD~-~~r~~~iP~ 188 (204)
|+.+..+++.+. +...+++|..++|.+|. +|+|.++|+
T Consensus 177 SMEV~v~V~~~~~~~~~~~~~~~~~a~FtfVA~D~~~gkp~pVp~ 221 (437)
T PLN02647 177 SMEIQLEVIQPTKDESNTSDSVALTANFTFVARDSKTGKSAPVNR 221 (437)
T ss_pred eEEEEEEEEEccccCCCCcEEEEEEEEEEEEEEcCCCCCeeeCCC
Confidence 999988888642 23579999999999998 899888763
No 22
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=98.74 E-value=5e-07 Score=66.48 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=81.4
Q ss_pred eEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEee
Q 028735 68 HDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGG 147 (204)
Q Consensus 68 ~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~ 147 (204)
...++.++..+++..|.++.+.++.++|.+....... .+...+..+.+++|++|++.||.+.+++++.+.
T Consensus 16 ~~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~----------~~~~~~t~~~~i~f~rp~~~G~~l~~~a~v~~~ 85 (114)
T TIGR02286 16 ARVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNS----------YGDAAVAAQCTIDFLRPGRAGERLEAEAVEVSR 85 (114)
T ss_pred EEEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcC----------CCCceEEEEEEEEEecCCCCCCEEEEEEEEEEe
Confidence 4568889999999999999999999999985422211 122246789999999999999999999999999
Q ss_pred cCeEEEEEEEEEEcCCCeEEEEEEEEEE
Q 028735 148 SAVRLIFDHFIFKLPNHEPILEAKGTAV 175 (204)
Q Consensus 148 ~~~~~~~~~~i~~~~dg~~~a~a~~~~V 175 (204)
+++...++-++++ .+|+++|.++.+|-
T Consensus 86 g~~~~~~~~~i~~-~~~~~va~~~~t~~ 112 (114)
T TIGR02286 86 GGRTGTYDVEVVN-QEGELVALFRGTSR 112 (114)
T ss_pred CCcEEEEEEEEEc-CCCCEEEEEEEEEE
Confidence 9988888899997 58999999999875
No 23
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=98.72 E-value=6.8e-07 Score=65.98 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=82.2
Q ss_pred eEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEee
Q 028735 68 HDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGG 147 (204)
Q Consensus 68 ~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~ 147 (204)
-+.++.+....+|..|.++.+....++|.+........ . ..+...+..+.+++|++|++.| .+.+++++.+.
T Consensus 18 ~~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~-~------~~~~~~vt~~l~i~f~~p~~~g-~l~a~a~v~~~ 89 (117)
T TIGR00369 18 LEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLC-N------SGGQAVVGLELNANHLRPAREG-KVRAIAQVVHL 89 (117)
T ss_pred EEEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHhh-c------CCCceEEEEEEEeeeccccCCC-EEEEEEEEEec
Confidence 46788899999999999999999999998873222111 1 1234578889999999999999 99999999999
Q ss_pred cCeEEEEEEEEEEcCCCeEEEEEEEEEE
Q 028735 148 SAVRLIFDHFIFKLPNHEPILEAKGTAV 175 (204)
Q Consensus 148 ~~~~~~~~~~i~~~~dg~~~a~a~~~~V 175 (204)
+++...++-+++++ +|+++|+++.++.
T Consensus 90 gr~~~~~~~~i~~~-~g~~va~~~~t~~ 116 (117)
T TIGR00369 90 GRQTGVAEIEIVDE-QGRLCALSRGTTA 116 (117)
T ss_pred CceEEEEEEEEECC-CCCEEEEEEEEEc
Confidence 99988889999984 8999999998863
No 24
>PRK10254 thioesterase; Provisional
Probab=98.54 E-value=9.2e-06 Score=62.09 Aligned_cols=102 Identities=13% Similarity=0.113 Sum_probs=85.0
Q ss_pred ceEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEe
Q 028735 67 FHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISG 146 (204)
Q Consensus 67 ~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~ 146 (204)
.-+.++.++...+++.|.+|.+.++..+|.|..-...... ..|...+..+.+++|++|++-| .+..+..+.+
T Consensus 35 ~~~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~~-------~~g~~~vTiel~in~Lrp~~~g-~l~a~a~vi~ 106 (137)
T PRK10254 35 VLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMT-------RDGQCVVGTELNATHHRPVSEG-KVRGVCQPLH 106 (137)
T ss_pred EEEEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhhC-------CCCCeEEEEEEEeEEeccCcCC-eEEEEEEEEe
Confidence 4578899999999999999999999999987542222110 1356789999999999999877 7999999999
Q ss_pred ecCeEEEEEEEEEEcCCCeEEEEEEEEEEEE
Q 028735 147 GSAVRLIFDHFIFKLPNHEPILEAKGTAVWL 177 (204)
Q Consensus 147 ~~~~~~~~~~~i~~~~dg~~~a~a~~~~V~v 177 (204)
.|++....+-++++ .+|+++|.++.+...+
T Consensus 107 ~Gr~~~v~~~~v~d-~~g~l~a~~~~t~~i~ 136 (137)
T PRK10254 107 LGRQNQSWEIVVFD-EQGRRCCTCRLGTAVL 136 (137)
T ss_pred cCcCEEEEEEEEEc-CCCCEEEEEEEEEEEe
Confidence 99998889999998 4899999999987654
No 25
>PRK10293 acyl-CoA esterase; Provisional
Probab=98.53 E-value=6.2e-06 Score=62.96 Aligned_cols=101 Identities=8% Similarity=0.012 Sum_probs=83.8
Q ss_pred ceEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEe
Q 028735 67 FHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISG 146 (204)
Q Consensus 67 ~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~ 146 (204)
.-+.++.|+...+++.|.+|.+.++..+|.+..-.....- ..+...+..+.+++|.+|++-| .+..+.++.+
T Consensus 35 ~~~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~~-------~~~~~~vTiel~infl~p~~~g-~l~a~a~vv~ 106 (136)
T PRK10293 35 TLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCT-------EGEQKVVGLEINANHVRSAREG-RVRGVCKPLH 106 (136)
T ss_pred EEEEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHhcc-------cCCceEEEEEEEeEEecccCCc-eEEEEEEEEe
Confidence 4568899999999999999999999999987532222211 1244678999999999999987 6999999999
Q ss_pred ecCeEEEEEEEEEEcCCCeEEEEEEEEEEE
Q 028735 147 GSAVRLIFDHFIFKLPNHEPILEAKGTAVW 176 (204)
Q Consensus 147 ~~~~~~~~~~~i~~~~dg~~~a~a~~~~V~ 176 (204)
.+++....+-+++++ +|+++|.++.++..
T Consensus 107 ~Gr~~~~~~~~v~d~-~g~l~A~~~~t~~i 135 (136)
T PRK10293 107 LGSRHQVWQIEIFDE-KGRLCCSSRLTTAI 135 (136)
T ss_pred cCCCEEEEEEEEEeC-CCCEEEEEEEEEEE
Confidence 999988889999984 89999999999865
No 26
>PRK11688 hypothetical protein; Provisional
Probab=98.48 E-value=6.3e-06 Score=64.02 Aligned_cols=106 Identities=12% Similarity=0.123 Sum_probs=81.9
Q ss_pred eEEEEEcccCCcc--cCCcccHHHHHHHHHHHHHHHHHHc-CCCh-----hhHhhcCceEEEEEeeEEEeccCCCCCEEE
Q 028735 68 HDVELQVRDYELD--QYGVVNNAVYASYCQHGRHEFFERI-GINC-----DEVARTGESLALSELSLKFLAPLRSGDKFV 139 (204)
Q Consensus 68 ~~~~~~Vr~~D~D--~~GhVnn~~Yl~~~e~ar~~~l~~~-G~~~-----~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~ 139 (204)
-+.+++++...++ ..|.+|.+.+...+|.+........ +... +.........+..+++++|++|.+ |+.+.
T Consensus 39 ~~~~l~~~~~~~~n~~~G~vHGG~i~tl~D~a~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l~i~fl~p~~-g~~l~ 117 (154)
T PRK11688 39 VELSFKMQPELVGNIAQSILHGGVIASVLDVAGGLVCVGGILARHEDISEEELRQRLSRLGTIDLRVDYLRPGR-GERFT 117 (154)
T ss_pred EEEEeeCCHHHcCCCCcCeeeHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceEEEEEEEeeccCC-CCeEE
Confidence 4577888888885 6899999999999998875443322 1110 111112234678999999999996 99999
Q ss_pred EEEEEEeecCeEEEEEEEEEEcCCCeEEEEEEEEEE
Q 028735 140 VKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAV 175 (204)
Q Consensus 140 V~t~i~~~~~~~~~~~~~i~~~~dg~~~a~a~~~~V 175 (204)
++.++.+.+++...++-+++++ +|+++|++..++.
T Consensus 118 a~a~v~~~g~r~~~~~~~i~~~-~g~lvA~a~~t~~ 152 (154)
T PRK11688 118 ATSSVLRAGNKVAVARMELHNE-QGVHIASGTATYL 152 (154)
T ss_pred EEEEEEEccCCEEEEEEEEECC-CCCEEEEEEEEEE
Confidence 9999999999888889999974 7999999999885
No 27
>PLN02322 acyl-CoA thioesterase
Probab=98.38 E-value=3.2e-05 Score=60.26 Aligned_cols=104 Identities=14% Similarity=0.071 Sum_probs=84.8
Q ss_pred ceEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEe
Q 028735 67 FHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISG 146 (204)
Q Consensus 67 ~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~ 146 (204)
....+..|+...++..|.+|.+.+...+|.|.. +...+. ..+...+..+.+++|++|++.||.+..+.++..
T Consensus 27 ~~~~~m~v~~~~~N~~G~vHGGv~atLaDta~g-~A~~~~-------~~~~~~vTiel~infLrpa~~G~~L~Aea~vv~ 98 (154)
T PLN02322 27 RVTGRLPVSPMCCQPFKVLHGGVSALIAESLAS-LGAHMA-------SGFKRVAGIQLSINHLKSADLGDLVFAEATPVS 98 (154)
T ss_pred EEEEEEECCHHHcCCCCCccHHHHHHHHHHHHH-HHHhhc-------cCCCceEEEEEEEEEeccCCCCCEEEEEEEEEe
Confidence 356788999999999999999999999997653 211111 122347899999999999999999999999999
Q ss_pred ecCeEEEEEEEEEEcC-----CCeEEEEEEEEEEEEe
Q 028735 147 GSAVRLIFDHFIFKLP-----NHEPILEAKGTAVWLD 178 (204)
Q Consensus 147 ~~~~~~~~~~~i~~~~-----dg~~~a~a~~~~V~vD 178 (204)
.+++....+-++++.. +|++++.++.+..++.
T Consensus 99 ~Gr~~~~~ev~V~~~~~~~~~~~~lva~a~~T~~~~~ 135 (154)
T PLN02322 99 TGKTIQVWEVKLWKTTDKDKANKILISSSRVTLICNL 135 (154)
T ss_pred cCCCEEEEEEEEEECCCCcccCCeEEEEEEEEEEEcc
Confidence 9999888899999841 3799999999987654
No 28
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.37 E-value=2.7e-05 Score=59.46 Aligned_cols=105 Identities=17% Similarity=0.153 Sum_probs=87.1
Q ss_pred ceEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEe
Q 028735 67 FHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISG 146 (204)
Q Consensus 67 ~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~ 146 (204)
.-+.++.+....++..|.+|.+.++..+|.+..-......- .+...+..+.+++|.+|.+.|+ +..+.++.+
T Consensus 35 ~~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~-------~~~~~~ti~l~i~flr~~~~g~-v~a~a~v~~ 106 (141)
T COG2050 35 EAEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLG-------VVALAVTLELNINFLRPVKEGD-VTAEARVLH 106 (141)
T ss_pred eEEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccC-------ccceeEEEEEEehhccCCCCCe-EEEEEEEEe
Confidence 45678888888999999999999999999987655444321 1223478999999999999999 999999999
Q ss_pred ecCeEEEEEEEEEEcCCCeEEEEEEEEEEEEeC
Q 028735 147 GSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDK 179 (204)
Q Consensus 147 ~~~~~~~~~~~i~~~~dg~~~a~a~~~~V~vD~ 179 (204)
.+++....+-++++...|+++|++..++...+.
