Query 028736
Match_columns 204
No_of_seqs 108 out of 1741
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 16:10:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02399 phospholipid hydroper 100.0 7.2E-34 1.6E-38 217.0 17.3 162 42-203 75-236 (236)
2 PLN02412 probable glutathione 100.0 3.6E-33 7.7E-38 204.8 17.6 162 42-203 5-166 (167)
3 PTZ00056 glutathione peroxidas 100.0 4E-32 8.7E-37 204.2 17.3 162 42-204 15-181 (199)
4 cd00340 GSH_Peroxidase Glutath 100.0 2.8E-31 6.1E-36 192.2 16.0 150 46-196 2-151 (152)
5 PRK10606 btuE putative glutath 100.0 1.3E-30 2.8E-35 192.5 17.1 157 45-202 4-182 (183)
6 PTZ00256 glutathione peroxidas 100.0 2.3E-30 5.1E-35 192.7 17.6 162 42-203 16-183 (183)
7 TIGR02540 gpx7 putative glutat 100.0 6E-30 1.3E-34 185.5 16.2 148 46-201 2-153 (153)
8 PRK15412 thiol:disulfide inter 100.0 3.2E-29 6.9E-34 187.0 13.5 135 42-203 41-178 (185)
9 COG0386 BtuE Glutathione perox 100.0 4.2E-28 9.2E-33 168.6 15.2 158 45-203 4-162 (162)
10 PRK03147 thiol-disulfide oxido 100.0 5.2E-28 1.1E-32 178.6 14.8 135 42-200 37-171 (173)
11 KOG1651 Glutathione peroxidase 99.9 5.1E-26 1.1E-30 160.1 13.8 162 42-203 10-171 (171)
12 TIGR00385 dsbE periplasmic pro 99.9 6.2E-26 1.3E-30 167.6 14.7 135 41-202 35-172 (173)
13 PF08534 Redoxin: Redoxin; In 99.9 8.3E-27 1.8E-31 167.7 9.8 123 42-189 2-136 (146)
14 PRK14018 trifunctional thiored 99.9 8.5E-26 1.8E-30 189.2 16.2 137 42-199 34-171 (521)
15 cd02969 PRX_like1 Peroxiredoxi 99.9 1.1E-25 2.4E-30 166.0 13.2 144 43-203 1-154 (171)
16 COG1225 Bcp Peroxiredoxin [Pos 99.9 2.8E-25 6E-30 158.1 12.9 145 42-200 6-155 (157)
17 PRK09437 bcp thioredoxin-depen 99.9 4E-25 8.7E-30 160.3 13.7 143 42-198 6-150 (154)
18 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 1.9E-25 4.2E-30 156.1 10.8 123 42-183 1-124 (124)
19 cd03017 PRX_BCP Peroxiredoxin 99.9 4.3E-25 9.2E-30 157.6 11.2 138 44-197 1-139 (140)
20 cd03010 TlpA_like_DsbE TlpA-li 99.9 8.9E-25 1.9E-29 153.5 10.2 123 45-193 2-126 (127)
21 TIGR02661 MauD methylamine deh 99.9 9.7E-24 2.1E-28 157.8 16.2 129 42-200 48-178 (189)
22 cd03015 PRX_Typ2cys Peroxiredo 99.9 4.9E-24 1.1E-28 157.5 14.1 141 42-200 1-156 (173)
23 cd03012 TlpA_like_DipZ_like Tl 99.9 1.2E-24 2.6E-29 152.7 10.2 113 56-187 13-125 (126)
24 PRK00522 tpx lipid hydroperoxi 99.9 1.1E-23 2.5E-28 154.5 15.0 142 42-200 20-165 (167)
25 TIGR03137 AhpC peroxiredoxin. 99.9 4.8E-24 1E-28 159.2 11.7 139 42-198 4-153 (187)
26 cd03018 PRX_AhpE_like Peroxire 99.9 6.4E-24 1.4E-28 153.1 11.9 128 42-188 3-134 (149)
27 cd03014 PRX_Atyp2cys Peroxired 99.9 1.8E-23 4E-28 149.7 13.0 136 42-197 2-141 (143)
28 cd02968 SCO SCO (an acronym fo 99.9 8.4E-24 1.8E-28 151.2 9.4 135 45-186 1-142 (142)
29 COG1999 Uncharacterized protei 99.9 1.3E-22 2.8E-27 153.1 15.5 152 48-203 49-206 (207)
30 PRK13190 putative peroxiredoxi 99.9 3E-23 6.6E-28 156.5 11.9 141 42-201 4-154 (202)
31 PRK13599 putative peroxiredoxi 99.9 3.2E-23 6.8E-28 157.4 10.7 145 42-200 4-155 (215)
32 TIGR01626 ytfJ_HI0045 conserve 99.9 1.1E-22 2.3E-27 149.6 12.5 130 42-195 25-174 (184)
33 cd02967 mauD Methylamine utili 99.9 1.9E-22 4.2E-27 138.9 12.0 110 47-184 1-112 (114)
34 cd03008 TryX_like_RdCVF Trypar 99.9 3.7E-23 8.1E-28 147.1 8.6 107 57-184 16-129 (146)
35 cd03011 TlpA_like_ScsD_MtbDsbE 99.9 1.4E-22 3E-27 141.5 10.6 121 47-196 1-121 (123)
36 cd02971 PRX_family Peroxiredox 99.9 1.7E-22 3.8E-27 144.0 11.3 131 45-190 1-132 (140)
37 PF02630 SCO1-SenC: SCO1/SenC; 99.9 5.7E-23 1.2E-27 151.5 8.8 140 42-186 28-173 (174)
38 PRK10382 alkyl hydroperoxide r 99.9 2.2E-22 4.7E-27 149.6 11.9 141 42-200 4-155 (187)
39 PLN02919 haloacid dehalogenase 99.9 1.5E-22 3.2E-27 183.8 13.1 142 42-202 393-537 (1057)
40 cd03016 PRX_1cys Peroxiredoxin 99.9 2.4E-22 5.1E-27 151.9 11.1 142 42-200 1-153 (203)
41 PRK13191 putative peroxiredoxi 99.9 1.7E-22 3.7E-27 153.5 10.4 145 42-200 9-160 (215)
42 PRK15000 peroxidase; Provision 99.9 4.1E-22 8.9E-27 149.9 12.3 141 42-200 4-161 (200)
43 PRK13728 conjugal transfer pro 99.9 9.2E-22 2E-26 143.9 12.3 118 43-202 52-172 (181)
44 cd02970 PRX_like2 Peroxiredoxi 99.9 5.3E-22 1.1E-26 142.9 9.6 130 45-186 1-148 (149)
45 PRK13189 peroxiredoxin; Provis 99.9 1.4E-21 2.9E-26 149.3 12.1 142 42-201 11-163 (222)
46 PTZ00137 2-Cys peroxiredoxin; 99.9 1.3E-21 2.8E-26 151.5 12.1 141 41-200 69-224 (261)
47 cd02966 TlpA_like_family TlpA- 99.9 3.6E-21 7.7E-26 131.8 11.4 116 48-186 1-116 (116)
48 PTZ00253 tryparedoxin peroxida 99.9 4.9E-21 1.1E-25 144.4 11.0 131 42-190 8-149 (199)
49 cd02964 TryX_like_family Trypa 99.8 2.2E-21 4.7E-26 137.2 7.5 107 57-184 8-116 (132)
50 cd03009 TryX_like_TryX_NRX Try 99.8 2.3E-21 5E-26 136.9 6.7 112 51-184 3-116 (131)
51 TIGR02738 TrbB type-F conjugat 99.8 7.9E-20 1.7E-24 131.5 10.9 109 56-201 44-153 (153)
52 PF13905 Thioredoxin_8: Thiore 99.8 6.2E-20 1.3E-24 122.4 6.4 94 66-180 1-95 (95)
53 KOG2792 Putative cytochrome C 99.8 1.1E-18 2.5E-23 131.2 10.6 149 47-200 120-274 (280)
54 cd03013 PRX5_like Peroxiredoxi 99.8 1.9E-18 4E-23 125.3 8.9 132 42-188 1-141 (155)
55 COG0450 AhpC Peroxiredoxin [Po 99.8 6.9E-18 1.5E-22 122.8 10.3 141 42-200 5-160 (194)
56 PF00255 GSHPx: Glutathione pe 99.8 2E-17 4.3E-22 111.4 11.7 107 47-154 2-108 (108)
57 cd02950 TxlA TRX-like protein 99.7 1.4E-17 3E-22 118.9 8.0 107 52-203 4-112 (142)
58 cd02985 TRX_CDSP32 TRX family, 99.7 1.6E-15 3.4E-20 102.5 10.1 89 63-198 12-100 (103)
59 KOG0855 Alkyl hydroperoxide re 99.6 7.9E-15 1.7E-19 103.6 9.2 140 42-199 65-207 (211)
60 KOG2501 Thioredoxin, nucleored 99.6 5.3E-15 1.1E-19 104.7 7.2 114 49-183 15-131 (157)
61 cd02963 TRX_DnaJ TRX domain, D 99.6 3.5E-14 7.6E-19 97.2 9.7 91 63-200 21-111 (111)
62 TIGR02740 TraF-like TraF-like 99.5 1.4E-14 3E-19 113.8 7.8 110 55-202 155-265 (271)
63 cd02953 DsbDgamma DsbD gamma f 99.5 3.4E-14 7.3E-19 96.1 8.6 90 65-197 10-103 (104)
64 KOG0910 Thioredoxin-like prote 99.5 5.9E-14 1.3E-18 98.5 9.6 90 65-202 60-149 (150)
65 cd02951 SoxW SoxW family; SoxW 99.5 2.3E-14 5E-19 100.2 7.4 105 65-203 12-121 (125)
66 cd02948 TRX_NDPK TRX domain, T 99.5 1.7E-13 3.7E-18 92.4 9.9 87 65-200 16-102 (102)
67 cd02999 PDI_a_ERp44_like PDIa 99.5 9.2E-14 2E-18 93.3 8.1 85 62-195 14-98 (100)
68 cd02956 ybbN ybbN protein fami 99.5 2E-13 4.3E-18 90.9 9.3 86 64-197 10-95 (96)
69 PF13098 Thioredoxin_2: Thiore 99.5 1.1E-13 2.4E-18 94.8 6.0 106 65-197 4-112 (112)
70 PRK09381 trxA thioredoxin; Pro 99.5 8.5E-13 1.8E-17 90.0 9.9 89 65-201 20-108 (109)
71 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 6.4E-13 1.4E-17 89.4 8.0 84 64-195 16-99 (101)
72 PHA02278 thioredoxin-like prot 99.4 1E-12 2.3E-17 88.4 8.6 87 65-195 13-99 (103)
73 cd02954 DIM1 Dim1 family; Dim1 99.4 1E-12 2.2E-17 89.5 8.4 78 65-190 13-90 (114)
74 PRK10996 thioredoxin 2; Provis 99.4 2.2E-12 4.9E-17 91.8 10.2 89 65-201 51-139 (139)
75 COG3118 Thioredoxin domain-con 99.4 5.1E-13 1.1E-17 103.5 6.9 94 61-202 38-131 (304)
76 cd02994 PDI_a_TMX PDIa family, 99.4 2.2E-12 4.7E-17 86.7 9.2 85 65-198 16-100 (101)
77 cd02993 PDI_a_APS_reductase PD 99.4 3.8E-12 8.2E-17 86.8 8.5 87 65-195 20-107 (109)
78 TIGR01295 PedC_BrcD bacterioci 99.4 1.2E-11 2.6E-16 86.0 11.1 97 65-196 22-119 (122)
79 PTZ00443 Thioredoxin domain-co 99.4 1.2E-11 2.6E-16 94.3 11.4 90 65-202 51-140 (224)
80 cd03000 PDI_a_TMX3 PDIa family 99.3 7E-12 1.5E-16 84.7 8.8 88 65-200 14-103 (104)
81 cd03004 PDI_a_ERdj5_C PDIa fam 99.3 8.2E-12 1.8E-16 84.3 9.1 84 65-195 18-102 (104)
82 cd03005 PDI_a_ERp46 PDIa famil 99.3 3E-12 6.5E-17 86.0 6.8 82 68-196 18-101 (102)
83 cd02962 TMX2 TMX2 family; comp 99.3 1.1E-11 2.5E-16 89.0 10.1 81 65-186 46-126 (152)
84 cd02949 TRX_NTR TRX domain, no 99.3 1.1E-11 2.3E-16 82.8 9.2 85 65-197 12-96 (97)
85 cd03006 PDI_a_EFP1_N PDIa fami 99.3 8E-12 1.7E-16 85.5 8.7 84 65-195 28-111 (113)
86 KOG0907 Thioredoxin [Posttrans 99.3 1.4E-11 3.1E-16 83.1 9.4 85 65-199 20-104 (106)
87 KOG0852 Alkyl hydroperoxide re 99.3 9.5E-12 2.1E-16 88.8 8.6 133 42-192 6-148 (196)
88 cd03002 PDI_a_MPD1_like PDI fa 99.3 7.6E-12 1.7E-16 85.1 7.6 88 65-197 17-108 (109)
89 TIGR01126 pdi_dom protein disu 99.3 1E-11 2.2E-16 83.3 8.0 89 65-200 12-101 (102)
90 cd02959 ERp19 Endoplasmic reti 99.3 3.4E-12 7.4E-17 88.1 5.1 97 61-201 14-113 (117)
91 PLN00410 U5 snRNP protein, DIM 99.3 3.3E-11 7.2E-16 85.1 10.0 91 65-202 22-121 (142)
92 TIGR01068 thioredoxin thioredo 99.3 3.7E-11 7.9E-16 80.3 9.9 88 66-201 14-101 (101)
93 cd02996 PDI_a_ERp44 PDIa famil 99.3 2.7E-11 5.8E-16 82.4 7.4 85 65-196 17-107 (108)
94 cd02997 PDI_a_PDIR PDIa family 99.3 2.3E-11 5E-16 81.9 6.9 87 65-196 16-103 (104)
95 PRK00293 dipZ thiol:disulfide 99.2 3.7E-11 8E-16 103.7 9.8 96 62-201 470-570 (571)
96 PF00085 Thioredoxin: Thioredo 99.2 8.3E-11 1.8E-15 78.9 9.2 87 65-199 16-102 (103)
97 COG2077 Tpx Peroxiredoxin [Pos 99.2 2.2E-10 4.7E-15 80.1 10.3 126 42-184 20-147 (158)
98 cd03065 PDI_b_Calsequestrin_N 99.2 2.8E-10 6.2E-15 78.5 9.9 88 66-201 27-119 (120)
99 cd02984 TRX_PICOT TRX domain, 99.2 1.4E-10 3.1E-15 77.1 8.2 83 66-197 14-96 (97)
100 cd02998 PDI_a_ERp38 PDIa famil 99.2 1.4E-10 3E-15 78.1 7.7 87 65-196 17-104 (105)
101 PTZ00051 thioredoxin; Provisio 99.2 2.9E-10 6.3E-15 75.8 8.6 80 65-194 17-96 (98)
102 PTZ00102 disulphide isomerase; 99.2 3.2E-10 6.9E-15 96.3 10.9 104 51-202 34-139 (477)
103 cd02961 PDI_a_family Protein D 99.1 3E-10 6.5E-15 75.5 8.0 86 65-196 14-100 (101)
104 cd02955 SSP411 TRX domain, SSP 99.1 8.8E-10 1.9E-14 76.6 10.4 85 63-186 12-99 (124)
105 cd02986 DLP Dim1 family, Dim1- 99.1 4.9E-10 1.1E-14 75.8 8.7 43 65-108 13-55 (114)
106 PF00837 T4_deiodinase: Iodoth 99.1 2.5E-10 5.4E-15 86.4 7.7 139 42-200 75-236 (237)
107 KOG0854 Alkyl hydroperoxide re 99.1 2.9E-10 6.2E-15 81.4 7.5 153 42-200 8-167 (224)
108 cd03001 PDI_a_P5 PDIa family, 99.1 8.3E-10 1.8E-14 74.1 9.4 85 65-196 17-101 (103)
109 PTZ00102 disulphide isomerase; 99.1 5.1E-10 1.1E-14 95.1 9.1 107 50-202 358-466 (477)
110 cd02975 PfPDO_like_N Pyrococcu 99.1 2.3E-09 4.9E-14 73.5 10.4 88 65-202 21-111 (113)
111 TIGR00411 redox_disulf_1 small 99.1 2.4E-09 5.2E-14 68.8 9.8 81 69-201 2-82 (82)
112 cd02965 HyaE HyaE family; HyaE 99.1 1.9E-09 4E-14 73.0 9.5 83 64-194 25-109 (111)
113 cd02992 PDI_a_QSOX PDIa family 99.1 9.9E-10 2.2E-14 75.5 8.1 43 66-108 19-63 (114)
114 cd02957 Phd_like Phosducin (Ph 99.0 1.6E-09 3.5E-14 74.3 8.8 86 66-201 24-112 (113)
115 cd02995 PDI_a_PDI_a'_C PDIa fa 99.0 1.9E-09 4.2E-14 72.4 8.5 44 65-108 17-61 (104)
116 TIGR00424 APS_reduc 5'-adenyly 99.0 3.5E-09 7.7E-14 88.6 10.5 93 64-200 369-462 (463)
117 cd02947 TRX_family TRX family; 99.0 5.7E-09 1.2E-13 68.0 9.4 82 67-197 11-92 (93)
118 cd02958 UAS UAS family; UAS is 99.0 1.1E-08 2.3E-13 70.3 10.5 96 62-202 13-112 (114)
119 cd02989 Phd_like_TxnDC9 Phosdu 99.0 7.6E-09 1.6E-13 70.9 9.5 42 65-108 21-62 (113)
120 cd02987 Phd_like_Phd Phosducin 99.0 4.9E-09 1.1E-13 77.4 8.8 41 66-108 83-123 (175)
121 cd02952 TRP14_like Human TRX-r 98.9 4E-09 8.6E-14 72.6 6.6 45 64-109 19-70 (119)
122 PLN02309 5'-adenylylsulfate re 98.9 1.4E-08 3E-13 85.0 10.6 92 65-200 364-456 (457)
123 cd02988 Phd_like_VIAF Phosduci 98.9 1.3E-08 2.8E-13 76.1 9.3 41 65-107 101-141 (192)
124 TIGR01130 ER_PDI_fam protein d 98.9 1.2E-08 2.6E-13 86.1 9.6 91 65-202 17-110 (462)
125 PTZ00062 glutaredoxin; Provisi 98.9 2.3E-08 4.9E-13 75.2 9.4 77 67-201 18-94 (204)
126 PF13728 TraF: F plasmid trans 98.8 1.3E-08 2.8E-13 77.5 7.8 102 58-197 112-214 (215)
127 TIGR00412 redox_disulf_2 small 98.8 2.5E-08 5.5E-13 63.3 8.0 36 70-106 2-37 (76)
128 TIGR02739 TraF type-F conjugat 98.8 2.9E-08 6.2E-13 77.0 8.4 105 60-202 144-249 (256)
129 cd02960 AGR Anterior Gradient 98.8 1.1E-08 2.3E-13 71.3 5.1 25 64-88 21-45 (130)
130 KOG0908 Thioredoxin-like prote 98.8 5.6E-08 1.2E-12 73.6 9.0 91 61-201 16-106 (288)
131 PRK13703 conjugal pilus assemb 98.7 5.2E-08 1.1E-12 75.2 8.3 104 61-202 138-242 (248)
132 cd02982 PDI_b'_family Protein 98.7 1.2E-07 2.6E-12 63.6 9.0 43 65-108 11-53 (103)
133 TIGR01130 ER_PDI_fam protein d 98.7 9.3E-08 2E-12 80.8 9.7 90 65-202 363-455 (462)
134 TIGR02187 GlrX_arch Glutaredox 98.6 2.9E-07 6.2E-12 70.3 9.8 91 64-201 17-111 (215)
135 COG4232 Thiol:disulfide interc 98.6 3.7E-07 8.1E-12 77.3 8.8 97 62-200 470-567 (569)
136 PF14595 Thioredoxin_9: Thiore 98.6 2.8E-08 6.1E-13 69.6 1.8 90 61-197 36-125 (129)
137 TIGR02187 GlrX_arch Glutaredox 98.5 1.1E-06 2.3E-11 67.2 9.8 83 65-199 132-214 (215)
138 KOG0190 Protein disulfide isom 98.5 4.4E-07 9.5E-12 76.0 7.5 89 65-200 41-131 (493)
139 cd03026 AhpF_NTD_C TRX-GRX-lik 98.4 3E-06 6.4E-11 55.4 8.9 46 61-108 7-52 (89)
140 smart00594 UAS UAS domain. 98.4 2.1E-06 4.4E-11 59.7 8.5 91 62-197 23-121 (122)
141 PHA02125 thioredoxin-like prot 98.4 4.2E-06 9E-11 52.9 8.0 22 70-91 2-23 (75)
142 cd02973 TRX_GRX_like Thioredox 98.3 7.2E-06 1.6E-10 50.5 8.4 38 69-108 2-39 (67)
143 COG2143 Thioredoxin-related pr 98.3 2.4E-05 5.2E-10 55.4 11.7 109 61-201 37-149 (182)
144 COG0526 TrxA Thiol-disulfide i 98.3 1.8E-06 3.8E-11 58.2 5.3 50 58-108 24-73 (127)
145 cd01659 TRX_superfamily Thiore 98.2 1.1E-05 2.5E-10 47.9 6.7 38 70-109 1-38 (69)
146 PF13899 Thioredoxin_7: Thiore 98.1 6.5E-06 1.4E-10 52.9 5.6 44 64-108 15-61 (82)
147 TIGR02196 GlrX_YruB Glutaredox 98.0 5.8E-05 1.2E-09 46.8 8.1 32 70-108 2-33 (74)
148 KOG0912 Thiol-disulfide isomer 98.0 2.3E-05 5E-10 61.4 6.4 91 66-203 13-108 (375)
149 cd02991 UAS_ETEA UAS family, E 98.0 6.3E-05 1.4E-09 51.7 7.9 40 164-203 73-115 (116)
150 KOG0191 Thioredoxin/protein di 97.9 8.4E-05 1.8E-09 61.7 9.9 90 65-202 46-135 (383)
151 KOG1731 FAD-dependent sulfhydr 97.9 2.4E-05 5.3E-10 66.1 6.3 42 67-108 58-101 (606)
152 KOG0190 Protein disulfide isom 97.9 5.4E-05 1.2E-09 63.7 7.2 41 65-105 383-424 (493)
153 PF04592 SelP_N: Selenoprotein 97.8 0.00019 4.1E-09 54.4 8.7 130 44-199 8-144 (238)
154 PRK11657 dsbG disulfide isomer 97.8 0.00033 7.3E-09 54.7 10.4 127 65-198 116-249 (251)
155 PF09695 YtfJ_HI0045: Bacteria 97.8 0.0023 5.1E-08 45.8 13.2 142 42-200 3-157 (160)
156 cd03007 PDI_a_ERp29_N PDIa fam 97.7 0.00032 6.9E-09 48.0 7.7 42 65-108 17-60 (116)
157 PF06110 DUF953: Eukaryotic pr 97.7 0.00019 4.1E-09 49.3 6.3 43 65-108 18-67 (119)
158 PF05176 ATP-synt_10: ATP10 pr 97.6 0.0015 3.3E-08 50.9 11.6 133 42-197 97-246 (252)
159 PF03190 Thioredox_DsbH: Prote 97.6 9.6E-05 2.1E-09 53.5 4.2 32 55-86 26-57 (163)
160 TIGR02200 GlrX_actino Glutared 97.5 0.00073 1.6E-08 42.3 7.5 22 70-91 2-23 (77)
161 TIGR02180 GRX_euk Glutaredoxin 97.5 0.00027 5.8E-09 45.2 5.4 49 70-128 1-49 (84)
162 COG0678 AHP1 Peroxiredoxin [Po 97.5 0.0006 1.3E-08 48.1 7.3 129 42-184 5-145 (165)
163 PRK10877 protein disulfide iso 97.5 0.00048 1E-08 53.2 7.0 119 65-200 106-230 (232)
164 PF13192 Thioredoxin_3: Thiore 97.5 0.00085 1.9E-08 42.3 7.0 31 74-105 6-36 (76)
165 cd03019 DsbA_DsbA DsbA family, 97.2 0.0066 1.4E-07 44.5 10.2 41 65-106 14-54 (178)
166 cd03020 DsbA_DsbC_DsbG DsbA fa 97.2 0.0013 2.8E-08 49.4 6.1 32 59-90 70-101 (197)
167 PRK11509 hydrogenase-1 operon 97.1 0.0064 1.4E-07 42.6 8.8 91 67-204 35-127 (132)
168 KOG4277 Uncharacterized conser 97.1 0.0012 2.6E-08 52.0 5.3 32 67-98 44-75 (468)
169 PF05988 DUF899: Bacterial pro 97.1 0.01 2.2E-07 44.7 10.0 83 46-138 46-136 (211)
170 PF13778 DUF4174: Domain of un 97.0 0.019 4E-07 39.6 10.3 106 61-200 3-111 (118)
171 PF13911 AhpC-TSA_2: AhpC/TSA 97.0 0.0072 1.6E-07 41.2 8.1 84 88-186 2-113 (115)
172 KOG0191 Thioredoxin/protein di 96.9 0.0052 1.1E-07 51.1 8.0 42 66-107 162-204 (383)
173 KOG3425 Uncharacterized conser 96.7 0.0068 1.5E-07 41.2 5.6 43 65-108 24-74 (128)
174 cd03023 DsbA_Com1_like DsbA fa 96.7 0.0046 9.9E-08 44.0 5.2 41 65-105 4-44 (154)
175 COG1651 DsbG Protein-disulfide 96.5 0.056 1.2E-06 41.9 10.8 58 49-106 67-124 (244)
176 KOG0541 Alkyl hydroperoxide re 96.4 0.021 4.6E-07 40.7 7.0 132 42-186 11-153 (171)
177 TIGR03143 AhpF_homolog putativ 96.3 0.035 7.7E-07 48.5 9.6 40 66-105 476-515 (555)
178 PHA03050 glutaredoxin; Provisi 96.3 0.011 2.3E-07 40.1 4.8 50 70-128 15-64 (108)
179 PRK11200 grxA glutaredoxin 1; 96.2 0.014 3E-07 37.5 5.1 37 70-108 3-39 (85)
180 PF02114 Phosducin: Phosducin; 96.2 0.042 9.1E-07 43.3 8.7 41 65-107 145-185 (265)
181 cd03419 GRX_GRXh_1_2_like Glut 96.2 0.013 2.8E-07 37.1 4.9 46 70-127 2-47 (82)
182 PF13462 Thioredoxin_4: Thiore 96.2 0.015 3.3E-07 41.8 5.7 52 57-108 3-55 (162)
183 cd02976 NrdH NrdH-redoxin (Nrd 95.6 0.055 1.2E-06 32.9 5.8 32 70-108 2-33 (73)
184 KOG4498 Uncharacterized conser 95.5 0.17 3.7E-06 37.3 8.6 55 52-106 35-91 (197)
185 COG3054 Predicted transcriptio 95.5 0.17 3.6E-06 36.0 8.2 30 169-198 148-177 (184)
186 cd03418 GRX_GRXb_1_3_like Glut 95.4 0.081 1.8E-06 32.7 6.0 32 70-108 2-33 (75)
187 TIGR02183 GRXA Glutaredoxin, G 95.4 0.1 2.2E-06 33.6 6.5 37 70-108 2-38 (86)
188 PF00462 Glutaredoxin: Glutare 95.2 0.045 9.7E-07 32.5 4.1 32 70-108 1-32 (60)
189 PRK15317 alkyl hydroperoxide r 95.0 0.18 4E-06 43.6 8.8 39 65-105 115-153 (517)
190 cd02066 GRX_family Glutaredoxi 95.0 0.09 1.9E-06 31.8 5.2 23 70-92 2-24 (72)
191 cd02972 DsbA_family DsbA famil 94.9 0.22 4.7E-06 31.9 7.3 38 70-108 1-38 (98)
192 TIGR02181 GRX_bact Glutaredoxi 94.8 0.09 1.9E-06 33.0 5.0 21 70-90 1-21 (79)
193 PF06053 DUF929: Domain of unk 94.8 0.11 2.4E-06 40.4 6.3 34 64-97 56-89 (249)
194 COG4312 Uncharacterized protei 94.6 0.17 3.8E-06 38.2 6.7 82 48-139 54-143 (247)
195 cd03027 GRX_DEP Glutaredoxin ( 94.4 0.24 5.1E-06 30.6 6.1 32 70-108 3-34 (73)
196 COG0695 GrxC Glutaredoxin and 94.3 0.19 4E-06 32.0 5.5 45 70-127 3-47 (80)
197 KOG0914 Thioredoxin-like prote 94.2 0.16 3.6E-06 38.4 5.8 44 64-107 142-185 (265)
198 TIGR03140 AhpF alkyl hydropero 94.2 0.38 8.3E-06 41.6 9.0 39 65-105 116-154 (515)
199 PLN03098 LPA1 LOW PSII ACCUMUL 94.2 0.67 1.4E-05 39.2 9.9 63 46-109 276-338 (453)
200 PHA03075 glutaredoxin-like pro 94.0 0.47 1E-05 32.2 7.0 30 67-96 2-31 (123)
201 TIGR02189 GlrX-like_plant Glut 93.8 0.24 5.3E-06 32.8 5.5 21 70-90 10-30 (99)
202 TIGR02190 GlrX-dom Glutaredoxi 93.8 0.21 4.5E-06 31.5 5.0 37 65-108 5-41 (79)
203 COG4545 Glutaredoxin-related p 93.7 0.29 6.4E-06 30.4 5.2 43 71-127 5-47 (85)
204 PF11009 DUF2847: Protein of u 93.4 0.47 1E-05 31.8 6.3 41 65-106 18-58 (105)
205 PRK10329 glutaredoxin-like pro 93.3 0.33 7.1E-06 30.9 5.3 32 70-108 3-34 (81)
206 TIGR00995 3a0901s06TIC22 chlor 93.1 0.75 1.6E-05 36.2 7.9 79 42-136 78-157 (270)
207 TIGR00365 monothiol glutaredox 92.9 0.43 9.2E-06 31.5 5.6 26 65-90 10-39 (97)
208 PRK10954 periplasmic protein d 92.7 0.17 3.6E-06 38.3 3.9 42 65-107 36-80 (207)
209 COG1331 Highly conserved prote 92.7 0.58 1.3E-05 41.3 7.5 25 62-86 39-63 (667)
210 KOG0913 Thiol-disulfide isomer 92.6 0.1 2.2E-06 39.9 2.5 40 68-107 41-82 (248)
211 TIGR01617 arsC_related transcr 92.6 0.27 5.8E-06 33.6 4.4 51 72-134 3-53 (117)
212 KOG1752 Glutaredoxin and relat 92.3 0.77 1.7E-05 30.8 6.2 46 70-127 16-61 (104)
213 cd03028 GRX_PICOT_like Glutare 92.3 0.52 1.1E-05 30.5 5.4 27 65-91 6-36 (90)
214 TIGR02194 GlrX_NrdH Glutaredox 91.8 0.47 1E-05 29.2 4.6 31 71-108 2-32 (72)
215 PRK10638 glutaredoxin 3; Provi 91.8 0.54 1.2E-05 29.8 5.0 21 70-90 4-24 (83)
216 cd03036 ArsC_like Arsenate Red 91.7 0.38 8.2E-06 32.6 4.3 50 71-132 2-51 (111)
217 cd03032 ArsC_Spx Arsenate Redu 91.5 0.33 7.1E-06 33.1 3.9 52 71-134 3-54 (115)
218 cd02977 ArsC_family Arsenate R 91.3 0.61 1.3E-05 31.1 5.0 49 71-131 2-50 (105)
219 cd03029 GRX_hybridPRX5 Glutare 90.8 0.7 1.5E-05 28.3 4.6 32 70-108 3-34 (72)
220 PRK01655 spxA transcriptional 90.6 0.28 6E-06 34.4 2.9 52 70-133 2-53 (131)
221 cd02983 P5_C P5 family, C-term 90.0 2.6 5.7E-05 29.4 7.4 91 67-202 21-116 (130)
222 KOG0911 Glutaredoxin-related p 89.3 0.16 3.4E-06 38.6 0.8 42 65-108 16-57 (227)
223 PRK10824 glutaredoxin-4; Provi 88.8 1.5 3.3E-05 30.0 5.3 27 65-91 13-43 (115)
224 PRK12559 transcriptional regul 87.8 1.4 3.1E-05 30.8 4.8 47 70-127 2-48 (131)
225 KOG3414 Component of the U4/U6 87.5 7.6 0.00017 26.9 9.7 40 65-106 22-61 (142)
226 KOG2507 Ubiquitin regulatory p 87.2 3.3 7.2E-05 34.6 7.1 38 164-201 74-111 (506)
227 cd03035 ArsC_Yffb Arsenate Red 86.0 2.1 4.5E-05 28.7 4.7 48 71-130 2-49 (105)
228 PF05768 DUF836: Glutaredoxin- 85.8 1.3 2.9E-05 28.0 3.5 52 70-136 2-53 (81)
229 KOG4614 Inner membrane protein 85.5 1.5 3.2E-05 33.8 4.0 28 170-197 250-277 (287)
230 PRK13344 spxA transcriptional 84.8 1.8 3.8E-05 30.4 4.0 54 71-136 3-56 (132)
231 TIGR03143 AhpF_homolog putativ 83.8 11 0.00023 33.2 9.3 42 62-105 362-403 (555)
232 PF13848 Thioredoxin_6: Thiore 83.6 6.1 0.00013 28.6 6.7 32 167-198 151-183 (184)
233 PF01216 Calsequestrin: Calseq 82.9 14 0.00031 30.3 8.7 34 169-204 114-147 (383)
234 KOG1672 ATP binding protein [P 82.3 8.3 0.00018 28.9 6.7 40 65-106 83-122 (211)
235 PTZ00062 glutaredoxin; Provisi 80.1 6.2 0.00014 29.9 5.7 25 65-89 111-139 (204)
236 PF08806 Sep15_SelM: Sep15/Sel 79.4 0.9 1.9E-05 28.7 0.8 32 169-200 43-75 (78)
237 COG4098 comFA Superfamily II D 79.1 30 0.00064 28.7 9.4 98 65-188 304-417 (441)
238 PF04278 Tic22: Tic22-like fam 78.3 32 0.0007 27.3 11.4 60 43-108 72-136 (274)
239 COG3019 Predicted metal-bindin 77.3 23 0.0005 25.1 7.8 48 70-136 28-75 (149)
240 PRK10026 arsenate reductase; P 77.0 23 0.00051 25.1 9.7 50 70-131 4-53 (141)
241 KOG3384 Selenoprotein [General 76.7 6.6 0.00014 27.5 4.4 34 169-202 118-152 (154)
242 PF06953 ArsD: Arsenical resis 75.9 23 0.00051 24.5 8.2 28 82-109 23-50 (123)
243 TIGR03759 conj_TIGR03759 integ 75.0 11 0.00023 28.4 5.4 57 67-136 109-165 (200)
244 KOG1364 Predicted ubiquitin re 74.8 3.4 7.4E-05 33.6 3.1 42 163-204 150-192 (356)
245 COG1393 ArsC Arsenate reductas 72.8 6.5 0.00014 26.9 3.7 55 70-136 3-57 (117)
246 PRK13620 psbV cytochrome c-550 71.8 0.45 9.7E-06 35.7 -2.3 64 52-127 90-156 (215)
247 PF01323 DSBA: DSBA-like thior 70.5 7.3 0.00016 28.5 3.9 41 69-109 1-41 (193)
248 PF02966 DIM1: Mitosis protein 69.6 15 0.00033 25.6 4.9 42 65-107 19-60 (133)
249 COG1791 Uncharacterized conser 68.3 45 0.00097 24.5 7.8 76 54-136 23-99 (181)
250 PF06764 DUF1223: Protein of u 68.2 50 0.0011 25.0 11.6 41 70-113 1-42 (202)
251 cd03034 ArsC_ArsC Arsenate Red 67.7 13 0.00028 25.1 4.3 51 71-133 2-52 (112)
252 COG2761 FrnE Predicted dithiol 66.8 25 0.00053 27.1 6.0 38 67-104 4-43 (225)
253 COG2179 Predicted hydrolase of 63.8 23 0.00049 26.0 5.0 62 65-135 26-89 (175)
254 PF13462 Thioredoxin_4: Thiore 60.5 13 0.00028 26.3 3.5 31 163-199 132-162 (162)
255 COG4594 FecB ABC-type Fe3+-cit 60.2 43 0.00094 26.5 6.3 55 50-128 35-89 (310)
256 cd03033 ArsC_15kD Arsenate Red 60.0 30 0.00064 23.4 4.9 48 71-130 3-50 (113)
257 PF11211 DUF2997: Protein of u 59.5 23 0.00049 20.1 3.6 30 172-201 3-34 (48)
258 PRK09534 btuF corrinoid ABC tr 59.5 20 0.00043 29.6 4.8 26 46-71 41-66 (359)
259 TIGR00014 arsC arsenate reduct 58.9 31 0.00068 23.3 5.0 50 71-132 2-51 (114)
260 PRK12759 bifunctional gluaredo 58.8 6.9 0.00015 33.0 2.0 32 70-108 4-35 (410)
261 cd03073 PDI_b'_ERp72_ERp57 PDI 58.8 53 0.0011 22.1 8.9 31 169-200 79-110 (111)
262 PF07411 DUF1508: Domain of un 58.6 23 0.00051 20.0 3.6 33 169-201 6-38 (49)
263 PF01106 NifU: NifU-like domai 57.7 38 0.00083 20.6 4.7 37 54-90 14-53 (68)
264 cd03025 DsbA_FrnE_like DsbA fa 55.1 17 0.00037 26.6 3.4 27 70-96 3-29 (193)
265 KOG2961 Predicted hydrolase (H 52.7 88 0.0019 22.7 7.4 102 45-153 21-130 (190)
266 KOG2603 Oligosaccharyltransfer 52.5 1.2E+02 0.0026 24.7 7.8 49 49-97 43-95 (331)
267 PF03960 ArsC: ArsC family; I 52.1 27 0.00058 23.3 3.7 52 73-136 1-52 (110)
268 PF07976 Phe_hydrox_dim: Pheno 51.8 91 0.002 22.7 7.9 67 42-108 32-116 (169)
269 cd03060 GST_N_Omega_like GST_N 51.0 16 0.00034 22.0 2.2 31 72-107 3-33 (71)
270 TIGR01689 EcbF-BcbF capsule bi 49.8 34 0.00074 23.7 4.0 45 91-136 32-83 (126)
271 PRK13617 psbV cytochrome c-550 49.0 5.9 0.00013 29.0 0.1 27 52-82 45-74 (170)
272 PF08821 CGGC: CGGC domain; I 48.6 44 0.00096 22.4 4.3 70 57-130 26-99 (107)
273 TIGR01616 nitro_assoc nitrogen 48.0 72 0.0016 22.1 5.4 47 70-127 3-49 (126)
274 PRK10853 putative reductase; P 46.1 64 0.0014 22.0 4.9 50 70-131 2-51 (118)
275 PF02563 Poly_export: Polysacc 45.9 18 0.00039 22.8 2.0 32 171-202 32-68 (82)
276 PF02484 Rhabdo_NV: Rhabdoviru 44.2 33 0.00072 22.1 2.9 32 170-202 26-57 (111)
277 cd03024 DsbA_FrnE DsbA family, 43.7 1.3E+02 0.0028 22.0 6.9 38 72-109 3-43 (201)
278 cd03072 PDI_b'_ERp44 PDIb' fam 43.5 98 0.0021 20.7 8.3 35 169-203 75-110 (111)
279 COG5294 Uncharacterized protei 43.5 74 0.0016 21.6 4.6 24 56-79 53-78 (113)
280 cd02979 PHOX_C FAD-dependent P 43.3 1.3E+02 0.0027 21.9 11.1 49 43-91 1-54 (167)
281 TIGR03171 soxL2 Rieske iron-su 43.2 28 0.00061 28.2 3.1 31 46-76 100-131 (321)
282 PF08235 LNS2: LNS2 (Lipin/Ned 43.0 30 0.00065 25.0 2.9 64 51-127 3-66 (157)
283 cd02981 PDI_b_family Protein D 42.2 88 0.0019 19.7 8.1 36 66-105 17-52 (97)
284 cd03051 GST_N_GTT2_like GST_N 40.3 29 0.00063 20.6 2.3 31 72-107 3-33 (74)
285 PF14307 Glyco_tran_WbsX: Glyc 38.4 80 0.0017 25.9 5.2 43 65-107 157-199 (345)
286 PF04134 DUF393: Protein of un 38.1 20 0.00044 23.9 1.4 31 73-106 2-32 (114)
287 cd03040 GST_N_mPGES2 GST_N fam 38.1 27 0.00059 21.2 1.9 18 72-89 4-21 (77)
288 KOG3170 Conserved phosducin-li 38.0 58 0.0013 24.7 3.8 39 65-105 110-148 (240)
289 PRK10299 PhoPQ regulatory prot 37.9 37 0.00081 19.0 2.1 14 6-19 1-14 (47)
290 PF13743 Thioredoxin_5: Thiore 37.4 32 0.0007 25.2 2.5 33 72-104 2-35 (176)
291 cd02008 TPP_IOR_alpha Thiamine 37.0 32 0.00069 25.1 2.4 29 75-104 4-32 (178)
292 cd03063 TRX_Fd_FDH_beta TRX-li 36.8 93 0.002 20.3 4.3 30 169-201 49-78 (92)
293 TIGR03045 PS_II_C550 cytochrom 36.1 6.9 0.00015 28.4 -1.2 27 52-82 37-66 (159)
294 PF02526 GBP_repeat: Glycophor 35.4 6.3 0.00014 20.3 -1.1 27 175-201 4-30 (38)
295 cd03041 GST_N_2GST_N GST_N fam 34.8 31 0.00067 21.1 1.8 19 72-90 4-22 (77)
296 COG2761 FrnE Predicted dithiol 34.8 71 0.0015 24.6 4.0 36 163-203 180-215 (225)
297 PF10589 NADH_4Fe-4S: NADH-ubi 34.7 5.3 0.00012 22.3 -1.6 21 77-97 18-38 (46)
298 PF12354 Internalin_N: Bacteri 34.4 15 0.00033 21.6 0.3 8 6-13 1-8 (57)
299 PRK10893 lipopolysaccharide ex 34.3 70 0.0015 24.0 3.9 13 42-54 36-48 (192)
300 PF10790 DUF2604: Protein of U 34.2 38 0.00082 20.5 1.9 22 42-63 32-53 (76)
301 PF01323 DSBA: DSBA-like thior 34.1 51 0.0011 23.9 3.1 31 163-198 163-193 (193)
302 cd00570 GST_N_family Glutathio 34.0 41 0.00089 19.1 2.2 31 72-107 3-33 (71)
303 PRK05778 2-oxoglutarate ferred 33.6 37 0.00081 27.4 2.4 22 74-96 17-38 (301)
304 PF11191 DUF2782: Protein of u 33.5 1.4E+02 0.0031 19.7 5.2 29 46-74 38-66 (105)
305 PF14427 Pput2613-deam: Pput_2 33.5 64 0.0014 21.8 3.1 40 46-85 42-85 (118)
306 KOG0394 Ras-related GTPase [Ge 33.3 95 0.0021 23.4 4.2 67 68-136 75-156 (210)
307 PRK11866 2-oxoacid ferredoxin 33.1 57 0.0012 26.0 3.4 22 74-95 6-29 (279)
308 PF09419 PGP_phosphatase: Mito 32.7 1.5E+02 0.0032 21.8 5.2 54 45-98 17-74 (168)
309 PRK11867 2-oxoglutarate ferred 32.3 40 0.00088 27.0 2.4 22 73-95 15-36 (286)
310 PRK02048 4-hydroxy-3-methylbut 31.6 1.6E+02 0.0035 26.3 6.0 111 66-200 24-139 (611)
311 PRK10449 heat-inducible protei 30.8 1.3E+02 0.0029 21.1 4.6 15 48-62 34-48 (140)
312 PF05673 DUF815: Protein of un 30.8 2.5E+02 0.0054 22.1 6.4 87 73-174 58-144 (249)
313 cd02990 UAS_FAF1 UAS family, F 30.3 2E+02 0.0043 20.3 8.8 38 164-201 93-133 (136)
314 cd03059 GST_N_SspA GST_N famil 29.7 46 0.001 19.7 1.9 17 72-88 3-19 (73)
315 cd03031 GRX_GRX_like Glutaredo 29.7 19 0.00041 25.7 0.2 14 77-90 15-28 (147)
316 COG1535 EntB Isochorismate hyd 29.6 68 0.0015 23.9 3.0 57 67-125 39-95 (218)
317 TIGR02177 PorB_KorB 2-oxoacid: 29.6 56 0.0012 26.2 2.8 14 189-202 161-174 (287)
318 TIGR03147 cyt_nit_nrfF cytochr 29.3 85 0.0018 21.8 3.3 16 116-131 74-89 (126)
319 PF14062 DUF4253: Domain of un 28.7 1.2E+02 0.0026 20.4 4.0 57 77-136 25-84 (111)
320 cd03037 GST_N_GRX2 GST_N famil 28.4 44 0.00096 19.8 1.7 16 73-88 4-19 (71)
321 PRK00694 4-hydroxy-3-methylbut 28.4 1.4E+02 0.0031 26.5 5.2 64 67-137 29-93 (606)
322 PF03544 TonB_C: Gram-negative 28.2 27 0.00058 21.3 0.7 15 169-183 19-33 (79)
323 TIGR01352 tonB_Cterm TonB fami 28.1 86 0.0019 18.6 3.0 14 170-183 14-27 (74)
324 PF14202 TnpW: Transposon-enco 28.0 87 0.0019 16.6 2.5 21 184-204 17-37 (37)
325 PRK10144 formate-dependent nit 27.9 93 0.002 21.6 3.3 16 116-131 74-89 (126)
326 cd08344 MhqB_like_N N-terminal 27.8 75 0.0016 20.7 2.9 18 170-187 93-110 (112)