T Consensus 107 ~G~~~~v~~i~v~~~~~~~lva~~~~t~~v~~~ 139 (141)
T COG2050 107 LGRRVAVVEIEVKNDEGGRLVAKGTGTYAVLRK 139 (141)
T ss_pred eCCEEEEEEEEEEECCCCeEEEEEEEEEEEecC
Confidence 999887788899975567999999999988754
No 29
>PLN02647 acyl-CoA thioesterase
Probab=98.22 E-value=9.2e-05 Score=66.68 Aligned_cols=118 Identities=10% Similarity=-0.068 Sum_probs=85.7
Q ss_pred CCC-cceEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEE
Q 028735 63 GMS-EFHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVK 141 (204)
Q Consensus 63 ~m~-~~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~ 141 (204)
.|. ...+....+...|.|.+|.++.+..++|++++..-..... ..+....+.--+++|++|++.||.|.++
T Consensus 285 ~m~dT~~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r~--------a~~~~vt~svd~v~F~~PV~vGdil~l~ 356 (437)
T PLN02647 285 LIRDTRLENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYAF--------AGLRPYFLEVDHVDFLRPVDVGDFLRFK 356 (437)
T ss_pred eccccceEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHHH--------cCCceEEEEecceEecCccccCcEEEEE
Confidence 443 3456778899999999999999999999998765332221 1233345555699999999999999998
Q ss_pred EEEEeecC-----eEEEEEEEEE--Ec--CCCeEEEEEEEEEEEEeC--CCCccCCCH
Q 028735 142 VRISGGSA-----VRLIFDHFIF--KL--PNHEPILEAKGTAVWLDK--NYRPVRIPP 188 (204)
Q Consensus 142 t~i~~~~~-----~~~~~~~~i~--~~--~dg~~~a~a~~~~V~vD~--~~r~~~iP~ 188 (204)
+.|...+. +++.++..+. +. .+++++.++..++|..|. +|+|.++|+
T Consensus 357 A~V~yt~~~s~g~~~i~veV~v~v~~~~~~~~~~~n~~~fTfva~d~~~~g~p~~Vp~ 414 (437)
T PLN02647 357 SCVLYTELENSEQPLINVEVVAHVTRPELRSSEVSNTFYFTFTVRPEAAMKNGFKIRN 414 (437)
T ss_pred EEEEEEeEEecCceEEEEEEEEEEEcCCCCcceEEEEEEEEEEEeccccCCCCccCCe
Confidence 87775554 4455554444 32 245788899999999986 678877764
No 30
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=98.05 E-value=0.0001 Score=56.57 Aligned_cols=104 Identities=12% Similarity=0.105 Sum_probs=85.7
Q ss_pred ceEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEe
Q 028735 67 FHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISG 146 (204)
Q Consensus 67 ~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~ 146 (204)
....+++|....+|..+.++++.-....|.....-+-.. +....-+-+++++.|+.++++||.|.+++.+.+
T Consensus 38 rv~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~--------~~~~~gvsvdLsvsyL~~AklGe~l~i~a~~vr 109 (148)
T KOG3328|consen 38 RVSCELKVTPDHLNRFKTLHGGATATLVDLITSAALLMT--------SGFKPGVSVDLSVSYLSSAKLGEELEIEATVVR 109 (148)
T ss_pred eEEEEEEeCHHHcCccccccccchhhHHHHHhhHHHHhc--------cCCCCceEEEEEhhhccccCCCCeEEEEEEEee
Confidence 467899999999999999999999999987765422111 122346889999999999999999999999999
Q ss_pred ecCeEEEEEEEEEEcCCCeEEEEEEEEEEEEe
Q 028735 147 GSAVRLIFDHFIFKLPNHEPILEAKGTAVWLD 178 (204)
Q Consensus 147 ~~~~~~~~~~~i~~~~dg~~~a~a~~~~V~vD 178 (204)
.|+.--....++++..+|+++|.++-+-.+-.
T Consensus 110 ~Gk~la~t~v~l~~K~t~kiia~grhtk~~~~ 141 (148)
T KOG3328|consen 110 VGKTLAFTDVELRRKSTGKIIAKGRHTKYFRP 141 (148)
T ss_pred cCceEEEEEEEEEEcCCCeEEEecceEEEeec
Confidence 99986667899998889999999987765533
No 31
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=97.82 E-value=0.0014 Score=49.98 Aligned_cols=97 Identities=14% Similarity=0.274 Sum_probs=73.1
Q ss_pred eEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHH----HHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEE
Q 028735 68 HDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFF----ERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVR 143 (204)
Q Consensus 68 ~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l----~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~ 143 (204)
...+..+.. .+|..|.++.+.+...++.|....+ .+.+. +...++.+.+++|++|++- + +.+++.
T Consensus 24 ~~v~~pl~~-n~N~~G~~hGG~l~tlad~a~~~~~~~~~~~~~~--------~~~~vt~~~~i~yl~P~~~-~-~~a~~~ 92 (138)
T TIGR02447 24 LRLSAPLAA-NINHHGTMFGGSLYTLATLSGWGLLWLRLQELGI--------DGDIVIADSHIRYLAPVTG-D-PVANCE 92 (138)
T ss_pred EEEEeECCC-CcCCCCceehhHHHHHHHHHHHHHHHHHHHHhCC--------CCcEEEEEeeeEEcCCcCC-C-eEEEEE
Confidence 456777777 4999999999999999987755422 22221 2357899999999999985 3 665666
Q ss_pred E-------------EeecCeEEEEEEEEEEcCCCeEEEEEEEEEEEE
Q 028735 144 I-------------SGGSAVRLIFDHFIFKLPNHEPILEAKGTAVWL 177 (204)
Q Consensus 144 i-------------~~~~~~~~~~~~~i~~~~dg~~~a~a~~~~V~v 177 (204)
+ ...++..+.++-++++ +|+++|++..+++.+
T Consensus 93 ~~~~~~~~~~~~~l~~~gr~~~~~~~~v~~--~~~lvA~~~g~~~~~ 137 (138)
T TIGR02447 93 APDLESWEAFLATLQRGGKARVKLEAQISS--DGKLAATFSGEYVAL 137 (138)
T ss_pred cCCHHHHHHHHHHHHhCCceEEEEEEEEEE--CCEEEEEEEEEEEEe
Confidence 5 4556777778888885 789999999998764
No 32
>COG5496 Predicted thioesterase [General function prediction only]
Probab=97.72 E-value=0.0045 Score=46.28 Aligned_cols=104 Identities=17% Similarity=0.245 Sum_probs=84.3
Q ss_pred ceEEEEEcccCCccc-------CCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEE
Q 028735 67 FHDVELQVRDYELDQ-------YGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFV 139 (204)
Q Consensus 67 ~~~~~~~Vr~~D~D~-------~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~ 139 (204)
.++.++.|+..+++. -..+-....+.|++.|..+++... + ++|..-+-++..++-.++...|..+.
T Consensus 6 ~~e~~~lv~dn~t~~~~~~~~~~~VlATp~mi~~~E~a~~el~~~~-L------d~g~ttVG~ev~vrHla~~~~G~~V~ 78 (130)
T COG5496 6 TLEGEFLVRDNHTVPPAEGSGMLNVLATPAMIGFMENASYELLQPY-L------DNGETTVGTEVLVRHLAATPPGLTVT 78 (130)
T ss_pred eeEEEEEecccccCchhHhCCccceeehHHHHHHHHHHHHHHHHhh-C------cCCcceeeEEEEeeeccCCCCCCeEE
Confidence 477888899888882 123345667788998888776552 1 24667888999999999999999999
Q ss_pred EEEEEEeecCeEEEEEEEEEEcCCCeEEEEEEEEEEEEeC
Q 028735 140 VKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDK 179 (204)
Q Consensus 140 V~t~i~~~~~~~~~~~~~i~~~~dg~~~a~a~~~~V~vD~ 179 (204)
|.+++.+++++.+.|.-.... +|.++.+|.-+-+.+|.
T Consensus 79 i~~~l~~v~Gr~v~f~i~a~~--~~~~Ig~g~h~R~iv~~ 116 (130)
T COG5496 79 IGARLEKVEGRKVKFRIIAME--GGDKIGEGTHTRVIVPR 116 (130)
T ss_pred EEEEEEEEeccEEEEEEEEee--CCcEEeeeEEEEEEecH
Confidence 999999999999988877774 89999999999888875
No 33
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=97.67 E-value=0.00078 Score=49.69 Aligned_cols=58 Identities=21% Similarity=0.342 Sum_probs=48.9
Q ss_pred ceEEEEEeeEEEeccCCCCCEEEEEEEEEeecC--eEEEEEEEEEEcCCCeEEEEEEEEEE
Q 028735 117 ESLALSELSLKFLAPLRSGDKFVVKVRISGGSA--VRLIFDHFIFKLPNHEPILEAKGTAV 175 (204)
Q Consensus 117 ~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~--~~~~~~~~i~~~~dg~~~a~a~~~~V 175 (204)
.+.+..+.+++|++|++.||.+.+++++.+.+. ..+.++..+++ ++|+++++|+.+..
T Consensus 68 ~~~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~~-~~g~~v~~g~~~~~ 127 (128)
T cd03449 68 PGTIYLSQSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCTN-QNGEVVIEGEAVVL 127 (128)
T ss_pred ceEEEEEEEEEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEEe-CCCCEEEEEEEEEe
Confidence 345677899999999999999999999998766 56778888887 47999999987753
No 34
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=97.62 E-value=0.004 Score=49.91 Aligned_cols=95 Identities=13% Similarity=0.154 Sum_probs=68.0
Q ss_pred eEEEEEcccCCc-ccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEe
Q 028735 68 HDVELQVRDYEL-DQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISG 146 (204)
Q Consensus 68 ~~~~~~Vr~~D~-D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~ 146 (204)
-.....|...+. |..|.++..-.+..++.+ ... .. .+...+....+++|++|+..||.+.+++.+.+
T Consensus 86 a~~~k~Vt~ne~fn~~~i~hG~f~~aqa~~l--a~~-~~---------~~~~~~~~i~~irF~kPV~pGD~L~~ea~v~~ 153 (185)
T PRK04424 86 AISILEITEEMVFSKTGIARGHHLFAQANSL--AVA-VI---------DAELALTGVANIRFKRPVKLGERVVAKAEVVR 153 (185)
T ss_pred EEEEEecChhhccCCCCeecHHHHHHHHHHH--HHH-hc---------CCcEEEEEeeeEEEccCCCCCCEEEEEEEEEE
Confidence 455677888887 766666666533333221 111 11 24456777889999999999999999999998
Q ss_pred ecCeEEEEEEEEEEcCCCeEEEEEEEEEEE
Q 028735 147 GSAVRLIFDHFIFKLPNHEPILEAKGTAVW 176 (204)
Q Consensus 147 ~~~~~~~~~~~i~~~~dg~~~a~a~~~~V~ 176 (204)
.++..+.+...+.. +|+++++|+.+++.
T Consensus 154 ~~~~~~~v~~~~~v--~g~~V~ege~~~~~ 181 (185)
T PRK04424 154 KKGNKYIVEVKSYV--GDELVFRGKFIMYR 181 (185)
T ss_pred ccCCEEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 88776666767664 79999999998764
No 35
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=97.54 E-value=0.004 Score=46.15 Aligned_cols=88 Identities=9% Similarity=-0.018 Sum_probs=64.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEEcC
Q 028735 83 GVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLP 162 (204)
Q Consensus 83 GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~~~ 162 (204)
..+...-.++++.++...+....+.. ...+..+...-.+++|++|++.||.+.+++++.+.++....+..+++.
T Consensus 43 pi~Pg~l~iE~~aQ~~~~~~~~~~~~----~~~~~~~l~~~~~~kf~~pv~pgd~l~i~~~v~~~~~~~~~~~~~~~~-- 116 (131)
T cd01288 43 PIMPGVLIIEALAQAAGILGLKSLED----FEGKLVYFAGIDKARFRKPVVPGDQLILEVELLKLRRGIGKFKGKAYV-- 116 (131)
T ss_pred CcCCchHHHHHHHHHHHHHhhhcccc----cCCcEEEEeeecccEEccccCCCCEEEEEEEEEEeeCCEEEEEEEEEE--
Confidence 44555556677776665544322111 123345566678999999999999999999999988888888888865
Q ss_pred CCeEEEEEEEEEEE
Q 028735 163 NHEPILEAKGTAVW 176 (204)
Q Consensus 163 dg~~~a~a~~~~V~ 176 (204)
+|+++++|+.+++.
T Consensus 117 ~g~~v~~~~~~~~~ 130 (131)
T cd01288 117 DGKLVAEAELMFAI 130 (131)
T ss_pred CCEEEEEEEEEEEE
Confidence 79999999988764
No 36
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=97.47 E-value=0.016 Score=44.22 Aligned_cols=89 Identities=12% Similarity=0.065 Sum_probs=62.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEEcC
Q 028735 83 GVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLP 162 (204)
Q Consensus 83 GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~~~ 162 (204)
..+.....++++.++...+.-... . ......+...--+++|++|++.||.+.+++++...+...+.++.++..
T Consensus 58 pi~PG~l~iE~~aQ~~~~~~~~~~----~-~~~~~~~l~gi~~~kF~~pv~pGd~l~i~~~i~~~~~~~v~~~~~~~~-- 130 (147)
T PRK00006 58 PVMPGVLIIEAMAQAAGVLALKSE----E-NKGKLVYFAGIDKARFKRPVVPGDQLILEVELLKQRRGIWKFKGVATV-- 130 (147)
T ss_pred CcCchhHHHHHHHHHHHHHHhcCc----C-cCCcEEEEeeeeEEEEccccCCCCEEEEEEEEEEeeCCEEEEEEEEEE--
Confidence 345566666766665543322111 0 011233444445899999999999999999999888777778888865
Q ss_pred CCeEEEEEEEEEEEEe
Q 028735 163 NHEPILEAKGTAVWLD 178 (204)
Q Consensus 163 dg~~~a~a~~~~V~vD 178 (204)
+|+++++|+.+.+.-|
T Consensus 131 ~g~~v~~~~~~~~~~~ 146 (147)
T PRK00006 131 DGKLVAEAELMFAIRD 146 (147)
T ss_pred CCEEEEEEEEEEEEEc
Confidence 8999999999988655
No 37
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=97.22 E-value=0.031 Score=41.12 Aligned_cols=88 Identities=14% Similarity=0.099 Sum_probs=67.2
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEEc
Q 028735 82 YGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKL 161 (204)
Q Consensus 82 ~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~~ 161 (204)
++.+-..-.++++-++...++...+.... .....++...--+++|+++++.||.+.+++++.+.+.....+..++..