327 PRK14324 glmM phosphoglucosami 27.7 2E+02 0.0044 24.5 6.1 13 49-61 108-120 (446)
328 PRK14316 glmM phosphoglucosami 27.7 3.8E+02 0.0082 22.8 7.7 11 49-59 109-119 (448)
329 PLN03207 stomagen; Provisional 27.6 61 0.0013 21.4 2.2 32 45-79 46-77 (113)
330 PF13103 TonB_2: TonB C termin 27.0 1E+02 0.0023 19.0 3.3 14 170-183 30-43 (85)
331 PF05228 CHASE4: CHASE4 domain 26.7 83 0.0018 22.1 3.1 13 170-182 52-64 (161)
332 COG4607 CeuA ABC-type enteroch 26.4 1.5E+02 0.0033 24.0 4.6 32 43-75 37-68 (320)
333 TIGR02171 Fb_sc_TIGR02171 Fibr 26.4 1.9E+02 0.0041 27.3 5.7 42 68-109 786-831 (912)
334 PRK12359 flavodoxin FldB; Prov 26.4 2.1E+02 0.0045 21.0 5.2 15 187-201 151-165 (172)
335 PF13623 SurA_N_2: SurA N-term 26.3 49 0.0011 23.5 1.8 15 51-65 41-55 (145)
336 TIGR03027 pepcterm_export puta 26.2 90 0.002 22.5 3.2 32 170-201 21-57 (165)
337 COG1885 Uncharacterized protei 25.6 53 0.0011 21.9 1.6 18 67-84 41-58 (115)
338 PF11760 CbiG_N: Cobalamin syn 25.4 1.7E+02 0.0038 18.7 4.0 34 169-202 39-74 (84)
339 KOG3446 NADH:ubiquinone oxidor 25.4 1.9E+02 0.0042 18.6 6.1 64 116-203 27-96 (97)
340 PF03470 zf-XS: XS zinc finger 25.1 28 0.0006 19.3 0.3 6 78-83 1-6 (43)
341 KOG0805 Carbon-nitrogen hydrol 24.9 3.5E+02 0.0077 21.4 10.1 110 67-189 17-148 (337)
342 PF05984 Cytomega_UL20A: Cytom 24.7 79 0.0017 20.2 2.2 21 6-26 1-21 (100)
343 PF13624 SurA_N_3: SurA N-term 24.7 19 0.00042 25.4 -0.6 19 47-65 38-56 (154)
344 COG5510 Predicted small secret 24.7 76 0.0017 17.5 1.9 21 6-26 2-22 (44)
345 COG0552 FtsY Signal recognitio 24.5 4.1E+02 0.0088 22.0 8.5 111 65-200 136-246 (340)
346 PF01206 TusA: Sulfurtransfera 24.4 1.6E+02 0.0036 17.4 4.2 48 81-136 10-57 (70)
347 PF12617 LdpA_C: Iron-Sulfur b 24.0 2.6E+02 0.0057 20.8 5.2 37 84-128 19-57 (183)
348 PF10050 DUF2284: Predicted me 23.9 1.9E+02 0.0042 20.9 4.6 33 73-108 27-61 (166)
349 PF02743 Cache_1: Cache domain 23.8 45 0.00098 20.5 1.1 15 170-184 55-69 (81)
350 TIGR01753 flav_short flavodoxi 23.8 2.4E+02 0.0052 19.0 5.0 9 118-126 99-107 (140)
351 PF13459 Fer4_15: 4Fe-4S singl 23.7 1.7E+02 0.0036 17.2 4.0 37 166-203 16-57 (65)
352 COG3634 AhpF Alkyl hydroperoxi 23.6 4.5E+02 0.0098 22.2 7.0 28 64-91 114-141 (520)
353 cd08345 Fosfomycin_RP Fosfomyc 23.5 99 0.0021 19.9 2.8 18 170-187 95-112 (113)
354 PF03259 Robl_LC7: Roadblock/L 23.3 83 0.0018 19.6 2.3 15 169-183 16-30 (91)
355 PF06342 DUF1057: Alpha/beta h 23.2 1.3E+02 0.0027 24.3 3.6 53 69-126 37-94 (297)
356 cd05802 GlmM GlmM is a bacteri 23.1 4.6E+02 0.01 22.2 7.7 12 49-60 106-117 (434)
357 PRK11869 2-oxoacid ferredoxin 23.1 57 0.0012 26.0 1.8 23 74-97 7-29 (280)
358 PF06356 DUF1064: Protein of u 23.1 2.1E+02 0.0046 19.6 4.3 26 164-189 61-87 (118)
359 COG3411 Ferredoxin [Energy pro 23.0 1.5E+02 0.0033 17.9 3.2 29 169-202 18-46 (64)
360 COG5633 Predicted periplasmic 23.0 2.6E+02 0.0056 19.2 4.6 36 42-77 40-81 (123)
361 PRK14323 glmM phosphoglucosami 23.0 2.5E+02 0.0054 23.9 5.7 12 49-60 111-122 (440)
362 cd03422 YedF YedF is a bacteri 22.9 1.8E+02 0.004 17.4 4.0 46 81-134 9-54 (69)
363 PRK10887 glmM phosphoglucosami 22.9 2.9E+02 0.0063 23.5 6.1 12 49-60 108-119 (443)
364 PF14903 WG_beta_rep: WG conta 22.9 60 0.0013 16.1 1.3 11 173-183 3-13 (35)
365 cd07244 FosA FosA, a Fosfomyci 22.7 86 0.0019 20.7 2.4 19 170-188 94-112 (121)
366 PF13894 zf-C2H2_4: C2H2-type 22.7 15 0.00033 16.3 -1.0 16 78-93 3-18 (24)
367 PF13798 PCYCGC: Protein of un 22.5 93 0.002 22.5 2.5 42 72-133 108-149 (158)
368 KOG2893 Zn finger protein [Gen 22.5 32 0.0007 26.7 0.3 27 75-101 10-36 (341)
369 CHL00133 psbV photosystem II c 22.3 23 0.0005 25.8 -0.5 26 53-82 39-67 (163)
370 PRK06183 mhpA 3-(3-hydroxyphen 21.8 5.4E+02 0.012 22.4 10.9 33 42-74 413-446 (538)
371 PRK14048 ferrichrome/ferrioxam 21.6 1.9E+02 0.0041 23.8 4.7 22 48-69 31-52 (374)
372 PF06491 Disulph_isomer: Disul 21.5 1.9E+02 0.0042 20.3 3.8 33 169-202 97-133 (136)
373 PF04723 GRDA: Glycine reducta 21.5 1.3E+02 0.0029 21.3 3.1 37 70-106 32-75 (150)
374 TIGR01455 glmM phosphoglucosam 21.3 3.1E+02 0.0068 23.3 6.0 12 49-60 107-118 (443)
375 TIGR00495 crvDNA_42K 42K curve 21.3 1.6E+02 0.0034 24.8 4.1 20 165-184 317-336 (389)
376 PRK15126 thiamin pyrimidine py 21.3 3.9E+02 0.0085 20.6 9.6 41 81-134 21-61 (272)
377 COG3117 Uncharacterized protei 21.1 1.6E+02 0.0036 22.0 3.7 7 67-73 80-86 (188)
378 cd07252 BphC1-RGP6_N_like N-te 21.1 1E+02 0.0022 20.3 2.6 18 170-187 101-118 (120)
379 cd09011 Glo_EDI_BRP_like_23 Th 21.1 1.1E+02 0.0023 20.2 2.6 17 169-185 102-118 (120)
380 PRK08671 methionine aminopepti 21.1 1.1E+02 0.0025 24.3 3.2 70 85-181 218-288 (291)
381 PF11453 DUF2950: Protein of u 20.9 1.2E+02 0.0027 24.0 3.1 28 170-198 233-260 (271)
382 TIGR02652 conserved hypothetic 20.9 28 0.00061 24.6 -0.3 18 76-93 10-27 (163)
383 PF06018 CodY: CodY GAF-like d 20.7 1.7E+02 0.0037 21.6 3.7 26 170-195 37-63 (177)
384 TIGR02000 NifU_proper Fe-S clu 20.7 3.1E+02 0.0068 22.0 5.5 41 55-96 238-278 (290)
385 PF09654 DUF2396: Protein of u 20.5 29 0.00062 24.5 -0.3 18 76-93 7-24 (161)
386 PRK14315 glmM phosphoglucosami 20.4 3.5E+02 0.0075 23.1 6.1 12 49-60 111-122 (448)
387 cd03423 SirA SirA (also known 20.3 2.1E+02 0.0046 17.1 4.3 46 81-134 9-54 (69)
388 PF06122 TraH: Conjugative rel 20.2 53 0.0012 27.2 1.1 23 75-97 94-116 (361)
389 COG1013 PorB Pyruvate:ferredox 20.1 75 0.0016 25.6 1.9 21 75-96 15-35 (294)
390 cd03045 GST_N_Delta_Epsilon GS 20.1 1E+02 0.0022 18.2 2.2 30 72-106 3-32 (74)
No 1
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=100.00 E-value=7.2e-34 Score=216.98 Aligned_cols=162 Identities=74% Similarity=1.228 Sum_probs=143.6
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEI 121 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~ 121 (204)
.++.+|+|++.|.+|+.+++++++||++||+||++|||+|..+++.|++++++++++++++|+|++|.+..+++++.+++
T Consensus 75 ~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei 154 (236)
T PLN02399 75 TEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 154 (236)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999998777777889999
Q ss_pred HHHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhh
Q 028736 122 QEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 201 (204)
++|+.++++.+||++.+.|.++......|++++...++..++.+.|+|++||||++|+|++++.|..+++++++.|+++|
T Consensus 155 ~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 155 KQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred HHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 99986667999999865667777777788877554444434467889999999999999999999999999999999998
Q ss_pred hc
Q 028736 202 GS 203 (204)
Q Consensus 202 ~~ 203 (204)
+.
T Consensus 235 ~~ 236 (236)
T PLN02399 235 AA 236 (236)
T ss_pred cC
Confidence 63
No 2
>PLN02412 probable glutathione peroxidase
Probab=100.00 E-value=3.6e-33 Score=204.84 Aligned_cols=162 Identities=85% Similarity=1.355 Sum_probs=143.5
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEI 121 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~ 121 (204)
....+|+|++.+.+|+.+++++++||++||+||++|||.|..+++.|++++++|+++++.|++|++|++.+++.++.+++
T Consensus 5 ~~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~ 84 (167)
T PLN02412 5 SPKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEI 84 (167)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999998777777788888
Q ss_pred HHHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhh
Q 028736 122 QEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 201 (204)
.++..++++.+||++.+.|.++......|+++.....+..+.++.++|++||||++|+|++++.|..++++++..|+++|
T Consensus 85 ~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 85 QQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred HHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 77765667999999966677876778888888776555555568889999999999999999999999999999999998
Q ss_pred hc
Q 028736 202 GS 203 (204)
Q Consensus 202 ~~ 203 (204)
++
T Consensus 165 ~~ 166 (167)
T PLN02412 165 GQ 166 (167)
T ss_pred hh
Confidence 65
No 3
>PTZ00056 glutathione peroxidase; Provisional
Probab=100.00 E-value=4e-32 Score=204.17 Aligned_cols=162 Identities=43% Similarity=0.741 Sum_probs=139.3
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEI 121 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~ 121 (204)
.+..+|+|++.|.+|+.+++++++||++||+||++|||+|+.+++.|+++++++++++++||+|+++.+...+.++.+++
T Consensus 15 ~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~ 94 (199)
T PTZ00056 15 LRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDI 94 (199)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999988777777889999
Q ss_pred HHHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCcc---c--cccccceeeEEECCCCcEEEecCCCCChhHHHHH
Q 028736 122 QEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFL---G--DAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKD 196 (204)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~--~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~ 196 (204)
++|++ +++.+||++.+.+.++.....++.+++......+ + ..+.+.|++||||++|+|++++.|..+++.+.+.
T Consensus 95 ~~f~~-~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~ 173 (199)
T PTZ00056 95 RKFND-KNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKK 173 (199)
T ss_pred HHHHH-HcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHH
Confidence 99995 5699999997666777777777777654332111 1 2355667899999999999999999899999999
Q ss_pred HHHhhhcC
Q 028736 197 IQNLLGSC 204 (204)
Q Consensus 197 l~~ll~~~ 204 (204)
|+++++++
T Consensus 174 I~~ll~~~ 181 (199)
T PTZ00056 174 IAELLGVK 181 (199)
T ss_pred HHHHHHHH
Confidence 99998753
No 4
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.98 E-value=2.8e-31 Score=192.19 Aligned_cols=150 Identities=65% Similarity=1.123 Sum_probs=122.9
Q ss_pred ccceEEecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHH
Q 028736 46 IYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVA 125 (204)
Q Consensus 46 ~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~ 125 (204)
+|+|++.|.+|+.+++++++||++||+||++||| |+.+++.|++++++++++++.+|+|+++.+..+++++.+++++|+
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~ 80 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFC 80 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHH
Confidence 6899999999999999999999999999999999 999999999999999988999999998876555567889999999
Q ss_pred HhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHH
Q 028736 126 CTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKD 196 (204)
Q Consensus 126 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~ 196 (204)
+++++.+||++.+.|.++......|+++......+.++.+.+.|++||||++|+|++++.|..+.+++++.
T Consensus 81 ~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 81 ETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred HHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 66469999999544445554455666544333322223455667999999999999999999888776653
No 5
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.97 E-value=1.3e-30 Score=192.49 Aligned_cols=157 Identities=45% Similarity=0.814 Sum_probs=142.6
Q ss_pred cccceEEecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHH
Q 028736 45 SIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEV 124 (204)
Q Consensus 45 ~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~ 124 (204)
.+++|++.+.+|+.+++++++||++||.||||||+.|. +++.|++++++|++++++|++|+++.|+.+++++.+++++|
T Consensus 4 ~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f 82 (183)
T PRK10606 4 SILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTY 82 (183)
T ss_pred CccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHH
Confidence 58899999999999999999999999999999999996 79999999999999999999999999999999999999999
Q ss_pred HHhhcCccccceeeccCCCCCchhHHHHHHhhcCC--------------------ccccccccceeeEEECCCCcEEEec
Q 028736 125 ACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGG--------------------FLGDAIKWNFTKFLVNKEGKVVERY 184 (204)
Q Consensus 125 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--------------------~~~~~i~~~P~~~lid~~G~i~~~~ 184 (204)
++.+++.+||++.+.|.+|+....+|.|++...+. ..+..|.|+-+-||||++|+++.++
T Consensus 83 ~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r~ 162 (183)
T PRK10606 83 CRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRF 162 (183)
T ss_pred HHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEEE
Confidence 97568999999999999999999999999865541 1124689999999999999999999
Q ss_pred CCCCChhH--HHHHHHHhhh
Q 028736 185 APTTSPLK--IEKDIQNLLG 202 (204)
Q Consensus 185 ~g~~~~~~--~~~~l~~ll~ 202 (204)
.+...+.. +++.|+++|.
T Consensus 163 ~~~~~p~~~~i~~~i~~~l~ 182 (183)
T PRK10606 163 SPDMTPEDPIVMESIKLALA 182 (183)
T ss_pred CCCCCCCHHHHHHHHHHHhc
Confidence 99887776 9999998874
No 6
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.97 E-value=2.3e-30 Score=192.68 Aligned_cols=162 Identities=44% Similarity=0.768 Sum_probs=136.2
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEE-EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRGKVL-LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEE 120 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~gk~~-lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~ 120 (204)
.+..+|+|++.+.+|+.+++++++||++ |+.+|++|||+|+.++|.|++++++++++++.+|+|++|.+..+++++.++
T Consensus 16 ~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~ 95 (183)
T PTZ00256 16 PTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPE 95 (183)
T ss_pred CCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHH
Confidence 4567999999999999999999999965 456799999999999999999999999889999999998766666667889
Q ss_pred HHHHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCc--ccccccccee---eEEECCCCcEEEecCCCCChhHHHH
Q 028736 121 IQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGF--LGDAIKWNFT---KFLVNKEGKVVERYAPTTSPLKIEK 195 (204)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~i~~~P~---~~lid~~G~i~~~~~g~~~~~~~~~ 195 (204)
+++|+.++++.+||++.+.|.++......|+++....... ..+++..+|+ +||||++|+|++++.|..+.+.+.+
T Consensus 96 ~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~ 175 (183)
T PTZ00256 96 IKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQ 175 (183)
T ss_pred HHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHH
Confidence 9999876779999999766778877778888776654321 1125666784 6999999999999999999999999
Q ss_pred HHHHhhhc
Q 028736 196 DIQNLLGS 203 (204)
Q Consensus 196 ~l~~ll~~ 203 (204)
.|+++|+.
T Consensus 176 ~I~~ll~~ 183 (183)
T PTZ00256 176 DIEKLLNA 183 (183)
T ss_pred HHHHHhcC
Confidence 99998863
No 7
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.97 E-value=6e-30 Score=185.47 Aligned_cols=148 Identities=46% Similarity=0.771 Sum_probs=125.2
Q ss_pred ccceEEecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHH
Q 028736 46 IYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVA 125 (204)
Q Consensus 46 ~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~ 125 (204)
+.+|++.+.+|+.+++++++||++||+||++|||+|..+++.|++++++++++++.+++|+++.++.+++++.+.+++|+
T Consensus 2 ~~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999998999999998777677678899999999
Q ss_pred HhhcCccccceeeccCCCCCchhHHHHHHhhcCCcccccccccee----eEEECCCCcEEEecCCCCChhHHHHHHHHhh
Q 028736 126 CTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFT----KFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 126 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~----~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 201 (204)
+++++.+||++.+.+..+......|++.... ...+|+ +||||++|+|+.++.|..+.+++.+.|++++
T Consensus 82 ~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~--------~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 82 RRNYGVTFPMFSKIKILGSEAEPAFRFLVDS--------SKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred HHhcCCCCCccceEecCCCCCCcHHHHHHhc--------CCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 6546999999854444454555555654321 122466 9999999999999999999999999998875
No 8
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.96 E-value=3.2e-29 Score=186.96 Aligned_cols=135 Identities=17% Similarity=0.183 Sum_probs=111.6
Q ss_pred CCCcccceEEecCCC--CeeecCCC-CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCH
Q 028736 42 APKSIYDFTVKDIRG--NDVSLSGY-RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSN 118 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g--~~~~l~~~-~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~ 118 (204)
.|.++|+|++.+.+| +.++++++ +||+++|+||++|||+|+.++|.++++.+ +++++|+|+.+ ++.
T Consensus 41 ~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v~~~-------~~~ 109 (185)
T PRK15412 41 IGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGMNYK-------DDR 109 (185)
T ss_pred cCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEEECC-------CCH
Confidence 789999999999984 66776665 79999999999999999999999988864 37999999975 367
Q ss_pred HHHHHHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHH
Q 028736 119 EEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQ 198 (204)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~ 198 (204)
+.+++|+++ ++.+|+++. .|..+..... +++..+|++|+||++|+|++++.|..+.+++++.++
T Consensus 110 ~~~~~~~~~-~~~~~~~~~-~D~~~~~~~~--------------~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~ 173 (185)
T PRK15412 110 QKAISWLKE-LGNPYALSL-FDGDGMLGLD--------------LGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIK 173 (185)
T ss_pred HHHHHHHHH-cCCCCceEE-EcCCccHHHh--------------cCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHH
Confidence 889999955 589998642 4555443222 267788999999999999999999999999999998
Q ss_pred Hhhhc
Q 028736 199 NLLGS 203 (204)
Q Consensus 199 ~ll~~ 203 (204)
.++++
T Consensus 174 ~~~~~ 178 (185)
T PRK15412 174 PLWEK 178 (185)
T ss_pred HHHHH
Confidence 88754
No 9
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.2e-28 Score=168.57 Aligned_cols=158 Identities=61% Similarity=1.071 Sum_probs=150.4
Q ss_pred cccceEEecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHH
Q 028736 45 SIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEV 124 (204)
Q Consensus 45 ~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~ 124 (204)
.+.+|++++.+|+++++++++||++||.-.||.|..-+ +...|+.|+++|+++|++|+++.+++|.+++|++.+++++|
T Consensus 4 ~~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~f 82 (162)
T COG0386 4 SIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKF 82 (162)
T ss_pred ccccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHH
Confidence 46789999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhhcCccccceeeccCCCCCchhHHHHHHhhcCC-ccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhhhc
Q 028736 125 ACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGG-FLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLGS 203 (204)
Q Consensus 125 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~~ 203 (204)
+...||.+||++...+.+|+.+..+|.+++.+..+ ..+..|.|+-+-||||++|+|+.++.....|+++...|+++|++
T Consensus 83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~~ 162 (162)
T COG0386 83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLAE 162 (162)
T ss_pred HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhcC
Confidence 99999999999999999999999999999988876 44568999999999999999999999999999999999999863
No 10
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.96 E-value=5.2e-28 Score=178.63 Aligned_cols=135 Identities=21% Similarity=0.390 Sum_probs=118.4
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEI 121 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~ 121 (204)
.|..+|+|++.+.+|+.+++++++||+++|+||++||+.|+.+.+.++++++++.+.++.+++|+.|. +.+.+
T Consensus 37 ~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~-------~~~~~ 109 (173)
T PRK03147 37 VGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDE-------TELAV 109 (173)
T ss_pred CCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCC-------CHHHH
Confidence 78999999999999999999999999999999999999999999999999999998889999999873 77899
Q ss_pred HHHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHh
Q 028736 122 QEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNL 200 (204)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 200 (204)
++|+++ ++.+|+++ .|..+..... +++.++|++|+||++|+++..+.|..+.+++.+.|+++
T Consensus 110 ~~~~~~-~~~~~~~~--~d~~~~~~~~--------------~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 110 KNFVNR-YGLTFPVA--IDKGRQVIDA--------------YGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred HHHHHH-hCCCceEE--ECCcchHHHH--------------cCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 999954 59999988 4554433322 27788899999999999999999999988888888764
No 11
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.1e-26 Score=160.15 Aligned_cols=162 Identities=69% Similarity=1.123 Sum_probs=154.5
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEI 121 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~ 121 (204)
....+.+|+.+|.+|+.++++.++||++||.-.||.|..-......|+.|+++|+++|++|++..++.|+++||.+.+++
T Consensus 10 ~~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei 89 (171)
T KOG1651|consen 10 EKGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEI 89 (171)
T ss_pred hhcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHH
Confidence 34568899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred HHHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhh
Q 028736 122 QEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 201 (204)
..++..+++..||++...|.+|+....+|.+++....+..+..|.|+-+-||||+||+++.+|....++..+..+|+++|
T Consensus 90 ~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL 169 (171)
T KOG1651|consen 90 LNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLL 169 (171)
T ss_pred HHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHh
Confidence 99999999999999999999999999999999999999888899999999999999999999999888889999999988
Q ss_pred hc
Q 028736 202 GS 203 (204)
Q Consensus 202 ~~ 203 (204)
+.
T Consensus 170 ~~ 171 (171)
T KOG1651|consen 170 AQ 171 (171)
T ss_pred cC
Confidence 63
No 12
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.94 E-value=6.2e-26 Score=167.55 Aligned_cols=135 Identities=17% Similarity=0.173 Sum_probs=109.4
Q ss_pred cCCCcccceEEecCCCCee--ecCCC-CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCC
Q 028736 41 EAPKSIYDFTVKDIRGNDV--SLSGY-RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGS 117 (204)
Q Consensus 41 ~~~~~~p~~~l~~~~g~~~--~l~~~-~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~ 117 (204)
..|.++|+|++.+.+|+.. +++++ +||+++|+||++|||+|+.+++.++++.++ ++.+|+|+.+ ++
T Consensus 35 ~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~~~vi~V~~~-------~~ 103 (173)
T TIGR00385 35 LIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD----GLPIVGVDYK-------DQ 103 (173)
T ss_pred hcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc----CCEEEEEECC-------CC
Confidence 3889999999999999744 44464 789999999999999999999999888653 6999999875 35
Q ss_pred HHHHHHHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHH
Q 028736 118 NEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 197 (204)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l 197 (204)
.++.++|+++ ++.+|+.+. .|..+..... +++..+|++|+||++|+|++++.|..+.+++.+.|
T Consensus 104 ~~~~~~~~~~-~~~~f~~v~-~D~~~~~~~~--------------~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l 167 (173)
T TIGR00385 104 SQNALKFLKE-LGNPYQAIL-IDPNGKLGLD--------------LGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGF 167 (173)
T ss_pred hHHHHHHHHH-cCCCCceEE-ECCCCchHHh--------------cCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHH
Confidence 6777889955 588898542 4555543332 26667899999999999999999999999999999
Q ss_pred HHhhh
Q 028736 198 QNLLG 202 (204)
Q Consensus 198 ~~ll~ 202 (204)
++++.
T Consensus 168 ~~~~~ 172 (173)
T TIGR00385 168 LPAME 172 (173)
T ss_pred HHHhh
Confidence 98874
No 13
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.94 E-value=8.3e-27 Score=167.68 Aligned_cols=123 Identities=32% Similarity=0.480 Sum_probs=102.9
Q ss_pred CCCcccceEEec--CCCCeeecCCCCCcEEEEEEecc-CCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCH
Q 028736 42 APKSIYDFTVKD--IRGNDVSLSGYRGKVLLVVNVAS-KCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSN 118 (204)
Q Consensus 42 ~~~~~p~~~l~~--~~g~~~~l~~~~gk~~lv~f~~t-~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~ 118 (204)
+|+.+|+|++++ .+|+.+++++++||++||+||++ |||+|..+++.+++++++++..++.+|+|+.++ ++
T Consensus 2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~-------~~ 74 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDD-------DP 74 (146)
T ss_dssp TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESS-------SH
T ss_pred CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccC-------CH
Confidence 789999999965 99999999999999999999999 999999999999999999999999999999863 33
Q ss_pred HHHHHHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccc---------cceeeEEECCCCcEEEecCCCCC
Q 028736 119 EEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIK---------WNFTKFLVNKEGKVVERYAPTTS 189 (204)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~---------~~P~~~lid~~G~i~~~~~g~~~ 189 (204)
. +++|+++ ++.+|+++ .|.++..... + ++. .+|++++||++|+|++.+.|..+
T Consensus 75 ~-~~~~~~~-~~~~~~~~--~D~~~~~~~~----~----------~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 75 P-VREFLKK-YGINFPVL--SDPDGALAKA----L----------GVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp H-HHHHHHH-TTTTSEEE--EETTSHHHHH----T----------TCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred H-HHHHHHh-hCCCceEE--echHHHHHHH----h----------CCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 3 9999955 59999998 5544333222 1 333 78999999999999999988766
No 14
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.94 E-value=8.5e-26 Score=189.17 Aligned_cols=137 Identities=20% Similarity=0.203 Sum_probs=112.2
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEI 121 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~ 121 (204)
.++.+|+|++.|.+|+.+.++ +||++||+|||+||++|+.++|.|++++++++..++.||+|+++.... ..+.+++
T Consensus 34 ~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~--e~~~~~~ 109 (521)
T PRK14018 34 VPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLH--EKKDGDF 109 (521)
T ss_pred ccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccc--cccHHHH
Confidence 667899999999999999988 899999999999999999999999999999987789999999764322 2356778
Q ss_pred HHHHHhhcCc-cccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHH
Q 028736 122 QEVACTMFKA-EFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQN 199 (204)
Q Consensus 122 ~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ 199 (204)
++|+.+. +. .++++ .|..+..... .+|..+|+++|||++|+|+..+.|..+.+++.+.|+.
T Consensus 110 ~~~~~~~-~y~~~pV~--~D~~~~lak~--------------fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 110 QKWYAGL-DYPKLPVL--TDNGGTLAQS--------------LNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HHHHHhC-CCccccee--ccccHHHHHH--------------cCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 8888543 43 46766 4554433222 3788899999999999999999999999888887773
No 15
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.94 E-value=1.1e-25 Score=166.00 Aligned_cols=144 Identities=24% Similarity=0.354 Sum_probs=119.1
Q ss_pred CCcccceEEecCCCCeeecCCC-CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHH
Q 028736 43 PKSIYDFTVKDIRGNDVSLSGY-RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEI 121 (204)
Q Consensus 43 ~~~~p~~~l~~~~g~~~~l~~~-~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~ 121 (204)
|..+|+|++.+.+|+.++++++ +||++||+||++|||.|..+++.|+++++++++.++.+|+|++|+...++.++.+++
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~ 80 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENM 80 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHH
Confidence 5679999999999999999998 889999999999999999999999999999998889999999986444444689999
Q ss_pred HHHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecC---------CCCChhH
Q 028736 122 QEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYA---------PTTSPLK 192 (204)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~---------g~~~~~~ 192 (204)
++|++ +++.+|+++ .|..+.... . +++.+.|++||||++|+|++.+. +..+.+.
T Consensus 81 ~~~~~-~~~~~~~~l--~D~~~~~~~-~-------------~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 143 (171)
T cd02969 81 KAKAK-EHGYPFPYL--LDETQEVAK-A-------------YGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRD 143 (171)
T ss_pred HHHHH-HCCCCceEE--ECCchHHHH-H-------------cCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHH
Confidence 99996 569999999 455543222 1 26677899999999999998741 2235577
Q ss_pred HHHHHHHhhhc
Q 028736 193 IEKDIQNLLGS 203 (204)
Q Consensus 193 ~~~~l~~ll~~ 203 (204)
+.+.|+++|++
T Consensus 144 ~~~~i~~~l~~ 154 (171)
T cd02969 144 LRAALDALLAG 154 (171)
T ss_pred HHHHHHHHHcC
Confidence 99999998864
No 16
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.8e-25 Score=158.07 Aligned_cols=145 Identities=19% Similarity=0.239 Sum_probs=115.2
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEec-cCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVA-SKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEE 120 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~-t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~ 120 (204)
+|+++|+|++.+++|+.++|++++||++|++|+. .++|.|..|.-.+++.+.++.+.+.+|++||.| +++.
T Consensus 6 ~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~D--------s~~~ 77 (157)
T COG1225 6 VGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPD--------SPKS 77 (157)
T ss_pred CCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCC--------CHHH
Confidence 8999999999999999999999999999999986 899999999999999999999999999999964 7999
Q ss_pred HHHHHHhhcCccccceeeccCCCCCchhHHHHHH-hhcCCccccccccceeeEEECCCCcEEEecCCCC---ChhHHHHH
Q 028736 121 IQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLK-SEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT---SPLKIEKD 196 (204)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~---~~~~~~~~ 196 (204)
.++|.+ +++.+|+++ +|..... .+.|+..+ ...++....+ ..+.+||||++|+|++.+.... +.+++.+.
T Consensus 78 ~~~F~~-k~~L~f~LL--SD~~~~v-~~~ygv~~~k~~~gk~~~~--~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~ 151 (157)
T COG1225 78 HKKFAE-KHGLTFPLL--SDEDGEV-AEAYGVWGEKKMYGKEYMG--IERSTFVIDPDGKIRYVWRKVKVKGHADEVLAA 151 (157)
T ss_pred HHHHHH-HhCCCceee--ECCcHHH-HHHhCcccccccCcccccc--ccceEEEECCCCeEEEEecCCCCcccHHHHHHH
Confidence 999995 569999999 5666653 45555443 2222221112 2489999999999999984433 33345555
Q ss_pred HHHh
Q 028736 197 IQNL 200 (204)
Q Consensus 197 l~~l 200 (204)
|+++
T Consensus 152 l~~l 155 (157)
T COG1225 152 LKKL 155 (157)
T ss_pred HHHh
Confidence 5544
No 17
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.93 E-value=4e-25 Score=160.33 Aligned_cols=143 Identities=19% Similarity=0.227 Sum_probs=109.0
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEecc-CCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVAS-KCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEE 120 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t-~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~ 120 (204)
.|+.+|+|++.+.+|+.+++++++||++||+||++ |||.|+.+++.+++++++++++++++|+|+.| ++++
T Consensus 6 ~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d--------~~~~ 77 (154)
T PRK09437 6 AGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD--------KPEK 77 (154)
T ss_pred CCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CHHH
Confidence 78999999999999999999999999999999987 67779999999999999999889999999965 6789
Q ss_pred HHHHHHhhcCccccceeeccCCCCCchhHHHHHHhhc-CCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHH
Q 028736 121 IQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEK-GGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQ 198 (204)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~ 198 (204)
+++|+++ ++.+|+++ .|..+... +.|+...... .+.....+ .|++||||++|+|++.+.|....+.+.+.|+
T Consensus 78 ~~~~~~~-~~~~~~~l--~D~~~~~~-~~~gv~~~~~~~~~~~~~~--~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~ 150 (154)
T PRK09437 78 LSRFAEK-ELLNFTLL--SDEDHQVA-EQFGVWGEKKFMGKTYDGI--HRISFLIDADGKIEHVFDKFKTSNHHDVVLD 150 (154)
T ss_pred HHHHHHH-hCCCCeEE--ECCCchHH-HHhCCCcccccccccccCc--ceEEEEECCCCEEEEEEcCCCcchhHHHHHH
Confidence 9999965 49999998 45554432 2232211000 00000011 2788999999999999988766655444443
No 18
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.93 E-value=1.9e-25 Score=156.05 Aligned_cols=123 Identities=28% Similarity=0.438 Sum_probs=101.4
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEecc-CCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVAS-KCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEE 120 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t-~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~ 120 (204)
+|+++|+|++++.+|+.+++++++||++||.||++ |||.|..+++.|+++++++++.++.+++|+.| +.++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d--------~~~~ 72 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD--------DPEE 72 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------SHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc--------cccc
Confidence 48899999999999999999999999999999999 99999999999999999999989999999975 5778
Q ss_pred HHHHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEe
Q 028736 121 IQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVER 183 (204)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~ 183 (204)
+++|++++ +.+||++ .|..+..... |+.... .....+|++||||++|+|+++
T Consensus 73 ~~~~~~~~-~~~~~~~--~D~~~~~~~~-~~~~~~-------~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 73 IKQFLEEY-GLPFPVL--SDPDGELAKA-FGIEDE-------KDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHHHHH-TCSSEEE--EETTSHHHHH-TTCEET-------TTSEESEEEEEEETTSBEEEE
T ss_pred hhhhhhhh-ccccccc--cCcchHHHHH-cCCccc-------cCCceEeEEEEECCCCEEEeC
Confidence 99999654 8999999 5544433222 111000 012267999999999999974
No 19
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.93 E-value=4.3e-25 Score=157.58 Aligned_cols=138 Identities=25% Similarity=0.342 Sum_probs=109.0
Q ss_pred CcccceEEecCCCCeeecCCCCCcEEEEEEe-ccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHH
Q 028736 44 KSIYDFTVKDIRGNDVSLSGYRGKVLLVVNV-ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQ 122 (204)
Q Consensus 44 ~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~-~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~ 122 (204)
+++|+|++.+.+|+.+++++++||+++|+|| ++|||.|+.+++.++++++++.+.++.+|+|+.| +++.++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d--------~~~~~~ 72 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD--------SVESHA 72 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CHHHHH
Confidence 3689999999999999999999999999999 4899999999999999999999889999999975 578899
Q ss_pred HHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHH
Q 028736 123 EVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 197 (204)
Q Consensus 123 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l 197 (204)
+|+++ ++.+|+++ .|.++... ..|+....... ......|++||||++|+|++.+.|....+.+.+.|
T Consensus 73 ~~~~~-~~~~~~~l--~D~~~~~~-~~~gv~~~~~~----~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 73 KFAEK-YGLPFPLL--SDPDGKLA-KAYGVWGEKKK----KYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred HHHHH-hCCCceEE--ECCccHHH-HHhCCcccccc----ccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 99965 59999988 55554332 22221111000 01122399999999999999999988777777665
No 20
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.92 E-value=8.9e-25 Score=153.52 Aligned_cols=123 Identities=14% Similarity=0.167 Sum_probs=101.5
Q ss_pred cccceEEecCCC--CeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHH
Q 028736 45 SIYDFTVKDIRG--NDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQ 122 (204)
Q Consensus 45 ~~p~~~l~~~~g--~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~ 122 (204)
++|+|++.+.+| +.+++++++||+++|+||++|||.|+.+++.++++.+++ ++.+|+|+.+ ++.+.++
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~-------~~~~~~~ 71 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYK-------DNPENAL 71 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECC-------CCHHHHH
Confidence 589999999999 889999999999999999999999999999999998875 3999999975 4788999
Q ss_pred HHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHH
Q 028736 123 EVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKI 193 (204)
Q Consensus 123 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~ 193 (204)
+|++ +++..|+.+. .|..+..... +++..+|++|+||++|+++.++.|..+.+.+
T Consensus 72 ~~~~-~~~~~~~~~~-~D~~~~~~~~--------------~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 72 AWLA-RHGNPYAAVG-FDPDGRVGID--------------LGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred HHHH-hcCCCCceEE-ECCcchHHHh--------------cCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 9995 4588886442 4544433222 2677789999999999999999998876543
No 21
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.92 E-value=9.7e-24 Score=157.82 Aligned_cols=129 Identities=12% Similarity=0.136 Sum_probs=99.1
Q ss_pred CCCcccceEEecCCCCeeecC--CCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLS--GYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNE 119 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~--~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~ 119 (204)
+|+.+|+|+++|.+|+.++++ +.+||+++|+||++|||+|+.++|.+++++++. ++.+++|+. ++++
T Consensus 48 vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~--------~~~~ 116 (189)
T TIGR02661 48 VGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISD--------GTPA 116 (189)
T ss_pred CCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeC--------CCHH
Confidence 899999999999999999995 569999999999999999999999999988753 477888873 4678
Q ss_pred HHHHHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHH
Q 028736 120 EIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQN 199 (204)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ 199 (204)
++++|+++ ++.+++.+. ..++ ..+. +++..+|++|+||++|+|++++.. ...+++++.|+.
T Consensus 117 ~~~~~~~~-~~~~~~~~~---~~~~-i~~~-------------y~v~~~P~~~lID~~G~I~~~g~~-~~~~~le~ll~~ 177 (189)
T TIGR02661 117 EHRRFLKD-HELGGERYV---VSAE-IGMA-------------FQVGKIPYGVLLDQDGKIRAKGLT-NTREHLESLLEA 177 (189)
T ss_pred HHHHHHHh-cCCCcceee---chhH-HHHh-------------ccCCccceEEEECCCCeEEEccCC-CCHHHHHHHHHH
Confidence 89999965 477776542 1211 1111 367778999999999999986432 244556665554
Q ss_pred h
Q 028736 200 L 200 (204)
Q Consensus 200 l 200 (204)
+
T Consensus 178 l 178 (189)
T TIGR02661 178 D 178 (189)
T ss_pred H
Confidence 4
No 22
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.92 E-value=4.9e-24 Score=157.48 Aligned_cols=141 Identities=21% Similarity=0.232 Sum_probs=106.8
Q ss_pred CCCcccceEEecCCC----CeeecCCCCCcEEEEEEe-ccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCC
Q 028736 42 APKSIYDFTVKDIRG----NDVSLSGYRGKVLLVVNV-ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPG 116 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g----~~~~l~~~~gk~~lv~f~-~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~ 116 (204)
+|+.+|+|++.+.+| +.+++++++||++||+|| ++|||.|+.+++.|+++++++.+.++.+++|++|+
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~------- 73 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS------- 73 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC-------
Confidence 478999999999887 799999999999999999 79999999999999999999998899999999763
Q ss_pred CHHHHHHHHHhh------cCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCC--
Q 028736 117 SNEEIQEVACTM------FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT-- 188 (204)
Q Consensus 117 ~~~~~~~~~~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~-- 188 (204)
.+..++|.... .+.+|+++ .|..+..... |+...... + ..+|++||||++|+|++.+.+..
T Consensus 74 -~~~~~~~~~~~~~~~~~~~~~f~~l--~D~~~~~~~~-~gv~~~~~------~-~~~p~~~lID~~G~I~~~~~~~~~~ 142 (173)
T cd03015 74 -HFSHLAWRNTPRKEGGLGKINFPLL--ADPKKKISRD-YGVLDEEE------G-VALRGTFIIDPEGIIRHITVNDLPV 142 (173)
T ss_pred -HHHHHHHHHhhhhhCCccCcceeEE--ECCchhHHHH-hCCccccC------C-ceeeEEEEECCCCeEEEEEecCCCC
Confidence 44455565431 35789988 5666554433 33221110 0 13589999999999999985543
Q ss_pred --ChhHHHHHHHHh
Q 028736 189 --SPLKIEKDIQNL 200 (204)
Q Consensus 189 --~~~~~~~~l~~l 200 (204)
+.+++.+.|+.+
T Consensus 143 ~~~~~~il~~l~~~ 156 (173)
T cd03015 143 GRSVDETLRVLDAL 156 (173)
T ss_pred CCCHHHHHHHHHHh
Confidence 345566666654
No 23
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.92 E-value=1.2e-24 Score=152.66 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=94.6
Q ss_pred CCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccc
Q 028736 56 GNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPI 135 (204)
Q Consensus 56 g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (204)
|+.+++++++||++||+||++|||+|+.+++.|++++++++++++.+|+|+.+.+.. .++.+++++|+++ ++.+||+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~--~~~~~~~~~~~~~-~~~~~p~ 89 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAF--ERDLANVKSAVLR-YGITYPV 89 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCcccc--ccCHHHHHHHHHH-cCCCCCE
Confidence 578999999999999999999999999999999999999998899999998753222 2578899999965 5999998
Q ss_pred eeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCC
Q 028736 136 FDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPT 187 (204)
Q Consensus 136 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~ 187 (204)
+ .|.++..... +++.++|++|+||++|+|++.+.|.
T Consensus 90 ~--~D~~~~~~~~--------------~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 90 A--NDNDYATWRA--------------YGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred E--ECCchHHHHH--------------hCCCcCCeEEEECCCCcEEEEEecC
Confidence 8 5555433222 2677889999999999999998774
No 24
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.92 E-value=1.1e-23 Score=154.49 Aligned_cols=142 Identities=17% Similarity=0.158 Sum_probs=104.6
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEeccC-CCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASK-CGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEE 120 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~-C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~ 120 (204)
.|+.+|+|++.+.+|+.+++++++||++||+||++| ||+|+.+++.|+++++++. ++++++|+.| ++..
T Consensus 20 ~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D--------~~~~ 89 (167)
T PRK00522 20 VGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISAD--------LPFA 89 (167)
T ss_pred CCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCC--------CHHH
Confidence 799999999999999999999999999999999999 9999999999999999984 7999999975 5677
Q ss_pred HHHHHHhhcCcc-ccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCC--CChhHHHHHH
Q 028736 121 IQEVACTMFKAE-FPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPT--TSPLKIEKDI 197 (204)
Q Consensus 121 ~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~--~~~~~~~~~l 197 (204)
.++|+++ ++.. ++++ .|..+......|+....... ..++ ..|++||||++|+|++.+.+. .+..++.+.|
T Consensus 90 ~~~f~~~-~~~~~~~~l--sD~~~~~~~~~~gv~~~~~~---~~g~-~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l 162 (167)
T PRK00522 90 QKRFCGA-EGLENVITL--SDFRDHSFGKAYGVAIAEGP---LKGL-LARAVFVLDENNKVVYSELVPEITNEPDYDAAL 162 (167)
T ss_pred HHHHHHh-CCCCCceEe--ecCCccHHHHHhCCeecccc---cCCc-eeeEEEEECCCCeEEEEEECCCcCCCCCHHHHH
Confidence 8999955 5876 6777 55433223333332211100 0011 136999999999999998543 2333455544
Q ss_pred HHh
Q 028736 198 QNL 200 (204)
Q Consensus 198 ~~l 200 (204)
+.+
T Consensus 163 ~~l 165 (167)
T PRK00522 163 AAL 165 (167)
T ss_pred HHh
Confidence 443
No 25
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.91 E-value=4.8e-24 Score=159.22 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=102.9
Q ss_pred CCCcccceEEec-CCCC--eeecCCCCCcEEEEEEe-ccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCC
Q 028736 42 APKSIYDFTVKD-IRGN--DVSLSGYRGKVLLVVNV-ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGS 117 (204)
Q Consensus 42 ~~~~~p~~~l~~-~~g~--~~~l~~~~gk~~lv~f~-~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~ 117 (204)
.|+.+|+|++.+ .+|+ .+++++++||++||+|| ++|||.|+.+++.|+++++++.+.++++|+|+.| +
T Consensus 4 ~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D--------~ 75 (187)
T TIGR03137 4 INTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD--------T 75 (187)
T ss_pred cCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC--------C
Confidence 689999999998 6786 67888999999999999 9999999999999999999999889999999976 4
Q ss_pred HHHHHHHHHhh---cCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCC----Ch
Q 028736 118 NEEIQEVACTM---FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT----SP 190 (204)
Q Consensus 118 ~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~----~~ 190 (204)
....++|.... .+.+||++ .|.++... +.|+..... .++ +.|++||||++|+|++.+.... +.
T Consensus 76 ~~~~~~~~~~~~~~~~l~fpll--sD~~~~~a-~~~gv~~~~------~g~-~~p~tfiID~~G~I~~~~~~~~~~~~~~ 145 (187)
T TIGR03137 76 HFVHKAWHDTSEAIGKITYPML--GDPTGVLT-RNFGVLIEE------AGL-ADRGTFVIDPEGVIQAVEITDNGIGRDA 145 (187)
T ss_pred HHHHHHHHhhhhhccCcceeEE--ECCccHHH-HHhCCcccC------CCc-eeeEEEEECCCCEEEEEEEeCCCCCCCH
Confidence 56666665432 25789988 55554432 333221110 011 3599999999999999875433 33
Q ss_pred hHHHHHHH
Q 028736 191 LKIEKDIQ 198 (204)
Q Consensus 191 ~~~~~~l~ 198 (204)
+++.+.|+
T Consensus 146 ~~ll~~l~ 153 (187)
T TIGR03137 146 SELLRKIK 153 (187)
T ss_pred HHHHHHHH
Confidence 44444443
No 26
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.91 E-value=6.4e-24 Score=153.08 Aligned_cols=128 Identities=20% Similarity=0.292 Sum_probs=102.6
Q ss_pred CCCcccceEEecCCCCeeecCCCCC-cEEEEEEe-ccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRG-KVLLVVNV-ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNE 119 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~g-k~~lv~f~-~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~ 119 (204)
.|+.+|+|++.+.+|+.+++++++| |+++|.|| ++|||.|+.+++.|+++++++++.++++|+|+.| +++
T Consensus 3 ~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d--------~~~ 74 (149)
T cd03018 3 VGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD--------SPF 74 (149)
T ss_pred CCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC--------CHH
Confidence 6899999999999999999999999 99999888 8999999999999999999999889999999965 577
Q ss_pred HHHHHHHhhcCccccceeeccCC--CCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCC
Q 028736 120 EIQEVACTMFKAEFPIFDKIDVN--GKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT 188 (204)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~ 188 (204)
.+++|+++ ++.+|+++ .|.. +... ..|+..... .+ ...|++||||++|+|++.+.|..
T Consensus 75 ~~~~~~~~-~~~~~~~~--~D~~~~~~~~-~~~g~~~~~------~~-~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 75 SLRAWAEE-NGLTFPLL--SDFWPHGEVA-KAYGVFDED------LG-VAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred HHHHHHHh-cCCCceEe--cCCCchhHHH-HHhCCcccc------CC-CccceEEEECCCCEEEEEEecCC
Confidence 89999955 58999998 4543 3222 222211100 01 12368999999999999988865
No 27
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.91 E-value=1.8e-23 Score=149.75 Aligned_cols=136 Identities=17% Similarity=0.175 Sum_probs=102.5
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEeccC-CCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASK-CGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEE 120 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~-C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~ 120 (204)
.|+++|+|++.+.+|+.+++++++||++||+||++| ||+|+.+++.|++++++++ ++.+|+|++| +.+.
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d--------~~~~ 71 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISAD--------LPFA 71 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECC--------CHHH
Confidence 688999999999999999999999999999999998 6899999999999999984 6999999975 5777
Q ss_pred HHHHHHhhcCc-cccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCC--ChhHHHHHH
Q 028736 121 IQEVACTMFKA-EFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT--SPLKIEKDI 197 (204)
Q Consensus 121 ~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~--~~~~~~~~l 197 (204)
.++|.++ ++. .|+++ .|.........|+..... .++ ..|++||||++|+|++.+.|.. +..++.+.|
T Consensus 72 ~~~~~~~-~~~~~~~~l--~D~~~~~~~~~~gv~~~~------~~~-~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 72 QKRWCGA-EGVDNVTTL--SDFRDHSFGKAYGVLIKD------LGL-LARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred HHHHHHh-cCCCCceEe--ecCcccHHHHHhCCeecc------CCc-cceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 8889855 464 78888 444312223333322110 011 2589999999999999987643 233454443
No 28
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.90 E-value=8.4e-24 Score=151.22 Aligned_cols=135 Identities=19% Similarity=0.236 Sum_probs=102.5
Q ss_pred cccceEEecCCCCeeecCCCCCcEEEEEEeccCCCC-CHHhHHHHHHHHHHhcCCC---eEEEEEeCCCCCCCCCCCHHH
Q 028736 45 SIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGL-TQSNYKELNVLYEKYKNQD---FEVLAFPCNQFAGQEPGSNEE 120 (204)
Q Consensus 45 ~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~-C~~~~~~l~~l~~~~~~~~---~~~i~v~~d~~~~~~~~~~~~ 120 (204)
.+|+|++.+.+|+.+++++++||++||+||++||+. |+.+++.++++++++++++ +++++|+.|+ +.++++.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~----~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP----ERDTPEV 76 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC----CCCCHHH
Confidence 379999999999999999999999999999999998 9999999999999998864 9999999985 2367889
Q ss_pred HHHHHHhhcCccccceeeccCCC--CCchhHHHHHHhhc-CCccccccccceeeEEECCCCcEEEecCC
Q 028736 121 IQEVACTMFKAEFPIFDKIDVNG--KNAAPIYKFLKSEK-GGFLGDAIKWNFTKFLVNKEGKVVERYAP 186 (204)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~-~~~~~~~i~~~P~~~lid~~G~i~~~~~g 186 (204)
+++|+++ ++.+|+++. |... ....+.|+...... ....++++.|.|.+||||++|+|++.+.+
T Consensus 77 ~~~~~~~-~~~~~~~l~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~ 142 (142)
T cd02968 77 LKAYAKA-FGPGWIGLT--GTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred HHHHHHH-hCCCcEEEE--CCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence 9999965 488999884 3221 11122222111100 00011245677899999999999998754
No 29
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.90 E-value=1.3e-22 Score=153.13 Aligned_cols=152 Identities=20% Similarity=0.295 Sum_probs=118.4
Q ss_pred ceEEecCCCCeeecCCCCCcEEEEEEeccCCCC-CHHhHHHHHHHHHHhc-C--CCeEEEEEeCCCCCCCCCCCHHHHHH
Q 028736 48 DFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGL-TQSNYKELNVLYEKYK-N--QDFEVLAFPCNQFAGQEPGSNEEIQE 123 (204)
Q Consensus 48 ~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~-C~~~~~~l~~l~~~~~-~--~~~~~i~v~~d~~~~~~~~~~~~~~~ 123 (204)
+|+++|++|+.+++.+++||+++|+|.+|+||. |+.++..|.+++++.. + .+++++.|++|+ ++|+++.+++
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDP----erDtp~~lk~ 124 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDP----ERDTPEVLKK 124 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECC----CCCCHHHHHH
Confidence 899999999999999999999999999999999 9999999999999998 3 369999999998 6899999999
Q ss_pred HHHhhcCccccceeeccCCCCCchhHHHHHH--hhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhh
Q 028736 124 VACTMFKAEFPIFDKIDVNGKNAAPIYKFLK--SEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 124 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 201 (204)
|+..+....|..+.+.-...+...+.|.... .+...-..+.+.|...+|+||++|+++..+.+..+++.+.+.|+.++
T Consensus 125 Y~~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~ 204 (207)
T COG1999 125 YAELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLL 204 (207)
T ss_pred HhcccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHh
Confidence 9951334445444321111222223333221 11110013689999999999999999999988778999999999998
Q ss_pred hc
Q 028736 202 GS 203 (204)
Q Consensus 202 ~~ 203 (204)
++
T Consensus 205 ~~ 206 (207)
T COG1999 205 KE 206 (207)
T ss_pred hc
Confidence 75
No 30
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.90 E-value=3e-23 Score=156.52 Aligned_cols=141 Identities=19% Similarity=0.262 Sum_probs=105.9
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEE-EEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLV-VNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEE 120 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~gk~~lv-~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~ 120 (204)
.|+.+|+|++.+..| .+++++++||+++| +||++|||.|+.+++.|.+++++++++++++|+||+| +.+.
T Consensus 4 vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D--------~~~~ 74 (202)
T PRK13190 4 LGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD--------SIYS 74 (202)
T ss_pred CCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHHH
Confidence 789999999999888 79999999998776 6899999999999999999999999989999999987 3455
Q ss_pred HHHHHH---hhcC--ccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEec----CCCCChh
Q 028736 121 IQEVAC---TMFK--AEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERY----APTTSPL 191 (204)
Q Consensus 121 ~~~~~~---~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~----~g~~~~~ 191 (204)
.++|++ +++| .+||++ .|.++.... .|+...... + ..+|++||||++|+|++.. ....+.+
T Consensus 75 ~~~w~~~~~~~~g~~~~fPll--~D~~~~ia~-~ygv~~~~~------g-~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ 144 (202)
T PRK13190 75 HIAWLRDIEERFGIKIPFPVI--ADIDKELAR-EYNLIDENS------G-ATVRGVFIIDPNQIVRWMIYYPAETGRNID 144 (202)
T ss_pred HHHHHHhHHHhcCCCceEEEE--ECCChHHHH-HcCCccccC------C-cEEeEEEEECCCCEEEEEEEeCCCCCCCHH
Confidence 445543 3445 479999 566655433 333221100 1 1369999999999999875 2233666
Q ss_pred HHHHHHHHhh
Q 028736 192 KIEKDIQNLL 201 (204)
Q Consensus 192 ~~~~~l~~ll 201 (204)
++.+.|+.+.
T Consensus 145 ellr~l~~l~ 154 (202)
T PRK13190 145 EIIRITKALQ 154 (202)
T ss_pred HHHHHHHHhh
Confidence 7777777664
No 31
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.90 E-value=3.2e-23 Score=157.39 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=107.0
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEE-EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRGKVL-LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEE 120 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~gk~~-lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~ 120 (204)
.|+.+|+|++.+.+|+...+++++||++ |++||++|||.|..+++.+++++++|.+.++.+|+||+|+ ..+...
T Consensus 4 ~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~-----~~~~~~ 78 (215)
T PRK13599 4 LGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQ-----VFSHIK 78 (215)
T ss_pred CCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC-----HHHHHH
Confidence 7899999999999999888889999986 5799999999999999999999999999999999999873 122334
Q ss_pred HHHHHHh--hcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCC----ChhHHH
Q 028736 121 IQEVACT--MFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT----SPLKIE 194 (204)
Q Consensus 121 ~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~----~~~~~~ 194 (204)
+.+++++ ..+.+||++ .|.++.. ...|+...... +....|++||||++|+|++.+..+. +.+++.
T Consensus 79 w~~~i~~~~~~~i~fPil--~D~~~~v-a~~yg~~~~~~------~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eil 149 (215)
T PRK13599 79 WVEWIKDNTNIAIPFPVI--ADDLGKV-SNQLGMIHPGK------GTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEIL 149 (215)
T ss_pred HHHhHHHhcCCCCceeEE--ECCCchH-HHHcCCCccCC------CCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHH
Confidence 4455543 236789999 5665544 33443322110 1224699999999999999864322 345566
Q ss_pred HHHHHh
Q 028736 195 KDIQNL 200 (204)
Q Consensus 195 ~~l~~l 200 (204)
+.|++|
T Consensus 150 r~l~~l 155 (215)
T PRK13599 150 RALKAL 155 (215)
T ss_pred HHHHHh
Confidence 666554
No 32
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.89 E-value=1.1e-22 Score=149.62 Aligned_cols=130 Identities=18% Similarity=0.190 Sum_probs=94.9
Q ss_pred CCCcccceEEecC-----CC-----CeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEE------EEE
Q 028736 42 APKSIYDFTVKDI-----RG-----NDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEV------LAF 105 (204)
Q Consensus 42 ~~~~~p~~~l~~~-----~g-----~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~------i~v 105 (204)
.|.++|.+++.+- +| +..+.++++||+++|+|||+||++|+.+.|.|.++.+ +++.+ ++|
T Consensus 25 ~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~----~~~~~~~y~~t~~I 100 (184)
T TIGR01626 25 VEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA----AKFPPVKYQTTTII 100 (184)
T ss_pred cCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH----cCCCcccccceEEE
Confidence 6777887776664 33 5556677899999999999999999999999999943 36777 899
Q ss_pred eCCCCCCCCCCCHHHHHHHHHhhcCcccc---ceeeccCCCCCchhHHHHHHhhcCCccccccccceee-EEECCCCcEE
Q 028736 106 PCNQFAGQEPGSNEEIQEVACTMFKAEFP---IFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTK-FLVNKEGKVV 181 (204)
Q Consensus 106 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~-~lid~~G~i~ 181 (204)
|.|. ...+...-++.|++ +.+..|| ++ .|.++..... +++..+|.+ |+||++|+|+
T Consensus 101 N~dd---~~~~~~~fVk~fie-~~~~~~P~~~vl--lD~~g~v~~~--------------~gv~~~P~T~fVIDk~GkVv 160 (184)
T TIGR01626 101 NADD---AIVGTGMFVKSSAK-KGKKENPWSQVV--LDDKGAVKNA--------------WQLNSEDSAIIVLDKTGKVK 160 (184)
T ss_pred ECcc---chhhHHHHHHHHHH-HhcccCCcceEE--ECCcchHHHh--------------cCCCCCCceEEEECCCCcEE
Confidence 8763 00012233555563 3477787 66 5555543221 377888888 8999999999
Q ss_pred EecCCCCChhHHHH
Q 028736 182 ERYAPTTSPLKIEK 195 (204)
Q Consensus 182 ~~~~g~~~~~~~~~ 195 (204)
+++.|..+.+++.+
T Consensus 161 ~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 161 FVKEGALSDSDIQT 174 (184)
T ss_pred EEEeCCCCHHHHHH
Confidence 99999988877655
No 33
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.89 E-value=1.9e-22 Score=138.90 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=90.1
Q ss_pred cceEEecCCCCeeecCCCC-CcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHH
Q 028736 47 YDFTVKDIRGNDVSLSGYR-GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVA 125 (204)
Q Consensus 47 p~~~l~~~~g~~~~l~~~~-gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~ 125 (204)
|+|++.+.+|+.+++++++ ||++||+||++||++|+.+++.++++++++.. ++.++.++ + ++.++.++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~-~-------~~~~~~~~~~ 71 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLAS-D-------GEKAEHQRFL 71 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEe-C-------CCHHHHHHHH
Confidence 7899999999999999997 99999999999999999999999999988865 58888775 3 4678899999
Q ss_pred HhhcCc-cccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEec
Q 028736 126 CTMFKA-EFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERY 184 (204)
Q Consensus 126 ~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 184 (204)
++ ++. .||.+. + .. ..+. +++..+|++|+||++|+|+++.
T Consensus 72 ~~-~~~~~~p~~~--~--~~-~~~~-------------~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 72 KK-HGLEAFPYVL--S--AE-LGMA-------------YQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred HH-hCCCCCcEEe--c--HH-HHhh-------------cCCCCcCeEEEECCCCeEEecc
Confidence 65 476 488773 1 11 1221 3677789999999999999864
No 34
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.89 E-value=3.7e-23 Score=147.12 Aligned_cols=107 Identities=11% Similarity=0.090 Sum_probs=81.5
Q ss_pred CeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCC-------CeEEEEEeCCCCCCCCCCCHHHHHHHHHhhc
Q 028736 57 NDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ-------DFEVLAFPCNQFAGQEPGSNEEIQEVACTMF 129 (204)
Q Consensus 57 ~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~-------~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~ 129 (204)
..+++++++||+++|+|||||||+|+.++|.|.++++++.++ ++++|+|+.|. +.+++++|+++ +
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~-------~~~~~~~f~~~-~ 87 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ-------SEQQQESFLKD-M 87 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC-------CHHHHHHHHHH-C
Confidence 356778999999999999999999999999999999887643 69999999873 67789999955 5
Q ss_pred CccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEec
Q 028736 130 KAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERY 184 (204)
Q Consensus 130 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 184 (204)
+.+|+.+...+..+ ..+... +++..+|++||||++|+|+.+.
T Consensus 88 ~~~~~~~p~~~~~~---~~l~~~----------y~v~~iPt~vlId~~G~Vv~~~ 129 (146)
T cd03008 88 PKKWLFLPFEDEFR---RELEAQ----------FSVEELPTVVVLKPDGDVLAAN 129 (146)
T ss_pred CCCceeecccchHH---HHHHHH----------cCCCCCCEEEEECCCCcEEeeC
Confidence 77764431111111 111111 3778889999999999999874
No 35
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.89 E-value=1.4e-22 Score=141.47 Aligned_cols=121 Identities=20% Similarity=0.241 Sum_probs=102.7
Q ss_pred cceEEecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 028736 47 YDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVAC 126 (204)
Q Consensus 47 p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~ 126 (204)
|+|++++.+|+.+++++.+||+++|+||++||+.|+.+++.+++++++ +.+++|+.++ ++++++++|++
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~------~~~~~~~~~~~ 69 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALRS------GDDGAVARFMQ 69 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEccC------CCHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999876 6778888763 57899999995
Q ss_pred hhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHH
Q 028736 127 TMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKD 196 (204)
Q Consensus 127 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~ 196 (204)
+ ++.+|+++ .|.++..... .++.++|++++||++| +++.+.|..+++.+.+.
T Consensus 70 ~-~~~~~~~~--~d~~~~~~~~--------------~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 70 K-KGYGFPVI--NDPDGVISAR--------------WGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred H-cCCCccEE--ECCCcHHHHh--------------CCCCcccEEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence 5 58899988 4554433222 3788889999999999 99999999998888764
No 36
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.89 E-value=1.7e-22 Score=144.00 Aligned_cols=131 Identities=21% Similarity=0.267 Sum_probs=102.1
Q ss_pred cccceEEecCCCCeeecCCCCCcEEEEEEe-ccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHH
Q 028736 45 SIYDFTVKDIRGNDVSLSGYRGKVLLVVNV-ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQE 123 (204)
Q Consensus 45 ~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~-~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~ 123 (204)
.+|+|++.|.+|+.+++++++||+++|+|| ++||+.|..+++.|+++++++++.++.+|+|+.| +++.+++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d--------~~~~~~~ 72 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD--------SPFSHKA 72 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHHHHHH
Confidence 379999999999999999999999999999 6899999999999999999998778999999975 5778899
Q ss_pred HHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCCh
Q 028736 124 VACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSP 190 (204)
Q Consensus 124 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~ 190 (204)
|+++..+.+|+++ .|..+.. ...|+....... + +....|++||||++|+|++.+.+....
T Consensus 73 ~~~~~~~~~~~~l--~D~~~~~-~~~~g~~~~~~~---~-~~~~~p~~~lid~~g~i~~~~~~~~~~ 132 (140)
T cd02971 73 WAEKEGGLNFPLL--SDPDGEF-AKAYGVLIEKSA---G-GGLAARATFIIDPDGKIRYVEVEPLPT 132 (140)
T ss_pred HHhcccCCCceEE--ECCChHH-HHHcCCcccccc---c-cCceeEEEEEECCCCcEEEEEecCCCC
Confidence 9954328889988 5555432 222222111100 0 112358999999999999999887653
No 37
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.89 E-value=5.7e-23 Score=151.55 Aligned_cols=140 Identities=19% Similarity=0.267 Sum_probs=103.3
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEeccCCCC-CHHhHHHHHHHHHHhcCC--CeEEEEEeCCCCCCCCCCCH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGL-TQSNYKELNVLYEKYKNQ--DFEVLAFPCNQFAGQEPGSN 118 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~-C~~~~~~l~~l~~~~~~~--~~~~i~v~~d~~~~~~~~~~ 118 (204)
.....|+|++.|++|+.+++++++||++||+|++|.||. |+.++..|.++++++.+. .+++++||+|+ ++|++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP----~~DTp 103 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP----ERDTP 103 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST----TTC-H
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC----CCCCH
Confidence 445678999999999999999999999999999999999 999999999999998864 69999999997 57899
Q ss_pred HHHHHHHHhhcCccccceeeccCCCCCchhHHHHHH-hh-c-CCccccccccceeeEEECCCCcEEEecCC
Q 028736 119 EEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLK-SE-K-GGFLGDAIKWNFTKFLVNKEGKVVERYAP 186 (204)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~-~-~~~~~~~i~~~P~~~lid~~G~i~~~~~g 186 (204)
+.+++|++ .++.++..+.......+...+.++..- .. . .....+.+.|...+|||||+|+++..|.+
T Consensus 104 ~~L~~Y~~-~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 104 EVLKKYAK-KFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HHHHHHHH-CHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred HHHHHHHH-hcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 99999995 468887766321111111111122111 00 0 11122478899999999999999998854
No 38
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.89 E-value=2.2e-22 Score=149.58 Aligned_cols=141 Identities=11% Similarity=0.154 Sum_probs=106.9
Q ss_pred CCCcccceEEecC---CCCeeecCCCCCcEEEEEEe-ccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCC
Q 028736 42 APKSIYDFTVKDI---RGNDVSLSGYRGKVLLVVNV-ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGS 117 (204)
Q Consensus 42 ~~~~~p~~~l~~~---~g~~~~l~~~~gk~~lv~f~-~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~ 117 (204)
+|.++|+|+.... +...+++++++||++||+|| ++|||.|+.+++.++++++++.+.++++++||.| +
T Consensus 4 ~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D--------~ 75 (187)
T PRK10382 4 INTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTD--------T 75 (187)
T ss_pred cCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCC--------C
Confidence 7899999997773 34667788999999999999 8999999999999999999999999999999975 6
Q ss_pred HHHHHHHHHhh---cCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCC----CCh
Q 028736 118 NEEIQEVACTM---FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPT----TSP 190 (204)
Q Consensus 118 ~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~----~~~ 190 (204)
....++|.+.. .+.+||++ .|.+... .+.|+.+... .++ ..|++||||++|+|++.+... .+.