T Consensus 41 ~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~kf~~~v~pgd~l~i~~~i~~~~~~~~~~~~~~~~- 117 (131)
T cd00493 41 DPVMPGVLGIEAMAQAAAALAGLLGLGKG--NPPRLGYLAGVRKVKFRGPVLPGDTLTLEVELLKVRRGLGKFDGRAYV- 117 (131)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHhcccccc--cCCcEEEEEEcceeEECCCcCCCCEEEEEEEEEEeeCCEEEEEEEEEE-
Confidence 46678888888888888777765543211 112335566667999999999999999999999888766778888887
Q ss_pred CCCeEEEEEEEE
Q 028735 162 PNHEPILEAKGT 173 (204)
Q Consensus 162 ~dg~~~a~a~~~ 173 (204)
+|+++++++.+
T Consensus 118 -~g~~v~~~~~~ 128 (131)
T cd00493 118 -DGKLVAEAELM 128 (131)
T ss_pred -CCEEEEEEEEE
Confidence 69999999833
No 38
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.22 E-value=0.0034 Score=54.80 Aligned_cols=98 Identities=14% Similarity=0.220 Sum_probs=83.7
Q ss_pred ceEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEe
Q 028735 67 FHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISG 146 (204)
Q Consensus 67 ~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~ 146 (204)
.+...+.|.+.-+|..|.+.|+.+...+.++....|+.. ++-..++-+..+-|++|+..++.+.|+.++.+
T Consensus 332 ~~~~t~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~---------~~~niiIE~i~iyflk~vqid~~l~I~prIl~ 402 (432)
T COG4109 332 EYGVTVEVEPQMINSLGTISNGVFTELLTEVVQRVLRKK---------KKRNIIIENITIYFLKPVQIDSVLEIYPRILE 402 (432)
T ss_pred ccceEEEechhhccccccchHHHHHHHHHHHHHHHHHHh---------cCCceEEEeeeeeeecceecccEEEEeeeeec
Confidence 344567799999999999999999999999988777653 22347889999999999999999999999999
Q ss_pred ecCeEEEEEEEEEEcCCCeEEEEEEEEEE
Q 028735 147 GSAVRLIFDHFIFKLPNHEPILEAKGTAV 175 (204)
Q Consensus 147 ~~~~~~~~~~~i~~~~dg~~~a~a~~~~V 175 (204)
.+++.-.++.+++. +|..++.|-.+.-
T Consensus 403 ~gR~~a~idvei~~--~~~ivaKAiv~~q 429 (432)
T COG4109 403 EGRKFAKIDVEIYH--DGQIVAKAIVTVQ 429 (432)
T ss_pred cccccceeEEEEee--Ccchhhhheeeee
Confidence 99998899999997 6788887766543
No 39
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=97.19 E-value=0.011 Score=41.49 Aligned_cols=84 Identities=12% Similarity=0.079 Sum_probs=67.5
Q ss_pred CCcccHHHHHHHHHHHHHHHHHH-cCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEE
Q 028735 82 YGVVNNAVYASYCQHGRHEFFER-IGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFK 160 (204)
Q Consensus 82 ~GhVnn~~Yl~~~e~ar~~~l~~-~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~ 160 (204)
.|.++.+..+...+.+....... .+ +......+.++.|++|...++.+..+.++...++.....+-++++
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~---------~~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~ 84 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHG---------ASGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQ 84 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccC---------CCCeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceEEEEEEEC
Confidence 77888888888888775432221 11 234678999999999999999999999999999998888999997
Q ss_pred cCCCeEEEEEEEEEE
Q 028735 161 LPNHEPILEAKGTAV 175 (204)
Q Consensus 161 ~~dg~~~a~a~~~~V 175 (204)
.+|+++|.+..+..
T Consensus 85 -~~G~lva~~~~~~~ 98 (99)
T cd00556 85 -RDGKLVASATQSFL 98 (99)
T ss_pred -CCCcEEEEEEEeEc
Confidence 47999999988753
No 40
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=97.00 E-value=0.0081 Score=44.44 Aligned_cols=55 Identities=13% Similarity=0.262 Sum_probs=44.7
Q ss_pred EEEEEeeEEEeccCCCCCEEEEEEEEEeecCe-EEEEEEEEEEcCCCeEEEEEEEEE
Q 028735 119 LALSELSLKFLAPLRSGDKFVVKVRISGGSAV-RLIFDHFIFKLPNHEPILEAKGTA 174 (204)
Q Consensus 119 ~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~-~~~~~~~i~~~~dg~~~a~a~~~~ 174 (204)
..+.+.+++|.+|++.||.+.++.++.+.++. .+.++.++.+ ++|+++++++.+.
T Consensus 67 ~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~n-q~G~~v~~g~a~v 122 (123)
T cd03455 67 ARVKSFAFRLGAPLYAGDTLRFGGRVTAKRDDEVVTVELWARN-SEGDHVMAGTATV 122 (123)
T ss_pred ceEEEEEEEeeccccCCCEEEEEEEEEeeccCcEEEEEEEEEc-CCCCEEEeEEEEE
Confidence 34567899999999999999999999976543 4566777776 5899999988764
No 41
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=96.99 E-value=0.05 Score=41.04 Aligned_cols=103 Identities=12% Similarity=-0.051 Sum_probs=65.7
Q ss_pred eEEEEEcccCCcccCCc------ccHHHHHHHHHHHHHHHHHHcCCChhhHhhc-CceEEEEEeeEEEeccCCCCCEEEE
Q 028735 68 HDVELQVRDYELDQYGV------VNNAVYASYCQHGRHEFFERIGINCDEVART-GESLALSELSLKFLAPLRSGDKFVV 140 (204)
Q Consensus 68 ~~~~~~Vr~~D~D~~Gh------Vnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~-g~~~vv~~~~i~y~~~~~~gD~i~V 140 (204)
.+....|...+-=..|| +-..-.++++.++...++ |......... ...+...--+++|+++++.||++.+
T Consensus 30 ~~~~~~v~~~~~~f~gHFp~~pv~Pg~l~iE~~aQ~~~~~~---~~~~~~~~~~~~~~~l~~~~~~kF~~~v~pGd~l~i 106 (140)
T TIGR01750 30 IVAIKNVTINEPFFQGHFPEKPIMPGVLIVEALAQAGGVLA---ILSLGGEIGKGKLVYFAGIDKAKFRRPVVPGDQLIL 106 (140)
T ss_pred EEEEEEcCCCCCeecCCCcCcCcChHHHHHHHHHHHHHHHh---eccccccCCCCcEEEEeecceeEECCccCCCCEEEE
Confidence 44555555544334444 445556666655544332 1111100111 2334445569999999999999999
Q ss_pred EEEEEeecCeEEEEEEEEEEcCCCeEEEEEEEEEE
Q 028735 141 KVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAV 175 (204)
Q Consensus 141 ~t~i~~~~~~~~~~~~~i~~~~dg~~~a~a~~~~V 175 (204)
+.++...++....+..++.. +|+++++|+.+++
T Consensus 107 ~~~i~~~~~~~~~~~~~~~~--~g~~va~~~~~~~ 139 (140)
T TIGR01750 107 HAEFLKKRRKIGKFKGEATV--DGKVVAEAEITFA 139 (140)
T ss_pred EEEEEEccCCEEEEEEEEEE--CCEEEEEEEEEEE
Confidence 99999887776777777754 8999999998764
No 42
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=96.98 E-value=0.013 Score=43.92 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=45.8
Q ss_pred EEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEEcCCCeEEEEEEEEE
Q 028735 119 LALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTA 174 (204)
Q Consensus 119 ~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~~~dg~~~a~a~~~~ 174 (204)
....+.+++|.+|++.||.|.++.++.+.+.....++.++.+..+|+++.++..+.
T Consensus 68 ~~~~~~~~rf~~PV~~gdtl~~~~~v~~~~~~~~~~~~~~~nq~~g~~V~~g~~~v 123 (126)
T cd03447 68 SRVRSFTASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEARNEETGELVLRGEAEV 123 (126)
T ss_pred ceEEEEEEEEcccCcCCCEEEEEEEEEEEeCCeEEEEEEEEECCCCCEEEEEEEEE
Confidence 34566899999999999999999999988776677888888843388888887664
No 43
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=96.87 E-value=0.018 Score=44.95 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=49.0
Q ss_pred EEEEEeeEEEeccCCCCCEEEEEEEEEeecC----eEEEEEEEEEEcCCCeEEEEEEEEEEEEeC
Q 028735 119 LALSELSLKFLAPLRSGDKFVVKVRISGGSA----VRLIFDHFIFKLPNHEPILEAKGTAVWLDK 179 (204)
Q Consensus 119 ~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~----~~~~~~~~i~~~~dg~~~a~a~~~~V~vD~ 179 (204)
.+-.+.+++|++|++.||.|.++..+.+... ..++++..+.+ ++|+++.+++.+.+....
T Consensus 84 ~~~~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~N-q~Ge~V~~~~~~~~~r~~ 147 (159)
T PRK13692 84 IVQVDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTN-EEGDVVQETYTTLAGRAG 147 (159)
T ss_pred eEeeeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEc-CCCCEEEEEEEEEEEecC
Confidence 3445689999999999999999999986532 34677888887 689999999999988764
No 44
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=96.85 E-value=0.022 Score=41.65 Aligned_cols=56 Identities=25% Similarity=0.364 Sum_probs=45.4
Q ss_pred ceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCe----EEEEEEEEEEcCCCeEEEEEEEE
Q 028735 117 ESLALSELSLKFLAPLRSGDKFVVKVRISGGSAV----RLIFDHFIFKLPNHEPILEAKGT 173 (204)
Q Consensus 117 ~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~----~~~~~~~i~~~~dg~~~a~a~~~ 173 (204)
........+++|.+|++.||.|.++.++.+...+ ...+...+.+ ++|+++..|...
T Consensus 66 ~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n-~~g~~v~~g~~~ 125 (127)
T cd03441 66 DGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARN-QGGEVVLSGEAT 125 (127)
T ss_pred ccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEe-CCCCEEEEEEEE
Confidence 3467889999999999999999999999988653 4667777777 478888877654
No 45
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=96.83 E-value=0.028 Score=42.41 Aligned_cols=98 Identities=15% Similarity=0.124 Sum_probs=64.4
Q ss_pred ceEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHH-HHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEE
Q 028735 67 FHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFF-ERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRIS 145 (204)
Q Consensus 67 ~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l-~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~ 145 (204)
..+.++..++.-.|..|-++.++.....|-+..-.+ ..+|- +..+++.+.+++|++|.+ ..+..++.+.
T Consensus 30 ~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~l~~--------~~~~~~k~~~i~f~kpa~--g~v~a~~~~~ 99 (132)
T PF14539_consen 30 RVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSNLGD--------KYRVWDKSAEIDFLKPAR--GDVTATAELT 99 (132)
T ss_dssp EEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHHS-T--------TEEEEEEEEEEEE-S-----S-EEEEEE-T
T ss_pred EEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHhCCC--------cEEEEEEeeEEEEEeccC--CcEEEEEEcC
Confidence 456788888899999999999999999998766444 34442 556889999999999966 3444445444
Q ss_pred e--ec-CeEEEEEEEEEEcCCCeEEEEEEEEEE
Q 028735 146 G--GS-AVRLIFDHFIFKLPNHEPILEAKGTAV 175 (204)
Q Consensus 146 ~--~~-~~~~~~~~~i~~~~dg~~~a~a~~~~V 175 (204)
. ++ +....+...+++ .+|+++|+++.+|-
T Consensus 100 ~e~~~~~~~~~~~v~i~D-~~G~~Va~~~~t~~ 131 (132)
T PF14539_consen 100 EEQIGERGELTVPVEITD-ADGEVVAEATITWY 131 (132)
T ss_dssp CCHCCHEEEEEEEEEEEE-TTC-EEEEEEEEEE
T ss_pred HHHhCCCcEEEEEEEEEE-CCCCEEEEEEEEEE
Confidence 3 33 344666778887 58999999999983
No 46
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=96.82 E-value=0.019 Score=45.17 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=48.6
Q ss_pred EEEEeeEEEeccCCCCCEEEEEEEEEeecC----eEEEEEEEEEEcCCCeEEEEEEEEEEEEeC
Q 028735 120 ALSELSLKFLAPLRSGDKFVVKVRISGGSA----VRLIFDHFIFKLPNHEPILEAKGTAVWLDK 179 (204)
Q Consensus 120 vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~----~~~~~~~~i~~~~dg~~~a~a~~~~V~vD~ 179 (204)
+-.+.+.+|++|++.||.|.++..+.+... ..+.++.++.+ ++|+++++++.+++.-+.
T Consensus 85 v~~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~N-Q~Ge~V~~~~~~~~~~~~ 147 (166)
T PRK13691 85 VQVDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTN-DDGELVMEAYTTLMGQQG 147 (166)
T ss_pred eeeeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEEC-CCCCEEEEEEEEEEEecC
Confidence 446678899999999999999999987743 24667888886 689999999999887765
No 47
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=96.61 E-value=0.024 Score=42.13 Aligned_cols=53 Identities=8% Similarity=0.065 Sum_probs=42.5
Q ss_pred EEEeeEEEeccCCCCCEEEEEEEEEeecC----eEEEEEEEEEEcCCCeEEEEEEEEE
Q 028735 121 LSELSLKFLAPLRSGDKFVVKVRISGGSA----VRLIFDHFIFKLPNHEPILEAKGTA 174 (204)
Q Consensus 121 v~~~~i~y~~~~~~gD~i~V~t~i~~~~~----~~~~~~~~i~~~~dg~~~a~a~~~~ 174 (204)
+.+.+++|++|++.||.+.++.++.+... ..+.++..+.+ ++|+++.+|+.+.