T Consensus 76 ~~~~~a~~~~~~~~~~l~fpll--sD~~~~i-a~~ygv~~~~------~g~-~~r~tfIID~~G~I~~~~~~~~~~~~~~ 145 (187)
T PRK10382 76 HFTHKAWHSSSETIAKIKYAMI--GDPTGAL-TRNFDNMRED------EGL-ADRATFVVDPQGIIQAIEVTAEGIGRDA 145 (187)
T ss_pred HHHHHHHHHhhccccCCceeEE--EcCchHH-HHHcCCCccc------CCc-eeeEEEEECCCCEEEEEEEeCCCCCCCH
Confidence 88888888543 37789999 5655443 3333332110 011 239999999999999986433 255
Q ss_pred hHHHHHHHHh
Q 028736 191 LKIEKDIQNL 200 (204)
Q Consensus 191 ~~~~~~l~~l 200 (204)
+++.+.|+++
T Consensus 146 ~eil~~l~al 155 (187)
T PRK10382 146 SDLLRKIKAA 155 (187)
T ss_pred HHHHHHHHhh
Confidence 6666666655
No 39
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.89 E-value=1.5e-22 Score=183.84 Aligned_cols=142 Identities=17% Similarity=0.212 Sum_probs=118.4
Q ss_pred CCCcccceEEec--CCCCeeec-CCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCH
Q 028736 42 APKSIYDFTVKD--IRGNDVSL-SGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSN 118 (204)
Q Consensus 42 ~~~~~p~~~l~~--~~g~~~~l-~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~ 118 (204)
.+..+|+|+..+ .+|+++++ ++++||++||+|||+||++|+.++|.|++++++|+++++.+|+|+.+.+.. .++.
T Consensus 393 ~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~--~~~~ 470 (1057)
T PLN02919 393 TATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDN--EKDL 470 (1057)
T ss_pred cCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccc--cccH
Confidence 688999999876 68999998 589999999999999999999999999999999998889999998653222 2357
Q ss_pred HHHHHHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHH
Q 028736 119 EEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQ 198 (204)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~ 198 (204)
+++++++. +++..||++ .|..+..... +++..+|+++|||++|++++++.|....+++.+.|+
T Consensus 471 ~~~~~~~~-~~~i~~pvv--~D~~~~~~~~--------------~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~ 533 (1057)
T PLN02919 471 EAIRNAVL-RYNISHPVV--NDGDMYLWRE--------------LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVE 533 (1057)
T ss_pred HHHHHHHH-HhCCCccEE--ECCchHHHHh--------------cCCCccceEEEECCCCeEEEEEecccCHHHHHHHHH
Confidence 88999995 569999988 4544432221 378888999999999999999999888888998888
Q ss_pred Hhhh
Q 028736 199 NLLG 202 (204)
Q Consensus 199 ~ll~ 202 (204)
+++.
T Consensus 534 ~~l~ 537 (1057)
T PLN02919 534 AALQ 537 (1057)
T ss_pred HHHH
Confidence 8763
No 40
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.88 E-value=2.4e-22 Score=151.92 Aligned_cols=142 Identities=14% Similarity=0.205 Sum_probs=102.8
Q ss_pred CCCcccceEEecCCCCeeecCCCCC-cEE-EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRG-KVL-LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNE 119 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~g-k~~-lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~ 119 (204)
.|+.+|+|++.+.+| .+++++++| |++ |++||++|||.|..+++.|+++++++++.++++++||+| +..
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D--------~~~ 71 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD--------SVE 71 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CHH
Confidence 378899999999888 589999988 765 458999999999999999999999999999999999987 355
Q ss_pred HHHHHHHh---h--cCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCC----h
Q 028736 120 EIQEVACT---M--FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTS----P 190 (204)
Q Consensus 120 ~~~~~~~~---~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~----~ 190 (204)
..++|+++ . .+.+||++ .|.++... ..|+...... + .-...|++||||++|+|++.+.++.+ .
T Consensus 72 ~~~~~~~~i~~~~~~~~~fpil--~D~~~~ia-~~yg~~~~~~----~-~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~ 143 (203)
T cd03016 72 SHIKWIEDIEEYTGVEIPFPII--ADPDREVA-KLLGMIDPDA----G-STLTVRAVFIIDPDKKIRLILYYPATTGRNF 143 (203)
T ss_pred HHHHHHhhHHHhcCCCCceeEE--ECchHHHH-HHcCCccccC----C-CCceeeEEEEECCCCeEEEEEecCCCCCCCH
Confidence 55555532 1 47899999 56554433 2232221100 0 01124789999999999998765443 3
Q ss_pred hHHHHHHHHh
Q 028736 191 LKIEKDIQNL 200 (204)
Q Consensus 191 ~~~~~~l~~l 200 (204)
+++.+.|+++
T Consensus 144 ~ell~~l~~l 153 (203)
T cd03016 144 DEILRVVDAL 153 (203)
T ss_pred HHHHHHHHHH
Confidence 4566666554
No 41
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.88 E-value=1.7e-22 Score=153.48 Aligned_cols=145 Identities=17% Similarity=0.202 Sum_probs=103.3
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEE-EEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLV-VNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEE 120 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~gk~~lv-~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~ 120 (204)
.|+.+|+|++.+.+|+....++++||+++| +||++|||.|+.+++.|+++++++++.++++++||+|+ ..+...
T Consensus 9 iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds-----~~~h~a 83 (215)
T PRK13191 9 IGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDS-----NISHIE 83 (215)
T ss_pred CCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCC-----HHHHHH
Confidence 799999999999999644335579998776 88999999999999999999999999999999999874 122223
Q ss_pred HHHHHHhh--cCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCC----ChhHHH
Q 028736 121 IQEVACTM--FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT----SPLKIE 194 (204)
Q Consensus 121 ~~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~----~~~~~~ 194 (204)
+.+++.+. .+.+||++ .|.++.... .|+.+.... .....|++||||++|+|++.+.++. +.+++.
T Consensus 84 w~~~~~~~~~~~i~fPll--sD~~~~ia~-~ygv~~~~~------~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eil 154 (215)
T PRK13191 84 WVMWIEKNLKVEVPFPII--ADPMGNVAK-RLGMIHAES------STATVRAVFIVDDKGTVRLILYYPMEIGRNIDEIL 154 (215)
T ss_pred HHhhHHHhcCCCCceEEE--ECCchHHHH-HcCCccccc------CCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHH
Confidence 44445432 35789999 566655433 333321110 1124699999999999999864443 445566
Q ss_pred HHHHHh
Q 028736 195 KDIQNL 200 (204)
Q Consensus 195 ~~l~~l 200 (204)
+.|+.+
T Consensus 155 r~l~al 160 (215)
T PRK13191 155 RAIRAL 160 (215)
T ss_pred HHHHHh
Confidence 666554
No 42
>PRK15000 peroxidase; Provisional
Probab=99.88 E-value=4.1e-22 Score=149.94 Aligned_cols=141 Identities=14% Similarity=0.176 Sum_probs=101.5
Q ss_pred CCCcccceEEecCC--CCe---eecCCC-CCcEEEEEEecc-CCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 028736 42 APKSIYDFTVKDIR--GND---VSLSGY-RGKVLLVVNVAS-KCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQE 114 (204)
Q Consensus 42 ~~~~~p~~~l~~~~--g~~---~~l~~~-~gk~~lv~f~~t-~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~ 114 (204)
+|+.+|+|++.+.. |+. ++++++ +||++||+||+. |||.|+.+++.|++++++++++++++|+||+|
T Consensus 4 vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D------ 77 (200)
T PRK15000 4 VTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD------ 77 (200)
T ss_pred CCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC------
Confidence 78999999999863 454 455555 799999999994 99999999999999999999999999999986
Q ss_pred CCCHHHHHHHHH---hhcC---ccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCC
Q 028736 115 PGSNEEIQEVAC---TMFK---AEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT 188 (204)
Q Consensus 115 ~~~~~~~~~~~~---~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~ 188 (204)
+....+.|.+ ++.| .+||++ .|.++.... .|+..... .++ ..|++||||++|+|++.+.+..
T Consensus 78 --~~~~~~~w~~~~~~~~g~~~i~fpll--sD~~~~ia~-~ygv~~~~------~g~-~~r~tfiID~~G~I~~~~~~~~ 145 (200)
T PRK15000 78 --SEFVHNAWRNTPVDKGGIGPVKYAMV--ADVKREIQK-AYGIEHPD------EGV-ALRGSFLIDANGIVRHQVVNDL 145 (200)
T ss_pred --CHHHHHHHHhhHHHhCCccccCceEE--ECCCcHHHH-HcCCccCC------CCc-EEeEEEEECCCCEEEEEEecCC
Confidence 4555555542 2334 489999 566654333 33322110 011 4699999999999999877655
Q ss_pred Ch----hHHHHHHHHh
Q 028736 189 SP----LKIEKDIQNL 200 (204)
Q Consensus 189 ~~----~~~~~~l~~l 200 (204)
.. +++.+.|+.+
T Consensus 146 ~~gr~~~eilr~l~al 161 (200)
T PRK15000 146 PLGRNIDEMLRMVDAL 161 (200)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 43 4455555443
No 43
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.88 E-value=9.2e-22 Score=143.87 Aligned_cols=118 Identities=17% Similarity=0.227 Sum_probs=92.2
Q ss_pred CCcccceEEecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHH
Q 028736 43 PKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQ 122 (204)
Q Consensus 43 ~~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~ 122 (204)
....|+|++. +|+.+++++++ ||+||++|||+|+.++|.|+++++++ ++.+++|++|. +.
T Consensus 52 ~~~~~~f~l~--dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~-------~~---- 111 (181)
T PRK13728 52 KPAPRWFRLS--NGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDG-------QG---- 111 (181)
T ss_pred CCCCCccCCC--CCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCC-------CC----
Confidence 3456678874 99999999997 77899999999999999999999998 49999999873 11
Q ss_pred HHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccc--cccceeeEEECCCCcEEE-ecCCCCChhHHHHHHHH
Q 028736 123 EVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDA--IKWNFTKFLVNKEGKVVE-RYAPTTSPLKIEKDIQN 199 (204)
Q Consensus 123 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--i~~~P~~~lid~~G~i~~-~~~g~~~~~~~~~~l~~ 199 (204)
...||++. |..+......| + +.++|++||||++|++++ .+.|..+.+++.+.+++
T Consensus 112 -------~~~fPv~~--dd~~~~~~~~~-------------g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ 169 (181)
T PRK13728 112 -------DTAFPEAL--PAPPDVMQTFF-------------PNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDT 169 (181)
T ss_pred -------CCCCceEe--cCchhHHHHHh-------------CCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHH
Confidence 25788883 22221111111 3 257899999999999974 79999999999999998
Q ss_pred hhh
Q 028736 200 LLG 202 (204)
Q Consensus 200 ll~ 202 (204)
+++
T Consensus 170 ll~ 172 (181)
T PRK13728 170 VLQ 172 (181)
T ss_pred HHh
Confidence 875
No 44
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.87 E-value=5.3e-22 Score=142.85 Aligned_cols=130 Identities=18% Similarity=0.191 Sum_probs=95.6
Q ss_pred cccceEEecCCCCeeecCCCC-CcEE-EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHH
Q 028736 45 SIYDFTVKDIRGNDVSLSGYR-GKVL-LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQ 122 (204)
Q Consensus 45 ~~p~~~l~~~~g~~~~l~~~~-gk~~-lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~ 122 (204)
.+|+|++.+.+|+.++++++. ++++ |++||++|||.|+.+++.|+++++++.+.++.+|+|+.| +.+..+
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~--------~~~~~~ 72 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE--------SPEKLE 72 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC--------CHHHHH
Confidence 379999999999999999875 4555 555579999999999999999999999889999999975 456666
Q ss_pred HHHHhhcCccccceeeccCCCCCchhHHHHHHhhc----------------CCccccccccceeeEEECCCCcEEEecCC
Q 028736 123 EVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEK----------------GGFLGDAIKWNFTKFLVNKEGKVVERYAP 186 (204)
Q Consensus 123 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----------------~~~~~~~i~~~P~~~lid~~G~i~~~~~g 186 (204)
+|.+ +.+.+||++ .|.+..... .|+...... ..........+|.+||||++|+|++.+.+
T Consensus 73 ~~~~-~~~~~~p~~--~D~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 73 AFDK-GKFLPFPVY--ADPDRKLYR-ALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHHH-hcCCCCeEE--ECCchhHHH-HcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 7885 458999999 566544322 222210000 00111123457999999999999998865
No 45
>PRK13189 peroxiredoxin; Provisional
Probab=99.87 E-value=1.4e-21 Score=149.33 Aligned_cols=142 Identities=16% Similarity=0.249 Sum_probs=103.0
Q ss_pred CCCcccceEEecCCCCeeecCC-CCCcEEEE-EEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSG-YRGKVLLV-VNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNE 119 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~-~~gk~~lv-~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~ 119 (204)
+|+.+|+|++.+.+|. +.+++ ++||+++| +||++|||.|+.+++.|+++++++++.++++|+||+| +..
T Consensus 11 vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D--------~~~ 81 (222)
T PRK13189 11 IGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID--------QVF 81 (222)
T ss_pred CCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CHH
Confidence 7999999999999985 67776 49996655 7889999999999999999999999989999999987 455
Q ss_pred HHHHHHHh---h--cCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCC----Ch
Q 028736 120 EIQEVACT---M--FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT----SP 190 (204)
Q Consensus 120 ~~~~~~~~---~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~----~~ 190 (204)
..++|++. . .+.+||++ .|.++... +.|+...... .-...|++||||++|+|++...++. +.
T Consensus 82 ~h~aw~~~~~~~~g~~i~fPll--sD~~~~ia-~~ygv~~~~~------~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~ 152 (222)
T PRK13189 82 SHIKWVEWIKEKLGVEIEFPII--ADDRGEIA-KKLGMISPGK------GTNTVRAVFIIDPKGIIRAILYYPQEVGRNM 152 (222)
T ss_pred HHHHHHHhHHHhcCcCcceeEE--EcCccHHH-HHhCCCcccc------CCCceeEEEEECCCCeEEEEEecCCCCCCCH
Confidence 55566542 2 24689988 56655433 3333221100 0114699999999999998865433 34
Q ss_pred hHHHHHHHHhh
Q 028736 191 LKIEKDIQNLL 201 (204)
Q Consensus 191 ~~~~~~l~~ll 201 (204)
+++.+.|+.+.
T Consensus 153 ~eilr~l~alq 163 (222)
T PRK13189 153 DEILRLVKALQ 163 (222)
T ss_pred HHHHHHHHHhh
Confidence 55666665543
No 46
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.87 E-value=1.3e-21 Score=151.50 Aligned_cols=141 Identities=15% Similarity=0.142 Sum_probs=103.9
Q ss_pred cCCCcccceEEec-CCC--CeeecCCC-CCcEEEEEEe-ccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCC
Q 028736 41 EAPKSIYDFTVKD-IRG--NDVSLSGY-RGKVLLVVNV-ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEP 115 (204)
Q Consensus 41 ~~~~~~p~~~l~~-~~g--~~~~l~~~-~gk~~lv~f~-~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~ 115 (204)
.+|+.+|+|++.+ .+| +.++++++ +||++|++|| ++|||.|+.|++.++++++++++.++++++||+|
T Consensus 69 ~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~D------- 141 (261)
T PTZ00137 69 LVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVD------- 141 (261)
T ss_pred cCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-------
Confidence 3899999999987 456 46899997 8888888877 7999999999999999999999999999999986
Q ss_pred CCHHHHHHHHHh------hcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCC-
Q 028736 116 GSNEEIQEVACT------MFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT- 188 (204)
Q Consensus 116 ~~~~~~~~~~~~------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~- 188 (204)
++...++|.+. ..+.+||++ .|.++.. .+.|+.+.. .+ ...|++||||++|+|++.+..+.
T Consensus 142 -s~~~h~aw~~~~~~~~g~~~l~fPlL--sD~~~~i-akayGv~~~-------~g-~a~R~tFIID~dG~I~~~~~~~~~ 209 (261)
T PTZ00137 142 -SPFSHKAWKELDVRQGGVSPLKFPLF--SDISREV-SKSFGLLRD-------EG-FSHRASVLVDKAGVVKHVAVYDLG 209 (261)
T ss_pred -CHHHHHHHHhhhhhhccccCcceEEE--EcCChHH-HHHcCCCCc-------CC-ceecEEEEECCCCEEEEEEEeCCC
Confidence 45556666532 136789999 5555433 233332110 01 14699999999999999864333
Q ss_pred ---ChhHHHHHHHHh
Q 028736 189 ---SPLKIEKDIQNL 200 (204)
Q Consensus 189 ---~~~~~~~~l~~l 200 (204)
+.+++.+.|+.+
T Consensus 210 ~gr~v~eiLr~l~al 224 (261)
T PTZ00137 210 LGRSVDETLRLFDAV 224 (261)
T ss_pred CCCCHHHHHHHHHHh
Confidence 445666666554
No 47
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.86 E-value=3.6e-21 Score=131.79 Aligned_cols=116 Identities=28% Similarity=0.501 Sum_probs=97.6
Q ss_pred ceEEecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHh
Q 028736 48 DFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACT 127 (204)
Q Consensus 48 ~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~ 127 (204)
+|++.+.+|+.+++++++||+++|+||++||+.|+..++.|.++.+++++.++.+++|++|+ ++.+.+++++.+
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~------~~~~~~~~~~~~ 74 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD------DDPAAVKAFLKK 74 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC------CCHHHHHHHHHH
Confidence 47888999999999999999999999999999999999999999999987789999999884 258999999955
Q ss_pred hcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCC
Q 028736 128 MFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAP 186 (204)
Q Consensus 128 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g 186 (204)
++.+|+++ .|.... ..+. +++.++|+++|+|++|++++.+.|
T Consensus 75 -~~~~~~~~--~~~~~~-~~~~-------------~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 75 -YGITFPVL--LDPDGE-LAKA-------------YGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred -cCCCcceE--EcCcch-HHHh-------------cCcCccceEEEECCCCcEEEEecC
Confidence 58888888 444322 2222 267778999999999999998754
No 48
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.85 E-value=4.9e-21 Score=144.36 Aligned_cols=131 Identities=15% Similarity=0.149 Sum_probs=97.6
Q ss_pred CCCcccceEEec----CCCCeeecCCCCCcEEEEEEec-cCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCC
Q 028736 42 APKSIYDFTVKD----IRGNDVSLSGYRGKVLLVVNVA-SKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPG 116 (204)
Q Consensus 42 ~~~~~p~~~l~~----~~g~~~~l~~~~gk~~lv~f~~-t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~ 116 (204)
.|+++|+|++.+ .+|+.+++++++||+++|+||+ +||+.|+.++..|.++++++.+.++++|+||+|+
T Consensus 8 ~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~------- 80 (199)
T PTZ00253 8 INHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDS------- 80 (199)
T ss_pred cCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCC-------
Confidence 789999999765 4668999999999999999996 7899999999999999999999999999999873
Q ss_pred CHHHHHHHHHhh------cCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCCh
Q 028736 117 SNEEIQEVACTM------FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSP 190 (204)
Q Consensus 117 ~~~~~~~~~~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~ 190 (204)
.....+|.... .+.+||++ .|.++... +.|+.+... .++ .+|.+||||++|+|++.+.+....
T Consensus 81 -~~~~~~~~~~~~~~~~~~~~~fpll--~D~~~~ia-~~ygv~~~~------~g~-~~r~~fiID~~G~i~~~~~~~~~~ 149 (199)
T PTZ00253 81 -EYAHLQWTLQERKKGGLGTMAIPML--ADKTKSIA-RSYGVLEEE------QGV-AYRGLFIIDPKGMLRQITVNDMPV 149 (199)
T ss_pred -HHHHHHHHhChHhhCCccccccceE--ECcHhHHH-HHcCCcccC------CCc-eEEEEEEECCCCEEEEEEecCCCC
Confidence 44344443211 13689999 56554433 333332110 011 248999999999999987664433
No 49
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.85 E-value=2.2e-21 Score=137.20 Aligned_cols=107 Identities=22% Similarity=0.216 Sum_probs=82.0
Q ss_pred CeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCC--CeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCcccc
Q 028736 57 NDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ--DFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFP 134 (204)
Q Consensus 57 ~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~--~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (204)
+++++++++||++||+||++||++|+.+++.+++++++++++ ++++++|++|. +.+.+++|+++. + .+.
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~-------~~~~~~~~~~~~-~-~~~ 78 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDR-------SEESFNEYFSEM-P-PWL 78 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC-------CHHHHHHHHhcC-C-CeE
Confidence 599999999999999999999999999999999999999875 79999999874 678899999653 5 444
Q ss_pred ceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEec
Q 028736 135 IFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERY 184 (204)
Q Consensus 135 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 184 (204)
.+...|. .....+... +++..+|+++|||++|+|+.+.
T Consensus 79 ~~~~~d~--~~~~~~~~~----------~~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 79 AVPFEDE--ELRELLEKQ----------FKVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred eeccCcH--HHHHHHHHH----------cCCCCCCEEEEECCCCCEEchh
Confidence 3311110 000111111 3788889999999999999775
No 50
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.85 E-value=2.3e-21 Score=136.86 Aligned_cols=112 Identities=20% Similarity=0.255 Sum_probs=84.3
Q ss_pred EecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCC--CeEEEEEeCCCCCCCCCCCHHHHHHHHHhh
Q 028736 51 VKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ--DFEVLAFPCNQFAGQEPGSNEEIQEVACTM 128 (204)
Q Consensus 51 l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~--~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~ 128 (204)
+.+.+|+.+++++++||++||+||++||++|+.+++.++++++++.++ ++++++|++|. +.+.+++++++.
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~-------~~~~~~~~~~~~ 75 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDR-------DEESFNDYFSKM 75 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCC-------CHHHHHHHHHcC
Confidence 467899999999999999999999999999999999999999999764 69999999874 567888888542
Q ss_pred cCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEec
Q 028736 129 FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERY 184 (204)
Q Consensus 129 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 184 (204)
. +..+. ++. .+....+... +++..+|+++|||++|+|+.+.
T Consensus 76 -~--~~~~~-~~~-~~~~~~~~~~----------~~v~~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 76 -P--WLAVP-FSD-RERRSRLNRT----------FKIEGIPTLIILDADGEVVTTD 116 (131)
T ss_pred -C--eeEcc-cCC-HHHHHHHHHH----------cCCCCCCEEEEECCCCCEEccc
Confidence 2 21110 111 0100111111 3777889999999999998764
No 51
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.83 E-value=7.9e-20 Score=131.48 Aligned_cols=109 Identities=15% Similarity=0.207 Sum_probs=77.3
Q ss_pred CCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccc
Q 028736 56 GNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPI 135 (204)
Q Consensus 56 g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (204)
|+.+.+++ +.+|+||++|||+|+.++|.|+++++++ ++.+++|++|. .. . ..||.
T Consensus 44 G~~~~l~~----~~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~-------~~--~---------~~fp~ 98 (153)
T TIGR02738 44 GRHANQDD----YALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG-------QG--L---------TGFPD 98 (153)
T ss_pred chhhhcCC----CEEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC-------Cc--c---------ccccc
Confidence 66666655 4599999999999999999999999988 38899999873 11 0 13454
Q ss_pred eeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcE-EEecCCCCChhHHHHHHHHhh
Q 028736 136 FDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKV-VERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 136 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i-~~~~~g~~~~~~~~~~l~~ll 201 (204)
. .+.........|+. +++..+|++|+||++|++ +..+.|..+.+++++.|+++|
T Consensus 99 ~--~~~~~~~~~~~~~~----------~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 99 P--LPATPEVMQTFFPN----------PRPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred c--cCCchHHHHHHhcc----------CCCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 4 22222111111100 156778999999999886 557899999999999888775
No 52
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.81 E-value=6.2e-20 Score=122.35 Aligned_cols=94 Identities=26% Similarity=0.309 Sum_probs=70.5
Q ss_pred CcEEEEEEeccCCCCCHHhHHHHHHHHHHhc-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYK-NQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 66 gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~-~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
||+++|+||++||++|..+++.|.+++++++ +.++++|+|++|. +.+++++++++ ++.++..+.. + . .
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~-------~~~~~~~~~~~-~~~~~~~~~~-~-~-~ 69 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDE-------DEEEWKKFLKK-NNFPWYNVPF-D-D-D 69 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SS-------SHHHHHHHHHT-CTTSSEEEET-T-T-H
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCC-------CHHHHHHHHHh-cCCCceEEee-C-c-c
Confidence 7999999999999999999999999999999 5579999999973 78899999954 3556555421 1 1 1
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcE
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKV 180 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i 180 (204)
....+... ++|.++|+++|+|++|+|
T Consensus 70 ~~~~l~~~----------~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 70 NNSELLKK----------YGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHHHH----------TT-TSSSEEEEEETTSBE
T ss_pred hHHHHHHH----------CCCCcCCEEEEECCCCCC
Confidence 01112111 488889999999999987
No 53
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.79 E-value=1.1e-18 Score=131.16 Aligned_cols=149 Identities=15% Similarity=0.224 Sum_probs=109.3
Q ss_pred cceEEecCCCCeeecCCCCCcEEEEEEeccCCCC-CHHhHHHHHHHHHHhcCC---CeEEEEEeCCCCCCCCCCCHHHHH
Q 028736 47 YDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGL-TQSNYKELNVLYEKYKNQ---DFEVLAFPCNQFAGQEPGSNEEIQ 122 (204)
Q Consensus 47 p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~-C~~~~~~l~~l~~~~~~~---~~~~i~v~~d~~~~~~~~~~~~~~ 122 (204)
-+|+|.|.+|+.++-.+++|||++++|.+|+||+ |+.|+..|.++.++..+. .+.-|+|++|+ ++|+++.++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDP----eRD~~~~~~ 195 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDP----ERDSVEVVA 195 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCc----ccCCHHHHH
Confidence 5899999999999999999999999999999999 999999999999998875 24478999998 689999999
Q ss_pred HHHHhhcCccccceeeccCCCCCchhHHH-HHHhhcCC-ccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHh
Q 028736 123 EVACTMFKAEFPIFDKIDVNGKNAAPIYK-FLKSEKGG-FLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNL 200 (204)
Q Consensus 123 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~-~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 200 (204)
+|+++ +.+..--+.+.-..-..+.+.|. |+..+..+ ..-|=|.|.=.+|||||+|+.+..+.-..+++++.+.|..-
T Consensus 196 eY~~e-F~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~ 274 (280)
T KOG2792|consen 196 EYVSE-FHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKH 274 (280)
T ss_pred HHHHh-cChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHH
Confidence 99954 45443322111111111122222 22221111 11135777788999999999998877777888887777553
No 54
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.77 E-value=1.9e-18 Score=125.25 Aligned_cols=132 Identities=17% Similarity=0.215 Sum_probs=98.6
Q ss_pred CCCcccceEEecCC---CCeeecCC-CCCcEEEEEEe-ccCCCCCHHh-HHHHHHHHHHhcCCCe-EEEEEeCCCCCCCC
Q 028736 42 APKSIYDFTVKDIR---GNDVSLSG-YRGKVLLVVNV-ASKCGLTQSN-YKELNVLYEKYKNQDF-EVLAFPCNQFAGQE 114 (204)
Q Consensus 42 ~~~~~p~~~l~~~~---g~~~~l~~-~~gk~~lv~f~-~t~C~~C~~~-~~~l~~l~~~~~~~~~-~~i~v~~d~~~~~~ 114 (204)
+|+.+|+|++.+.+ |+.+++++ ++||++||+|+ +.|||.|..+ ++.+++.++++.+.++ .+++||.|
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D------ 74 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN------ 74 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC------
Confidence 47899999999985 99999999 58876666555 6899999999 9999999999999898 69999975
Q ss_pred CCCHHHHHHHHHhhcCc--cccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCC
Q 028736 115 PGSNEEIQEVACTMFKA--EFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT 188 (204)
Q Consensus 115 ~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~ 188 (204)
++...++|.++. +. +|+++ .|.+.. ..+.|+....... .+.+....+.+|||| +|+|++.+....
T Consensus 75 --~~~~~~~~~~~~-~~~~~f~lL--sD~~~~-~~~~ygv~~~~~~--~~~~~~~~R~~fiId-~g~I~~~~~~~~ 141 (155)
T cd03013 75 --DPFVMKAWGKAL-GAKDKIRFL--ADGNGE-FTKALGLTLDLSA--AGGGIRSKRYALIVD-DGKVKYLFVEED 141 (155)
T ss_pred --CHHHHHHHHHhh-CCCCcEEEE--ECCCHH-HHHHcCCCccccc--cCCcceeeeEEEEEC-CCEEEEEEEecC
Confidence 688899999654 76 89999 566544 3344444322110 111111247889999 699999875544
No 55
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=6.9e-18 Score=122.85 Aligned_cols=141 Identities=20% Similarity=0.289 Sum_probs=108.4
Q ss_pred CCCcccceEEecC-CCC---eeecCCCCCcEEEEEEec-cCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCC
Q 028736 42 APKSIYDFTVKDI-RGN---DVSLSGYRGKVLLVVNVA-SKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPG 116 (204)
Q Consensus 42 ~~~~~p~~~l~~~-~g~---~~~l~~~~gk~~lv~f~~-t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~ 116 (204)
+|+.+|+|+.... .|. +++++++.|||+|++||. ...+.|+.|+..+.+.+++|++.|+++|+||+|
T Consensus 5 Ig~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~D-------- 76 (194)
T COG0450 5 IGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTD-------- 76 (194)
T ss_pred cCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecC--------
Confidence 7899999999987 774 999999999999999996 566779999999999999999999999999997
Q ss_pred CHHHHHHHHH---hhcC---ccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCC--
Q 028736 117 SNEEIQEVAC---TMFK---AEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT-- 188 (204)
Q Consensus 117 ~~~~~~~~~~---~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~-- 188 (204)
+.....+|.+ ++.| .+||++ .|.+++.++ .|+.+..+. ++ .+..+|||||+|+|+.....+.
T Consensus 77 s~fsH~aW~~~~~~~~gi~~i~~Pmi--aD~~~~vs~-~ygvl~~~~------g~-a~R~~FIIDp~g~ir~~~v~~~~i 146 (194)
T COG0450 77 SVFSHKAWKATIREAGGIGKIKFPMI--ADPKGEIAR-AYGVLHPEE------GL-ALRGTFIIDPDGVIRHILVNPLTI 146 (194)
T ss_pred cHHHHHHHHhcHHhcCCccceecceE--EcCchhHHH-HcCCcccCC------Cc-ceeEEEEECCCCeEEEEEEecCCC
Confidence 4555555554 3666 689999 677777554 444443211 22 4578899999999999754333
Q ss_pred --ChhHHHHHHHHh
Q 028736 189 --SPLKIEKDIQNL 200 (204)
Q Consensus 189 --~~~~~~~~l~~l 200 (204)
+.+++...++.+
T Consensus 147 GRn~dEilR~idAl 160 (194)
T COG0450 147 GRNVDEILRVIDAL 160 (194)
T ss_pred CcCHHHHHHHHHHH
Confidence 445666666554
No 56
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=99.76 E-value=2e-17 Score=111.37 Aligned_cols=107 Identities=66% Similarity=1.147 Sum_probs=99.4
Q ss_pred cceEEecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 028736 47 YDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVAC 126 (204)
Q Consensus 47 p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~ 126 (204)
-+|++.|++|+.++++.++||++||.=.||.|+.-. ....|++++++|++++++|+++-+++|+.+|+++.+++++++.
T Consensus 2 Ydf~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~ 80 (108)
T PF00255_consen 2 YDFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCK 80 (108)
T ss_dssp GGSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHC
T ss_pred cceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHH
Confidence 478999999999999999999999999999999988 9999999999999999999999999999999999999999998
Q ss_pred hhcCccccceeeccCCCCCchhHHHHHH
Q 028736 127 TMFKAEFPIFDKIDVNGKNAAPIYKFLK 154 (204)
Q Consensus 127 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 154 (204)
.+++.+||+....+.+|+.+..+|.+++
T Consensus 81 ~~~~~~F~vf~ki~VnG~~ahPly~~LK 108 (108)
T PF00255_consen 81 EKFGVTFPVFEKIDVNGPDAHPLYKYLK 108 (108)
T ss_dssp HCHT-SSEEBS-BBSSSTTB-HHHHHHH
T ss_pred hccCCcccceEEEEecCCCCcHHHHHhC
Confidence 8789999999999999999999998864
No 57
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.73 E-value=1.4e-17 Score=118.91 Aligned_cols=107 Identities=13% Similarity=0.149 Sum_probs=82.6
Q ss_pred ecCCCCeeecCC--CCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhc
Q 028736 52 KDIRGNDVSLSG--YRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMF 129 (204)
Q Consensus 52 ~~~~g~~~~l~~--~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~ 129 (204)
.+.++....+.+ .+||++||+||++||++|+.+.+.+.++.+++... +.++.|++|. . ...+.+ .+
T Consensus 4 ~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd~-------~--~~~~~~-~~- 71 (142)
T cd02950 4 EQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDN-------P--KWLPEI-DR- 71 (142)
T ss_pred HHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcCC-------c--ccHHHH-HH-
Confidence 344444444444 37899999999999999999999999999999764 8888888763 1 111111 11
Q ss_pred CccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhhhc
Q 028736 130 KAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLGS 203 (204)
Q Consensus 130 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~~ 203 (204)
++|..+|+++++|++|+++.++.|..+.+++.+.|+++++.
T Consensus 72 ---------------------------------~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 72 ---------------------------------YRVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred ---------------------------------cCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHcC
Confidence 26677799999999999999999998888999999998753
No 58
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.65 E-value=1.6e-15 Score=102.54 Aligned_cols=89 Identities=13% Similarity=0.184 Sum_probs=67.4
Q ss_pred CCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCC
Q 028736 63 GYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVN 142 (204)
Q Consensus 63 ~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 142 (204)
+.+||++||+||++||++|+.+.|.++++.+++ .++.++.|+.|. + ....+++ ++
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~-------~-~~~~~l~-~~-------------- 66 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDE-------N-DSTMELC-RR-------------- 66 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCC-------C-hHHHHHH-HH--------------
Confidence 346899999999999999999999999999999 358899998762 2 2233333 22
Q ss_pred CCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHH
Q 028736 143 GKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQ 198 (204)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~ 198 (204)
++|..+|+++++ ++|+++.++.|. .++++.+.+.
T Consensus 67 --------------------~~V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 67 --------------------EKIIEVPHFLFY-KDGEKIHEEEGI-GPDELIGDVL 100 (103)
T ss_pred --------------------cCCCcCCEEEEE-eCCeEEEEEeCC-CHHHHHHHHH
Confidence 256667996666 899999999995 5566666554
No 59
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7.9e-15 Score=103.55 Aligned_cols=140 Identities=19% Similarity=0.253 Sum_probs=104.8
Q ss_pred CCCcccceEEecCCCCeeecCCCCC-cEEEEEEec-cCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRG-KVLLVVNVA-SKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNE 119 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~g-k~~lv~f~~-t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~ 119 (204)
.|+.+|||+|.|+||..++|..+.| +++|++|+. ...|.|.++.-.+.+.|++++..+.++++++-| +..
T Consensus 65 ~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D--------~s~ 136 (211)
T KOG0855|consen 65 KGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD--------DSA 136 (211)
T ss_pred cCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC--------chH
Confidence 8999999999999999999999988 577777774 577889999999999999999999999999965 566
Q ss_pred HHHHHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhH-HHHHHH
Q 028736 120 EIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLK-IEKDIQ 198 (204)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~-~~~~l~ 198 (204)
..++|. .+++.+|+++ +|+.++.... +++-++..++..+ ...|++|++|.....+.-...++. +.+.++
T Consensus 137 sqKaF~-sKqnlPYhLL--SDpk~e~ik~-lGa~k~p~gg~~~------Rsh~if~kg~~k~~ik~~~isPevsvd~a~k 206 (211)
T KOG0855|consen 137 SQKAFA-SKQNLPYHLL--SDPKNEVIKD-LGAPKDPFGGLPG------RSHYIFDKGGVKQLIKNNQISPEVSVDEALK 206 (211)
T ss_pred HHHHhh-hhccCCeeee--cCcchhHHHH-hCCCCCCCCCccc------ceEEEEecCCeEEEEEecccCccccHHHHHH
Confidence 777787 5669999999 7787765433 2333322222221 456889888766656555566664 333333
Q ss_pred H
Q 028736 199 N 199 (204)
Q Consensus 199 ~ 199 (204)
-
T Consensus 207 ~ 207 (211)
T KOG0855|consen 207 F 207 (211)
T ss_pred H
Confidence 3
No 60
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.58 E-value=5.3e-15 Score=104.66 Aligned_cols=114 Identities=20% Similarity=0.177 Sum_probs=90.7
Q ss_pred eEEecCCCCeeecC-CCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCC--CeEEEEEeCCCCCCCCCCCHHHHHHHH
Q 028736 49 FTVKDIRGNDVSLS-GYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ--DFEVLAFPCNQFAGQEPGSNEEIQEVA 125 (204)
Q Consensus 49 ~~l~~~~g~~~~l~-~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~--~~~~i~v~~d~~~~~~~~~~~~~~~~~ 125 (204)
..+...+|..+..+ .++||.+.++|-|.|||+|+.-.|.|++++++.+++ .++||.||.| ++.++...|+
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D-------~~~~~~~~y~ 87 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD-------RDEESLDEYM 87 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC-------CCHHHHHHHH
Confidence 57888899888887 579999999999999999999999999999999875 5999999987 4888999999
Q ss_pred HhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEe
Q 028736 126 CTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVER 183 (204)
Q Consensus 126 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~ 183 (204)
.++.+..+.+.. .|......... +.|..+|.+.+++++|+++-.