T Consensus 70 i~~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~n-q~g~~v~~g~a~v 126 (127)
T cd03453 70 VVSFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATD-QAGGKKVLGRAIV 126 (127)
T ss_pred eEEEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEE-cCCCEEEEEEEEE
Confidence 36788999999999999999999986533 34667888887 5888888887653
No 48
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=96.56 E-value=0.023 Score=42.64 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=42.9
Q ss_pred EEEeeEEEeccCCCCCEEEEEEEEEeecC------eEEEEEEEEEEcCCCeEEEEEEEEEE
Q 028735 121 LSELSLKFLAPLRSGDKFVVKVRISGGSA------VRLIFDHFIFKLPNHEPILEAKGTAV 175 (204)
Q Consensus 121 v~~~~i~y~~~~~~gD~i~V~t~i~~~~~------~~~~~~~~i~~~~dg~~~a~a~~~~V 175 (204)
....+++|++|++.||.+.+++++.+... ..+.++..+.+ ++|+++++++.+.+
T Consensus 80 ~g~~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~n-q~g~~v~~~~~~~l 139 (140)
T cd03446 80 YGIDNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVN-QRGEVVQSGEMSLL 139 (140)
T ss_pred eccceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEc-CCCCEEEEEEEeee
Confidence 33458999999999999999999987752 24566777776 58999999988764
No 49
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=96.53 E-value=0.016 Score=43.90 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=43.4
Q ss_pred EEeeEEEeccCCCCCEEEEEEEEEeecC-------eEEEEEEEEEEcCCCeEEEEEEEEEEE
Q 028735 122 SELSLKFLAPLRSGDKFVVKVRISGGSA-------VRLIFDHFIFKLPNHEPILEAKGTAVW 176 (204)
Q Consensus 122 ~~~~i~y~~~~~~gD~i~V~t~i~~~~~-------~~~~~~~~i~~~~dg~~~a~a~~~~V~ 176 (204)
.-.+++|++|++.||+|.++.++.+... ..+.+..++.+ ++|+++++++.+.+.
T Consensus 82 ~~~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~n-q~g~~V~~~~~~~~~ 142 (146)
T cd03451 82 GYDEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYN-QDGEPVLSFERTALV 142 (146)
T ss_pred CccEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEEC-CCCCEEEEEEehhEE
Confidence 3348999999999999999999997753 24566777775 589999999987654
No 50
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=96.34 E-value=0.021 Score=42.53 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=39.1
Q ss_pred ceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCe-----E--EEEEEEEEEcCCCeEEEE
Q 028735 117 ESLALSELSLKFLAPLRSGDKFVVKVRISGGSAV-----R--LIFDHFIFKLPNHEPILE 169 (204)
Q Consensus 117 ~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~-----~--~~~~~~i~~~~dg~~~a~ 169 (204)
...+-.+.+++|++|++.||++.+++++.++..+ . +..+.++++ ++|+++++
T Consensus 73 ~~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~-~~Ge~v~t 131 (132)
T PF13452_consen 73 TRLVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTD-QDGELVAT 131 (132)
T ss_dssp GGEEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE--CTTEEEEE
T ss_pred hhEEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEEC-CCCCEEEe
Confidence 4578889999999999999999999999976554 2 344667776 58998875
No 51
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=96.30 E-value=0.023 Score=42.81 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=42.1
Q ss_pred EeeEEEeccCCCCCEEEEEEEEEeecC-------eEEEEEEEEEEcCCCeEEEEEEEEEE
Q 028735 123 ELSLKFLAPLRSGDKFVVKVRISGGSA-------VRLIFDHFIFKLPNHEPILEAKGTAV 175 (204)
Q Consensus 123 ~~~i~y~~~~~~gD~i~V~t~i~~~~~-------~~~~~~~~i~~~~dg~~~a~a~~~~V 175 (204)
..+++|++|++.||+|.+++++.+... ..+.++..+.+ ++|+++++++.+.+
T Consensus 80 ~~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~n-q~g~~v~~~~~~~~ 138 (140)
T cd03454 80 IDELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLN-QRGEVVLTFEATVL 138 (140)
T ss_pred eeeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEc-CCCCEEEEEEehhe
Confidence 359999999999999999999987742 24566777776 58999999987754
No 52
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=96.26 E-value=0.14 Score=38.62 Aligned_cols=102 Identities=17% Similarity=0.114 Sum_probs=63.1
Q ss_pred eEEEEEcccCCcc------cCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCC-EEEE
Q 028735 68 HDVELQVRDYELD------QYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGD-KFVV 140 (204)
Q Consensus 68 ~~~~~~Vr~~D~D------~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD-~i~V 140 (204)
.+.+..|...|-= .+..+-..-.++.+-++...++...+.....-......+...--+++|++++..|| .+++
T Consensus 27 ~~a~~~v~~~~~~f~gHFp~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~Pg~~~l~~ 106 (138)
T PF07977_consen 27 IVARKNVTPDEPFFDGHFPGDPVMPGVLLIEAMAQAAGFLAGYSGLAEGTGEARKVPFLAGIRNVKFRGPVYPGDKTLRI 106 (138)
T ss_dssp EEEEEEE-TTSGGGGCSTTTS--B-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCEEEEEEEEEEEEE-S-B-TTE-EEEE
T ss_pred EEEEEEeCCCCCEEEcCCCCCCCCCeEhHHHHHHHHHHhHhhhccccccCCCcceEEEeccccEEEECccEeCCCcEEEE
Confidence 4455566555443 34445555566666666665555554311000001234667788999999999999 9999
Q ss_pred EEEEEe---ecCeEEEEEEEEEEcCCCeEEEEEE
Q 028735 141 KVRISG---GSAVRLIFDHFIFKLPNHEPILEAK 171 (204)
Q Consensus 141 ~t~i~~---~~~~~~~~~~~i~~~~dg~~~a~a~ 171 (204)
+..+.+ .+.....+...++. ||+.+++++
T Consensus 107 ~v~i~~~~~~~~~~~~~~~~~~v--dg~~v~~~~ 138 (138)
T PF07977_consen 107 EVEIKKIRRREGGMAIFDGTAYV--DGELVAEAE 138 (138)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEE--TTEEEEEEE
T ss_pred EEEEEEeecccCCEEEEEEEEEE--CCEEEEEEC
Confidence 999999 66666777888887 899999875
No 53
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=96.03 E-value=0.033 Score=42.39 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=43.0
Q ss_pred EeeEEEeccCCCCCEEEEEEEEEeecC------eEEEEEEEEEEcCCCeEEEEEEEEEEE
Q 028735 123 ELSLKFLAPLRSGDKFVVKVRISGGSA------VRLIFDHFIFKLPNHEPILEAKGTAVW 176 (204)
Q Consensus 123 ~~~i~y~~~~~~gD~i~V~t~i~~~~~------~~~~~~~~i~~~~dg~~~a~a~~~~V~ 176 (204)
..+++|++|++.||.|.++..+.+... ..+.+...+.+ ++|+++++++....+
T Consensus 80 ~~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~n-q~g~~V~~~~~~~~~ 138 (142)
T cd03452 80 LENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTN-QNGELVASYDILTLV 138 (142)
T ss_pred cceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEe-cCCCEEEEEEehHee
Confidence 359999999999999999999998742 24667888886 589999999876554
No 54
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=95.60 E-value=0.15 Score=46.58 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=48.8
Q ss_pred eEEEEEeeEEEeccCCCCCEEEEEEEEEeec--CeEEEEEEEEEEcCCCeEEEEEEEEEEEEeC
Q 028735 118 SLALSELSLKFLAPLRSGDKFVVKVRISGGS--AVRLIFDHFIFKLPNHEPILEAKGTAVWLDK 179 (204)
Q Consensus 118 ~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~--~~~~~~~~~i~~~~dg~~~a~a~~~~V~vD~ 179 (204)
+....+.+++|.+|++.||++.++.++.+.. ...+.++.++.+ ++|+++.+++.++++-..
T Consensus 82 ~~~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~v~~~~~~~n-q~G~~V~~g~~~~l~~~~ 144 (466)
T PRK08190 82 GTIYLGQSLRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRCTN-QDGEVVITGTAEVIAPTE 144 (466)
T ss_pred ceEEEEEEEEEeCCcCCCCEEEEEEEEEEEECCCCEEEEEEEEEe-CCCCEEEEEEEEeecccc
Confidence 4566788999999999999999999998653 334566777777 689999999988876544
No 55
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=95.28 E-value=1 Score=34.80 Aligned_cols=107 Identities=16% Similarity=0.089 Sum_probs=67.0
Q ss_pred eEEEEEcccCCcc------cCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhh-cCceEEEEEeeEEEeccCCCCC-EEE
Q 028735 68 HDVELQVRDYELD------QYGVVNNAVYASYCQHGRHEFFERIGINCDEVAR-TGESLALSELSLKFLAPLRSGD-KFV 139 (204)
Q Consensus 68 ~~~~~~Vr~~D~D------~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~-~g~~~vv~~~~i~y~~~~~~gD-~i~ 139 (204)
..-+..|...|-= .+..+-..-.++.+-++...++-..|.... -.. ...++...--+++|++++..|| ++.
T Consensus 29 i~a~k~v~~~e~ff~gHFp~~pvmPG~L~iEamaQ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~kfr~~v~Pgd~~l~ 107 (150)
T cd01287 29 LRAEKDIDPDDWFFPCHFHGDPVMPGSLGLEAMIQLLQFYLIWLGLGTG-VDNPRFQGAPGGPGEWKYRGQITPHNKKVT 107 (150)
T ss_pred EEEEEEcCCCCceEcCCCCCCCcCchHHHHHHHHHHHHHHHhhcccccc-cCcccceeEeccceEEEECccCcCCCEEEE
Confidence 3445555554432 344445555556555555444433333111 000 1133455666899999999999 899
Q ss_pred EEEEEEeecC----eEEEEEEEEEEcCCCeEEEEEEEEEEEE
Q 028735 140 VKVRISGGSA----VRLIFDHFIFKLPNHEPILEAKGTAVWL 177 (204)
Q Consensus 140 V~t~i~~~~~----~~~~~~~~i~~~~dg~~~a~a~~~~V~v 177 (204)
+++.+.+++. .-+.++-.++. ||+++++++..-|.+
T Consensus 108 ~e~~i~~~~~~~~~~~~~~~~~~~v--dg~~v~~a~~~~~~~ 147 (150)
T cd01287 108 YEVHIKEVGRDGPRPYIIADASLWV--DGLRIYEAKDIAVRL 147 (150)
T ss_pred EEEEEEEEEccCCccEEEEEEEEEE--CCEEEEEEEccEEEe
Confidence 9999999864 44556777776 899999998877654
No 56
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=95.28 E-value=1 Score=34.72 Aligned_cols=88 Identities=17% Similarity=0.362 Sum_probs=57.9
Q ss_pred CcccCCcccHHHHHHHHHHHHHHHH----HHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEE--------
Q 028735 78 ELDQYGVVNNAVYASYCQHGRHEFF----ERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRIS-------- 145 (204)
Q Consensus 78 D~D~~GhVnn~~Yl~~~e~ar~~~l----~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~-------- 145 (204)
.+|..|-++.++....+--+.+.++ ++.|+. -..++.+.+|+|++|+.-+ +..++.+.
T Consensus 39 N~N~~~T~FgGSl~slatLaGW~lv~l~l~e~~~~--------~~IVi~~~~i~Y~~Pv~~d--~~A~~~~~~~~~~~~~ 108 (144)
T PF09500_consen 39 NINHHGTMFGGSLYSLATLAGWGLVWLQLKEAGLN--------GDIVIADSNIRYLKPVTGD--FTARCSLPEPEDWERF 108 (144)
T ss_dssp GB-TTSSB-HHHHHHHHHHHHHHHHHHHHHHHT-----------EEEEEEEEEEE-S---S----EEEEE-------S--
T ss_pred CcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCC--------CcEEEEeCceEEcCCCCCC--cEEEEeccccchhHHH
Confidence 6778888899998888887766544 234432 3589999999999999844 55555555
Q ss_pred -----eecCeEEEEEEEEEEcCCCeEEEEEEEEEEEE
Q 028735 146 -----GGSAVRLIFDHFIFKLPNHEPILEAKGTAVWL 177 (204)
Q Consensus 146 -----~~~~~~~~~~~~i~~~~dg~~~a~a~~~~V~v 177 (204)
..++.++.+..+++. +|+.+++....+|.+
T Consensus 109 ~~~l~~~grari~l~~~i~~--~~~~~a~f~G~yv~l 143 (144)
T PF09500_consen 109 LQTLARGGRARITLEVEIYS--GGELAAEFTGRYVAL 143 (144)
T ss_dssp -GGGGCTS-EEEEEEEEEEE--TTEEEEEEEEEEEEE
T ss_pred HHHHHcCCcEEEEEEEEEEE--CCEEEEEEEEEEEEE
Confidence 345778889999997 789999999998865
No 57
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=95.19 E-value=0.57 Score=38.62 Aligned_cols=82 Identities=12% Similarity=0.072 Sum_probs=57.9
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEEc
Q 028735 82 YGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKL 161 (204)
Q Consensus 82 ~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~~ 161 (204)
.+.+|.+.+..-+..|...+. .+.+..+.+.+++|.+|+..| .+.++++..+.|++.....-+++.
T Consensus 9 g~~~~GG~~a~~~~~A~~~~~------------~~~~~~~~s~~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~q- 74 (255)
T PF13622_consen 9 GRVVHGGYLAQLLAAAARTHA------------PPPGFDPHSLHVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELSQ- 74 (255)
T ss_dssp TTCE-HHHHHHHHHHHHHHCH------------TTTSSEEEEEEEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEEE-
T ss_pred CCcChhHHHHHHHHHHHHHhc------------cCCCCceEEEEeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEEE-
Confidence 456888855544444443322 112368899999999999999 999999999999987777888876
Q ss_pred CCCeEEEEEEEEEEEEe
Q 028735 162 PNHEPILEAKGTAVWLD 178 (204)
Q Consensus 162 ~dg~~~a~a~~~~V~vD 178 (204)
+|++++++..++.-.+
T Consensus 75 -~~~~~~~a~~~f~~~~ 90 (255)
T PF13622_consen 75 -DGKVVATATASFGRPE 90 (255)
T ss_dssp -TTEEEEEEEEEEE--T
T ss_pred -CCcCEEEEEEEEccCc
Confidence 7899998888876654
No 58
>PLN02864 enoyl-CoA hydratase
Probab=95.05 E-value=0.19 Score=43.43 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=50.2
Q ss_pred EEEEEeeEEEeccCCCCCEEEEEEEEEeecCeE----EEEEEEEEEcCCCeEEEEEEEEEEEEeC
Q 028735 119 LALSELSLKFLAPLRSGDKFVVKVRISGGSAVR----LIFDHFIFKLPNHEPILEAKGTAVWLDK 179 (204)
Q Consensus 119 ~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~----~~~~~~i~~~~dg~~~a~a~~~~V~vD~ 179 (204)
.+-.+.++++++|+..++.+.+++++..+..+. +.++..+.+..+|+++++..++.++...
T Consensus 94 lVHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~Rg~ 158 (310)
T PLN02864 94 LLHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFLRGA 158 (310)
T ss_pred eeeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEEeCC
Confidence 567889999999999999999999999774332 4567777765689999999999988764
No 59
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=94.91 E-value=1.1 Score=33.80 Aligned_cols=90 Identities=9% Similarity=-0.035 Sum_probs=63.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCC-CCEEEEEEEEEeecC-eEEEEEEEEE
Q 028735 82 YGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRS-GDKFVVKVRISGGSA-VRLIFDHFIF 159 (204)
Q Consensus 82 ~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~-gD~i~V~t~i~~~~~-~~~~~~~~i~ 159 (204)
+|.+-....++++-++...+.-.... ..-.....++.+.--+++|+++... ||.+.+++......+ .-..++-+++
T Consensus 44 ~~~~P~~l~iE~mAQa~a~~~g~~~~--~~~~~~~~g~l~~i~~~~f~~~v~p~Gd~l~i~~~~~~~~~~~~~~~~~~~~ 121 (138)
T cd01289 44 HGRLPAWVGIEYMAQAIAAHGGLLAR--QQGNPPRPGFLLGSRKYEAHVDRFDLGSTLLIVVAELLQGDSGLGVFECTIE 121 (138)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHH--hcCCCCCcEEEEEEEEEEEEcceeCCCCeeEEEeeeeeeCCCcEEEEEEEEE
Confidence 36788888899888776554311100 0001234567777789999999766 999999999888764 5566777777
Q ss_pred EcCCCeEEEEEEEEEE
Q 028735 160 KLPNHEPILEAKGTAV 175 (204)
Q Consensus 160 ~~~dg~~~a~a~~~~V 175 (204)
. +|+++|+|+.+..
T Consensus 122 v--~~~~va~a~l~~~ 135 (138)
T cd01289 122 D--QGGVLASGRLNVY 135 (138)
T ss_pred E--CCEEEEEEEEEEE
Confidence 6 7899999988743
No 60
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=94.57 E-value=0.72 Score=35.63 Aligned_cols=60 Identities=15% Similarity=0.060 Sum_probs=48.2
Q ss_pred ceEEEEEeeEEEeccCCCCCEEEEEEEEEeec-CeEEEEEEEEEEcCCCeEEEEEEEEEEEEe
Q 028735 117 ESLALSELSLKFLAPLRSGDKFVVKVRISGGS-AVRLIFDHFIFKLPNHEPILEAKGTAVWLD 178 (204)
Q Consensus 117 ~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~-~~~~~~~~~i~~~~dg~~~a~a~~~~V~vD 178 (204)
...++.--+++|++++..||.+.++..+...+ ..-..+...... ||+++++|+...+.++
T Consensus 85 ~~~~~gid~~kF~~~V~PGd~l~l~~~~~~~~~~~~~~~~~~a~V--dg~~v~~a~~~~~~~~ 145 (147)
T COG0764 85 LGYFLGIDNAKFKRPVLPGDQLELEVKLLKSRRLGIGKAKGVATV--DGKVVAEAELLFAGVE 145 (147)
T ss_pred EEEEEEecceeecCccCCCCEEEEEEEEEEecccceEEEEEEEEE--CCEEEEEEEEEEEEee
Confidence 66788888999999999999999999999887 433334555544 8999999998887654
No 61
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=94.12 E-value=1.3 Score=31.24 Aligned_cols=79 Identities=13% Similarity=-0.040 Sum_probs=62.0
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEE
Q 028735 81 QYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFK 160 (204)
Q Consensus 81 ~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~ 160 (204)
+.+.+|.+..+.-...|..... + ....+...++.|.+|...+..+.+++.+..-|++..........
T Consensus 14 ~~~~~~GG~l~a~a~~Aa~~~~---~----------~~~~~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~Q 80 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAARTV---P----------DDRVPHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAVQ 80 (94)
T ss_pred CCCceEHHHHHHHHHHHHHhhC---C----------CCCCeEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEEE
Confidence 5788899888887777654322 1 12457899999999999999999999999999887666777765
Q ss_pred cCCCeEEEEEEEEE
Q 028735 161 LPNHEPILEAKGTA 174 (204)
Q Consensus 161 ~~dg~~~a~a~~~~ 174 (204)
+|+++..+..++
T Consensus 81 --~g~~~~~a~~sf 92 (94)
T cd03445 81 --NGKVIFTATASF 92 (94)
T ss_pred --CCEEEEEEEEEE
Confidence 799988887664
No 62
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=94.03 E-value=3 Score=38.19 Aligned_cols=106 Identities=12% Similarity=-0.049 Sum_probs=66.4
Q ss_pred ceEEEEEcccCCccc------CCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEE
Q 028735 67 FHDVELQVRDYELDQ------YGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVV 140 (204)
Q Consensus 67 ~~~~~~~Vr~~D~D~------~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V 140 (204)
..+....|...+.=. +..+...-.++++-++...+.. .+.+. .....++...--+++|++|++.||++.+
T Consensus 349 ~i~a~k~Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~-~~~~~---~~g~lg~LlgI~kvKF~~PV~PGDtL~I 424 (464)
T PRK13188 349 KIVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVL-NTVPD---PENYSTYFMKIDKVKFRQKVVPGDTLIF 424 (464)
T ss_pred EEEEEEEcCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHh-hccCC---CCCceEEEEeccEEEEcCCCCCCCEEEE
Confidence 344555566554323 3345555556666555433222 11110 0112445555569999999999999999
Q ss_pred EEEEEe-ecCeEEEEEEEEEEcCCCeEEEEEEEEEEEEe
Q 028735 141 KVRISG-GSAVRLIFDHFIFKLPNHEPILEAKGTAVWLD 178 (204)
Q Consensus 141 ~t~i~~-~~~~~~~~~~~i~~~~dg~~~a~a~~~~V~vD 178 (204)
++.+.+ ..+....+..+++. +|+++++|+..++..+
T Consensus 425 ~veI~~~~~~giv~f~g~~~v--dGelVaeael~~~v~~ 461 (464)
T PRK13188 425 KVELLSPIRRGICQMQGKAYV--NGKLVCEAELMAQIVK 461 (464)
T ss_pred EEEEEEEecCCEEEEEEEEEE--CCEEEEEEEEEEEEec
Confidence 999876 33444567777774 8999999999887654
No 63
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=93.32 E-value=1 Score=34.66 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=41.3
Q ss_pred EEEEEeeEEEeccCCCCCEEEEEEEEEeecC-----eEEEEEEEEEEcCCCeEEEEEEEEEEE
Q 028735 119 LALSELSLKFLAPLRSGDKFVVKVRISGGSA-----VRLIFDHFIFKLPNHEPILEAKGTAVW 176 (204)
Q Consensus 119 ~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~-----~~~~~~~~i~~~~dg~~~a~a~~~~V~ 176 (204)
......+++|++|++.||.|.++..+.+... ..+..+..+.....+++.+.++-..++
T Consensus 85 ~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 147 (149)
T cd03450 85 VNYGLDKVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTVEIEGEDKPACVAEWISRL 147 (149)
T ss_pred EEeeccEEEeCcceeCCcEEEEEEEEEEEEEcCCCeEEEEEEEEEEEeCCCCceEEEEEEEee
Confidence 3455678999999999999999999986532 255566666665455666666555443
No 64
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=93.25 E-value=0.82 Score=35.50 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=46.3
Q ss_pred eEEEEEeeEEEeccCCCCCEEEEEEEEEeecC----eEEEEEEEEEEcCCCeEEEEEEEEEEEE
Q 028735 118 SLALSELSLKFLAPLRSGDKFVVKVRISGGSA----VRLIFDHFIFKLPNHEPILEAKGTAVWL 177 (204)
Q Consensus 118 ~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~----~~~~~~~~i~~~~dg~~~a~a~~~~V~v 177 (204)
+..+...+++|.+|++.||+|.+++++.+... .....+.+..+ ++|+....+...++..
T Consensus 93 ~~~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~~-~~g~~v~~~~~~~~~~ 155 (159)
T COG2030 93 GANLGGDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETVN-QEGELVLTLEATVLVL 155 (159)
T ss_pred eeeccccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEEc-cCCcEEEEEEEeEeEe
Confidence 45667789999999999999999999997542 34556777776 5788888888877653
No 65
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=93.13 E-value=1.5 Score=32.60 Aligned_cols=59 Identities=17% Similarity=0.098 Sum_probs=46.5
Q ss_pred CceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCe-----EEEEEEEEEEcCCCeEEEEEEEEEEE
Q 028735 116 GESLALSELSLKFLAPLRSGDKFVVKVRISGGSAV-----RLIFDHFIFKLPNHEPILEAKGTAVW 176 (204)
Q Consensus 116 g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~-----~~~~~~~i~~~~dg~~~a~a~~~~V~ 176 (204)
+..+++.+.+++|.++..++-.+.+++.+...+.. .+.+...++. +|++++++..++.|
T Consensus 69 ~~~~~~~~l~~~f~~~~e~~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~q--~g~~~a~~~~~~tc 132 (132)
T PF03756_consen 69 DHQFVLTSLDFTFSRFAELDVPADLTVRITCRDRRGGRPRGLRFRVTVSQ--GGRVVATASMTFTC 132 (132)
T ss_pred CceEEEEEEEEEEccccccCCCEEEEEEEEeccccCCccceEEEEEEEEE--CCEEEEEEEEEEEC
Confidence 34589999999999998888888888877744433 5666777775 89999999998865
No 66
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=92.16 E-value=0.84 Score=33.87 Aligned_cols=48 Identities=15% Similarity=0.357 Sum_probs=34.6
Q ss_pred EEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEEcCCCeEEEEEE
Q 028735 119 LALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAK 171 (204)
Q Consensus 119 ~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~~~dg~~~a~a~ 171 (204)
..+...+++|.+|++.||+|.++++.. ++ .+.++..+.+ +|+++.++.
T Consensus 70 ~~~~~~~~rF~~PV~~gDtl~~~~~~~--~~-~v~~~~~~~~--~g~~v~~g~ 117 (122)
T cd03448 70 ARFKAIKVRFSSPVFPGETLRTEMWKE--GN-RVIFQTKVVE--RDVVVLSNG 117 (122)
T ss_pred ceeEEEEEEEcCCccCCCEEEEEEEEe--CC-EEEEEEEEcc--CCcEEEECC
Confidence 456778999999999999999988854 33 4555555543 667665553
No 67
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=90.44 E-value=5 Score=28.71 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=62.5
Q ss_pred cccHHHHHHHHHHHHH--HHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEEc
Q 028735 84 VVNNAVYASYCQHGRH--EFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKL 161 (204)
Q Consensus 84 hVnn~~Yl~~~e~ar~--~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~~ 161 (204)
...+...+.|+.+... ..++..|+... ...........+.|+.+....|-+-.+.+....++.+...+-+++++
T Consensus 15 ~~~~~a~lA~~SD~~~l~~~~~~~~~~~~----~~~~~aSldhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~~~ 90 (104)
T cd03444 15 PRLHAAALAYLSDSLLLGTALRPHGLPLF----DASASASLDHAIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIFTR 90 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcc----cCcceEeeeEEEEEeCCCCCCceEEEEEECccccCCeeEEEEEEECC
Confidence 3445556666665532 22333444321 12345678889999999998899999999998888888889999985
Q ss_pred CCCeEEEEEEEEEE
Q 028735 162 PNHEPILEAKGTAV 175 (204)
Q Consensus 162 ~dg~~~a~a~~~~V 175 (204)
+|+++|.+.+..+
T Consensus 91 -~G~LvAs~~Q~~l 103 (104)
T cd03444 91 -DGELVASVAQEGL 103 (104)
T ss_pred -CCCEEEEEEEeee
Confidence 8999999988754
No 68
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=90.18 E-value=5.7 Score=35.08 Aligned_cols=110 Identities=12% Similarity=0.122 Sum_probs=71.7
Q ss_pred cccCCcccCCcccHH-HHHHHHHHHHHHHH-HHcCCChhhHhhcC--ceEEEEEe-eEEEeccCCCC-CEEEEEEEEEee
Q 028735 74 VRDYELDQYGVVNNA-VYASYCQHGRHEFF-ERIGINCDEVARTG--ESLALSEL-SLKFLAPLRSG-DKFVVKVRISGG 147 (204)
Q Consensus 74 Vr~~D~D~~GhVnn~-~Yl~~~e~ar~~~l-~~~G~~~~~l~~~g--~~~vv~~~-~i~y~~~~~~g-D~i~V~t~i~~~ 147 (204)
+...+....|..... +..+|+|+.-.-.- ..+..+ ++ ..+ ..+++... .|+|.++...| +.+.+...|...