T Consensus 88 ~~~~~~W~~iPf-~d~~~~~l~~k-------------y~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 88 LEHHGDWLAIPF-GDDLIQKLSEK-------------YEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred HhcCCCeEEecC-CCHHHHHHHHh-------------cccCcCceeEEecCCCCEehH
Confidence 776555554442 22222112221 488889999999999988765
No 61
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.56 E-value=3.5e-14 Score=97.23 Aligned_cols=91 Identities=8% Similarity=-0.039 Sum_probs=72.3
Q ss_pred CCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCC
Q 028736 63 GYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVN 142 (204)
Q Consensus 63 ~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 142 (204)
..+|++++|.||++||++|+...|.+.++.+++...++.+..|+++. .+ ..+ .+
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-------~~----~l~-~~-------------- 74 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-------ER----RLA-RK-------------- 74 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-------cH----HHH-HH--------------
Confidence 34689999999999999999999999999999986568888888652 11 111 22
Q ss_pred CCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHh
Q 028736 143 GKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNL 200 (204)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 200 (204)
.+|..+|+++++ ++|+++.+..|..+.+.+.+.|+++
T Consensus 75 --------------------~~V~~~Pt~~i~-~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 75 --------------------LGAHSVPAIVGI-INGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred --------------------cCCccCCEEEEE-ECCEEEEEecCCCCHHHHHHHHhcC
Confidence 156667999999 5999999999988888888877654
No 62
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.55 E-value=1.4e-14 Score=113.82 Aligned_cols=110 Identities=16% Similarity=0.138 Sum_probs=82.7
Q ss_pred CCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCcccc
Q 028736 55 RGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFP 134 (204)
Q Consensus 55 ~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (204)
..+...+++++|+++||+||++||++|..+.|.|+++.++++ +.+++|++|. ... ..||
T Consensus 155 ~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---~~Vi~VsvD~-------~~~-----------~~fp 213 (271)
T TIGR02740 155 KQKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---IEVLPVSVDG-------GPL-----------PGFP 213 (271)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---cEEEEEeCCC-------Ccc-----------ccCC
Confidence 345577888999999999999999999999999999999985 8999999874 111 1244
Q ss_pred ceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCC-CcEEEecCCCCChhHHHHHHHHhhh
Q 028736 135 IFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKE-GKVVERYAPTTSPLKIEKDIQNLLG 202 (204)
Q Consensus 135 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~-G~i~~~~~g~~~~~~~~~~l~~ll~ 202 (204)
.. +.+.....+ .+|..+|++||+|++ |++.....|..+.+++.+.+..+..
T Consensus 214 ~~---~~d~~la~~--------------~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 214 NA---RPDAGQAQQ--------------LKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred cc---cCCHHHHHH--------------cCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 43 111111111 278889999999995 6666667788899999988887654
No 63
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.55 E-value=3.4e-14 Score=96.14 Aligned_cols=90 Identities=16% Similarity=0.075 Sum_probs=69.3
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHH---HHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKEL---NVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDV 141 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l---~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 141 (204)
+||+++|+||++||++|+...+.+ .++.+.+.+ ++.++.|+++. +.....+++ .+
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~~~~~~~~-~~------------- 67 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTK-------NDPEITALL-KR------------- 67 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCC-------CCHHHHHHH-HH-------------
Confidence 579999999999999999998877 577777765 68999988652 222233333 22
Q ss_pred CCCCchhHHHHHHhhcCCccccccccceeeEEECC-CCcEEEecCCCCChhHHHHHH
Q 028736 142 NGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNK-EGKVVERYAPTTSPLKIEKDI 197 (204)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l 197 (204)
.++..+|+++++++ +|+++.++.|..+.+.+.+.|
T Consensus 68 ---------------------~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 68 ---------------------FGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred ---------------------cCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHh
Confidence 15566799999999 999999999999988877765
No 64
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=5.9e-14 Score=98.49 Aligned_cols=90 Identities=20% Similarity=0.214 Sum_probs=75.6
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
.++||+|.|||+||.+|+...|.|+++..+|.+. +.+.-|++|. ..+-+ ++
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD~-------~~ela-----~~---------------- 110 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTDE-------HPELA-----ED---------------- 110 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEcccc-------ccchH-----hh----------------
Confidence 5689999999999999999999999999999664 9999998763 11111 11
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhhh
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLG 202 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 202 (204)
|+|+++|+++++ ++|..+.+..|..+.+.+.+.|+++++
T Consensus 111 ------------------Y~I~avPtvlvf-knGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 111 ------------------YEISAVPTVLVF-KNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred ------------------cceeeeeEEEEE-ECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 378888999999 689999999999999999999999875
No 65
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.54 E-value=2.3e-14 Score=100.20 Aligned_cols=105 Identities=13% Similarity=0.186 Sum_probs=74.9
Q ss_pred CC-cEEEEEEeccCCCCCHHhHHHHH---HHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeecc
Q 028736 65 RG-KVLLVVNVASKCGLTQSNYKELN---VLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKID 140 (204)
Q Consensus 65 ~g-k~~lv~f~~t~C~~C~~~~~~l~---~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 140 (204)
.| |+++|+||++||++|+...+.+. ++.+.+.+ ++.++.|+++. +.. +..| +..
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~-------~~~-~~~~---------~~~---- 69 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDG-------DKE-VTDF---------DGE---- 69 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccC-------Cce-eecc---------CCC----
Confidence 67 99999999999999999998875 56566654 58888898763 111 1111 100
Q ss_pred CCCCCchhHHHHHHhhcCCccccccccceeeEEECCC-CcEEEecCCCCChhHHHHHHHHhhhc
Q 028736 141 VNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKE-GKVVERYAPTTSPLKIEKDIQNLLGS 203 (204)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~-G~i~~~~~g~~~~~~~~~~l~~ll~~ 203 (204)
......+... ++|..+|+++++|++ |+++.+..|..+.+.+.+.|+.+++.
T Consensus 70 --~~~~~~l~~~----------~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 70 --ALSEKELARK----------YRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred --CccHHHHHHH----------cCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 0001111111 367788999999999 89999999998989999999998764
No 66
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.51 E-value=1.7e-13 Score=92.40 Aligned_cols=87 Identities=13% Similarity=0.106 Sum_probs=67.0
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
.|++++|+||++||++|+...+.+.++.++++...+.++.|+.| .++ .+ ++
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--------~~~----~~-~~---------------- 66 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--------TID----TL-KR---------------- 66 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--------CHH----HH-HH----------------
Confidence 57999999999999999999999999999998656788888754 121 11 22
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHh
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNL 200 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 200 (204)
++|..+|+++++ ++|+.+.+..|. +++.+.+.|+++
T Consensus 67 ------------------~~v~~~Pt~~~~-~~g~~~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 67 ------------------YRGKCEPTFLFY-KNGELVAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred ------------------cCCCcCcEEEEE-ECCEEEEEEecC-ChHHHHHHHhhC
Confidence 256666976666 699999998885 777888877654
No 67
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.51 E-value=9.2e-14 Score=93.33 Aligned_cols=85 Identities=19% Similarity=0.103 Sum_probs=63.4
Q ss_pred CCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccC
Q 028736 62 SGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDV 141 (204)
Q Consensus 62 ~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 141 (204)
++.+||+++|.||++||++|+.+.|.+.++.+++++ +.++.|..+. ... ... .+
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~-------~~~---~l~-~~------------- 67 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESS-------IKP---SLL-SR------------- 67 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCC-------CCH---HHH-Hh-------------
Confidence 457899999999999999999999999999999874 7777775320 000 001 11
Q ss_pred CCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHH
Q 028736 142 NGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEK 195 (204)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ 195 (204)
++|.++|+++++++ | .+.++.|..+.+.+.+
T Consensus 68 ---------------------~~V~~~PT~~lf~~-g-~~~~~~G~~~~~~l~~ 98 (100)
T cd02999 68 ---------------------YGVVGFPTILLFNS-T-PRVRYNGTRTLDSLAA 98 (100)
T ss_pred ---------------------cCCeecCEEEEEcC-C-ceeEecCCCCHHHHHh
Confidence 26777799999974 5 6678889887776654
No 68
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.50 E-value=2e-13 Score=90.94 Aligned_cols=86 Identities=15% Similarity=0.204 Sum_probs=68.0
Q ss_pred CCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCC
Q 028736 64 YRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNG 143 (204)
Q Consensus 64 ~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 143 (204)
.+|+++||+||++||++|+...+.++++.+.+.. .+.++.|+++. .. ... ++
T Consensus 10 ~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~----~l~-~~--------------- 61 (96)
T cd02956 10 STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDA-------QP----QIA-QQ--------------- 61 (96)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccC-------CH----HHH-HH---------------
Confidence 3578999999999999999999999999999976 48888887653 11 111 22
Q ss_pred CCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHH
Q 028736 144 KNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 197 (204)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l 197 (204)
.+|..+|++++++ +|+++.++.|..+.+++.+.|
T Consensus 62 -------------------~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 62 -------------------FGVQALPTVYLFA-AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred -------------------cCCCCCCEEEEEe-CCEEeeeecCCCCHHHHHHHh
Confidence 1555669999996 999999999988888777765
No 69
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.46 E-value=1.1e-13 Score=94.78 Aligned_cols=106 Identities=23% Similarity=0.221 Sum_probs=68.4
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHH---HhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYE---KYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDV 141 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~---~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 141 (204)
+||+++++||++|||+|+...+.+.+..+ .+.+ ++.++.++++. +......++..+ +.......
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~---- 70 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDD-------SRDESEAVLDFD-GQKNVRLS---- 70 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHS-------HHHHHHHHHSHT-CHSSCHHH----
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCC-------cccccccccccc-cchhhhHH----
Confidence 67999999999999999988888886443 3333 58899988752 344444455322 32222111
Q ss_pred CCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHH
Q 028736 142 NGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 197 (204)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l 197 (204)
..++... .+|.++|+++++|++|+++.+..|..+++++.+.|
T Consensus 71 ----~~~l~~~----------~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 71 ----NKELAQR----------YGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp ----HHHHHHH----------TT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred ----HHHHHHH----------cCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 0111111 37888999999999999999999999998887765
No 70
>PRK09381 trxA thioredoxin; Provisional
Probab=99.46 E-value=8.5e-13 Score=89.98 Aligned_cols=89 Identities=20% Similarity=0.188 Sum_probs=71.2
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
.+++++|+||++|||+|+...+.++++.+++... +.++.|+++. .+. + . .+
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~~~-------~~~-~---~-~~---------------- 70 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NPG-T---A-PK---------------- 70 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEECCC-------Chh-H---H-Hh----------------
Confidence 4689999999999999999999999999999864 8888888763 111 1 1 11
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhh
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 201 (204)
.++..+|+++++ ++|+++.+..|..+.+++.+.|...|
T Consensus 71 ------------------~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 71 ------------------YGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred ------------------CCCCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 145556998888 69999999999888888888887765
No 71
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.44 E-value=6.4e-13 Score=89.38 Aligned_cols=84 Identities=12% Similarity=0.190 Sum_probs=65.8
Q ss_pred CCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCC
Q 028736 64 YRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNG 143 (204)
Q Consensus 64 ~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 143 (204)
.++++++|.||++||++|+...|.+.++.+++++. +.+..|++|. .+ ..+ ++
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~-------~~----~~~-~~--------------- 67 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGD-------DR----MLC-RS--------------- 67 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCc-------cH----HHH-HH---------------
Confidence 35689999999999999999999999999999864 8889998763 11 122 22
Q ss_pred CCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHH
Q 028736 144 KNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEK 195 (204)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ 195 (204)
.+|..+|+++++ ++|+...++.|..+.+.+.+
T Consensus 68 -------------------~~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 68 -------------------QGVNSYPSLYVF-PSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred -------------------cCCCccCEEEEE-cCCCCcccCCCCCCHHHHHh
Confidence 145566998888 78998888999888776554
No 72
>PHA02278 thioredoxin-like protein
Probab=99.43 E-value=1e-12 Score=88.42 Aligned_cols=87 Identities=15% Similarity=0.259 Sum_probs=63.6
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
+++++||+|||+||++|+...|.+.++.+++.. .+.++.|++|. .+-...+ +.++
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~-------~~~d~~~-l~~~---------------- 67 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDA-------EDVDREK-AVKL---------------- 67 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCc-------cccccHH-HHHH----------------
Confidence 679999999999999999999999999887543 36678888763 1000111 1122
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHH
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEK 195 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ 195 (204)
.+|..+|+++++ ++|+.+.+..|..+.+.+.+
T Consensus 68 ------------------~~I~~iPT~i~f-k~G~~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 68 ------------------FDIMSTPVLIGY-KDGQLVKKYEDQVTPMQLQE 99 (103)
T ss_pred ------------------CCCccccEEEEE-ECCEEEEEEeCCCCHHHHHh
Confidence 266777998888 58999999999877766544
No 73
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.42 E-value=1e-12 Score=89.46 Aligned_cols=78 Identities=12% Similarity=-0.040 Sum_probs=61.1
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
.++++||.|||+||++|+...|.+.++.+++.+. +.++-|++|. .++ .. ++
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~-------~~~----la-~~---------------- 63 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE-------VPD----FN-KM---------------- 63 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC-------CHH----HH-HH----------------
Confidence 4689999999999999999999999999999864 7888898763 221 11 22
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCCh
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSP 190 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~ 190 (204)
++|..+|+++++ ++|+.+.+..|..+.
T Consensus 64 ------------------~~V~~iPTf~~f-k~G~~v~~~~G~~~~ 90 (114)
T cd02954 64 ------------------YELYDPPTVMFF-FRNKHMKIDLGTGNN 90 (114)
T ss_pred ------------------cCCCCCCEEEEE-ECCEEEEEEcCCCCC
Confidence 266677998888 689999998775544
No 74
>PRK10996 thioredoxin 2; Provisional
Probab=99.42 E-value=2.2e-12 Score=91.75 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=71.1
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
.+|+++|+||++||++|+...+.+.++.+++.. ++.++.|+++. .+ +.. ++
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~-------~~----~l~-~~---------------- 101 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEA-------ER----ELS-AR---------------- 101 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCC-------CH----HHH-Hh----------------
Confidence 579999999999999999999999999998876 48888887642 11 111 22
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhh
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 201 (204)
.+|..+|+++++ ++|+++.++.|..+.+.+.+.|++++
T Consensus 102 ------------------~~V~~~Ptlii~-~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 102 ------------------FRIRSIPTIMIF-KNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred ------------------cCCCccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 255666998877 58999999999999889999998764
No 75
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=5.1e-13 Score=103.47 Aligned_cols=94 Identities=18% Similarity=0.278 Sum_probs=77.7
Q ss_pred cCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeecc
Q 028736 61 LSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKID 140 (204)
Q Consensus 61 l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 140 (204)
+...+.+||||+||++||++|+..+|.|.++..+++.+ +.+.-||+|. .+... .+
T Consensus 38 ~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~-------~p~vA-----aq------------ 92 (304)
T COG3118 38 IQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDA-------EPMVA-----AQ------------ 92 (304)
T ss_pred HHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCc-------chhHH-----HH------------
Confidence 34445589999999999999999999999999999985 9999999873 22211 22
Q ss_pred CCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhhh
Q 028736 141 VNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLG 202 (204)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 202 (204)
+ +|..+|++|++ ++|+.+.-+.|..+.+.+++.|.+++.
T Consensus 93 --------f--------------giqsIPtV~af-~dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 93 --------F--------------GVQSIPTVYAF-KDGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred --------h--------------CcCcCCeEEEe-eCCcCccccCCCCcHHHHHHHHHHhcC
Confidence 1 67778999999 799999999999888899999988764
No 76
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.41 E-value=2.2e-12 Score=86.72 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=64.1
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
+|+ ++|.||++||++|+...|.+.++.+.++..++.+..|+++. .+. .. ++
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-------~~~----~~-~~---------------- 66 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-------EPG----LS-GR---------------- 66 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-------CHh----HH-HH----------------
Confidence 556 57999999999999999999999998776568888887652 121 11 22
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHH
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQ 198 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~ 198 (204)
++|..+|+++++ ++|++ ..+.|..+.+.+.+.|+
T Consensus 67 ------------------~~i~~~Pt~~~~-~~g~~-~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 67 ------------------FFVTALPTIYHA-KDGVF-RRYQGPRDKEDLISFIE 100 (101)
T ss_pred ------------------cCCcccCEEEEe-CCCCE-EEecCCCCHHHHHHHHh
Confidence 256666998887 88986 67888888877776654
No 77
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.37 E-value=3.8e-12 Score=86.84 Aligned_cols=87 Identities=21% Similarity=0.172 Sum_probs=65.7
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
+||+++|.||++||++|+...+.+.++.+.+++.++.+..|++|. +.. .++.+.
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~-------~~~---~~~~~~---------------- 73 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG-------EQR---EFAKEE---------------- 73 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc-------cch---hhHHhh----------------
Confidence 579999999999999999999999999999997679999998762 111 112111
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCC-CChhHHHH
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPT-TSPLKIEK 195 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~-~~~~~~~~ 195 (204)
.++..+|++++++++++....|.|. .+.+.+..
T Consensus 74 ------------------~~v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~ 107 (109)
T cd02993 74 ------------------LQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLM 107 (109)
T ss_pred ------------------cCCCcCCEEEEEcCCCCCceeccCCCCCHHHHHh
Confidence 1455669999999888877788874 46665543
No 78
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.37 E-value=1.2e-11 Score=85.95 Aligned_cols=97 Identities=9% Similarity=0.053 Sum_probs=65.9
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
.|+.++|+|+++|||+|+...|.|.++.++. +..+..|++|.....+..+.+++.++. ++++...
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~-~~~~i~~----------- 86 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFR-SRFGIPT----------- 86 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHH-HHcCCcc-----------
Confidence 5688999999999999999999999999982 366777777632111222334566665 3322111
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCC-ChhHHHHH
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT-SPLKIEKD 196 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~-~~~~~~~~ 196 (204)
++.++|+++++ ++|+.+.+..|.. +.+++.+-
T Consensus 87 -------------------~i~~~PT~v~~-k~Gk~v~~~~G~~~~~~~l~~~ 119 (122)
T TIGR01295 87 -------------------SFMGTPTFVHI-TDGKQVSVRCGSSTTAQELQDI 119 (122)
T ss_pred -------------------cCCCCCEEEEE-eCCeEEEEEeCCCCCHHHHHHH
Confidence 45556998888 6899999987743 44455443
No 79
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.36 E-value=1.2e-11 Score=94.25 Aligned_cols=90 Identities=19% Similarity=0.087 Sum_probs=69.2
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
.+++++|+||++||++|+...|.++++.+++++. +.+..|+++. .+ +.. ++
T Consensus 51 ~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~~-------~~----~l~-~~---------------- 101 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDATR-------AL----NLA-KR---------------- 101 (224)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCcc-------cH----HHH-HH----------------
Confidence 3589999999999999999999999999999863 6676675442 11 111 22
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhhh
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLG 202 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 202 (204)
++|..+|++++++ +|+++..+.|..+.+++.+.+++.++
T Consensus 102 ------------------~~I~~~PTl~~f~-~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 102 ------------------FAIKGYPTLLLFD-KGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred ------------------cCCCcCCEEEEEE-CCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 2566679999997 79998888888888888888777654
No 80
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.35 E-value=7e-12 Score=84.75 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=64.4
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCC--CeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ--DFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVN 142 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~--~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 142 (204)
++++++|.||++|||+|+...|.++++.++++.. ++.+..++++. .+ ... ++
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~-------~~----~~~-~~-------------- 67 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA-------YS----SIA-SE-------------- 67 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc-------CH----hHH-hh--------------
Confidence 4579999999999999999999999999999654 36666666542 11 111 11
Q ss_pred CCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHh
Q 028736 143 GKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNL 200 (204)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 200 (204)
.+|..+|++++++ +| ....+.|..+.+.+.+.+++.
T Consensus 68 --------------------~~I~~~Pt~~l~~-~~-~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 68 --------------------FGVRGYPTIKLLK-GD-LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred --------------------cCCccccEEEEEc-CC-CceeecCCCCHHHHHHHHHhh
Confidence 2666779999994 45 446788888888888877764
No 81
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.35 E-value=8.2e-12 Score=84.33 Aligned_cols=84 Identities=21% Similarity=0.151 Sum_probs=64.7
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
.+++++|.||++||++|+...|.++++.+++.. .+.+..|+++. .. +.+ ++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~--------~~---~~~-~~---------------- 68 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQK--------YE---SLC-QQ---------------- 68 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCc--------hH---HHH-HH----------------
Confidence 457999999999999999999999999999865 48888888652 11 122 22
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCC-hhHHHH
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTS-PLKIEK 195 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~-~~~~~~ 195 (204)
.+|..+|+++++.++|+.+..+.|..+ .+++.+
T Consensus 69 ------------------~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~ 102 (104)
T cd03004 69 ------------------ANIRAYPTIRLYPGNASKYHSYNGWHRDADSILE 102 (104)
T ss_pred ------------------cCCCcccEEEEEcCCCCCceEccCCCCCHHHHHh
Confidence 155666999999877688889999775 666654
No 82
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.35 E-value=3e-12 Score=86.01 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=62.6
Q ss_pred EEEEEEeccCCCCCHHhHHHHHHHHHHhcC--CCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCCC
Q 028736 68 VLLVVNVASKCGLTQSNYKELNVLYEKYKN--QDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKN 145 (204)
Q Consensus 68 ~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~--~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 145 (204)
+++|+||++||++|+...|.+++++++++. ..+.++.|+++. .. ..+ ++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~-------~~----~~~-~~----------------- 68 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ-------HR----ELC-SE----------------- 68 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC-------Ch----hhH-hh-----------------
Confidence 599999999999999999999999999976 358888887652 11 111 11
Q ss_pred chhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHH
Q 028736 146 AAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKD 196 (204)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~ 196 (204)
.+|..+|+++++ ++|+.+..+.|..+.+.+.+.
T Consensus 69 -----------------~~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~ 101 (102)
T cd03005 69 -----------------FQVRGYPTLLLF-KDGEKVDKYKGTRDLDSLKEF 101 (102)
T ss_pred -----------------cCCCcCCEEEEE-eCCCeeeEeeCCCCHHHHHhh
Confidence 155666999999 688888889998887766543
No 83
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.35 E-value=1.1e-11 Score=89.00 Aligned_cols=81 Identities=17% Similarity=0.057 Sum_probs=61.2
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
++++++|+||++||++|+...|.++++.+++...++.++.|++|. .++.. ++++..-.
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~-------~~~la-----~~~~V~~~---------- 103 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR-------FPNVA-----EKFRVSTS---------- 103 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC-------CHHHH-----HHcCceec----------
Confidence 568999999999999999999999999999986679999999873 33222 22221100
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCC
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAP 186 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g 186 (204)
.+++.+|+++++ ++|+.+.+..|
T Consensus 104 ------------------~~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 104 ------------------PLSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred ------------------CCcCCCCEEEEE-ECCEEEEEEec
Confidence 144556998888 58999998876
No 84
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.34 E-value=1.1e-11 Score=82.81 Aligned_cols=85 Identities=14% Similarity=0.241 Sum_probs=66.4
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
.+++++++||++||+.|+...+.+.++.+++.. ++.++.|+.|. .++ .. ++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~-------~~~----l~-~~---------------- 62 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDE-------DQE----IA-EA---------------- 62 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCC-------CHH----HH-HH----------------
Confidence 568999999999999999999999999999875 48888887652 221 11 11
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHH
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 197 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l 197 (204)
.+|.++|++++++ +|+++.+..|..+.+.+.+.|
T Consensus 63 ------------------~~v~~vPt~~i~~-~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 63 ------------------AGIMGTPTVQFFK-DKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred ------------------CCCeeccEEEEEE-CCeEEEEEeCCccHHHHHHhh
Confidence 1455569999995 899999999988887776655
No 85
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.34 E-value=8e-12 Score=85.52 Aligned_cols=84 Identities=17% Similarity=0.103 Sum_probs=65.2
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
.++++||.||++||++|+...|.+.++.+++++. +.++.|+++. ... + +.++
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~-------~~~-l---~~~~---------------- 79 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWW-------PQG-K---CRKQ---------------- 79 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCC-------ChH-H---HHHh----------------
Confidence 5589999999999999999999999999999764 8889998762 121 1 2112
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHH
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEK 195 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ 195 (204)
++|..+|++.++ ++|+....+.|..+.+.+..
T Consensus 80 ------------------~~I~~~PTl~lf-~~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 80 ------------------KHFFYFPVIHLY-YRSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred ------------------cCCcccCEEEEE-ECCccceEEeCCCCHHHHHh
Confidence 145556998888 78888888889888877765
No 86
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.4e-11 Score=83.11 Aligned_cols=85 Identities=25% Similarity=0.279 Sum_probs=67.3
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
.+|+++|+|+|+||++|+...|.+.++..+|.+ +.++-|++| + ....+++
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvd-------e----~~~~~~~----------------- 69 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVD-------E----LEEVAKE----------------- 69 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecc-------c----CHhHHHh-----------------
Confidence 369999999999999999999999999999997 889999875 1 3333322
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHH
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQN 199 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ 199 (204)
.+|..+|++.++ ++|+.+....|. +.+++++.+.+
T Consensus 70 ------------------~~V~~~PTf~f~-k~g~~~~~~vGa-~~~~l~~~i~~ 104 (106)
T KOG0907|consen 70 ------------------FNVKAMPTFVFY-KGGEEVDEVVGA-NKAELEKKIAK 104 (106)
T ss_pred ------------------cCceEeeEEEEE-ECCEEEEEEecC-CHHHHHHHHHh
Confidence 267777998888 899999998886 44466665544
No 87
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=9.5e-12 Score=88.80 Aligned_cols=133 Identities=17% Similarity=0.177 Sum_probs=96.3
Q ss_pred CCCcccceEEe---cCCCCeeecCCCCCcEEEEEEeccCCCC-CHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCC
Q 028736 42 APKSIYDFTVK---DIRGNDVSLSGYRGKVLLVVNVASKCGL-TQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGS 117 (204)
Q Consensus 42 ~~~~~p~~~l~---~~~g~~~~l~~~~gk~~lv~f~~t~C~~-C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~ 117 (204)
...++|+|.-+ |..-+.++|++++||+++++|+.-.-.+ |+.+.-.+.+.++++++.+.++|++|+| +
T Consensus 6 ~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~D--------S 77 (196)
T KOG0852|consen 6 VFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTD--------S 77 (196)
T ss_pred cCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEecc--------c
Confidence 44556887744 4444789999999999999999765555 9999999999999999999999999997 5
Q ss_pred HHHHHHHHH---hhcCc---cccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChh
Q 028736 118 NEEIQEVAC---TMFKA---EFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPL 191 (204)
Q Consensus 118 ~~~~~~~~~---~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~ 191 (204)
.....+|++ ++.|. ++|++ .|.+.+..+. |+.+.... ++ .+..+|+||++|.++.....++...
T Consensus 78 ~fshlAW~ntprk~gGlg~~~iPll--sD~~~~Isrd-yGvL~~~~------G~-~lRglfIId~~gi~R~it~NDlpvg 147 (196)
T KOG0852|consen 78 VFSHLAWINTPRKQGGLGPLNIPLL--SDLNHEISRD-YGVLKEDE------GI-ALRGLFIIDPDGILRQITINDLPVG 147 (196)
T ss_pred hhhhhhHhcCchhhCCcCcccccee--eccchhhHHh-cCceecCC------Cc-ceeeeEEEccccceEEeeecccCCC
Confidence 666666654 34444 48999 6676665444 44443322 11 2357799999999998655545444
Q ss_pred H
Q 028736 192 K 192 (204)
Q Consensus 192 ~ 192 (204)
+
T Consensus 148 R 148 (196)
T KOG0852|consen 148 R 148 (196)
T ss_pred c
Confidence 3
No 88
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.32 E-value=7.6e-12 Score=85.12 Aligned_cols=88 Identities=17% Similarity=0.114 Sum_probs=65.9
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
.|++++|.||++||++|+...+.+.++.+++.. .+.++.|+++. +. ..+.+ .+
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~------~~---~~~~~-~~---------------- 69 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDE------DK---NKPLC-GK---------------- 69 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCc------cc---cHHHH-HH----------------
Confidence 568999999999999999999999999999875 48888888763 11 11122 11
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCC----cEEEecCCCCChhHHHHHH
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEG----KVVERYAPTTSPLKIEKDI 197 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G----~i~~~~~g~~~~~~~~~~l 197 (204)
.+|..+|+++++++++ .+...+.|..+.+.+.+.|
T Consensus 70 ------------------~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 70 ------------------YGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred ------------------cCCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 1566679999998876 3566788887777776654
No 89
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.32 E-value=1e-11 Score=83.28 Aligned_cols=89 Identities=18% Similarity=0.109 Sum_probs=68.6
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCC-CeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ-DFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNG 143 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~-~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 143 (204)
++++++|.||++||+.|+...+.++++.+.+... ++.++.+.++. . .... ++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--------~---~~~~-~~--------------- 64 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA--------E---KDLA-SR--------------- 64 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc--------h---HHHH-Hh---------------
Confidence 6799999999999999999999999999998865 37777776542 1 1111 11
Q ss_pred CCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHh
Q 028736 144 KNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNL 200 (204)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 200 (204)
.+|..+|+++++++++. ...+.|..+.+.+.+.|++.
T Consensus 65 -------------------~~i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 65 -------------------FGVSGFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred -------------------CCCCcCCEEEEecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence 25566699999998887 66788888888888877764
No 90
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.30 E-value=3.4e-12 Score=88.09 Aligned_cols=97 Identities=10% Similarity=0.087 Sum_probs=61.4
Q ss_pred cCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeecc
Q 028736 61 LSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKID 140 (204)
Q Consensus 61 l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 140 (204)
.+..+||++||+||++||++|+...+.+.+....... ...++.|.+|. +..... +.++
T Consensus 14 ~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~------~~~~~~-----~~~~---------- 71 (117)
T cd02959 14 EAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLED------DEEPKD-----EEFS---------- 71 (117)
T ss_pred HHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEecC------CCCchh-----hhcc----------
Confidence 3445789999999999999999999999997665432 23455555542 111111 1100
Q ss_pred CCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEe---cCCCCChhHHHHHHHHhh
Q 028736 141 VNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVER---YAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~---~~g~~~~~~~~~~l~~ll 201 (204)
..+ ..+|+++++|++|+++.+ ..|..+.+.+.+.|+.+.
T Consensus 72 ~~g----------------------~~vPt~~f~~~~Gk~~~~~~~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 72 PDG----------------------GYIPRILFLDPSGDVHPEIINKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred cCC----------------------CccceEEEECCCCCCchhhccCCCCccccccCCCHHHHH
Confidence 000 014999999999999885 445555555666665554
No 91
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.30 E-value=3.3e-11 Score=85.13 Aligned_cols=91 Identities=8% Similarity=0.019 Sum_probs=66.4
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
.++++||.||++||++|+...|.|.++.+++++. +.++-|++|. .+ ++. ++|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe-------~~----dla-~~y--------------- 73 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITE-------VP----DFN-TMY--------------- 73 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCC-------CH----HHH-HHc---------------
Confidence 5689999999999999999999999999999764 7778888763 22 222 221
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCc-EEEecCC--------CCChhHHHHHHHHhhh
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGK-VVERYAP--------TTSPLKIEKDIQNLLG 202 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~-i~~~~~g--------~~~~~~~~~~l~~ll~ 202 (204)
+|...|+++++=++|+ .+.+..| ..+.+++.+.++.++.
T Consensus 74 -------------------~I~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 74 -------------------ELYDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred -------------------CccCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHH
Confidence 3332356664447888 8888888 4566778888877654
No 92
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.30 E-value=3.7e-11 Score=80.28 Aligned_cols=88 Identities=23% Similarity=0.254 Sum_probs=69.5
Q ss_pred CcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCCC
Q 028736 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKN 145 (204)
Q Consensus 66 gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 145 (204)
+++++|+||++||+.|+...+.++++.+++.. ++.++.|..+. +. ..+ .+
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~-------~~----~~~-~~----------------- 63 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDE-------NP----DIA-AK----------------- 63 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCC-------CH----HHH-HH-----------------
Confidence 47999999999999999999999999998875 48899887652 11 111 11
Q ss_pred chhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhh
Q 028736 146 AAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 201 (204)
.++..+|+++++ ++|++.....|..+.+.+.+.|++.+
T Consensus 64 -----------------~~v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 64 -----------------YGIRSIPTLLLF-KNGKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred -----------------cCCCcCCEEEEE-eCCcEeeeecCCCCHHHHHHHHHhhC
Confidence 155566999999 68999888888888888888887653
No 93
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.25 E-value=2.7e-11 Score=82.44 Aligned_cols=85 Identities=18% Similarity=0.148 Sum_probs=62.4
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCC-----CeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeec
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ-----DFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKI 139 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~-----~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (204)
.+++++|.||++||++|+...|.+.++.+.+++. .+.+..|++|. .. +.+ ++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~-------~~----~l~-~~----------- 73 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK-------ES----DIA-DR----------- 73 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC-------CH----HHH-Hh-----------
Confidence 4589999999999999999999999999887532 37777887763 11 122 22
Q ss_pred cCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCc-EEEecCCCCChhHHHHH
Q 028736 140 DVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGK-VVERYAPTTSPLKIEKD 196 (204)
Q Consensus 140 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~-i~~~~~g~~~~~~~~~~ 196 (204)
.+|..+|+++++ ++|+ +...+.|..+.+.+.+.
T Consensus 74 -----------------------~~v~~~Ptl~~~-~~g~~~~~~~~g~~~~~~l~~f 107 (108)
T cd02996 74 -----------------------YRINKYPTLKLF-RNGMMMKREYRGQRSVEALAEF 107 (108)
T ss_pred -----------------------CCCCcCCEEEEE-eCCcCcceecCCCCCHHHHHhh
Confidence 256666999998 6888 45778887777766553
No 94
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.25 E-value=2.3e-11 Score=81.92 Aligned_cols=87 Identities=22% Similarity=0.198 Sum_probs=62.9
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCC-CeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ-DFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNG 143 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~-~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 143 (204)
++++++|.||++||++|+...+.++++.+.+... .+.++.|+++. + ...... .+
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~------~---~~~~~~-~~--------------- 70 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK------P---EHDALK-EE--------------- 70 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC------C---ccHHHH-Hh---------------
Confidence 5679999999999999999999999999998743 46777776542 0 011111 11
Q ss_pred CCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHH
Q 028736 144 KNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKD 196 (204)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~ 196 (204)
.+|..+|+++++ ++|+++..+.|..+.+.+.+.
T Consensus 71 -------------------~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 71 -------------------YNVKGFPTFKYF-ENGKFVEKYEGERTAEDIIEF 103 (104)
T ss_pred -------------------CCCccccEEEEE-eCCCeeEEeCCCCCHHHHHhh
Confidence 155556986655 689988899998887776553
No 95
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.25 E-value=3.7e-11 Score=103.72 Aligned_cols=96 Identities=14% Similarity=0.083 Sum_probs=70.8
Q ss_pred CCCCCcEEEEEEeccCCCCCHHhHHHH---HHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceee
Q 028736 62 SGYRGKVLLVVNVASKCGLTQSNYKEL---NVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDK 138 (204)
Q Consensus 62 ~~~~gk~~lv~f~~t~C~~C~~~~~~l---~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (204)
+..+||+++|+||++||++|+..-+.. .++.++++ ++.++.|+++. +.++.++++ ++
T Consensus 470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~-------~~~~~~~l~-~~---------- 529 (571)
T PRK00293 470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTA-------NNAEDVALL-KH---------- 529 (571)
T ss_pred HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCC-------CChhhHHHH-HH----------
Confidence 345689999999999999999876654 56666665 47788887763 222333333 22
Q ss_pred ccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEE--EecCCCCChhHHHHHHHHhh
Q 028736 139 IDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVV--ERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~--~~~~g~~~~~~~~~~l~~ll 201 (204)
+++..+|+++++|+||+++ .++.|..+++++.+.|+++.