T Consensus 15 ~lp~~a~~s~~~~~~prigk~lE~ld~~a~~~hc~~~-~~--~~~~p~~~VtAsV~~i~f~~~~~~~~~d~i~~a~Vt~a 91 (357)
T KOG2763|consen 15 VLPPRANHSGNTFVGPRIGKILEDLDALAVYRHCSEA-EE--GATLPRTIVTASVDRIDFEKPSEVGQVDIIIVAKVTWA 91 (357)
T ss_pred CCCCccccccceecchHHHHHHHHhhhhhheeecccc-cc--cCccceEEEEeeEEEEEeeccccccceeEEEEEEEEec
Confidence 666666677777777 89999998642111 112111 11 112 33444444 68899978888 466667899999
Q ss_pred cCeEEEEEEEEEE--cC--CCeEEEEEEEEEEEEeC-CCCccCCC
Q 028735 148 SAVRLIFDHFIFK--LP--NHEPILEAKGTAVWLDK-NYRPVRIP 187 (204)
Q Consensus 148 ~~~~~~~~~~i~~--~~--dg~~~a~a~~~~V~vD~-~~r~~~iP 187 (204)
++.|+...-.+.. .. +..++..|..++|..|. ++ +.++.
T Consensus 92 ~~sSMEv~i~V~q~~~~~~~~~~~~kA~f~fVard~~~~-~~~l~ 135 (357)
T KOG2763|consen 92 GKSSMEVSIYVMQEDLATGEKSLVLKATFTFVARDATNG-KAPLN 135 (357)
T ss_pred cccceEEEEEEEEehhccchhhheeeeEEEEEEecCCCC-ccccC
Confidence 9999888766665 22 33678889999999987 55 55443
No 69
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=89.68 E-value=1.2 Score=32.57 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=27.7
Q ss_pred eEEEEEeeEEEeccCCCCCEEEEEEEEEeecCeE
Q 028735 118 SLALSELSLKFLAPLRSGDKFVVKVRISGGSAVR 151 (204)
Q Consensus 118 ~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~ 151 (204)
...+...+++|.+|++.||++.++.++.+....+
T Consensus 75 ~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~~~~~ 108 (122)
T PF01575_consen 75 PARLGRFNVRFRAPVFPGDTLTAEVEVTEKREGK 108 (122)
T ss_dssp CEEEEEEEEEESS--BTTEEEEEEEEEEEEEEEE
T ss_pred ceEEEEEEEEEeccccCCCEEEEEEEEEEEEEcC
Confidence 4678999999999999999999999999865543
No 70
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=88.90 E-value=1.2 Score=42.58 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=41.0
Q ss_pred eeEEEeccCCCCCEEEEEEEEEeecC------eEEEEEEEEEEcCCCeEEEEEEEEE
Q 028735 124 LSLKFLAPLRSGDKFVVKVRISGGSA------VRLIFDHFIFKLPNHEPILEAKGTA 174 (204)
Q Consensus 124 ~~i~y~~~~~~gD~i~V~t~i~~~~~------~~~~~~~~i~~~~dg~~~a~a~~~~ 174 (204)
.+++|++|++.||+|.++..+.+... ..+.++..+.+ ++|+++.+++...
T Consensus 616 ~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~n-q~G~~V~~~~~~~ 671 (675)
T PRK11563 616 ENLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVTN-QDGELVATYDILT 671 (675)
T ss_pred ceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEE-CCCCEEEEEEEHH
Confidence 37999999999999999999997742 24677888887 6899999887654
No 71
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=88.72 E-value=1.6 Score=41.76 Aligned_cols=52 Identities=19% Similarity=0.328 Sum_probs=41.6
Q ss_pred EeeEEEeccCCCCCEEEEEEEEEeecC------eEEEEEEEEEEcCCCeEEEEEEEEEE
Q 028735 123 ELSLKFLAPLRSGDKFVVKVRISGGSA------VRLIFDHFIFKLPNHEPILEAKGTAV 175 (204)
Q Consensus 123 ~~~i~y~~~~~~gD~i~V~t~i~~~~~------~~~~~~~~i~~~~dg~~~a~a~~~~V 175 (204)
..+++|++|++.||+|.++..+.+... ..++++..+.+ ++|+++.+++....
T Consensus 603 ~~~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~n-q~G~~Vl~~~~~~l 660 (663)
T TIGR02278 603 LENLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVVN-QNGEPVATYDVLTL 660 (663)
T ss_pred cceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEc-CCCCEEEEEEEHHh
Confidence 359999999999999999999987631 14667888887 58999998887543
No 72
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=87.90 E-value=13 Score=30.40 Aligned_cols=57 Identities=9% Similarity=0.226 Sum_probs=44.7
Q ss_pred eEE-EEEeeEEE-eccCCCCCEEEEEEEEEeecCeEEEEEEEEEEcCCCeEEEEEEEEEE
Q 028735 118 SLA-LSELSLKF-LAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAV 175 (204)
Q Consensus 118 ~~v-v~~~~i~y-~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~~~dg~~~a~a~~~~V 175 (204)
.+. ..+++|.| ..|...+|-+-++++....++.+...+-+++++ +|+++|.+.+..+
T Consensus 196 ~~~~tld~ti~f~~~p~~~~~Wl~~~~~~~~~~~Gr~~~~~~l~d~-~G~lvA~~~Q~~l 254 (255)
T PF13622_consen 196 WFPATLDHTIHFHRLPFDGDEWLLLEARSPRAGNGRALMEGRLWDE-DGRLVASSRQEAL 254 (255)
T ss_dssp B-EEEEEEEEEECSHCCTTTS-EEEEEEEEEEETTEEEEEEEEEET-TS-EEEEEEEEEE
T ss_pred cccccceeEEEEEeCCccCCceEEEEEEEeEeCCCEEEEEEEEECC-CCCEEEEEEEEee
Confidence 344 88889997 455556889999999988888888899999994 8999999988764
No 73
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=87.61 E-value=7.4 Score=29.45 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=40.0
Q ss_pred cCceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEEcCCCeEEEEEEEEEE
Q 028735 115 TGESLALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAV 175 (204)
Q Consensus 115 ~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~~~dg~~~a~a~~~~V 175 (204)
.+... ..+..|-|++|.+.+|-+--.+.-....+.+--.+-++++..+|+++|++.+..+
T Consensus 72 ~~~~v-SlDHs~wFHrpfr~ddWlLY~~~sp~A~~~Rgl~~G~~f~~q~G~Lvas~~QEGl 131 (131)
T PF02551_consen 72 PKFQV-SLDHSMWFHRPFRADDWLLYAIESPSASGGRGLVRGRFFDTQDGELVASVVQEGL 131 (131)
T ss_dssp CCEEE-EEEEEEEE-S--BTTS-EEEEEEEEEEETTEEEEEECCEEECTTEEEEEEEEEEE
T ss_pred cccEE-ecceeEEEcCCCCCCCCEEEEEEcCccccCcccccCceEecCCCCEEEEEecCCC
Confidence 34444 7888999999999999877777665444444446677773369999999887653
No 74
>PLN02864 enoyl-CoA hydratase
Probab=87.22 E-value=4.8 Score=34.79 Aligned_cols=52 Identities=19% Similarity=0.370 Sum_probs=38.6
Q ss_pred EEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEEcCCCeEEEEEEEEEE
Q 028735 119 LALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAV 175 (204)
Q Consensus 119 ~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~~~dg~~~a~a~~~~V 175 (204)
-.+.+.+++|.+|+..||++.++.|.. +..+.++..+ + ++|+++.+|..+..
T Consensus 253 ~~~~~~~~rF~~PV~pGdtl~~~~~~~---~~~v~~~~~~-~-~~g~~vl~G~a~~~ 304 (310)
T PLN02864 253 TAVKTISGRFLLHVYPGETLVTEMWLE---GLRVIYQTKV-K-ERNKAVLSGYVDLR 304 (310)
T ss_pred ceEEEEEEEEcCCccCCCEEEEEEEeC---CCEEEEEEEE-e-cCCeEEEEEEEEEe
Confidence 356788999999999999998887753 3345555555 3 47788888877754
No 75
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=86.18 E-value=13 Score=31.96 Aligned_cols=105 Identities=13% Similarity=0.075 Sum_probs=76.2
Q ss_pred EEEEcccCCcccCCcccHHHHHHHHHHHHH--HHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEee
Q 028735 70 VELQVRDYELDQYGVVNNAVYASYCQHGRH--EFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGG 147 (204)
Q Consensus 70 ~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~--~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~ 147 (204)
..+.||....=++-..-+...+.|+.+--- --+.-.|+++ ...+...+-.++.+-|++|.+.+|-+--.+.....
T Consensus 178 ~~vWira~~~~pdd~~~~~~lLay~SD~~ll~tal~~Hg~~~---~~~~~~~aSLDHs~wFhrp~~~ddWlLy~~~sp~A 254 (289)
T COG1946 178 QQVWIRARGELPDDPRLHQALLAYLSDFTLLDTALQPHGLGF---LTPGIQVASLDHSMWFHRPFRLDDWLLYAQESPSA 254 (289)
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHhccchhhhhhhccCCCcc---ccCcceEeeccceEEEeccccCCCEEEEEeeCCcc
Confidence 466677776667777778888888876431 1112234332 13456677788899999999999999888888877
Q ss_pred cCeEEEEEEEEEEcCCCeEEEEEEEEEEEEe
Q 028735 148 SAVRLIFDHFIFKLPNHEPILEAKGTAVWLD 178 (204)
Q Consensus 148 ~~~~~~~~~~i~~~~dg~~~a~a~~~~V~vD 178 (204)
.+.+-..+-++++ .+|+++|......+..-
T Consensus 255 ~~~rgl~~G~lf~-r~G~LiA~~~QEG~~r~ 284 (289)
T COG1946 255 SGGRGLVRGQLFD-RDGQLIASVVQEGLIRY 284 (289)
T ss_pred cCCcceeeeEEEc-CCCCEEEEEeeeEEEec
Confidence 7766666778887 59999999998887653
No 76
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=85.35 E-value=14 Score=28.01 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=34.7
Q ss_pred EEeeEEEeccCCCC-C----EEEEEEEEEeec--CeEEEEEEEEEEcCCCeEEEEEEEE
Q 028735 122 SELSLKFLAPLRSG-D----KFVVKVRISGGS--AVRLIFDHFIFKLPNHEPILEAKGT 173 (204)
Q Consensus 122 ~~~~i~y~~~~~~g-D----~i~V~t~i~~~~--~~~~~~~~~i~~~~dg~~~a~a~~~ 173 (204)
.+.+++|.+|++.| | ++.++..+.+.. +..+.+...+.+ .+++...+|..+
T Consensus 81 ~~~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~ 138 (142)
T PRK13693 81 TEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTATT-GGKKIFGRAIAS 138 (142)
T ss_pred EEEEEEecccEECCCCccceEEEEEEEEEEeccCCcEEEEEEEEEE-CCcEEEEEEEEE
Confidence 47899999999964 3 899988888764 335566666665 344545554443
No 77
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=84.17 E-value=19 Score=28.43 Aligned_cols=101 Identities=19% Similarity=0.055 Sum_probs=63.8
Q ss_pred eEEEEEcccCCcccCCcc------cHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCE-EEE
Q 028735 68 HDVELQVRDYELDQYGVV------NNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDK-FVV 140 (204)
Q Consensus 68 ~~~~~~Vr~~D~D~~GhV------nn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~-i~V 140 (204)
.+-+..|...|-=..||- -..--++.+-++...++-..+ ..+.++....-+.+|++++..||+ +.+
T Consensus 55 i~a~k~v~~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~-------~~~~g~l~g~~~~kfr~~v~Pgd~~l~l 127 (172)
T PRK05174 55 IVAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLG-------GPGKGRALGVGEVKFTGQVLPTAKKVTY 127 (172)
T ss_pred EEEEEECCCCCccccCCCCCCCcCchHHHHHHHHHHHHHHHhccc-------ccCceEEeeccEEEECccCcCCCEEEEE
Confidence 455666666654344554 334444444444433332111 122346667778999999999998 899
Q ss_pred EEEEEeec---CeEEEEEEEEEEcCCCeEEEEEEEEEEEE
Q 028735 141 KVRISGGS---AVRLIFDHFIFKLPNHEPILEAKGTAVWL 177 (204)
Q Consensus 141 ~t~i~~~~---~~~~~~~~~i~~~~dg~~~a~a~~~~V~v 177 (204)
++.+.+.. +.-..++-.++. +|+++++++-..+.+
T Consensus 128 ~v~i~~~~~~~~~~~~~~~~i~v--~g~~va~a~~~~l~~ 165 (172)
T PRK05174 128 EIDIKRVINRKLVMGIADGRVLV--DGEEIYTAKDLKVGL 165 (172)
T ss_pred EEEEEEEecCCCCEEEEEEEEEE--CCEEEEEEEeeEEEE
Confidence 99888863 333556777776 799999997666543
No 78
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=82.15 E-value=9.1 Score=31.91 Aligned_cols=78 Identities=8% Similarity=-0.025 Sum_probs=60.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEEcC
Q 028735 83 GVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLP 162 (204)
Q Consensus 83 GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~~~ 162 (204)
+.++.+..+.-+-.|..... + -...+..+++.|.++...+..+.++++..+-|++......+++.