T Consensus 530 ------------------------~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 530 ------------------------YNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred ------------------------cCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 2555669999999999984 67889889999999998764
No 96
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.24 E-value=8.3e-11 Score=78.87 Aligned_cols=87 Identities=22% Similarity=0.289 Sum_probs=70.9
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
.++++||+|+++||++|+...|.+.++.+++.+ ++.++.|+++. . ...+ ++
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~-------~----~~l~-~~---------------- 66 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE-------N----KELC-KK---------------- 66 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-------S----HHHH-HH----------------
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhc-------c----chhh-hc----------------
Confidence 469999999999999999999999999999998 79999998652 2 2222 22
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHH
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQN 199 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ 199 (204)
.+|..+|+++++ ++|+...++.|..+.+.+.+.|++
T Consensus 67 ------------------~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 67 ------------------YGVKSVPTIIFF-KNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp ------------------TTCSSSSEEEEE-ETTEEEEEEESSSSHHHHHHHHHH
T ss_pred ------------------cCCCCCCEEEEE-ECCcEEEEEECCCCHHHHHHHHHc
Confidence 256666998888 578888899999999999988875
No 97
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.2e-10 Score=80.10 Aligned_cols=126 Identities=19% Similarity=0.185 Sum_probs=91.7
Q ss_pred CCCcccceEEecCCCCeeecCCCCCcEEEEEEe-ccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNV-ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEE 120 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~-~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~ 120 (204)
+|+.+|+|++.+.+.+.+++.++.||..+|..+ +-..|.|-.+..++++...++.+ ..++.||.| -+-.
T Consensus 20 vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~--~~Vl~IS~D--------LPFA 89 (158)
T COG2077 20 VGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN--TVVLCISMD--------LPFA 89 (158)
T ss_pred cCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC--cEEEEEeCC--------ChhH
Confidence 899999999999999999999999987777655 55788899999999999998886 889999976 6888
Q ss_pred HHHHHHhhcCcc-ccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEec
Q 028736 121 IQEVACTMFKAE-FPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERY 184 (204)
Q Consensus 121 ~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 184 (204)
.++|+.++ |.. -..+ +|-......+-|+..-.+.. + .++-+ .+.+++|.+|+|++.-
T Consensus 90 q~RfC~ae-Gi~nv~~l--Sd~r~~~Fge~yGv~I~egp-L--~gLlA-RaV~V~De~g~V~y~e 147 (158)
T COG2077 90 QKRFCGAE-GIENVITL--SDFRDRAFGENYGVLINEGP-L--AGLLA-RAVFVLDENGKVTYSE 147 (158)
T ss_pred Hhhhhhhc-CcccceEh--hhhhhhhhhHhhCEEecccc-c--cCeee-eEEEEEcCCCcEEEEE
Confidence 99999876 654 4344 33333333333333211110 0 01111 5679999999999864
No 98
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.19 E-value=2.8e-10 Score=78.49 Aligned_cols=88 Identities=10% Similarity=0.094 Sum_probs=69.0
Q ss_pred CcEEEEEEeccCCCC--CH--HhHHHHHHHHHHhc-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeecc
Q 028736 66 GKVLLVVNVASKCGL--TQ--SNYKELNVLYEKYK-NQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKID 140 (204)
Q Consensus 66 gk~~lv~f~~t~C~~--C~--~~~~~l~~l~~~~~-~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 140 (204)
..++|++||++||++ |+ ...|.+.++.+++- +.++.++-|++|. .++ .+ ++
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~-------~~~----La-~~------------ 82 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK-------DAK----VA-KK------------ 82 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC-------CHH----HH-HH------------
Confidence 369999999999987 99 77888899888872 3369999998763 221 11 22
Q ss_pred CCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhh
Q 028736 141 VNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 201 (204)
++|..+|+++++ +||+++. +.|..+.+.+.+.|++++
T Consensus 83 ----------------------~~I~~iPTl~lf-k~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 83 ----------------------LGLDEEDSIYVF-KDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ----------------------cCCccccEEEEE-ECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 266777999999 5899887 889889999999999876
No 99
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.19 E-value=1.4e-10 Score=77.10 Aligned_cols=83 Identities=16% Similarity=0.156 Sum_probs=60.8
Q ss_pred CcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCCC
Q 028736 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKN 145 (204)
Q Consensus 66 gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 145 (204)
+++++|.||++||+.|+...+.|.++.+++. ..+.++.|+.+. . .+.. .+
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~-~~i~~~~vd~~~-------~----~~~~-~~----------------- 63 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF-PSVLFLSIEAEE-------L----PEIS-EK----------------- 63 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC-CceEEEEEcccc-------C----HHHH-Hh-----------------
Confidence 6999999999999999999999999999973 358888876431 1 1111 21
Q ss_pred chhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHH
Q 028736 146 AAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 197 (204)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l 197 (204)
+++..+|++++++ +|+++.+..|. +++.+.+.|
T Consensus 64 -----------------~~i~~~Pt~~~~~-~g~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 64 -----------------FEITAVPTFVFFR-NGTIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred -----------------cCCccccEEEEEE-CCEEEEEEeCC-CHHHHHHhh
Confidence 1455569988884 89999988885 455555543
No 100
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.17 E-value=1.4e-10 Score=78.12 Aligned_cols=87 Identities=17% Similarity=0.110 Sum_probs=65.2
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcC-CCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKN-QDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNG 143 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~-~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 143 (204)
.+++++|.||++||+.|+...+.+.++.+.++. .++.++.++++. . ..+.+ .+
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-------~---~~~~~-~~--------------- 70 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE-------A---NKDLA-KK--------------- 70 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC-------c---chhhH-Hh---------------
Confidence 357999999999999999999999999999984 358888887652 0 11111 11
Q ss_pred CCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHH
Q 028736 144 KNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKD 196 (204)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~ 196 (204)
.+|..+|++++++++|+....+.|..+.+.+.+.
T Consensus 71 -------------------~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 104 (105)
T cd02998 71 -------------------YGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKF 104 (105)
T ss_pred -------------------CCCCCcCEEEEEeCCCCCccccCCccCHHHHHhh
Confidence 1556669999999887777788887777766543
No 101
>PTZ00051 thioredoxin; Provisional
Probab=99.16 E-value=2.9e-10 Score=75.78 Aligned_cols=80 Identities=18% Similarity=0.178 Sum_probs=59.3
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
.+++++|.||++||++|+...+.+.++.+++.+ +.++.|+.+. . ...+ ++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~--------~---~~~~-~~---------------- 66 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDVDE--------L---SEVA-EK---------------- 66 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEECcc--------h---HHHH-HH----------------
Confidence 468999999999999999999999999998763 7788886541 1 1122 22
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHH
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIE 194 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~ 194 (204)
.++..+|+++++ ++|+++.++.|. .++++.
T Consensus 67 ------------------~~v~~~Pt~~~~-~~g~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 67 ------------------ENITSMPTFKVF-KNGSVVDTLLGA-NDEALK 96 (98)
T ss_pred ------------------CCCceeeEEEEE-eCCeEEEEEeCC-CHHHhh
Confidence 155666986666 799999999885 444443
No 102
>PTZ00102 disulphide isomerase; Provisional
Probab=99.15 E-value=3.2e-10 Score=96.31 Aligned_cols=104 Identities=18% Similarity=0.137 Sum_probs=73.0
Q ss_pred EecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCC--CeEEEEEeCCCCCCCCCCCHHHHHHHHHhh
Q 028736 51 VKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ--DFEVLAFPCNQFAGQEPGSNEEIQEVACTM 128 (204)
Q Consensus 51 l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~--~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~ 128 (204)
+.+.+...+.-.-.++++++|.||++||++|+...|.+.++.+.+.+. ++.+..|.++. .. +.+ ++
T Consensus 34 v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~-------~~----~l~-~~ 101 (477)
T PTZ00102 34 VTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE-------EM----ELA-QE 101 (477)
T ss_pred cEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC-------CH----HHH-Hh
Confidence 334444433322235689999999999999999999999999888654 47777776542 11 112 22
Q ss_pred cCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhhh
Q 028736 129 FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLG 202 (204)
Q Consensus 129 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 202 (204)
.+|..+|++++++.++ .+ .+.|..+.+.+.+.+++++.
T Consensus 102 ----------------------------------~~i~~~Pt~~~~~~g~-~~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 102 ----------------------------------FGVRGYPTIKFFNKGN-PV-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred ----------------------------------cCCCcccEEEEEECCc-eE-EecCCCCHHHHHHHHHHhhC
Confidence 1455569999997654 44 77888889999999988764
No 103
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.14 E-value=3e-10 Score=75.49 Aligned_cols=86 Identities=17% Similarity=0.143 Sum_probs=65.0
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhc-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYK-NQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNG 143 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~-~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 143 (204)
++++++|.||++||+.|+...+.+.++.+.+. ..++.++.|+++. ..+.. ++
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~-~~--------------- 66 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-----------NNDLC-SE--------------- 66 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-----------hHHHH-Hh---------------
Confidence 45699999999999999999999999999985 3468888887541 11122 22
Q ss_pred CCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHH
Q 028736 144 KNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKD 196 (204)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~ 196 (204)
.+|..+|++++++++|+...++.|..+.+.+.+.
T Consensus 67 -------------------~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 67 -------------------YGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEF 100 (101)
T ss_pred -------------------CCCCCCCEEEEEcCCCcccccCCCCcCHHHHHhh
Confidence 1555569999999887787888887777766553
No 104
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.13 E-value=8.8e-10 Score=76.57 Aligned_cols=85 Identities=7% Similarity=-0.046 Sum_probs=53.8
Q ss_pred CCCCcEEEEEEeccCCCCCHHhHHH-HH--HHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeec
Q 028736 63 GYRGKVLLVVNVASKCGLTQSNYKE-LN--VLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKI 139 (204)
Q Consensus 63 ~~~gk~~lv~f~~t~C~~C~~~~~~-l~--~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (204)
.-+||+++|+|+++||+.|+..-.. +. ++.+.+.+ ++.+|-|+.+. .++..+.+. +...
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~-------~~~~~~~~~-~~~~--------- 73 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREE-------RPDVDKIYM-NAAQ--------- 73 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCc-------CcHHHHHHH-HHHH---------
Confidence 3478999999999999999976552 22 34444333 57777776542 233222232 1100
Q ss_pred cCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCC
Q 028736 140 DVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAP 186 (204)
Q Consensus 140 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g 186 (204)
.. +++.+.|+++++|++|++++...+
T Consensus 74 --------~~-------------~~~~G~Pt~vfl~~~G~~~~~~~~ 99 (124)
T cd02955 74 --------AM-------------TGQGGWPLNVFLTPDLKPFFGGTY 99 (124)
T ss_pred --------Hh-------------cCCCCCCEEEEECCCCCEEeeeee
Confidence 00 145556999999999999987644
No 105
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.13 E-value=4.9e-10 Score=75.83 Aligned_cols=43 Identities=9% Similarity=-0.021 Sum_probs=38.2
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
.+|++||.|+++||++|+..-|.+.++.+++++. +.+.-|.+|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVD 55 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVD 55 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEecc
Confidence 5799999999999999999999999999999753 777778765
No 106
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=99.12 E-value=2.5e-10 Score=86.39 Aligned_cols=139 Identities=16% Similarity=0.233 Sum_probs=96.6
Q ss_pred CCCcccceEEecCCCCe-eecCCC-CC-cEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCC---------
Q 028736 42 APKSIYDFTVKDIRGND-VSLSGY-RG-KVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ--------- 109 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~-~~l~~~-~g-k~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~--------- 109 (204)
.|..|||..+.+.+|+. .++.++ +| +|+|++|++-.||+-+..+..++++.++|.+. ..++.|-+..
T Consensus 75 ~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHpsDgW~~ 153 (237)
T PF00837_consen 75 LGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHPSDGWAF 153 (237)
T ss_pred CCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCcCCCccC
Confidence 78999999999999999 999998 45 99999999999999999999999999999984 3344332211
Q ss_pred ----CCCCCCCCHH---HHHHHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccce-eeEEECCCCcEE
Q 028736 110 ----FAGQEPGSNE---EIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNF-TKFLVNKEGKVV 181 (204)
Q Consensus 110 ----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P-~~~lid~~G~i~ 181 (204)
+.-..+.+-+ .+.+.+.++ ...+|++ .|.........|+.. | ++||| .+|+|+
T Consensus 154 ~~~~~~i~qh~sledR~~aA~~l~~~-~~~~pi~--vD~mdN~~~~~YgA~---------------PeRlyIi-~~gkv~ 214 (237)
T PF00837_consen 154 GNNPYEIPQHRSLEDRLRAAKLLKEE-FPQCPIV--VDTMDNNFNKAYGAL---------------PERLYII-QDGKVV 214 (237)
T ss_pred CCCceeecCCCCHHHHHHHHHHHHhh-CCCCCEE--EEccCCHHHHHhCCC---------------cceEEEE-ECCEEE
Confidence 0111122222 333444454 5788888 455554455555432 3 44666 599999
Q ss_pred Eec-CCCC--ChhHHHHHHHHh
Q 028736 182 ERY-APTT--SPLKIEKDIQNL 200 (204)
Q Consensus 182 ~~~-~g~~--~~~~~~~~l~~l 200 (204)
+.. .|+. +++++++.|++.
T Consensus 215 Y~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 215 YKGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred EeCCCCCCcCCHHHHHHHHHhc
Confidence 985 3433 677888888764
No 107
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=2.9e-10 Score=81.37 Aligned_cols=153 Identities=16% Similarity=0.249 Sum_probs=100.6
Q ss_pred CCCcccceEEecCCCCeeecCCCCC-cEEEE-EEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRG-KVLLV-VNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNE 119 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~g-k~~lv-~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~ 119 (204)
.|+.+|||+.-+..| .+++-++.| .|.++ .-.+...|.|..|+..+.+++.+|.++++..|+.|+|...+.+ +=.+
T Consensus 8 lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~-~Wi~ 85 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHK-DWIK 85 (224)
T ss_pred ccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHH-HHHH
Confidence 789999999988777 789999877 55554 4557889999999999999999999999999999998532221 1122
Q ss_pred HHHHHHHhhc-CccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCC----ChhHHH
Q 028736 120 EIQEVACTMF-KAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT----SPLKIE 194 (204)
Q Consensus 120 ~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~----~~~~~~ 194 (204)
+++.|..... ..+||++ .|.+.+.+ -+++.+........|.+ .....+|+|||+.+|+-....+. +.+++.
T Consensus 86 DIks~~~~~~~~~~yPII--aD~~rela-~~l~MlD~~e~~~~~~~-~T~Ravfvi~pdkKirLs~lYP~ttGRN~dEiL 161 (224)
T KOG0854|consen 86 DIKSYAKVKNHSVPYPII--ADPNRELA-FLLNMLDPEEKKNIGDG-KTVRAVFVIDPDKKIRLSFLYPSTTGRNFDEIL 161 (224)
T ss_pred HHHHHHhccCCCCCCCee--cCCchhhh-hhhcccCHhHcCCCCCC-ceEEEEEEECCCceEEEEEEcccccCcCHHHHH
Confidence 3333333221 2678888 55555443 33344433332222222 22367899999999998754433 334555
Q ss_pred HHHHHh
Q 028736 195 KDIQNL 200 (204)
Q Consensus 195 ~~l~~l 200 (204)
..|..|
T Consensus 162 RvidsL 167 (224)
T KOG0854|consen 162 RVIDSL 167 (224)
T ss_pred HHHHHH
Confidence 555554
No 108
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.11 E-value=8.3e-10 Score=74.13 Aligned_cols=85 Identities=16% Similarity=0.080 Sum_probs=62.6
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
.+++++|.||++||++|+...+.+.++.+++.. .+.++.++++. .. +.+ ++
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~--------~~---~~~-~~---------------- 67 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADV--------HQ---SLA-QQ---------------- 67 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcc--------hH---HHH-HH----------------
Confidence 357899999999999999999999999999876 38888887642 11 111 22
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHH
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKD 196 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~ 196 (204)
.+|..+|++++++++.+....+.|..+.+.+.+.
T Consensus 68 ------------------~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 101 (103)
T cd03001 68 ------------------YGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSA 101 (103)
T ss_pred ------------------CCCCccCEEEEECCCCcceeecCCCCCHHHHHHH
Confidence 1455569999997654666678888787776654
No 109
>PTZ00102 disulphide isomerase; Provisional
Probab=99.08 E-value=5.1e-10 Score=95.06 Aligned_cols=107 Identities=18% Similarity=0.078 Sum_probs=78.8
Q ss_pred EEecCCCCeeecC-CCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCC-CeEEEEEeCCCCCCCCCCCHHHHHHHHHh
Q 028736 50 TVKDIRGNDVSLS-GYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ-DFEVLAFPCNQFAGQEPGSNEEIQEVACT 127 (204)
Q Consensus 50 ~l~~~~g~~~~l~-~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~-~~~~i~v~~d~~~~~~~~~~~~~~~~~~~ 127 (204)
.+..++|..+.-. .-.||+++|+||++||++|+...|.++++.+.+++. .+.+..|+++. .... + .
T Consensus 358 ~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~-------~~~~----~-~ 425 (477)
T PTZ00102 358 PVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA-------NETP----L-E 425 (477)
T ss_pred CeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC-------Cccc----h-h
Confidence 3555566665533 235799999999999999999999999999998764 46666676542 0000 0 0
Q ss_pred hcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhhh
Q 028736 128 MFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLG 202 (204)
Q Consensus 128 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 202 (204)
+ .++..+|++++++++|++...+.|..+.+.+.+.|++...
T Consensus 426 ~----------------------------------~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 426 E----------------------------------FSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred c----------------------------------CCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence 0 1455669999999888876788999999999999988764
No 110
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.08 E-value=2.3e-09 Score=73.55 Aligned_cols=88 Identities=15% Similarity=0.214 Sum_probs=63.8
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
+++.++|+||++||++|+...+.++++.+.+. .+.+..|+.|. .++ .. ++
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~--~i~~~~vd~d~-------~~~----l~-~~---------------- 70 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELSD--KLKLEIYDFDE-------DKE----KA-EK---------------- 70 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhcC--ceEEEEEeCCc-------CHH----HH-HH----------------
Confidence 34678899999999999999999999998863 37888887652 221 11 22
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCC---CcEEEecCCCCChhHHHHHHHHhhh
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKE---GKVVERYAPTTSPLKIEKDIQNLLG 202 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~---G~i~~~~~g~~~~~~~~~~l~~ll~ 202 (204)
++|.++|++++++.+ |.+ ++.|..+.+++.+.|+.+++
T Consensus 71 ------------------~~v~~vPt~~i~~~g~~~~~~--~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 71 ------------------YGVERVPTTIFLQDGGKDGGI--RYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred ------------------cCCCcCCEEEEEeCCeecceE--EEEecCchHHHHHHHHHHHh
Confidence 266777999998753 333 45566677789999888875
No 111
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.07 E-value=2.4e-09 Score=68.84 Aligned_cols=81 Identities=10% Similarity=0.121 Sum_probs=59.0
Q ss_pred EEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCCCchh
Q 028736 69 LLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAP 148 (204)
Q Consensus 69 ~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 148 (204)
.+..||++|||+|+...+.++++.++++.. +.++.|+.+. +++.. ++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~~~-------~~~~~-----~~-------------------- 48 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINVME-------NPQKA-----ME-------------------- 48 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeCcc-------CHHHH-----HH--------------------
Confidence 467899999999999999999999998754 8888887652 22211 11
Q ss_pred HHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhh
Q 028736 149 IYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 149 ~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 201 (204)
+++..+|++++ +|+. ++.|..+.+++.+.|+++|
T Consensus 49 --------------~~v~~vPt~~~---~g~~--~~~G~~~~~~l~~~l~~~~ 82 (82)
T TIGR00411 49 --------------YGIMAVPAIVI---NGDV--EFIGAPTKEELVEAIKKRL 82 (82)
T ss_pred --------------cCCccCCEEEE---CCEE--EEecCCCHHHHHHHHHhhC
Confidence 15556699765 6764 5667778888888887764
No 112
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.07 E-value=1.9e-09 Score=73.02 Aligned_cols=83 Identities=11% Similarity=0.051 Sum_probs=65.2
Q ss_pred CCCcEEEEEEeccC--CCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccC
Q 028736 64 YRGKVLLVVNVASK--CGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDV 141 (204)
Q Consensus 64 ~~gk~~lv~f~~t~--C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 141 (204)
-.|.+++|.|+++| ||+|....|.|.++.+++.+. +.++-|++|. .+ ++ . .+
T Consensus 25 ~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~-------~~-~l---a-~~------------- 78 (111)
T cd02965 25 AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD-------EQ-AL---A-AR------------- 78 (111)
T ss_pred hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC-------CH-HH---H-HH-------------
Confidence 36689999999997 999999999999999999865 7888888763 22 11 1 22
Q ss_pred CCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHH
Q 028736 142 NGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIE 194 (204)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~ 194 (204)
++|..+|+++++ ++|+++....|..+.+++.
T Consensus 79 ---------------------f~V~sIPTli~f-kdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 79 ---------------------FGVLRTPALLFF-RDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred ---------------------cCCCcCCEEEEE-ECCEEEEEEeCccCHHHHh
Confidence 266777998888 6899999999987766653
No 113
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.06 E-value=9.9e-10 Score=75.46 Aligned_cols=43 Identities=23% Similarity=0.214 Sum_probs=36.5
Q ss_pred CcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCC--CeEEEEEeCC
Q 028736 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ--DFEVLAFPCN 108 (204)
Q Consensus 66 gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~--~~~~i~v~~d 108 (204)
+++++|.||++||++|+...+.+.++.+++++. .+.+..|+++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~ 63 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA 63 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc
Confidence 379999999999999999999999999998753 3777777654
No 114
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.05 E-value=1.6e-09 Score=74.26 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=61.2
Q ss_pred CcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCCC
Q 028736 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKN 145 (204)
Q Consensus 66 gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 145 (204)
+++++|.||++||++|+...+.++++.+++.. +.++.|+.+. . ... ++
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~~--------~----~l~-~~----------------- 71 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAEK--------A----FLV-NY----------------- 71 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEchh--------h----HHH-Hh-----------------
Confidence 58999999999999999999999999999864 7788876531 1 222 22
Q ss_pred chhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCC---hhHHHHHHHHhh
Q 028736 146 AAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTS---PLKIEKDIQNLL 201 (204)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~---~~~~~~~l~~ll 201 (204)
.+|..+|+++++ ++|+.+.+..|..+ .+-..+.|+++|
T Consensus 72 -----------------~~i~~~Pt~~~f-~~G~~v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 72 -----------------LDIKVLPTLLVY-KNGELIDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred -----------------cCCCcCCEEEEE-ECCEEEEEEecHHHhCCCCCCHHHHHHHh
Confidence 256667988888 68999998766331 223445555443
No 115
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.03 E-value=1.9e-09 Score=72.38 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=38.6
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcC-CCeEEEEEeCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKN-QDFEVLAFPCN 108 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~-~~~~~i~v~~d 108 (204)
.+++++|.||++||++|+...+.+.++.+.+++ ..+.+..|+++
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 358999999999999999999999999999987 35888888754
No 116
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.00 E-value=3.5e-09 Score=88.57 Aligned_cols=93 Identities=19% Similarity=0.113 Sum_probs=66.8
Q ss_pred CCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCC
Q 028736 64 YRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNG 143 (204)
Q Consensus 64 ~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 143 (204)
.+++++||+||++||++|+...|.+.++.++++..++.++.|++|. ... ..+.++
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~-------~~~---~~~~~~--------------- 423 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADG-------DQK---EFAKQE--------------- 423 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCC-------Ccc---HHHHHH---------------
Confidence 3679999999999999999999999999999987778899998763 111 112122
Q ss_pred CCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecC-CCCChhHHHHHHHHh
Q 028736 144 KNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYA-PTTSPLKIEKDIQNL 200 (204)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~-g~~~~~~~~~~l~~l 200 (204)
++|..+|+++++.+++.-...|. |.-+.+.+...++.+
T Consensus 424 -------------------~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 424 -------------------LQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred -------------------cCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 15556699998865543233454 456777777777654
No 117
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.99 E-value=5.7e-09 Score=67.96 Aligned_cols=82 Identities=20% Similarity=0.202 Sum_probs=61.0
Q ss_pred cEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCCCc
Q 028736 67 KVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNA 146 (204)
Q Consensus 67 k~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 146 (204)
++++|.||++||+.|....+.++++.+. ..++.++.|+++. ..+ .. ..
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~-------~~~----~~-~~------------------ 58 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE-------NPE----LA-EE------------------ 58 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC-------Chh----HH-Hh------------------
Confidence 8999999999999999999999999988 3358888887652 111 11 11
Q ss_pred hhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHH
Q 028736 147 APIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 197 (204)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l 197 (204)
.++..+|++++++ +|+++..+.|..+.+.+.+.|
T Consensus 59 ----------------~~v~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 59 ----------------YGVRSIPTFLFFK-NGKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred ----------------cCcccccEEEEEE-CCEEEEEEecCCCHHHHHHHh
Confidence 1455569988884 688888888877766666554
No 118
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.98 E-value=1.1e-08 Score=70.32 Aligned_cols=96 Identities=16% Similarity=0.130 Sum_probs=65.5
Q ss_pred CCCCCcEEEEEEeccCCCCCHHhHHHH---HHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceee
Q 028736 62 SGYRGKVLLVVNVASKCGLTQSNYKEL---NVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDK 138 (204)
Q Consensus 62 ~~~~gk~~lv~f~~t~C~~C~~~~~~l---~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (204)
+.-++|+++|+|.++||+.|......+ .++.+.+.+ ++.++.+.++ + .+..++. ..
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~--------~-~e~~~~~-~~---------- 71 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDID--------S-SEGQRFL-QS---------- 71 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCC--------C-ccHHHHH-HH----------
Confidence 344689999999999999999755432 123333332 3555555433 1 1222332 11
Q ss_pred ccCCCCCchhHHHHHHhhcCCccccccccceeeEEECC-CCcEEEecCCCCChhHHHHHHHHhhh
Q 028736 139 IDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNK-EGKVVERYAPTTSPLKIEKDIQNLLG 202 (204)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~ll~ 202 (204)
+++..+|++++||+ +|+++.+..|..+++++.+.|++...
T Consensus 72 ------------------------~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 72 ------------------------YKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred ------------------------hCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 13445699999999 89999999999999999999988764
No 119
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.97 E-value=7.6e-09 Score=70.93 Aligned_cols=42 Identities=10% Similarity=0.003 Sum_probs=37.4
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
++++++|+||++||++|+...+.+.++.+++.+ +.++.|+.+
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~ 62 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAE 62 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcc
Confidence 458999999999999999999999999999864 788888765
No 120
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.96 E-value=4.9e-09 Score=77.37 Aligned_cols=41 Identities=10% Similarity=0.016 Sum_probs=36.6
Q ss_pred CcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 66 gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
++++||.||++||++|+...+.|.++.+++.. +.++-|+.+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~--vkF~kVd~d 123 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA--VKFCKIRAS 123 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC--eEEEEEecc
Confidence 46999999999999999999999999999863 888888754
No 121
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.92 E-value=4e-09 Score=72.60 Aligned_cols=45 Identities=11% Similarity=0.075 Sum_probs=39.9
Q ss_pred CCCcEEEEEEec-------cCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 028736 64 YRGKVLLVVNVA-------SKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 109 (204)
Q Consensus 64 ~~gk~~lv~f~~-------t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~ 109 (204)
.+|++++|.||| +|||+|+...|.+.++.++++. ++.++.|+++.
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~ 70 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGD 70 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCC
Confidence 367999999999 9999999999999999999884 48889998763
No 122
>PLN02309 5'-adenylylsulfate reductase
Probab=98.90 E-value=1.4e-08 Score=84.97 Aligned_cols=92 Identities=21% Similarity=0.152 Sum_probs=67.2
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
+++++||+||++||++|+...+.+.++.+++...++.+..|++|. .. +....++
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~-------~~---~~la~~~---------------- 417 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG-------DQ---KEFAKQE---------------- 417 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC-------cc---hHHHHhh----------------
Confidence 679999999999999999999999999999987789999998762 11 1122111
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecC-CCCChhHHHHHHHHh
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYA-PTTSPLKIEKDIQNL 200 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~-g~~~~~~~~~~l~~l 200 (204)
.+|..+|+++++.++.+-...|. +.-+.+.+...++++
T Consensus 418 ------------------~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 418 ------------------LQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred ------------------CCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 15566699999965543333454 356778888887765
No 123
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.90 E-value=1.3e-08 Score=76.15 Aligned_cols=41 Identities=12% Similarity=0.100 Sum_probs=36.7
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPC 107 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~ 107 (204)
++++|||.||++||++|+...+.|.++.++|.. +.++-|+.
T Consensus 101 ~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~a 141 (192)
T cd02988 101 KDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIIS 141 (192)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEh
Confidence 357999999999999999999999999999974 88888874
No 124
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.88 E-value=1.2e-08 Score=86.14 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=69.5
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCC--eEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQD--FEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVN 142 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~--~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 142 (204)
++++++|.||++||++|+...+.+.++.+.+.+.+ +.++.|+++. .. +.+ ++
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------~~----~l~-~~-------------- 70 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-------EK----DLA-QK-------------- 70 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC-------cH----HHH-Hh--------------
Confidence 56899999999999999999999999999887654 8888887652 11 112 22
Q ss_pred CCCchhHHHHHHhhcCCccccccccceeeEEECCCCcE-EEecCCCCChhHHHHHHHHhhh
Q 028736 143 GKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKV-VERYAPTTSPLKIEKDIQNLLG 202 (204)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i-~~~~~g~~~~~~~~~~l~~ll~ 202 (204)
.+|..+|+++++ ++|+. +..+.|..+.+.+.+.+++++.
T Consensus 71 --------------------~~i~~~Pt~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 71 --------------------YGVSGYPTLKIF-RNGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred --------------------CCCccccEEEEE-eCCccceeEecCCCCHHHHHHHHHHhcC
Confidence 155556988888 46776 6778888888888888887754
No 125
>PTZ00062 glutaredoxin; Provisional
Probab=98.86 E-value=2.3e-08 Score=75.24 Aligned_cols=77 Identities=12% Similarity=-0.001 Sum_probs=61.2
Q ss_pred cEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCCCc
Q 028736 67 KVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNA 146 (204)
Q Consensus 67 k~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 146 (204)
..+|++||++|||+|+...+.|.++.+++.+ +.++.|+. + |
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~--------d----------------~------------- 58 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNL--------A----------------D------------- 58 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEcc--------c----------------c-------------
Confidence 5689999999999999999999999999964 88888851 1 1
Q ss_pred hhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhh
Q 028736 147 APIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 201 (204)
+|..+|+++++ ++|+.+.+..|. ++.++...+++..
T Consensus 59 -----------------~V~~vPtfv~~-~~g~~i~r~~G~-~~~~~~~~~~~~~ 94 (204)
T PTZ00062 59 -----------------ANNEYGVFEFY-QNSQLINSLEGC-NTSTLVSFIRGWA 94 (204)
T ss_pred -----------------CcccceEEEEE-ECCEEEeeeeCC-CHHHHHHHHHHHc
Confidence 55666998888 689999998875 4666666666543
No 126
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.85 E-value=1.3e-08 Score=77.50 Aligned_cols=102 Identities=24% Similarity=0.194 Sum_probs=74.4
Q ss_pred eeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCcccccee
Q 028736 58 DVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFD 137 (204)
Q Consensus 58 ~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (204)
.-.+.+..+++-|++|+.+.|+.|....|.|+.+.++++ +.++.||+|.- ....||...
T Consensus 112 ~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg---~~v~~vs~DG~------------------~~~~fp~~~ 170 (215)
T PF13728_consen 112 DKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG---FSVIPVSLDGR------------------PIPSFPNPR 170 (215)
T ss_pred HHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC---CEEEEEecCCC------------------CCcCCCCCC
Confidence 344566678999999999999999999999999999984 99999998841 012233221
Q ss_pred eccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCC-cEEEecCCCCChhHHHHHH
Q 028736 138 KIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEG-KVVERYAPTTSPLKIEKDI 197 (204)
Q Consensus 138 ~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G-~i~~~~~g~~~~~~~~~~l 197 (204)
.+...+..+ +|..+|++||+++++ ++.-...|.++.+++.+.|
T Consensus 171 ---~~~g~~~~l--------------~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 171 ---PDPGQAKRL--------------GVKVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred ---CCHHHHHHc--------------CCCcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 111111111 677889999999988 6766788888888887654
No 127
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.85 E-value=2.5e-08 Score=63.35 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=30.4
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEe
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~ 106 (204)
.|.||++|||+|....+.++++.++++.. +.++-|+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v~ 37 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID-AEFEKVT 37 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC-eEEEEeC
Confidence 37899999999999999999999998753 7776663
No 128
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.80 E-value=2.9e-08 Score=77.01 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=78.3
Q ss_pred ecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeec
Q 028736 60 SLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKI 139 (204)
Q Consensus 60 ~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (204)
.+.+..+++-|++|+.+.||.|....|.++.+.++|+ +.++.||+|. .....||...
T Consensus 144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg---i~v~~VS~DG------------------~~~p~fp~~~-- 200 (256)
T TIGR02739 144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG---ISVIPISVDG------------------TLIPGLPNSR-- 200 (256)
T ss_pred HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCC------------------CCCCCCCCcc--
Confidence 3455567899999999999999999999999999876 9999999984 1122344331
Q ss_pred cCCCCCchhHHHHHHhhcCCccccccccceeeEEECCC-CcEEEecCCCCChhHHHHHHHHhhh
Q 028736 140 DVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKE-GKVVERYAPTTSPLKIEKDIQNLLG 202 (204)
Q Consensus 140 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~-G~i~~~~~g~~~~~~~~~~l~~ll~ 202 (204)
.+...+.++ ++..+|++||++++ +++.-...|.++.+++.+.+..++.
T Consensus 201 -~d~gqa~~l--------------~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 201 -SDSGQAQHL--------------GVKYFPALYLVNPKSQKMSPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred -CChHHHHhc--------------CCccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence 111111121 67778999999999 6676678899999999988877653
No 129
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.78 E-value=1.1e-08 Score=71.27 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.2
Q ss_pred CCCcEEEEEEeccCCCCCHHhHHHH
Q 028736 64 YRGKVLLVVNVASKCGLTQSNYKEL 88 (204)
Q Consensus 64 ~~gk~~lv~f~~t~C~~C~~~~~~l 88 (204)
-+||+++|+|.++||++|+..-..+
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 4789999999999999999665543
No 130
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=5.6e-08 Score=73.64 Aligned_cols=91 Identities=20% Similarity=0.245 Sum_probs=69.3
Q ss_pred cCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeecc
Q 028736 61 LSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKID 140 (204)
Q Consensus 61 l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 140 (204)
++.--+|.++|.|.++||++|++-.|.+.++..+|.. ..++-|.+|. -+.....
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVdVd~-----------c~~taa~------------- 69 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVDVDE-----------CRGTAAT------------- 69 (288)
T ss_pred hhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEeHHH-----------hhchhhh-------------
Confidence 4444569999999999999999999999999999974 7777776541 1111111
Q ss_pred CCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhh
Q 028736 141 VNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 201 (204)
++|+++|+++++ .+|+-+....|. ++..+++.+++.+
T Consensus 70 ----------------------~gV~amPTFiff-~ng~kid~~qGA-d~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 70 ----------------------NGVNAMPTFIFF-RNGVKIDQIQGA-DASGLEEKVAKYA 106 (288)
T ss_pred ----------------------cCcccCceEEEE-ecCeEeeeecCC-CHHHHHHHHHHHh
Confidence 388889997777 688888888774 6667888777765
No 131
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.74 E-value=5.2e-08 Score=75.17 Aligned_cols=104 Identities=12% Similarity=0.083 Sum_probs=77.7
Q ss_pred cCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeecc
Q 028736 61 LSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKID 140 (204)
Q Consensus 61 l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 140 (204)
+.++.+++-|++|+.+.||+|....|.|+.+.++++ +.++.||+|.- ....||...
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg---~~v~~VS~DG~------------------~~p~fp~~~--- 193 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG---LSVIPVSVDGV------------------INPLLPDSR--- 193 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCC------------------CCCCCCCCc---
Confidence 444567899999999999999999999999999876 89999999851 122343331
Q ss_pred CCCCCchhHHHHHHhhcCCccccccccceeeEEECCCC-cEEEecCCCCChhHHHHHHHHhhh
Q 028736 141 VNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEG-KVVERYAPTTSPLKIEKDIQNLLG 202 (204)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G-~i~~~~~g~~~~~~~~~~l~~ll~ 202 (204)
.+...+.+ -+|..+|++||++++. ++.-...|.++.+++.+.+..++.
T Consensus 194 ~d~gqa~~--------------l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 194 TDQGQAQR--------------LGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred cChhHHHh--------------cCCcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence 11111111 1677889999999985 777788999999999988877653
No 132
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.74 E-value=1.2e-07 Score=63.59 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=38.4
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
.|+++++.|+++||++|....+.+.++.++++++ +.++.|+.+
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~ 53 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDAD 53 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchH
Confidence 3789999999999999999999999999999864 888888643
No 133
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.71 E-value=9.3e-08 Score=80.77 Aligned_cols=90 Identities=21% Similarity=0.148 Sum_probs=68.3
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcC-C-CeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKN-Q-DFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVN 142 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~-~-~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 142 (204)
.++.++|+||++||++|+...|.++++.+.++. . .+.+..|+++. + + ...+
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~-------n---------~--~~~~--------- 415 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATA-------N---------D--VPPF--------- 415 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCC-------C---------c--cCCC---------
Confidence 579999999999999999999999999999987 3 68888887652 0 0 0000
Q ss_pred CCCchhHHHHHHhhcCCccccccccceeeEEECCCCcE-EEecCCCCChhHHHHHHHHhhh
Q 028736 143 GKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKV-VERYAPTTSPLKIEKDIQNLLG 202 (204)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i-~~~~~g~~~~~~~~~~l~~ll~ 202 (204)
++..+|+++++.++++. ...+.|..+.+.+.+.|++..+
T Consensus 416 ---------------------~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 416 ---------------------EVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred ---------------------CccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCC
Confidence 44456999999766652 3467777788888888877654
No 134
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.65 E-value=2.9e-07 Score=70.32 Aligned_cols=91 Identities=19% Similarity=0.253 Sum_probs=61.7
Q ss_pred CCCcEEEEEEec---cCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeecc
Q 028736 64 YRGKVLLVVNVA---SKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKID 140 (204)
Q Consensus 64 ~~gk~~lv~f~~---t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 140 (204)
.++...++.|.+ +||++|+...|.++++.+++.. +.+..+.+|. ++.+ +.. ++
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~-----~~~~----~l~-~~------------ 72 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDT-----PEDK----EEA-EK------------ 72 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCC-----cccH----HHH-HH------------
Confidence 344455666777 9999999999999999999853 4555555442 0111 111 22
Q ss_pred CCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEE-EecCCCCChhHHHHHHHHhh
Q 028736 141 VNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVV-ERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~-~~~~g~~~~~~~~~~l~~ll 201 (204)
++|..+|++++++ +|+.+ .++.|..+.+++.+.|+.++
T Consensus 73 ----------------------~~V~~~Pt~~~f~-~g~~~~~~~~G~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 73 ----------------------YGVERVPTTIILE-EGKDGGIRYTGIPAGYEFAALIEDIV 111 (215)
T ss_pred ----------------------cCCCccCEEEEEe-CCeeeEEEEeecCCHHHHHHHHHHHH
Confidence 2666679988886 57776 47888777778888877764
No 135
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.55 E-value=3.7e-07 Score=77.28 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=71.8
Q ss_pred CCCCCcEEEEEEeccCCCCCHHhHHHH-HHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeecc
Q 028736 62 SGYRGKVLLVVNVASKCGLTQSNYKEL-NVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKID 140 (204)
Q Consensus 62 ~~~~gk~~lv~f~~t~C~~C~~~~~~l-~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 140 (204)
++-++|||+++|+|+||-.|+..-+.. .+.+...+-.+++.+-+.+.. +.++..+.++ ++
T Consensus 470 a~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~-------~~p~~~~lLk-~~----------- 530 (569)
T COG4232 470 AEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTA-------NDPAITALLK-RL----------- 530 (569)
T ss_pred HhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecC-------CCHHHHHHHH-Hc-----------
Confidence 334667999999999999999655533 355555555678888887764 4556666663 31
Q ss_pred CCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHh
Q 028736 141 VNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNL 200 (204)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 200 (204)
++-..|++++++++|+-.....|.++.+.+.+.+++.
T Consensus 531 -----------------------~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 531 -----------------------GVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred -----------------------CCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 3334499999999998777788889999999999875
No 136
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.55 E-value=2.8e-08 Score=69.55 Aligned_cols=90 Identities=20% Similarity=0.258 Sum_probs=48.7
Q ss_pred cCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeecc
Q 028736 61 LSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKID 140 (204)
Q Consensus 61 l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 140 (204)
++....+..++.|..+|||+|...+|.|.++.+.... +.+=-+..| +-.+.+ +++.
T Consensus 36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~--i~~~~i~rd-----------~~~el~-~~~l---------- 91 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPN--IEVRIILRD-----------ENKELM-DQYL---------- 91 (129)
T ss_dssp HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT--EEEEEE-HH-----------HHHHHT-TTTT----------
T ss_pred HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC--CeEEEEEec-----------CChhHH-HHHH----------
Confidence 3445667899999999999999999999999998653 444444322 112222 2110
Q ss_pred CCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHH
Q 028736 141 VNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 197 (204)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l 197 (204)
. .+...+|+++++|.+|+.+.++... |+.+.+.+
T Consensus 92 -t--------------------~g~~~IP~~I~~d~~~~~lg~wger--P~~~~~~~ 125 (129)
T PF14595_consen 92 -T--------------------NGGRSIPTFIFLDKDGKELGRWGER--PKEVQELV 125 (129)
T ss_dssp -T---------------------SS--SSEEEEE-TT--EEEEEESS---HHHH---
T ss_pred -h--------------------CCCeecCEEEEEcCCCCEeEEEcCC--CHHHhhcc
Confidence 0 1445569999999999999988665 44444433
No 137
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.52 E-value=1.1e-06 Score=67.15 Aligned_cols=83 Identities=8% Similarity=-0.058 Sum_probs=54.4
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
.+..+++.||++|||+|+...+.++++..+.. .+.+.-|..+. .++.. ++
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~~-------~~~~~-----~~---------------- 181 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEANE-------NPDLA-----EK---------------- 181 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCCC-------CHHHH-----HH----------------
Confidence 44556666999999999999888888887743 36666665431 22211 22
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHH
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQN 199 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ 199 (204)
++|..+|++++. .+|+. +.|..+.+++.+.|++
T Consensus 182 ------------------~~V~~vPtl~i~-~~~~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 182 ------------------YGVMSVPKIVIN-KGVEE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred ------------------hCCccCCEEEEe-cCCEE---EECCCCHHHHHHHHHh
Confidence 156666997765 56753 5676677777777764
No 138
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4.4e-07 Score=76.03 Aligned_cols=89 Identities=17% Similarity=0.181 Sum_probs=68.7
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCC--CeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ--DFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVN 142 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~--~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 142 (204)
....++|.|+|+||.+|+...|...+....+++. .+.+.-|... +. ...+ .+
T Consensus 41 ~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat----------~~-~~~~-~~-------------- 94 (493)
T KOG0190|consen 41 GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT----------EE-SDLA-SK-------------- 94 (493)
T ss_pred cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc----------hh-hhhH-hh--------------
Confidence 4479999999999999999999999999999987 5677767432 22 3333 22
Q ss_pred CCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHh
Q 028736 143 GKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNL 200 (204)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 200 (204)
+.|+..|++-+. +||+....|.|+-+.+.+...|++.
T Consensus 95 --------------------y~v~gyPTlkiF-rnG~~~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 95 --------------------YEVRGYPTLKIF-RNGRSAQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred --------------------hcCCCCCeEEEE-ecCCcceeccCcccHHHHHHHHHhc
Confidence 255566886665 8899877889988888999988764
No 139
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.43 E-value=3e-06 Score=55.45 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=37.1
Q ss_pred cCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 61 LSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 61 l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
+.++++++-+..|+++||++|+...+.++++.+.+.+ +.+.-+..+
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~--i~~~~vd~~ 52 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPN--IEHEMIDGA 52 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC--ceEEEEEhH
Confidence 3456778889999999999999999999999987753 666666543
No 140
>smart00594 UAS UAS domain.
Probab=98.42 E-value=2.1e-06 Score=59.66 Aligned_cols=91 Identities=11% Similarity=0.058 Sum_probs=59.4
Q ss_pred CCCCCcEEEEEEeccCCCCCHHhHHHHHH---HHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceee
Q 028736 62 SGYRGKVLLVVNVASKCGLTQSNYKELNV---LYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDK 138 (204)
Q Consensus 62 ~~~~gk~~lv~f~~t~C~~C~~~~~~l~~---l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (204)
+.-.+|+++|+|.++||++|......+-. +.+-+. +++.++.+.++. .+ ..++. .+
T Consensus 23 Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~-~~fv~~~~dv~~--------~e-g~~l~-~~---------- 81 (122)
T smart00594 23 ASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR-ENFIFWQVDVDT--------SE-GQRVS-QF---------- 81 (122)
T ss_pred HHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH-cCEEEEEecCCC--------hh-HHHHH-Hh----------
Confidence 33467999999999999999976654221 222222 246666665432 11 12222 21
Q ss_pred ccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCC-----cEEEecCCCCChhHHHHHH
Q 028736 139 IDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEG-----KVVERYAPTTSPLKIEKDI 197 (204)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G-----~i~~~~~g~~~~~~~~~~l 197 (204)
+++...|++.++|++| .++.+..|..+++++...|
T Consensus 82 ------------------------~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 82 ------------------------YKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred ------------------------cCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 1445569999999998 5777889999998887765
No 141
>PHA02125 thioredoxin-like protein
Probab=98.36 E-value=4.2e-06 Score=52.90 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=19.2
Q ss_pred EEEEeccCCCCCHHhHHHHHHH
Q 028736 70 LVVNVASKCGLTQSNYKELNVL 91 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l 91 (204)
++.|+++||++|+...+.|.++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~ 23 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV 23 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH
Confidence 7899999999999888888654
No 142
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.33 E-value=7.2e-06 Score=50.45 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=30.5
Q ss_pred EEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 69 LLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 69 ~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
-+..|+++|||+|+...+.++++.+... ++.+.-++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~ 39 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAA 39 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcc
Confidence 3678999999999999999999977643 4777777654
No 143
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.4e-05 Score=55.44 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=69.3
Q ss_pred cCCCCCcEEEEEEeccCCCCCHHhHHHH---HHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCcccccee
Q 028736 61 LSGYRGKVLLVVNVASKCGLTQSNYKEL---NVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFD 137 (204)
Q Consensus 61 l~~~~gk~~lv~f~~t~C~~C~~~~~~l---~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (204)
.....+|+.++.|-...|++|.+.-..+ .++++-+.+ ++.++.+.... +.+. ...
T Consensus 37 si~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~-------skpv--------------~f~ 94 (182)
T COG2143 37 SISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISY-------SKPV--------------LFK 94 (182)
T ss_pred hcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEecc-------Ccce--------------Eee
Confidence 3445779999999999999998544433 345555554 36666665432 1110 000
Q ss_pred eccC-CCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhh
Q 028736 138 KIDV-NGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 138 ~~d~-~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 201 (204)
..+. .......+..- .+++.+|++++.|.+|+-+....|.++++++...++-+.
T Consensus 95 ~g~kee~~s~~ELa~k----------f~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa 149 (182)
T COG2143 95 VGDKEEKMSTEELAQK----------FAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVA 149 (182)
T ss_pred cCceeeeecHHHHHHH----------hccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHH
Confidence 0000 00001122111 378889999999999999999999999999888887654
No 144
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.28 E-value=1.8e-06 Score=58.20 Aligned_cols=50 Identities=34% Similarity=0.391 Sum_probs=41.7
Q ss_pred eeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 58 DVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 58 ~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
.......+++++++.||++|||+|+...+.+.++.+++.. .+.++.++..
T Consensus 24 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 24 PLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred ceehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 3344444589999999999999999999999999999987 5888888763
No 145
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.16 E-value=1.1e-05 Score=47.92 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=32.0
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 109 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~ 109 (204)
++.||++||+.|....+.+.++ +..+.++.++.++++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~ 38 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDE 38 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCC
Confidence 5789999999999999999999 4444579999998774
No 146
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.15 E-value=6.5e-06 Score=52.94 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=31.8
Q ss_pred CCCcEEEEEEeccCCCCCHHhHHHH---HHHHHHhcCCCeEEEEEeCC
Q 028736 64 YRGKVLLVVNVASKCGLTQSNYKEL---NVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 64 ~~gk~~lv~f~~t~C~~C~~~~~~l---~~l~~~~~~~~~~~i~v~~d 108 (204)
-+||+++|+|+++||+.|...-..+ .++.+.+. +++..+.|..+
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~ 61 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVD 61 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETT
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcC
Confidence 3689999999999999999776665 22333334 35777777754
No 147
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.03 E-value=5.8e-05 Score=46.82 Aligned_cols=32 Identities=9% Similarity=0.096 Sum_probs=24.0
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
+..|+++|||+|....+.|.+ .++.+..++++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~ 33 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVE 33 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEecc
Confidence 467899999999987766654 35777777765
No 148
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.97 E-value=2.3e-05 Score=61.42 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=65.5
Q ss_pred CcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCC----CeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccC
Q 028736 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ----DFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDV 141 (204)
Q Consensus 66 gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~----~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 141 (204)
...++|.|+|+||+..+...|.+.+..+.+++. .+.+-.|.+|. ...+.++
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~------------e~~ia~k------------- 67 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDK------------EDDIADK------------- 67 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccch------------hhHHhhh-------------
Confidence 579999999999999999999999988887754 23334454431 1223232
Q ss_pred CCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEE-ecCCCCChhHHHHHHHHhhhc
Q 028736 142 NGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVE-RYAPTTSPLKIEKDIQNLLGS 203 (204)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~-~~~g~~~~~~~~~~l~~ll~~ 203 (204)
+.|..+|++=|+ .+|.+.. .|.|.-+.+.+.+.+++.++.
T Consensus 68 ---------------------y~I~KyPTlKvf-rnG~~~~rEYRg~RsVeaL~efi~kq~s~ 108 (375)
T KOG0912|consen 68 ---------------------YHINKYPTLKVF-RNGEMMKREYRGQRSVEALIEFIEKQLSD 108 (375)
T ss_pred ---------------------hccccCceeeee-eccchhhhhhccchhHHHHHHHHHHHhcc
Confidence 244445777676 6888877 588988889999988887653
No 149
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.96 E-value=6.3e-05 Score=51.66 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=33.2
Q ss_pred ccccceeeEEE---CCCCcEEEecCCCCChhHHHHHHHHhhhc
Q 028736 164 AIKWNFTKFLV---NKEGKVVERYAPTTSPLKIEKDIQNLLGS 203 (204)
Q Consensus 164 ~i~~~P~~~li---d~~G~i~~~~~g~~~~~~~~~~l~~ll~~ 203 (204)
++..+|++.+| +.+.+++.+..|..+++++...|+.++++
T Consensus 73 ~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 73 RERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred CCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 44456999999 66777899999999999999999988754
No 150
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=8.4e-05 Score=61.68 Aligned_cols=90 Identities=17% Similarity=0.118 Sum_probs=63.8
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
.+++.+|.|+++||++|....+.+.++.+.+.+ .+.+..|.++ +.+..+ ++
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~-----------~~~~~~-~~---------------- 96 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCD-----------EHKDLC-EK---------------- 96 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCch-----------hhHHHH-Hh----------------
Confidence 458999999999999999999999999999987 3666666543 222223 22
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhhh
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLG 202 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 202 (204)
++|.+.|+..++.+. .-...+.+..+.+.+.+.+...+.
T Consensus 97 ------------------y~i~gfPtl~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 135 (383)
T KOG0191|consen 97 ------------------YGIQGFPTLKVFRPG-KKPIDYSGPRNAESLAEFLIKELE 135 (383)
T ss_pred ------------------cCCccCcEEEEEcCC-CceeeccCcccHHHHHHHHHHhhc
Confidence 255566888888776 434456666677777777666553
No 151
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=2.4e-05 Score=66.09 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=34.9
Q ss_pred cEEEEEEeccCCCCCHHhHHHHHHHHHHhcC-CC-eEEEEEeCC
Q 028736 67 KVLLVVNVASKCGLTQSNYKELNVLYEKYKN-QD-FEVLAFPCN 108 (204)
Q Consensus 67 k~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~-~~-~~~i~v~~d 108 (204)
+.-+|.|+++||++|+...|.++++.+.... .+ +.|-+|++-
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA 101 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA 101 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc
Confidence 6789999999999999999999999998775 23 566667663
No 152
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=5.4e-05 Score=63.75 Aligned_cols=41 Identities=29% Similarity=0.365 Sum_probs=35.7
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCC-CeEEEEE
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ-DFEVLAF 105 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~-~~~~i~v 105 (204)
.+|-|||.|+|+||++|+...|.+++|.+.+++. ++.|.-+
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKm 424 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKM 424 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEe
Confidence 5699999999999999999999999999999986 4555444
No 153
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=97.80 E-value=0.00019 Score=54.44 Aligned_cols=130 Identities=15% Similarity=0.245 Sum_probs=83.6
Q ss_pred CcccceEEecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCC---CeEEEEEeCCCCCCCCCCCHHH
Q 028736 44 KSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ---DFEVLAFPCNQFAGQEPGSNEE 120 (204)
Q Consensus 44 ~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~---~~~~i~v~~d~~~~~~~~~~~~ 120 (204)
.+.|.|++-+ ...+.+.+|+++||-+.-.+|..|...+..|..|..++.+. ++.++.||-- +....
T Consensus 8 ~~~p~W~i~~----~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~-------~~~s~ 76 (238)
T PF04592_consen 8 KPPPPWKIGG----QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ-------GEHSR 76 (238)
T ss_pred CCCCCceECC----chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC-------Ccchh
Confidence 4567777644 44567789999999999999999999999999999999876 4677777622 22333
Q ss_pred HH-HHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCC---ChhHHHHH
Q 028736 121 IQ-EVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT---SPLKIEKD 196 (204)
Q Consensus 121 ~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~---~~~~~~~~ 196 (204)
++ ..++.+....+|++.. +.....+ |..+...+. -+||+|+-|++.+...-+. ...-++++
T Consensus 77 ~~~~~l~~r~~~~ipVyqq-~~~q~dv---W~~L~G~kd-----------D~~iyDRCGrL~~~i~~P~S~l~~~~ve~A 141 (238)
T PF04592_consen 77 LKYWELKRRVSEHIPVYQQ-DENQPDV---WELLNGSKD-----------DFLIYDRCGRLTYHIPLPYSFLQFPYVEAA 141 (238)
T ss_pred HHHHHHHHhCCCCCceecC-CccccCH---HHHhCCCcC-----------cEEEEeccCcEEEEecCcHHHhcCHHHHHH
Confidence 33 2444444456888842 3232323 333322222 3499999999998754332 22335555
Q ss_pred HHH
Q 028736 197 IQN 199 (204)
Q Consensus 197 l~~ 199 (204)
|+.
T Consensus 142 i~~ 144 (238)
T PF04592_consen 142 IKS 144 (238)
T ss_pred HHH
Confidence 544
No 154
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.79 E-value=0.00033 Score=54.71 Aligned_cols=127 Identities=8% Similarity=0.095 Sum_probs=63.9
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhh-cCccccce--eec--
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTM-FKAEFPIF--DKI-- 139 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~-- 139 (204)
.+|.+|+.|....||+|++....+..+.+. ++-.++.+.+.. ..+++....+.-+... ...-+... ...
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~-----l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~ 189 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGI-----IKPDSPGKAAAILAAKDPAKALQEYEASGGKL 189 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccc-----cCcchHHHHHHHHhccCHHHHHHHHHHhhhcc
Confidence 457899999999999999999998887654 221233343321 1233444333332211 00001000 000
Q ss_pred --cCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHH
Q 028736 140 --DVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQ 198 (204)
Q Consensus 140 --d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~ 198 (204)
.............+.....-...-+++.+|++++.|.+|.+. ...|..+++++.+.|.
T Consensus 190 ~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~-~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 190 GLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQ-QVVGLPDPAQLAEIMG 249 (251)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEE-EecCCCCHHHHHHHhC
Confidence 000000011111111000000013788999999999999764 3466667777777663
No 155
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=97.77 E-value=0.0023 Score=45.76 Aligned_cols=142 Identities=19% Similarity=0.283 Sum_probs=82.7
Q ss_pred CCCcccceEEecC-----CCCeeecCC-----CCCcEEEEEEeccCCCCCHHhHHHHHHHHHH-hcCCCeEEEEE-eCCC
Q 028736 42 APKSIYDFTVKDI-----RGNDVSLSG-----YRGKVLLVVNVASKCGLTQSNYKELNVLYEK-YKNQDFEVLAF-PCNQ 109 (204)
Q Consensus 42 ~~~~~p~~~l~~~-----~g~~~~l~~-----~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~-~~~~~~~~i~v-~~d~ 109 (204)
.|.++|.+++.+- +|..++... +.||+.+|...|-.-..=..--+-+..+.+. +....++..+| +.|+
T Consensus 3 ~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~dD 82 (160)
T PF09695_consen 3 LGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDD 82 (160)
T ss_pred CCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEeccc
Confidence 4667777777663 455555544 5899999999974433333334444445444 44444555543 3331
Q ss_pred CCCCCCCCHHHHHHHHHhhcCcccccee-eccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCC
Q 028736 110 FAGQEPGSNEEIQEVACTMFKAEFPIFD-KIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT 188 (204)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~ 188 (204)
.-..+..=++..+++. ...||.-. -.|.+|.. +..|++-.. ...++++|++|+|++...|.+
T Consensus 83 ---Ai~gt~~fVrss~e~~-kk~~p~s~~vlD~~G~~-~~aW~L~~~------------~SaiiVlDK~G~V~F~k~G~L 145 (160)
T PF09695_consen 83 ---AIWGTGGFVRSSAEDS-KKEFPWSQFVLDSNGVV-RKAWQLQEE------------SSAIIVLDKQGKVQFVKEGAL 145 (160)
T ss_pred ---ccccchHHHHHHHHHh-hhhCCCcEEEEcCCCce-eccccCCCC------------CceEEEEcCCccEEEEECCCC
Confidence 1123344555666443 43444321 15666643 333322110 145689999999999999999
Q ss_pred ChhHHHHHHHHh
Q 028736 189 SPLKIEKDIQNL 200 (204)
Q Consensus 189 ~~~~~~~~l~~l 200 (204)
+++++.+.|.-+
T Consensus 146 s~~Ev~qVi~Ll 157 (160)
T PF09695_consen 146 SPAEVQQVIALL 157 (160)
T ss_pred CHHHHHHHHHHH
Confidence 999988877543
No 156
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.69 E-value=0.00032 Score=48.04 Aligned_cols=42 Identities=17% Similarity=0.031 Sum_probs=29.3
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCC--CeEEEEEeCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ--DFEVLAFPCN 108 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~--~~~~i~v~~d 108 (204)
+.+.+||.|+++| |.|.+ .|+.+++..++.+. .+.+.-|.++
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~ 60 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIK 60 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecc
Confidence 5589999999955 44444 57788888777542 3666667665
No 157
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.66 E-value=0.00019 Score=49.32 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=32.6
Q ss_pred CCcEEEEEEec-------cCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 65 RGKVLLVVNVA-------SKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 65 ~gk~~lv~f~~-------t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
.|++++|.|.+ +|||+|..-.|.+++......+ +..+|-|.+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG 67 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVG 67 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE--
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 56788888875 4999999999999999988544 6788877653
No 158
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=97.62 E-value=0.0015 Score=50.93 Aligned_cols=133 Identities=17% Similarity=0.223 Sum_probs=77.1
Q ss_pred CCCcccceEEecCCCCeeecCC-CCCcEEEEEEecc-CCCCCHHhHHHHHHHHHHhc-CC--CeEEEEEeCCCCCCCCCC
Q 028736 42 APKSIYDFTVKDIRGNDVSLSG-YRGKVLLVVNVAS-KCGLTQSNYKELNVLYEKYK-NQ--DFEVLAFPCNQFAGQEPG 116 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~-~~gk~~lv~f~~t-~C~~C~~~~~~l~~l~~~~~-~~--~~~~i~v~~d~~~~~~~~ 116 (204)
....+|++...+++|+.+++.+ ++||+.||-.+++ |=..|....-. ....++. .. .+++|-|++.
T Consensus 97 kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~-------- 166 (252)
T PF05176_consen 97 KALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLI-------- 166 (252)
T ss_pred hCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecc--------
Confidence 3456899999999999888877 5999999876664 43334444333 2333333 23 6999999874
Q ss_pred CHHHHHHHHHhhc------------CccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEec
Q 028736 117 SNEEIQEVACTMF------------KAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERY 184 (204)
Q Consensus 117 ~~~~~~~~~~~~~------------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 184 (204)
..-++.++..-. ...|-+. + .+.....+-..+ ++ .-..+.++||||++|+|++..
T Consensus 167 -e~~~k~~l~~~~~~~lrk~ip~~~h~~Yf~~---~-~~~~~~~iRe~L-----gi---~N~~~GYvyLVD~~grIRWag 233 (252)
T PF05176_consen 167 -ENWLKSWLVKLFMGSLRKSIPEERHDRYFIV---Y-RGQLSDDIREAL-----GI---NNSYVGYVYLVDPNGRIRWAG 233 (252)
T ss_pred -hHHHHHHHHHHHhhhhhccCCHHHCceEEEE---e-CCcccHHHHHHh-----CC---CCCCcCeEEEECCCCeEEeCc
Confidence 233445543211 1111111 1 110011110111 00 112236789999999999999
Q ss_pred CCCCChhHHHHHH
Q 028736 185 APTTSPLKIEKDI 197 (204)
Q Consensus 185 ~g~~~~~~~~~~l 197 (204)
.|..+++++....
T Consensus 234 sG~At~~E~~~L~ 246 (252)
T PF05176_consen 234 SGPATPEELESLW 246 (252)
T ss_pred cCCCCHHHHHHHH
Confidence 9999988766544
No 159
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.59 E-value=9.6e-05 Score=53.47 Aligned_cols=32 Identities=9% Similarity=0.020 Sum_probs=21.1
Q ss_pred CCCeeecCCCCCcEEEEEEeccCCCCCHHhHH
Q 028736 55 RGNDVSLSGYRGKVLLVVNVASKCGLTQSNYK 86 (204)
Q Consensus 55 ~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~ 86 (204)
+.+.+..+...+|+++|.++++||..|..+..
T Consensus 26 ~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~ 57 (163)
T PF03190_consen 26 GEEALEKAKKENKPIFLSIGYSWCHWCHVMER 57 (163)
T ss_dssp SHHHHHHHHHHT--EEEEEE-TT-HHHHHHHH
T ss_pred CHHHHHHHHhcCCcEEEEEEecCCcchhhhcc
Confidence 33455555668899999999999999996654
No 160
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.55 E-value=0.00073 Score=42.30 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=17.8
Q ss_pred EEEEeccCCCCCHHhHHHHHHH
Q 028736 70 LVVNVASKCGLTQSNYKELNVL 91 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l 91 (204)
++.||++|||+|+...+.|.++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~ 23 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL 23 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 5789999999999877766544
No 161
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.53 E-value=0.00027 Score=45.22 Aligned_cols=49 Identities=24% Similarity=0.264 Sum_probs=34.0
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhh
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTM 128 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~ 128 (204)
|+.|+++|||+|....+.|.++. ... .+.++.|+.+ ++.+++++++.+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~-------~~~~~~~~~l~~~ 49 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQL-------SNGSEIQDYLEEI 49 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCC-------CChHHHHHHHHHH
Confidence 46789999999999988888876 221 3777777654 2455666666443
No 162
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0006 Score=48.12 Aligned_cols=129 Identities=16% Similarity=0.144 Sum_probs=78.6
Q ss_pred CCCcccceEEecC------CC-CeeecCC-CCCcEEEE-EEeccCCCCCHH-hHHHHHHHHHHhcCCCeE-EEEEeCCCC
Q 028736 42 APKSIYDFTVKDI------RG-NDVSLSG-YRGKVLLV-VNVASKCGLTQS-NYKELNVLYEKYKNQDFE-VLAFPCNQF 110 (204)
Q Consensus 42 ~~~~~p~~~l~~~------~g-~~~~l~~-~~gk~~lv-~f~~t~C~~C~~-~~~~l~~l~~~~~~~~~~-~i~v~~d~~ 110 (204)
+|+++|+.++... +| ..++..+ ++||.++| ...+...|.|.. .+|...++..+++++++. |+.|+++
T Consensus 5 vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN-- 82 (165)
T COG0678 5 VGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN-- 82 (165)
T ss_pred cCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC--
Confidence 7889999887765 22 3444444 47755554 566778899887 899999999999988643 3445554
Q ss_pred CCCCCCCHHHHHHHHHhhcCc-cccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEec
Q 028736 111 AGQEPGSNEEIQEVACTMFKA-EFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERY 184 (204)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 184 (204)
+.-.++.|.+.+.+. +..++ .|.+++-.+. .+.+-...... .++.....-.++ .||.+..-+
T Consensus 83 ------D~FVm~AWak~~g~~~~I~fi--~Dg~geFTk~-~Gm~~d~~~~g--~G~RS~RYsmvV-~nGvV~~~~ 145 (165)
T COG0678 83 ------DAFVMNAWAKSQGGEGNIKFI--PDGNGEFTKA-MGMLVDKSDLG--FGVRSWRYSMVV-ENGVVEKLF 145 (165)
T ss_pred ------cHHHHHHHHHhcCCCccEEEe--cCCCchhhhh-cCceeecccCC--cceeeeeEEEEE-eCCeEEEEE
Confidence 688999999765333 34444 4444442221 12221111111 234444555666 689888764
No 163
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.47 E-value=0.00048 Score=53.19 Aligned_cols=119 Identities=13% Similarity=0.151 Sum_probs=62.9
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHH-HHHhhcCccccce-eeccCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQE-VACTMFKAEFPIF-DKIDVN 142 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~d~~ 142 (204)
.|+.+++.|....||+|++..+.+.++.+ .++.+..+...- .+..+++...+.. |+.+.....+.-. ......
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~~~P~-~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~ 180 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYLAFPR-QGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS 180 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEEeccC-CCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence 56899999999999999999988887654 346665543321 1111222333222 2211000111110 000000
Q ss_pred C----CCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHh
Q 028736 143 G----KNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNL 200 (204)
Q Consensus 143 ~----~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 200 (204)
. .....-..+... .+|+++|++++ +||+++ .|..+++++.+.|++.
T Consensus 181 ~~~c~~~v~~~~~la~~-------lgi~gTPtiv~--~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 181 PASCDVDIADHYALGVQ-------FGVQGTPAIVL--SNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccccchHHHhHHHHHH-------cCCccccEEEE--cCCeEe---eCCCCHHHHHHHHHHc
Confidence 0 001111111111 38889999774 478776 6777888898888764
No 164
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.47 E-value=0.00085 Score=42.34 Aligned_cols=31 Identities=13% Similarity=0.204 Sum_probs=23.3
Q ss_pred eccCCCCCHHhHHHHHHHHHHhcCCCeEEEEE
Q 028736 74 VASKCGLTQSNYKELNVLYEKYKNQDFEVLAF 105 (204)
Q Consensus 74 ~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v 105 (204)
++++||.|+.....++++.++++ ..++++-+
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~ 36 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG-IEVEIIDI 36 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT-EEEEEEET
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEc
Confidence 57789999999999999988874 33444443
No 165
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.20 E-value=0.0066 Score=44.46 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=34.1
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEe
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~ 106 (204)
.++++|+.|+...||+|....+.+.++.+++.. .+.+.-+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEEEcC
Confidence 569999999999999999999999999999854 35555444
No 166
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.15 E-value=0.0013 Score=49.41 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=26.1
Q ss_pred eecCCCCCcEEEEEEeccCCCCCHHhHHHHHH
Q 028736 59 VSLSGYRGKVLLVVNVASKCGLTQSNYKELNV 90 (204)
Q Consensus 59 ~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~ 90 (204)
+.+..-.+++.++.|....||+|.+..+.+.+
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh
Confidence 34444456899999999999999999988877
No 167
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.12 E-value=0.0064 Score=42.56 Aligned_cols=91 Identities=10% Similarity=0.013 Sum_probs=66.3
Q ss_pred cEEEEEEecc--CCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 67 KVLLVVNVAS--KCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 67 k~~lv~f~~t--~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
...+++|-+. .+|-+..-.-.|.++.++|.+..+.+.-|++|. .++ + ..+
T Consensus 35 ~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~-------~~~-L----A~~---------------- 86 (132)
T PRK11509 35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ-------SEA-I----GDR---------------- 86 (132)
T ss_pred CcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC-------CHH-H----HHH----------------
Confidence 4555555543 556677777788888888865458888887663 221 1 122
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhhhcC
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLGSC 204 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~~~ 204 (204)
++|..+|+++++ +||+.+....|..+.+++.+.|++++..+
T Consensus 87 ------------------fgV~siPTLl~F-kdGk~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 87 ------------------FGVFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred ------------------cCCccCCEEEEE-ECCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 266777998888 79999999999989999999999988654
No 168
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.09 E-value=0.0012 Score=52.01 Aligned_cols=32 Identities=13% Similarity=0.057 Sum_probs=26.8
Q ss_pred cEEEEEEeccCCCCCHHhHHHHHHHHHHhcCC
Q 028736 67 KVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ 98 (204)
Q Consensus 67 k~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~ 98 (204)
-..+|.|+|+||.+|++.-|.+.+.--++++.
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdi 75 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDI 75 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhc
Confidence 57899999999999999888888776666654
No 169
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.08 E-value=0.01 Score=44.66 Aligned_cols=83 Identities=14% Similarity=0.205 Sum_probs=64.7
Q ss_pred ccceEEecCCCCeeecCCC-CCc--EEEEEEe-----ccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCC
Q 028736 46 IYDFTVKDIRGNDVSLSGY-RGK--VLLVVNV-----ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGS 117 (204)
Q Consensus 46 ~p~~~l~~~~g~~~~l~~~-~gk--~~lv~f~-----~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~ 117 (204)
-.+..+...+|. ++|.++ .|+ .+|..|. ..-||.|...+..++....-+...++.++.|+- ..
T Consensus 46 ~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSr--------aP 116 (211)
T PF05988_consen 46 DKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSR--------AP 116 (211)
T ss_pred CCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeC--------CC
Confidence 345788888885 888774 664 4444444 457999999999998888888888999999994 45
Q ss_pred HHHHHHHHHhhcCccccceee
Q 028736 118 NEEIQEVACTMFKAEFPIFDK 138 (204)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~ 138 (204)
.+++..|. ++.|-+||+++.
T Consensus 117 ~~~i~afk-~rmGW~~pw~Ss 136 (211)
T PF05988_consen 117 LEKIEAFK-RRMGWTFPWYSS 136 (211)
T ss_pred HHHHHHHH-HhcCCCceEEEc
Confidence 88899998 456999999953
No 170
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=97.03 E-value=0.019 Score=39.55 Aligned_cols=106 Identities=24% Similarity=0.268 Sum_probs=63.3
Q ss_pred cCCCCCcEEEEEEecc--CCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC-CCCHHHHHHHHHhhcCcccccee
Q 028736 61 LSGYRGKVLLVVNVAS--KCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQE-PGSNEEIQEVACTMFKAEFPIFD 137 (204)
Q Consensus 61 l~~~~gk~~lv~f~~t--~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 137 (204)
|+++++|-.+|..+|+ .-+.-......|.+....+.+.++.++.+.-+.+.... .-++....... +++..+
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr-~~l~~~----- 76 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALR-KRLRIP----- 76 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHH-HHhCCC-----
Confidence 4555554444444443 44446777888888888888888988888533211100 01111111111 211110
Q ss_pred eccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHh
Q 028736 138 KIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNL 200 (204)
Q Consensus 138 ~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 200 (204)
. ..-+.+||++||.+..++..+.+.+++.+.|.++
T Consensus 77 -------------------~---------~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 77 -------------------P---------GGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred -------------------C---------CceEEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 0 0135699999999999999999999999888764
No 171
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=96.99 E-value=0.0072 Score=41.22 Aligned_cols=84 Identities=19% Similarity=0.219 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCCCchhHHHHHHhh-----------
Q 028736 88 LNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSE----------- 156 (204)
Q Consensus 88 l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----------- 156 (204)
|.+...++.+.++.+|.|.+. +.+.+++|++. .+.+++++ .|++ ..+|..++-.
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g--------~~~~~~~f~~~-~~~p~~ly--~D~~----~~lY~~lg~~~~~~~~~~~~~ 66 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCG--------SPEGIEKFCEL-TGFPFPLY--VDPE----RKLYKALGLKRGLKWSLLPPA 66 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcC--------CHHHHHHHHhc-cCCCCcEE--EeCc----HHHHHHhCCccccccCCCchH
Confidence 455667777788999999864 67669999954 58889877 4443 2233322111
Q ss_pred ----------------cCCcc-ccccccceeeEEECCCCcEEEecCC
Q 028736 157 ----------------KGGFL-GDAIKWNFTKFLVNKEGKVVERYAP 186 (204)
Q Consensus 157 ----------------~~~~~-~~~i~~~P~~~lid~~G~i~~~~~g 186 (204)
..... ...+...+..||+|++|+|++.|..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~ 113 (115)
T PF13911_consen 67 LWSGLSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRD 113 (115)
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEec
Confidence 11112 3355566889999999999998754
No 172
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0052 Score=51.09 Aligned_cols=42 Identities=21% Similarity=0.166 Sum_probs=35.5
Q ss_pred CcEEEEEEeccCCCCCHHhHHHHHHHHHHhcC-CCeEEEEEeC
Q 028736 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKN-QDFEVLAFPC 107 (204)
Q Consensus 66 gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~-~~~~~i~v~~ 107 (204)
....+|.|+++||++|+...+.+.++...+.. ..+.+..+..
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~ 204 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDA 204 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeecc
Confidence 46789999999999999999999999999875 4577777753
No 173
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.0068 Score=41.19 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=34.6
Q ss_pred CCcEEEEEEec--------cCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 65 RGKVLLVVNVA--------SKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 65 ~gk~~lv~f~~--------t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
+|+.+++.|.+ +|||+|..-.|.+.+..+...+ ++.+|-|-+.
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG 74 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVG 74 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEec
Confidence 66668888875 5999999999999999995554 5888888764
No 174
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.65 E-value=0.0046 Score=43.96 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=32.7
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEE
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAF 105 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v 105 (204)
.++++++.|+..+||+|....+.+.++..++++..+.+..+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 46899999999999999999999999888876423444333
No 175
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.056 Score=41.85 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=45.2
Q ss_pred eEEecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEe
Q 028736 49 FTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (204)
Q Consensus 49 ~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~ 106 (204)
......++......+..++++++.|....||+|.+.++.+.+.+...++..+.+.-+.