T Consensus 21 ~~~fGG~~~Aqal~Aa~~tv---~----------~~~~~~S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~Q-- 85 (271)
T TIGR00189 21 NRVFGGQVVGQALAAASKTV---P----------EEFIPHSLHSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAVQ-- 85 (271)
T ss_pred CceEccHHHHHHHHHHHhcC---C----------CCCCcceeEEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEEE--
Confidence 47888888877776654322 1 12456789999999999999999999999999876666666665
Q ss_pred CCeEEEEEEEEEE
Q 028735 163 NHEPILEAKGTAV 175 (204)
Q Consensus 163 dg~~~a~a~~~~V 175 (204)
+|++++++...+.
T Consensus 86 ~g~~~~~a~asf~ 98 (271)
T TIGR00189 86 HGKTIFTLQASFQ 98 (271)
T ss_pred CCEEEEEEEEEcc
Confidence 7999999988776
No 79
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=81.06 E-value=31 Score=28.69 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=47.4
Q ss_pred EEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEEcCCCeEEEEEEEEEEE
Q 028735 119 LALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAVW 176 (204)
Q Consensus 119 ~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~~~dg~~~a~a~~~~V~ 176 (204)
....++.+.|+++...+|-+-.+++....+..+-...-++++ .+|+++|.+.+..++
T Consensus 214 ~aSldhtv~fh~~~~~~~W~l~~~~s~~~~~Grg~~~~~l~d-~~G~lvAs~~Qe~l~ 270 (271)
T TIGR00189 214 AASLDHSIWFHRPFRADDWLLYKCSSPSASGSRGLVEGKIFT-RDGVLIASTVQEGLV 270 (271)
T ss_pred EEeeeeeEEEeCCCCCCeeEEEEEEeccccCCceEEEEEEEC-CCCCEEEEEEeeeec
Confidence 357788999999988999999999888777766667889997 599999999887653
No 80
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=78.26 E-value=31 Score=27.10 Aligned_cols=101 Identities=17% Similarity=0.063 Sum_probs=63.1
Q ss_pred ceEEEEEcccCCcccCCc------ccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEE-E
Q 028735 67 FHDVELQVRDYELDQYGV------VNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKF-V 139 (204)
Q Consensus 67 ~~~~~~~Vr~~D~D~~Gh------Vnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i-~ 139 (204)
.-+.+..|...|-=..|| +-..-.++.+-++...++-..+ ..+.++...--+++|++++..||++ .
T Consensus 51 ~i~a~k~Vs~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~-------~~~~g~l~gi~~~kfr~~v~Pgd~~~~ 123 (169)
T TIGR01749 51 YVEAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFFLGWLG-------GPGRGRALGVGEVKFTGQVLPTAKKVT 123 (169)
T ss_pred EEEEEEEcCCCCcceeCCCCCCCcCchHHHHHHHHHHHHHHHhccc-------cCCceEEeeccEEEEccCEecCCeEEE
Confidence 344566677666434444 4445555555555444332111 1223455665699999999999996 8
Q ss_pred EEEEEEee---cCeEEEEEEEEEEcCCCeEEEEEEEEEEE
Q 028735 140 VKVRISGG---SAVRLIFDHFIFKLPNHEPILEAKGTAVW 176 (204)
Q Consensus 140 V~t~i~~~---~~~~~~~~~~i~~~~dg~~~a~a~~~~V~ 176 (204)
+++.+.+. .+.-..++-+++. +|+++++++-..+.
T Consensus 124 l~v~i~~~~~~~~~~~~~~~~i~v--~g~~va~a~~~~~~ 161 (169)
T TIGR01749 124 YRIHFKRVINRRLVMGIADGEVLV--DGRLIYTASDLRVG 161 (169)
T ss_pred EEEEEEEEeecCCcEEEEEEEEEE--CCEEEEEEECCEEE
Confidence 88888875 2334566777776 79999998765554
No 81
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=73.97 E-value=21 Score=30.28 Aligned_cols=80 Identities=14% Similarity=0.035 Sum_probs=61.3
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEE
Q 028735 81 QYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFK 160 (204)
Q Consensus 81 ~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~ 160 (204)
....++.+..+.-.-.|..... +.+..+...++.|.+|...+..|..++....-|++.......++.
T Consensus 30 ~~r~~fGGqv~AQal~AA~~tv-------------~~~~~~hSlh~~Fl~pg~~~~pi~y~Ve~lRdGRSfstr~V~a~Q 96 (286)
T PRK10526 30 GLRQVFGGQVVGQALYAAKETV-------------PEERLVHSFHSYFLRPGDSQKPIIYDVETLRDGNSFSARRVAAIQ 96 (286)
T ss_pred CCCceechHHHHHHHHHHHhcC-------------CCCCCceEEEEEcCCCCCCCCCEEEEEEEEeCCCceEeEEEEEEE
Confidence 3567888888877766654321 113578899999999999999999999999988875556666664
Q ss_pred cCCCeEEEEEEEEEE
Q 028735 161 LPNHEPILEAKGTAV 175 (204)
Q Consensus 161 ~~dg~~~a~a~~~~V 175 (204)
+|+++..+...+-
T Consensus 97 --~g~~if~~~~sF~ 109 (286)
T PRK10526 97 --NGKPIFYMTASFQ 109 (286)
T ss_pred --CCEEEEEEEEEec
Confidence 8999998888775
No 82
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=71.83 E-value=63 Score=28.67 Aligned_cols=86 Identities=7% Similarity=-0.047 Sum_probs=64.7
Q ss_pred cceEEEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEE
Q 028735 66 EFHDVELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRIS 145 (204)
Q Consensus 66 ~~~~~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~ 145 (204)
...+...-+...+.|.+|.++.+-.++|+.+-...-..... .+.-.+.+=-.|+|.+|+..|+.+...+.+.
T Consensus 198 T~v~sseI~~P~~~N~~G~iFGGflMrka~ElA~~~A~~f~--------~~~p~~rsVD~i~F~~pVdvG~~L~f~s~V~ 269 (357)
T KOG2763|consen 198 TKVSSSEICQPEHRNIHGTIFGGFLMRKALELAEITAKLFC--------KGRPATRSVDDIEFQKPVDVGCVLTFSSFVT 269 (357)
T ss_pred cceeEEEeecCcccCccCceehHHHHHHHHHHHHHHHHHHc--------CCCceEEEechhhccCcceeeeEEEEeeEEE
Confidence 35567777899999999999999999999987765444332 1112334444899999999999999999999
Q ss_pred eecCeEEEEEEEEE
Q 028735 146 GGSAVRLIFDHFIF 159 (204)
Q Consensus 146 ~~~~~~~~~~~~i~ 159 (204)
-.++++..+..+..
T Consensus 270 yT~~k~~~vqv~~~ 283 (357)
T KOG2763|consen 270 YTDNKSIYVQVKAV 283 (357)
T ss_pred EecCCceeEEEEEe
Confidence 88888654444444
No 83
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=71.00 E-value=47 Score=28.59 Aligned_cols=95 Identities=12% Similarity=0.016 Sum_probs=61.6
Q ss_pred EEEEcccCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEecc-CCCCCEEEEEEEEEeec
Q 028735 70 VELQVRDYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAP-LRSGDKFVVKVRISGGS 148 (204)
Q Consensus 70 ~~~~Vr~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~-~~~gD~i~V~t~i~~~~ 148 (204)
...+..-.+ |..+|..-.+|+.=+.-.-+ ++........-....-.+..|-|+++ .+.+|-+--++.....+
T Consensus 198 ir~r~~~~~-D~r~h~~~vaylSD~~ll~T------a~~~h~~~g~~s~~~SLdHsiwfH~~e~~iddwilye~~s~~a~ 270 (294)
T KOG3016|consen 198 IRARENLRC-DERLHRWVVAYLSDLILLTT------ALNPHNREGMSSMALSLDHSIWFHRPEVRADDWLLYECVSPIAT 270 (294)
T ss_pred eecccccCc-hhhhceehHhhhhhHHHHHh------cccchhhccceeeecccceeEEEecccccccceEEEEEEecccc
Confidence 344444456 99999988888865433222 22221111001123445678888887 78999888888777777
Q ss_pred CeEEEEEEEEEEcCCCeEEEEEEE
Q 028735 149 AVRLIFDHFIFKLPNHEPILEAKG 172 (204)
Q Consensus 149 ~~~~~~~~~i~~~~dg~~~a~a~~ 172 (204)
+.+-.++-++|+ .||++++.+.+
T Consensus 271 ~sr~~i~Grlw~-rdG~l~~s~~q 293 (294)
T KOG3016|consen 271 GSRGFIEGKLWN-RDGRLICSTEQ 293 (294)
T ss_pred CcceeEeeeEEc-cCCcEEEEecc
Confidence 777778889998 59999887653
No 84
>KOG4781 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.48 E-value=9.4 Score=31.67 Aligned_cols=77 Identities=10% Similarity=0.040 Sum_probs=56.3
Q ss_pred cCCcccCCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEE
Q 028735 76 DYELDQYGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFD 155 (204)
Q Consensus 76 ~~D~D~~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~ 155 (204)
-+=+...|.+|.+.....++|+... ++.. ...+..-++.+.+++|..|+....-+.+++...++.+....+.
T Consensus 135 ~~L~gy~~~iHgG~IATllde~L~~----c~fl----~~pnk~~vTanLsisy~~pip~~~f~vi~t~~~~~~Grk~~~~ 206 (237)
T KOG4781|consen 135 KDLTGYPGLVHGGAIATLLDEALAM----CAFL----ALPNKIGVTANLSISYKRPIPTNHFVVIRTQLDKVEGRKCKTF 206 (237)
T ss_pred ccccCCCCccchHHHHHHHHHHHHH----hhcc----cCCchhheeeecccccCCCcccceEEEEecchhhhcCccccee
Confidence 3456788999999999999998642 2211 1112335789999999999999999999999998877555554
Q ss_pred EEEEE
Q 028735 156 HFIFK 160 (204)
Q Consensus 156 ~~i~~ 160 (204)
-++..
T Consensus 207 g~l~~ 211 (237)
T KOG4781|consen 207 GELNV 211 (237)
T ss_pred eEEEE
Confidence 44443
No 85
>PLN02868 acyl-CoA thioesterase family protein
Probab=64.50 E-value=26 Score=31.35 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=46.9
Q ss_pred EEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEEcCCCeEEEEEEEEEE
Q 028735 119 LALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAV 175 (204)
Q Consensus 119 ~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~~~dg~~~a~a~~~~V 175 (204)
..-..+.+.|+++.+.+|-+-.+++....++.+-..+-++|+ .+|+++|++.+..+
T Consensus 357 ~aSLdhsi~Fh~~~~~d~W~l~~~~s~~a~~gr~~~~g~l~~-~~G~LvAs~~Qe~l 412 (413)
T PLN02868 357 ALSLDHSMWFHRPFRADDWLLFVIVSPAAHNGRGFATGHMFN-RKGELVVSLTQEAL 412 (413)
T ss_pred EEEcceeEEEecCCCCCceEEEEEECCccCCCcceEEEEEEC-CCCCEEEEEEeeec
Confidence 345568999999999999999999888887777777889997 59999999987654
No 86
>PF10862 FcoT: FcoT-like thioesterase domain; InterPro: IPR022598 Proteins in this family have a HotDog fold. This family was formerly known as DUF2662. The structure of Rv0098 from M. tuberculosis [] suggested a thioesterase function. Assays showed that this protein was a thioesterase with a preference for long chain fatty acyl groups []. The maximal Kcat was observed for palmitoyl-CoA, although longer and shorter molecules were also cleaved. In solution this protein forms a homo-hexameric complex.; PDB: 2PFC_A 3B18_A.
Probab=63.25 E-value=70 Score=24.93 Aligned_cols=96 Identities=10% Similarity=0.141 Sum_probs=43.3
Q ss_pred EEEEccc-CCcccCCcccHHHHHHHHHHHHHHHHHH----------cCCChhhHhhcC-ceEEEEEeeEEEeccCCCCC-
Q 028735 70 VELQVRD-YELDQYGVVNNAVYASYCQHGRHEFFER----------IGINCDEVARTG-ESLALSELSLKFLAPLRSGD- 136 (204)
Q Consensus 70 ~~~~Vr~-~D~D~~GhVnn~~Yl~~~e~ar~~~l~~----------~G~~~~~l~~~g-~~~vv~~~~i~y~~~~~~gD- 136 (204)
-++.|.. ..+|..||-|-.-+.--+.+-....+.. .+++.++.-+.. -...+++..-+|+||+..-.
T Consensus 35 g~F~IpEScYIddTGHFNAVEfniCyNQl~Y~~~A~~v~~~l~~~f~~Wt~ddf~~rQLsdilI~~~~S~Frr~i~~~~F 114 (157)
T PF10862_consen 35 GEFSIPESCYIDDTGHFNAVEFNICYNQLAYYLIAKCVKNELIPAFAGWTLDDFWERQLSDILITSFKSRFRRPINPRHF 114 (157)
T ss_dssp EEE--SS-SSSS--SS--CHHHHHHHHHHHHHHHHHHHHTT-SCCCTT--HHHHHHCHHHHEEEEEE-EEE-S---TTSE
T ss_pred EEEccCcceEEccCCccceeeehhhHHHHHHHHHHHHHhhccchhhcccCHHHHHHhhcCceeEeechhhhhcccCcceE
Confidence 3445444 4799999999887776666554444433 255666654443 34789999999999987433
Q ss_pred --EEEEEEEEEeecC---eEEEEEEEEEEcCCCe
Q 028735 137 --KFVVKVRISGGSA---VRLIFDHFIFKLPNHE 165 (204)
Q Consensus 137 --~i~V~t~i~~~~~---~~~~~~~~i~~~~dg~ 165 (204)
++.++.--..-+. ..+....+++++..|+
T Consensus 115 ~g~~~~~~~~~~~~~~~~l~l~t~~~F~D~~GG~ 148 (157)
T PF10862_consen 115 SGELEVTDMRVRDRTWPYLFLSTECRFWDDDGGR 148 (157)
T ss_dssp EEEEEEE--EEE-SSS-EEEEEEEEEEE-----E
T ss_pred EEEEEEEEEEEeccCCceEEEeeEEEEEeCCCCc
Confidence 3333332222222 2334466777765555
No 87
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=62.35 E-value=97 Score=26.26 Aligned_cols=60 Identities=13% Similarity=0.136 Sum_probs=49.4
Q ss_pred ceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEEcCCCeEEEEEEEEEEEE
Q 028735 117 ESLALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAVWL 177 (204)
Q Consensus 117 ~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~~~dg~~~a~a~~~~V~v 177 (204)
.......+.|.|+++.+.+|-+-.+++....++.+-..+-.||+ .+|+++|.+.+..+..
T Consensus 224 ~~~aSLdhsi~Fh~~~~~d~W~L~~~~s~~a~~gr~~~~g~i~~-~~G~LvAs~~Qegl~r 283 (286)
T PRK10526 224 MQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYT-QDGVLVASTVQEGVMR 283 (286)
T ss_pred ceEEeeeEeEEEeCCCCCCceEEEEEECCcccCCceEEEEEEEC-CCCCEEEEEEeeEEEE
Confidence 33457788999999999999999888888777666666779997 5999999999987764
No 88
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=57.36 E-value=1.1e+02 Score=25.24 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=46.9
Q ss_pred cCceEEEEEeeEEEec-cCCCCCEEEEEEEEEeecCeEEEEEEEEEEcCCCeEEEEEEEEE
Q 028735 115 TGESLALSELSLKFLA-PLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTA 174 (204)
Q Consensus 115 ~g~~~vv~~~~i~y~~-~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~~~dg~~~a~a~~~~ 174 (204)
.....++.=-++.+.+ +...++.+.+.++....++..+.+...+++ .+|+++++.+..-
T Consensus 226 ~~~~lP~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~v~d-~~G~~~~~~~gl~ 285 (295)
T PF14765_consen 226 GRVFLPVSIERIRIFRAPPPPGDRLYVYARLVKSDDDTITGDVTVFD-EDGRVVAELEGLT 285 (295)
T ss_dssp TSEEEEEEEEEEEESSS--SSTSEEEEEEEEESTTTTEEEEEEEEEE-TTSBEEEEEEEEE
T ss_pred CCEEcccEeCEEEEEeccCCCCCEEEEEEEEecccceEEEEEEEEEC-CCCCEEEEEccEE
Confidence 3455677777889984 788999999999998888888889999998 5899998886554
No 89
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=44.45 E-value=1.3e+02 Score=22.52 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=53.0
Q ss_pred cCceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEE-------EEEEEEEEcCCCeEEEEEEEEEEEEeC-CCCccCC
Q 028735 115 TGESLALSELSLKFLAPLRSGDKFVVKVRISGGSAVRL-------IFDHFIFKLPNHEPILEAKGTAVWLDK-NYRPVRI 186 (204)
Q Consensus 115 ~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~-------~~~~~i~~~~dg~~~a~a~~~~V~vD~-~~r~~~i 186 (204)
.|-.|.+.+. ++.+|.+-|-.+.++.+-..-|.+.- .++.-+....+.+.+..--..++++|. +.-.+.+
T Consensus 18 dg~~~~V~~~--~~~KpGKg~a~vrvk~k~l~tG~~~e~~f~~~~kve~a~ie~~~~q~lY~dg~~~~FMD~etyeq~~v 95 (131)
T COG0231 18 DGEPYVVVEI--SHVKPGKGGAFVRVKLKNLFTGKKVEKTFKADDKVEVAIVERKTAQYLYIDGDFYVFMDLETYEQYEL 95 (131)
T ss_pred CCeEEEEEEE--EEccCCCCCcEEEEEEEEccCCCEEEEEEcCCCEEEEeEEeeeeEEEEEcCCCeEEEccCCCceEEEe
Confidence 4556777666 89999999997777766554443311 011112222233444444457899998 7888888
Q ss_pred CHHHHHHHHhhhhhc
Q 028735 187 PPEMRSKIAQFLRQE 201 (204)
Q Consensus 187 P~~~~~~l~~~~~~~ 201 (204)
|.+..+....++.+.
T Consensus 96 ~~~~~~d~~~~l~eg 110 (131)
T COG0231 96 PKDQIGDAAKFLKEG 110 (131)
T ss_pred cchhhhhHHHhcCCC
Confidence 888777777776543
No 90
>PLN02868 acyl-CoA thioesterase family protein
Probab=42.73 E-value=1.2e+02 Score=27.04 Aligned_cols=80 Identities=9% Similarity=-0.062 Sum_probs=59.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHcCCChhhHhhcCceEEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEEc
Q 028735 82 YGVVNNAVYASYCQHGRHEFFERIGINCDEVARTGESLALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKL 161 (204)
Q Consensus 82 ~GhVnn~~Yl~~~e~ar~~~l~~~G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~~ 161 (204)
.+.+|.+..+.-+-.|.... ++ ....+...++.|.++...+..+..++...+-|++........+.
T Consensus 157 ~~~~fGG~~~aqal~Aa~~~---~~----------~~~~~~s~~~~Fl~~~~~~~pv~~~V~~lr~Grs~~~r~v~~~Q- 222 (413)
T PLN02868 157 FGKVFGGQLVGQALAAASKT---VD----------PLKLVHSLHAYFLLVGDINLPIIYQVERIRDGHNFATRRVDAIQ- 222 (413)
T ss_pred cccccchHHHHHHHHHHHcc---CC----------CCCCceEeeeeecCCCCCCCCEEEEEEEEcCCCceEeeEEEEEE-
Confidence 47788888888766665321 11 12457899999999988888899999999988876666666654
Q ss_pred CCCeEEEEEEEEEEE
Q 028735 162 PNHEPILEAKGTAVW 176 (204)
Q Consensus 162 ~dg~~~a~a~~~~V~ 176 (204)
+|+++.++..++.-
T Consensus 223 -~g~~~~~~~~sf~~ 236 (413)
T PLN02868 223 -KGKVIFTLFASFQK 236 (413)
T ss_pred -CCeeEEEEeecccc
Confidence 78988888776543
No 91
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=29.82 E-value=64 Score=22.64 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=21.6
Q ss_pred CCCCCEEEEEEEEEeecCeEEEEEEE
Q 028735 132 LRSGDKFVVKVRISGGSAVRLIFDHF 157 (204)
Q Consensus 132 ~~~gD~i~V~t~i~~~~~~~~~~~~~ 157 (204)
+..||.|.|+.|.....+.+++++|.
T Consensus 47 Il~GD~V~VE~spYDltkGRIiyR~~ 72 (87)
T PRK12442 47 ILAGDRVTLELSPYDLTKGRINFRHK 72 (87)
T ss_pred ecCCCEEEEEECcccCCceeEEEEec
Confidence 56799999999988888888877775
No 92
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=28.58 E-value=2e+02 Score=32.51 Aligned_cols=61 Identities=23% Similarity=0.255 Sum_probs=52.2
Q ss_pred eEEEEEeeEEEeccCCCCCEEEEEEEEEeecCeEEEEEEEEEEcCCCeEEEEEEEEEEEEeC
Q 028735 118 SLALSELSLKFLAPLRSGDKFVVKVRISGGSAVRLIFDHFIFKLPNHEPILEAKGTAVWLDK 179 (204)
Q Consensus 118 ~~vv~~~~i~y~~~~~~gD~i~V~t~i~~~~~~~~~~~~~i~~~~dg~~~a~a~~~~V~vD~ 179 (204)
.++..-.++...+++..||.+.|..++.+.+..++.....+++. +|+++++.+..-+.+++
T Consensus 2515 sLP~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~-~g~~~~~~~~~~~~~~~ 2575 (2582)
T TIGR02813 2515 SLPSSIGEFVSYRPVSLGEKFYLKLDVVKSSGRSLVANIELYHQ-DGRLSSEMKSAKVTISK 2575 (2582)
T ss_pred CCCcccceEEEecCCCCCCceEEEEEEEeccCCeEEEEEEEECC-CCcEEEEEeCCeEEECH
Confidence 46677778899999999999999999999999999999999984 89999988776666554
No 93
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=24.33 E-value=86 Score=21.37 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=19.3
Q ss_pred CCCCCEEEEEEEEEeecCeEEEEEE
Q 028735 132 LRSGDKFVVKVRISGGSAVRLIFDH 156 (204)
Q Consensus 132 ~~~gD~i~V~t~i~~~~~~~~~~~~ 156 (204)
+..||.|.|+.|-..-++..+.++|
T Consensus 47 I~~GD~V~Ve~~~~d~~kg~I~~Ry 71 (75)
T COG0361 47 ILPGDVVLVELSPYDLTKGRIVYRY 71 (75)
T ss_pred eCCCCEEEEEecccccccccEEEEe
Confidence 4679999999988887777676655
No 94
>PF11456 DUF3019: Protein of unknown function (DUF3019); InterPro: IPR021559 This is a bacterial family of uncharacterised proteins.
Probab=24.33 E-value=2.7e+02 Score=19.88 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=22.4
Q ss_pred EEEEEEEcCCCeEEEEEEEEEEEEeC-CCCcc
Q 028735 154 FDHFIFKLPNHEPILEAKGTAVWLDK-NYRPV 184 (204)
Q Consensus 154 ~~~~i~~~~dg~~~a~a~~~~V~vD~-~~r~~ 184 (204)
..|.+.+..++..+|.+......+.. ++|..
T Consensus 65 ~~f~L~~~~~~~~la~~~v~V~~~~~k~Rrr~ 96 (102)
T PF11456_consen 65 TQFSLRDSDTGQPLAQVKVKVTWVSPKVRRRR 96 (102)
T ss_pred eEEEEEeCCCCcEEEEEEEEEEEeccCcCCcc
Confidence 46777777788989999888888744 44433
No 95
>PF03527 RHS: RHS protein; InterPro: IPR001826 RHS elements are proteins of non-essential function believed to play an important role in the natural ecology of the cell. The protein sequences comprise highly conserved 141 kDa domain containing multiple tandem 22-residue repeats, followed by divergent C-terminal domains [, ]. The 22 residue repeats contain a YD dipeptide which is the most strongly conserved motif of the repeat.
Probab=23.70 E-value=30 Score=20.65 Aligned_cols=10 Identities=40% Similarity=0.607 Sum_probs=5.7
Q ss_pred cccCCcccCC
Q 028735 74 VRDYELDQYG 83 (204)
Q Consensus 74 Vr~~D~D~~G 83 (204)
|.|++||.+|
T Consensus 1 v~~yH~D~~G 10 (41)
T PF03527_consen 1 VYYYHTDHLG 10 (41)
T ss_pred CeEEecCCCC
Confidence 4556666655
No 96
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=23.34 E-value=99 Score=26.66 Aligned_cols=61 Identities=7% Similarity=0.125 Sum_probs=40.9
Q ss_pred cccCCcccCCcccHHHHHHHHHHH-HHHHHHHc-CCChhhHhhcCceEEEEEeeEEEeccCCCCC
Q 028735 74 VRDYELDQYGVVNNAVYASYCQHG-RHEFFERI-GINCDEVARTGESLALSELSLKFLAPLRSGD 136 (204)
Q Consensus 74 Vr~~D~D~~GhVnn~~Yl~~~e~a-r~~~l~~~-G~~~~~l~~~g~~~vv~~~~i~y~~~~~~gD 136 (204)
|.+.-....||+|+..|+.|++.- -...+..+ |+ ....+..-+++..+..++|.+.-++.+
T Consensus 210 iq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~--k~akk~d~~ffqanvkvdfdrsrhlse 272 (445)
T KOG2891|consen 210 IQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGM--KLAKKGDDGFFQANVKVDFDRSRHLSE 272 (445)
T ss_pred ceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcc--hHHhhcCCcccccccccccchhhhhhH
Confidence 445556778999999999999853 33344443 33 233333456888999999988866554
No 97
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=22.20 E-value=73 Score=26.91 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=0.0
Q ss_pred eEEEeccCCCCCEEEEEEEEEeecCe--------EEEEEEEEEEcCCCeEEEEEEEEEEEEeC
Q 028735 125 SLKFLAPLRSGDKFVVKVRISGGSAV--------RLIFDHFIFKLPNHEPILEAKGTAVWLDK 179 (204)
Q Consensus 125 ~i~y~~~~~~gD~i~V~t~i~~~~~~--------~~~~~~~i~~~~dg~~~a~a~~~~V~vD~ 179 (204)
.+.|+.|++.|++.+.+..|..+..+ -++..|.+.+ +|++|.+=+.+.|+.+.
T Consensus 84 ~l~f~~pl~lgqe~t~~e~Iq~i~ek~g~~g~ltfvT~~h~~~~--~~~l~l~Err~ivY~n~ 144 (273)
T COG3777 84 ELVFHLPLRLGQEYTCHETIQYIEEKHGRSGELTFVTVPHVYSS--PGQLCLFERRTIVYTNA 144 (273)
T ss_pred eEEEecceecCceeehhHHHHHHHHhcccccceeEEeccceecc--CcceeeeeeeeEEEecC
Done!