T Consensus 67 ~~~~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~~~ 124 (244)
T COG1651 67 VLYLTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLREFP 124 (244)
T ss_pred eeeecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEEEee
Confidence 3444567777777777779999999999999999999999998888777544444433
No 176
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.021 Score=40.72 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=77.1
Q ss_pred CCCcccc--eE-EecCC----CCeeecCCC-CCcEEEEE-EeccCCCC-CHHhHHHHHHHHHHhcCCCeE-EEEEeCCCC
Q 028736 42 APKSIYD--FT-VKDIR----GNDVSLSGY-RGKVLLVV-NVASKCGL-TQSNYKELNVLYEKYKNQDFE-VLAFPCNQF 110 (204)
Q Consensus 42 ~~~~~p~--~~-l~~~~----g~~~~l~~~-~gk~~lv~-f~~t~C~~-C~~~~~~l~~l~~~~~~~~~~-~i~v~~d~~ 110 (204)
+|+..|+ ++ +.+.. +.++.++++ +||.++|+ ..+...|. |....|-+..-.++++.+++. ||.|++|
T Consensus 11 vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSVn-- 88 (171)
T KOG0541|consen 11 VGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSVN-- 88 (171)
T ss_pred ccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEecC--
Confidence 8888998 44 22222 126777775 88666665 44567777 788999999999999988754 4567765
Q ss_pred CCCCCCCHHHHHHHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCC
Q 028736 111 AGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAP 186 (204)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g 186 (204)
++-.++.|.+. ++.+-.+-.-.|..+.-.+.+ ++..+-+... .+++. -++-++=.||++......
T Consensus 89 ------DpFv~~aW~k~-~g~~~~V~f~aD~~g~ftk~l-gleld~~d~~--~g~RS-~R~a~vvengkV~~~nvE 153 (171)
T KOG0541|consen 89 ------DPFVMKAWAKS-LGANDHVKFVADPAGEFTKSL-GLELDLSDKL--LGVRS-RRYALVVENGKVTVVNVE 153 (171)
T ss_pred ------cHHHHHHHHhh-cCccceEEEEecCCCceeeec-cceeeecccc--Ccccc-ccEEEEEeCCeEEEEEec
Confidence 68899999854 466433322245555533222 2211111000 01111 233344468999887533
No 177
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.32 E-value=0.035 Score=48.46 Aligned_cols=40 Identities=15% Similarity=0.163 Sum_probs=28.6
Q ss_pred CcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEE
Q 028736 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAF 105 (204)
Q Consensus 66 gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v 105 (204)
++..+-.|.+++||+|+.....++++..+..+-...+|-+
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~ 515 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDV 515 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEEC
Confidence 3444557789999999999999988888866323444443
No 178
>PHA03050 glutaredoxin; Provisional
Probab=96.25 E-value=0.011 Score=40.09 Aligned_cols=50 Identities=14% Similarity=0.204 Sum_probs=29.2
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhh
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTM 128 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~ 128 (204)
|+.|..+|||+|.+....|++..-+.+ .++++-|.- .++..++++.+.+.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~--~~~~i~i~~-------~~~~~~~~~~l~~~ 64 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG--AYEIVDIKE-------FKPENELRDYFEQI 64 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC--CcEEEECCC-------CCCCHHHHHHHHHH
Confidence 667788999999976666655432221 366666642 12334556666443
No 179
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.23 E-value=0.014 Score=37.49 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=28.7
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
++.|..+|||.|.+....|+++..++. ++.+.-++++
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~ 39 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD--DFDYRYVDIH 39 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc--CCcEEEEECC
Confidence 567888999999999999999987764 4555555554
No 180
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.22 E-value=0.042 Score=43.28 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=34.2
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPC 107 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~ 107 (204)
++.+|||.|+-+.++.|...-..|..|..+|.. +.|+.|..
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a 185 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRA 185 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEE
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEeh
Confidence 456899999999999999999999999999996 88888864
No 181
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.21 E-value=0.013 Score=37.07 Aligned_cols=46 Identities=22% Similarity=0.174 Sum_probs=30.1
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHh
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACT 127 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~ 127 (204)
++.|..+|||.|......|.++.. .+..+-|+.+. ...+++..+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~-------~~~~~~~~~~~ 47 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHE-------DGSEIQDYLQE 47 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCC-------ChHHHHHHHHH
Confidence 467778999999977777776544 36667666542 33455555543
No 182
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.18 E-value=0.015 Score=41.77 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=40.6
Q ss_pred CeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcC-CCeEEEEEeCC
Q 028736 57 NDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKN-QDFEVLAFPCN 108 (204)
Q Consensus 57 ~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~-~~~~~i~v~~d 108 (204)
....+....++++|+.|+...||+|....+.+.++.+++.+ ..+.++.+.+.
T Consensus 3 ~~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 3 YDPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp TSEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred CCCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 34556676779999999999999999999999999999832 25888877663
No 183
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.62 E-value=0.055 Score=32.94 Aligned_cols=32 Identities=9% Similarity=0.198 Sum_probs=21.1
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
++.|.++|||+|......+.+ .++.+..+.++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~ 33 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVD 33 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCC
Confidence 467888999999975555543 24555555554
No 184
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.17 Score=37.34 Aligned_cols=55 Identities=20% Similarity=0.310 Sum_probs=44.5
Q ss_pred ecCCCCeeecCCC-CCcEEEEEEe-ccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEe
Q 028736 52 KDIRGNDVSLSGY-RGKVLLVVNV-ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (204)
Q Consensus 52 ~~~~g~~~~l~~~-~gk~~lv~f~-~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~ 106 (204)
.+..|+.+.+.++ +.+..+|.|. -+-|--|+++...|..+..-+++.|+.+|+|-
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg 91 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG 91 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 6789999999886 5455555544 58999999999999999666777799999996
No 185
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=95.49 E-value=0.17 Score=36.03 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=24.9
Q ss_pred eeeEEECCCCcEEEecCCCCChhHHHHHHH
Q 028736 169 FTKFLVNKEGKVVERYAPTTSPLKIEKDIQ 198 (204)
Q Consensus 169 P~~~lid~~G~i~~~~~g~~~~~~~~~~l~ 198 (204)
...+++|++|++.+...|.++..++.+.|.
T Consensus 148 SaivVlDk~G~VkfvkeGaLt~aevQ~Vi~ 177 (184)
T COG3054 148 SAVVVLDKDGRVKFVKEGALTQAEVQQVID 177 (184)
T ss_pred ceEEEEcCCCcEEEEecCCccHHHHHHHHH
Confidence 466999999999999999998877665553
No 186
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.39 E-value=0.081 Score=32.74 Aligned_cols=32 Identities=6% Similarity=0.127 Sum_probs=21.7
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
++.|..+|||.|......|++ .++.+-.++++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~ 33 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVD 33 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECC
Confidence 456788999999976666654 24555555554
No 187
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.37 E-value=0.1 Score=33.63 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=25.2
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
++.|..+|||+|.+....|.++..++.. +.+.-++++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~--i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD--FEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC--CcEEEEECC
Confidence 4567789999999888888777655433 444444443
No 188
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.16 E-value=0.045 Score=32.49 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=21.7
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
++.|..+|||+|......|+ +.++.+-.++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~-------~~~i~y~~~dv~ 32 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLD-------EKGIPYEEVDVD 32 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHH-------HTTBEEEEEEGG
T ss_pred cEEEEcCCCcCHHHHHHHHH-------HcCCeeeEcccc
Confidence 46788899999997666662 234555556554
No 189
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.98 E-value=0.18 Score=43.63 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=29.7
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEE
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAF 105 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v 105 (204)
.++.-+..|..++||+|+.....++++..... ++..-.|
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~i 153 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMI 153 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEE
Confidence 34556888999999999998999988888755 3554444
No 190
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=94.96 E-value=0.09 Score=31.76 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=17.4
Q ss_pred EEEEeccCCCCCHHhHHHHHHHH
Q 028736 70 LVVNVASKCGLTQSNYKELNVLY 92 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~ 92 (204)
++.|..+|||+|......|.+..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~ 24 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG 24 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC
Confidence 45678899999997777666543
No 191
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=94.94 E-value=0.22 Score=31.90 Aligned_cols=38 Identities=18% Similarity=0.095 Sum_probs=28.3
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
+..|+...||.|....+.+.++...... ++.+.-+.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccc
Confidence 4678899999999999999998854443 4666555443
No 192
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=94.82 E-value=0.09 Score=33.02 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=16.3
Q ss_pred EEEEeccCCCCCHHhHHHHHH
Q 028736 70 LVVNVASKCGLTQSNYKELNV 90 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~ 90 (204)
+..|+.+|||+|......|++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~ 21 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSS 21 (79)
T ss_pred CEEEecCCChhHHHHHHHHHH
Confidence 356788999999977777764
No 193
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=94.82 E-value=0.11 Score=40.42 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=31.1
Q ss_pred CCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcC
Q 028736 64 YRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKN 97 (204)
Q Consensus 64 ~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~ 97 (204)
..||+.+++..+-|||.|..+.=.|-....+|+.
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 3689999999999999999999999999999886
No 194
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.64 E-value=0.17 Score=38.24 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=59.6
Q ss_pred ceEEecCCCCeeecCCC-CCcEEEE--EE-ec----cCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHH
Q 028736 48 DFTVKDIRGNDVSLSGY-RGKVLLV--VN-VA----SKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNE 119 (204)
Q Consensus 48 ~~~l~~~~g~~~~l~~~-~gk~~lv--~f-~~----t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~ 119 (204)
+..+-..+| ..+|+++ .||-.|| -| ++ --||.|...+..+......+...++.+++|+-- .-+
T Consensus 54 ~Y~Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRA--------Pl~ 124 (247)
T COG4312 54 DYVFETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRA--------PLE 124 (247)
T ss_pred eeEeecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecC--------cHH
Confidence 455556677 6777774 6653333 33 23 369999999999998888888889999999843 467
Q ss_pred HHHHHHHhhcCccccceeec
Q 028736 120 EIQEVACTMFKAEFPIFDKI 139 (204)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~ 139 (204)
++..|- .++|-+||+++..
T Consensus 125 ~l~~~k-~rmGW~f~w~Ss~ 143 (247)
T COG4312 125 ELVAYK-RRMGWQFPWVSST 143 (247)
T ss_pred HHHHHH-HhcCCcceeEecc
Confidence 777777 5569999998543
No 195
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.41 E-value=0.24 Score=30.60 Aligned_cols=32 Identities=6% Similarity=0.038 Sum_probs=21.1
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
++.|..+|||.|.+....|++ .++.+..++++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~ 34 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KGLPYVEINID 34 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CCCceEEEECC
Confidence 456677999999977666664 34555555554
No 196
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.19 Score=31.96 Aligned_cols=45 Identities=11% Similarity=0.228 Sum_probs=28.6
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHh
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACT 127 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~ 127 (204)
++.|.-++||+|.+.-..|. +.++.+.-|.++. +..++.++++..
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~------~~~~~~~~~~~~ 47 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDD------DEPEEAREMVKR 47 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecC------CcHHHHHHHHHH
Confidence 45566689999997766666 3455555555542 344567777744
No 197
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.16 Score=38.42 Aligned_cols=44 Identities=14% Similarity=-0.037 Sum_probs=36.8
Q ss_pred CCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeC
Q 028736 64 YRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPC 107 (204)
Q Consensus 64 ~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~ 107 (204)
-+.++.+|.|++.|-|.|....|-+.++-.+|...++.+=-|.+
T Consensus 142 nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDi 185 (265)
T KOG0914|consen 142 NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDI 185 (265)
T ss_pred CCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceee
Confidence 35579999999999999999999999999999987666544443
No 198
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.23 E-value=0.38 Score=41.64 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=29.5
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEE
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAF 105 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v 105 (204)
.++.-+..|..+.||+|+.....++++...... +..-.|
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~--i~~~~i 154 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNPN--ISHTMI 154 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCC--ceEEEE
Confidence 445668889999999999888888888887663 443334
No 199
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.22 E-value=0.67 Score=39.16 Aligned_cols=63 Identities=10% Similarity=0.047 Sum_probs=45.3
Q ss_pred ccceEEecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 028736 46 IYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 109 (204)
Q Consensus 46 ~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~ 109 (204)
+....+.-.+|..+++.+++|...+|-.-++- .+|.+.+...+...+++.+.+|.||-|..+.
T Consensus 276 L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~~ 338 (453)
T PLN03098 276 LSRLPVRLSTNRIVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWGE 338 (453)
T ss_pred hccceEeccCCCEEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecCC
Confidence 34444444467899999999954444333322 5578888889999999999999999998763
No 200
>PHA03075 glutaredoxin-like protein; Provisional
Probab=94.00 E-value=0.47 Score=32.16 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=25.8
Q ss_pred cEEEEEEeccCCCCCHHhHHHHHHHHHHhc
Q 028736 67 KVLLVVNVASKCGLTQSNYKELNVLYEKYK 96 (204)
Q Consensus 67 k~~lv~f~~t~C~~C~~~~~~l~~l~~~~~ 96 (204)
|.++|-|+-+-|+.|......|+++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 678999999999999998888877777654
No 201
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.78 E-value=0.24 Score=32.79 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=14.9
Q ss_pred EEEEeccCCCCCHHhHHHHHH
Q 028736 70 LVVNVASKCGLTQSNYKELNV 90 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~ 90 (204)
++.|..+|||+|.+.-..|.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~ 30 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLT 30 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 556677999999966554443
No 202
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=93.77 E-value=0.21 Score=31.50 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=24.9
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
+.+.-|+.|..+|||+|.+.-..|.+ .++.+..++++
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~-------~gi~y~~idi~ 41 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKE-------KGYDFEEIPLG 41 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHH-------cCCCcEEEECC
Confidence 34555778888999999977766653 24555555554
No 203
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.29 Score=30.43 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=32.0
Q ss_pred EEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHh
Q 028736 71 VVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACT 127 (204)
Q Consensus 71 v~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~ 127 (204)
+.|++-.||.|..-...+.++.-+ +..|-|. .+-+.+++|++-
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~-----yd~VeIt---------~Sm~NlKrFl~l 47 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD-----YDFVEIT---------ESMANLKRFLHL 47 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC-----ceeeehh---------hhhhhHHHHHhh
Confidence 568899999999777777665443 5556664 478899999854
No 204
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.39 E-value=0.47 Score=31.82 Aligned_cols=41 Identities=15% Similarity=0.420 Sum_probs=27.6
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEe
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~ 106 (204)
..++++|+=-+|.||....-+..+++..+...+. +.+..+.
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~ 58 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLD 58 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEE
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEE
Confidence 4689999888999999999999999999988764 4444443
No 205
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.29 E-value=0.33 Score=30.90 Aligned_cols=32 Identities=6% Similarity=0.290 Sum_probs=21.8
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
+..|..+|||+|......|.+ .++.+-.++++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~gI~~~~idi~ 34 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RGFDFEMINVD 34 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CCCceEEEECC
Confidence 456778999999976666633 45666666654
No 206
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=93.05 E-value=0.75 Score=36.19 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=46.3
Q ss_pred CCCcccceEEecCCCCeeecCCCCC-cEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHH
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRG-KVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEE 120 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~g-k~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~ 120 (204)
.-..+|-|++.|.+|+.+-.+.-.| +.+-+++.-. .+-...+..+++...+.+ .+++|+.|+++ .
T Consensus 78 kL~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~q--edA~afL~~lk~~~p~l~-~~~kV~pvsL~-----------~ 143 (270)
T TIGR00995 78 ILAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQ--EDAEAFLAQLRKRKPEVG-SQAKVVPITLD-----------Q 143 (270)
T ss_pred HhcCCceEEEEcCCCCeEEEECCCCCceEEEEECCH--HHHHHHHHHHHhhCcccc-CCceEEEEEHH-----------H
Confidence 4457899999999999999887666 5555433310 111222333333333333 25899999865 3
Q ss_pred HHHHHHhhcCccccce
Q 028736 121 IQEVACTMFKAEFPIF 136 (204)
Q Consensus 121 ~~~~~~~~~~~~~~~~ 136 (204)
+-+.. .+ +..|.++
T Consensus 144 vYkl~-~e-~l~F~fi 157 (270)
T TIGR00995 144 VYKLK-VE-GIGFRFL 157 (270)
T ss_pred HHHHh-hc-CccEEEe
Confidence 33443 23 6777666
No 207
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=92.86 E-value=0.43 Score=31.50 Aligned_cols=26 Identities=12% Similarity=0.350 Sum_probs=17.1
Q ss_pred CCcEEEEEEec----cCCCCCHHhHHHHHH
Q 028736 65 RGKVLLVVNVA----SKCGLTQSNYKELNV 90 (204)
Q Consensus 65 ~gk~~lv~f~~----t~C~~C~~~~~~l~~ 90 (204)
+.++++|+--+ +|||+|.+.-..|.+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~ 39 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKA 39 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHH
Confidence 34566666543 799999966665554
No 208
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=92.72 E-value=0.17 Score=38.34 Aligned_cols=42 Identities=7% Similarity=0.047 Sum_probs=31.8
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHH---HHHHHHhcCCCeEEEEEeC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKEL---NVLYEKYKNQDFEVLAFPC 107 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l---~~l~~~~~~~~~~~i~v~~ 107 (204)
.|++.|++|+.-.||+|...-+.+ ..+.+.+.+ ++.++.+.+
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~~ 80 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYHV 80 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEecc
Confidence 467889999999999999877655 677777765 466665544
No 209
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.71 E-value=0.58 Score=41.32 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=20.9
Q ss_pred CCCCCcEEEEEEeccCCCCCHHhHH
Q 028736 62 SGYRGKVLLVVNVASKCGLTQSNYK 86 (204)
Q Consensus 62 ~~~~gk~~lv~f~~t~C~~C~~~~~ 86 (204)
+..++||++|...++||.=|..+..
T Consensus 39 A~~edkPIflSIGys~CHWChVM~~ 63 (667)
T COG1331 39 AKEEDKPILLSIGYSTCHWCHVMAH 63 (667)
T ss_pred HHHhCCCEEEEeccccccchHHHhh
Confidence 3347899999999999999997654
No 210
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=92.60 E-value=0.1 Score=39.89 Aligned_cols=40 Identities=8% Similarity=-0.036 Sum_probs=27.6
Q ss_pred EEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCe--EEEEEeC
Q 028736 68 VLLVVNVASKCGLTQSNYKELNVLYEKYKNQDF--EVLAFPC 107 (204)
Q Consensus 68 ~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~--~~i~v~~ 107 (204)
-.+|.|+++|||.|....+++.+...--.+.++ ..|.|++
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~ 82 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTT 82 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEe
Confidence 347889999999999888888876654333333 3344543
No 211
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=92.59 E-value=0.27 Score=33.64 Aligned_cols=51 Identities=12% Similarity=0.223 Sum_probs=32.7
Q ss_pred EEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCcccc
Q 028736 72 VNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFP 134 (204)
Q Consensus 72 ~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (204)
.|+.++||.|+.....|++ +++.+..+++. .++.+.+++.++++ ..|..+.
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~l~~-~~~~~~~ 53 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-------NGIEYQFIDIG----EDGPTREELLDILS-LLEDGID 53 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCceEEEecC----CChhhHHHHHHHHH-HcCCCHH
Confidence 5677999999977766665 23444444433 13467888998884 4465443
No 212
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=0.77 Score=30.78 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=26.1
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHh
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACT 127 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~ 127 (204)
+|.|--+|||+|.. ++.+..+++. ...++-+ |. .....++++++.+
T Consensus 16 VVifSKs~C~~c~~----~k~ll~~~~v-~~~vvEL--D~-----~~~g~eiq~~l~~ 61 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHR----AKELLSDLGV-NPKVVEL--DE-----DEDGSEIQKALKK 61 (104)
T ss_pred EEEEECCcCchHHH----HHHHHHhCCC-CCEEEEc--cC-----CCCcHHHHHHHHH
Confidence 34456699999996 3444444332 2444444 42 2345578888753
No 213
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=92.27 E-value=0.52 Score=30.50 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=16.4
Q ss_pred CCcEEEEEEec----cCCCCCHHhHHHHHHH
Q 028736 65 RGKVLLVVNVA----SKCGLTQSNYKELNVL 91 (204)
Q Consensus 65 ~gk~~lv~f~~----t~C~~C~~~~~~l~~l 91 (204)
++++++|+--. +|||+|......|.+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~ 36 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL 36 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc
Confidence 44566665433 5899998655555443
No 214
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=91.84 E-value=0.47 Score=29.16 Aligned_cols=31 Identities=13% Similarity=0.152 Sum_probs=20.9
Q ss_pred EEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 71 VVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 71 v~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
..|..++||.|......|.+ .++.+-.++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~ 32 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HGIAFEEINID 32 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEECC
Confidence 45777999999977776753 34555555554
No 215
>PRK10638 glutaredoxin 3; Provisional
Probab=91.82 E-value=0.54 Score=29.81 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=15.7
Q ss_pred EEEEeccCCCCCHHhHHHHHH
Q 028736 70 LVVNVASKCGLTQSNYKELNV 90 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~ 90 (204)
++.|..+|||+|.+....|++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~ 24 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS 24 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH
Confidence 456667999999977666664
No 216
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=91.66 E-value=0.38 Score=32.57 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=31.0
Q ss_pred EEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCcc
Q 028736 71 VVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAE 132 (204)
Q Consensus 71 v~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 132 (204)
..|..++||.|++....|++. +..+..+.+.-+ +.+.++++++++. .+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~------~~~~~el~~~~~~-~~~~ 51 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEE------PPSKEELKKWLEK-SGLP 51 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCC------cccHHHHHHHHHH-cCCC
Confidence 356678999999776655542 112444444433 4578889988853 3543
No 217
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=91.54 E-value=0.33 Score=33.09 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=32.2
Q ss_pred EEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCcccc
Q 028736 71 VVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFP 134 (204)
Q Consensus 71 v~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (204)
..|+.++|+.|++....|++ +++.+..+++.. ++.+.++++++++ ..+..+.
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~~----~~~~~~el~~~~~-~~~~~~~ 54 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEE-------HQIPFEERNLFK----QPLTKEELKEILS-LTENGVE 54 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEecCC----CcchHHHHHHHHH-HhcCCHH
Confidence 35667999999976655554 234444444321 2467889999995 3444443
No 218
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=91.32 E-value=0.61 Score=31.07 Aligned_cols=49 Identities=14% Similarity=0.320 Sum_probs=31.6
Q ss_pred EEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCc
Q 028736 71 VVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKA 131 (204)
Q Consensus 71 v~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 131 (204)
..|..++|+.|++....|++. +..+..+.|.-+ +.+.+++++++.. .+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~------~~~~~~l~~~~~~-~~~ 50 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKE------PPTKEELKELLAK-LGL 50 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccC------CCCHHHHHHHHHh-cCC
Confidence 457779999999776555542 113555555433 4678899999843 353
No 219
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=90.82 E-value=0.7 Score=28.31 Aligned_cols=32 Identities=9% Similarity=0.158 Sum_probs=20.8
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
++.|..+|||.|.+....|.+ .++.+..++++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~ 34 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NGISYEEIPLG 34 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCcEEEECC
Confidence 456677999999977666553 24555555554
No 220
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=90.62 E-value=0.28 Score=34.36 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=31.0
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccc
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEF 133 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (204)
+..|..++|+.|++....|.+ +++.+..+++.. ++.+.+++.++++. .+..+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~-------~gi~~~~idi~~----~~~~~~eL~~~l~~-~~~g~ 53 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE-------HDIPFTERNIFS----SPLTIDEIKQILRM-TEDGT 53 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCcEEeeccC----ChhhHHHHHHHHHH-hcCCH
Confidence 345677999999975544433 234444443321 24678899999853 34443
No 221
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=89.96 E-value=2.6 Score=29.36 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=57.5
Q ss_pred cEEEEEEecc--CCCC-CH-HhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCC
Q 028736 67 KVLLVVNVAS--KCGL-TQ-SNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVN 142 (204)
Q Consensus 67 k~~lv~f~~t--~C~~-C~-~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 142 (204)
+.=+|.|... .|.. +. .....+.++.++++.+.+.++.+..+. ...+ . +.+|. .
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~--------~~~~---~-~~fgl----------~ 78 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA--------QLDL---E-EALNI----------G 78 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc--------cHHH---H-HHcCC----------C
Confidence 4556666543 3544 43 346678888888888777777776542 1122 2 22221 1
Q ss_pred CCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEe-cCCCCChhHHHHHHHHhhh
Q 028736 143 GKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVER-YAPTTSPLKIEKDIQNLLG 202 (204)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~-~~g~~~~~~~~~~l~~ll~ 202 (204)
+ ...|.+++++.++. ++. +.+..+.+.+.+-+++.++
T Consensus 79 ~----------------------~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 79 G----------------------FGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred c----------------------cCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHc
Confidence 1 11388889998776 666 7788899999998888775
No 222
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.34 E-value=0.16 Score=38.60 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=33.6
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
+++.+++.||+.||..|...-..+..+.+.. .+.+++.+..+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~ 57 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAE 57 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhh
Confidence 7799999999999999998777777777777 34677666543
No 223
>PRK10824 glutaredoxin-4; Provisional
Probab=88.80 E-value=1.5 Score=29.95 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=18.0
Q ss_pred CCcEEEEEEec----cCCCCCHHhHHHHHHH
Q 028736 65 RGKVLLVVNVA----SKCGLTQSNYKELNVL 91 (204)
Q Consensus 65 ~gk~~lv~f~~----t~C~~C~~~~~~l~~l 91 (204)
...+|||+--+ +|||+|.+....|++.
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 33566666554 5999999766666554
No 224
>PRK12559 transcriptional regulator Spx; Provisional
Probab=87.81 E-value=1.4 Score=30.81 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=30.6
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHh
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACT 127 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~ 127 (204)
+..|..++|+.|++....|.+. +..+.++.+.-+ +-+.++++++++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~~------~~s~~el~~~l~~ 48 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVSN------SMTVDELKSILRL 48 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeCC------cCCHHHHHHHHHH
Confidence 4467779999999765444432 113555555443 4689999999953
No 225
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=87.46 E-value=7.6 Score=26.95 Aligned_cols=40 Identities=13% Similarity=0.063 Sum_probs=33.4
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEe
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~ 106 (204)
..|.+||-|.-.|-|.|..+=..|.++..+..+ +.+|-+.
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~Iylv 61 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLV 61 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEE
Confidence 458999999999999999988899999988886 5555543
No 226
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=87.18 E-value=3.3 Score=34.64 Aligned_cols=38 Identities=11% Similarity=0.106 Sum_probs=32.9
Q ss_pred ccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhh
Q 028736 164 AIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 164 ~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 201 (204)
.+.-+|..|+|+..|+.+....|....+++...|.+.+
T Consensus 74 p~v~vPs~ffIg~sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 74 PYVSVPSIFFIGFSGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred ccccccceeeecCCCceeEEeeccccHHHHHHHHHHHH
Confidence 55556999999999999999999999999888887753
No 227
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=86.01 E-value=2.1 Score=28.67 Aligned_cols=48 Identities=6% Similarity=0.062 Sum_probs=32.0
Q ss_pred EEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcC
Q 028736 71 VVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFK 130 (204)
Q Consensus 71 v~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~ 130 (204)
..|..++|+.|++....|.+. +..+.++-+.-+ |-+.++++++++. .|
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~------p~s~~eL~~~l~~-~g 49 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKD------GLDAATLERWLAK-VG 49 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccC------CCCHHHHHHHHHH-hC
Confidence 467789999999766555443 123555555433 4689999999954 46
No 228
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=85.83 E-value=1.3 Score=27.97 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=33.5
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccce
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIF 136 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (204)
|+.|.-+.|+-|...-..|.++..+ .++.+..|+++. +++ +. ++|+..-|++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~---~~~~l~~vDI~~-------d~~----l~-~~Y~~~IPVl 53 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE---FPFELEEVDIDE-------DPE----LF-EKYGYRIPVL 53 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT---STCEEEEEETTT-------THH----HH-HHSCTSTSEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh---cCceEEEEECCC-------CHH----HH-HHhcCCCCEE
Confidence 6677889999999766666664443 347777777752 333 33 5677666666
No 229
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=85.48 E-value=1.5 Score=33.76 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.2
Q ss_pred eeEEECCCCcEEEecCCCCChhHHHHHH
Q 028736 170 TKFLVNKEGKVVERYAPTTSPLKIEKDI 197 (204)
Q Consensus 170 ~~~lid~~G~i~~~~~g~~~~~~~~~~l 197 (204)
.+|+||+.|+|++...|..+++++++.+
T Consensus 250 yV~L~D~s~kIRW~g~G~aTp~Eve~L~ 277 (287)
T KOG4614|consen 250 YVLLLDKSGKIRWQGFGTATPEEVEQLL 277 (287)
T ss_pred EEEEEccCceEEEeecCCCCHHHHHHHH
Confidence 5689999999999999999998766654
No 230
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=84.76 E-value=1.8 Score=30.37 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=32.1
Q ss_pred EEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccce
Q 028736 71 VVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIF 136 (204)
Q Consensus 71 v~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (204)
..|..++|+.|++...-|.+. + ..+.++-+.-+ +-+.++++++++. .|..+.-+
T Consensus 3 ~iY~~~~C~~crkA~~~L~~~----~-i~~~~~d~~~~------~~s~~eL~~~l~~-~~~~~~~l 56 (132)
T PRK13344 3 KIYTISSCTSCKKAKTWLNAH----Q-LSYKEQNLGKE------PLTKEEILAILTK-TENGIESI 56 (132)
T ss_pred EEEeCCCCHHHHHHHHHHHHc----C-CCeEEEECCCC------CCCHHHHHHHHHH-hCCCHHHh
Confidence 356679999999755433322 1 12444544433 4688999999954 45544433
No 231
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=83.85 E-value=11 Score=33.21 Aligned_cols=42 Identities=10% Similarity=0.026 Sum_probs=27.3
Q ss_pred CCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEE
Q 028736 62 SGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAF 105 (204)
Q Consensus 62 ~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v 105 (204)
..+++++.++.|+...|+.|.+....|+++. ++.++ +.+...
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~-i~~~~~ 403 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEK-LNSEAV 403 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCc-EEEEEe
Confidence 4467778888999888988986666555555 33332 444433
No 232
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=83.63 E-value=6.1 Score=28.64 Aligned_cols=32 Identities=13% Similarity=-0.064 Sum_probs=19.9
Q ss_pred cceeeEEECCCCcEE-EecCCCCChhHHHHHHH
Q 028736 167 WNFTKFLVNKEGKVV-ERYAPTTSPLKIEKDIQ 198 (204)
Q Consensus 167 ~~P~~~lid~~G~i~-~~~~g~~~~~~~~~~l~ 198 (204)
..|.+++++....-. +...+..+.+.+.+-|+
T Consensus 151 ~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 151 DLPALVIFDSNKGKYYYLPEGEITPESIEKFLN 183 (184)
T ss_dssp SSSEEEEEETTTSEEEE--SSCGCHHHHHHHHH
T ss_pred cCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhc
Confidence 349999999555433 33466667777766654
No 233
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=82.94 E-value=14 Score=30.34 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=24.5
Q ss_pred eeeEEECCCCcEEEecCCCCChhHHHHHHHHhhhcC
Q 028736 169 FTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLGSC 204 (204)
Q Consensus 169 P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~~~ 204 (204)
++.|++ ++|+++.. .|..+++.+.+-|-.++..|
T Consensus 114 ~SiyVf-kd~~~IEy-dG~~saDtLVeFl~dl~edP 147 (383)
T PF01216_consen 114 GSIYVF-KDGEVIEY-DGERSADTLVEFLLDLLEDP 147 (383)
T ss_dssp TEEEEE-ETTEEEEE--S--SHHHHHHHHHHHHSSS
T ss_pred CcEEEE-ECCcEEEe-cCccCHHHHHHHHHHhcccc
Confidence 566777 67888855 58889999999998887654
No 234
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=82.27 E-value=8.3 Score=28.91 Aligned_cols=40 Identities=8% Similarity=0.012 Sum_probs=35.0
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEe
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~ 106 (204)
+...||+-|+-+....|+..=.+|..+.+.+-+ ..+|-|+
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvn 122 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVN 122 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEe
Confidence 557889999999888999999999999999875 8888886
No 235
>PTZ00062 glutaredoxin; Provisional
Probab=80.14 E-value=6.2 Score=29.87 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=15.0
Q ss_pred CCcEEEEEEec----cCCCCCHHhHHHHH
Q 028736 65 RGKVLLVVNVA----SKCGLTQSNYKELN 89 (204)
Q Consensus 65 ~gk~~lv~f~~----t~C~~C~~~~~~l~ 89 (204)
..++++|+--+ ++||+|++....|+
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~ 139 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLN 139 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHH
Confidence 44566666553 57777775554444
No 236
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=79.44 E-value=0.9 Score=28.74 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=20.8
Q ss_pred eeeEEECCCCcEEEec-CCCCChhHHHHHHHHh
Q 028736 169 FTKFLVNKEGKVVERY-APTTSPLKIEKDIQNL 200 (204)
Q Consensus 169 P~~~lid~~G~i~~~~-~g~~~~~~~~~~l~~l 200 (204)
|.+.++|.+|+.+.+. ....+.+++.+.|++-
T Consensus 43 P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 43 PELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp -EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 9999999999987764 3345788888887654
No 237
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=79.14 E-value=30 Score=28.68 Aligned_cols=98 Identities=11% Similarity=0.163 Sum_probs=55.0
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCC--CeEEEEEeCCCCCCCCCCCHHHHHHHHH------------hhcC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQ--DFEVLAFPCNQFAGQEPGSNEEIQEVAC------------TMFK 130 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~--~~~~i~v~~d~~~~~~~~~~~~~~~~~~------------~~~~ 130 (204)
.|+|++|+|. +.+.+++..+.++.+ ...+..|+.. +.+..+.++.|.+ ++ |
T Consensus 304 ~~~P~liF~p---------~I~~~eq~a~~lk~~~~~~~i~~Vhs~-----d~~R~EkV~~fR~G~~~lLiTTTILER-G 368 (441)
T COG4098 304 TGRPVLIFFP---------EIETMEQVAAALKKKLPKETIASVHSE-----DQHRKEKVEAFRDGKITLLITTTILER-G 368 (441)
T ss_pred cCCcEEEEec---------chHHHHHHHHHHHhhCCccceeeeecc-----CccHHHHHHHHHcCceEEEEEeehhhc-c
Confidence 6789999886 455556655555432 2555666643 2456777887743 44 8
Q ss_pred ccccceee--ccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCC
Q 028736 131 AEFPIFDK--IDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTT 188 (204)
Q Consensus 131 ~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~ 188 (204)
.+||.+.- .+.......+. .-.+..++.|... =-|+|.+...|.|..
T Consensus 369 VTfp~vdV~Vlgaeh~vfTes---aLVQIaGRvGRs~--------~~PtGdv~FFH~G~s 417 (441)
T COG4098 369 VTFPNVDVFVLGAEHRVFTES---ALVQIAGRVGRSL--------ERPTGDVLFFHYGKS 417 (441)
T ss_pred cccccceEEEecCCcccccHH---HHHHHhhhccCCC--------cCCCCcEEEEeccch
Confidence 88886521 22233222221 1122233333222 238999999998863
No 238
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=78.31 E-value=32 Score=27.34 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=31.6
Q ss_pred CCcccceEEecCCCCeeecCCCC--CcEEEEEEeccCCCCCHHhHHHHHH-HHHHhc--CCCeEEEEEeCC
Q 028736 43 PKSIYDFTVKDIRGNDVSLSGYR--GKVLLVVNVASKCGLTQSNYKELNV-LYEKYK--NQDFEVLAFPCN 108 (204)
Q Consensus 43 ~~~~p~~~l~~~~g~~~~l~~~~--gk~~lv~f~~t~C~~C~~~~~~l~~-l~~~~~--~~~~~~i~v~~d 108 (204)
-..+|-|+++|.+|+++-.+.-. ++.+...|+ |+.....+-+ +..+.. ..+++|+.|+++
T Consensus 72 L~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~ 136 (274)
T PF04278_consen 72 LAGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF------SQQDAEAFLAQLKKSNPELASGAKVVPVSLG 136 (274)
T ss_dssp HTTSEEEEEE-TT--B-----TTS--SEEEEEES-------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHH
T ss_pred hcCceEEEEECCCCCEEEeccCCCCCceEEEEEe------cHHHHHHHHHHHhhhCccccCceEEEEecHH
Confidence 34689999999999998887765 567766666 3555554433 333322 246999999864
No 239
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=77.30 E-value=23 Score=25.09 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=31.2
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccce
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIF 136 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (204)
++.+..+.|.=|..-+..|+ .++++|=.+..| +-..+++ ++|+++.+.
T Consensus 28 ~~vyksPnCGCC~~w~~~mk-------~~Gf~Vk~~~~~--------d~~alK~----~~gIp~e~~ 75 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMK-------ANGFEVKVVETD--------DFLALKR----RLGIPYEMQ 75 (149)
T ss_pred EEEEeCCCCccHHHHHHHHH-------hCCcEEEEeecC--------cHHHHHH----hcCCChhhc
Confidence 56677899999996555554 457888777654 3444443 357666543
No 240
>PRK10026 arsenate reductase; Provisional
Probab=77.04 E-value=23 Score=25.08 Aligned_cols=50 Identities=8% Similarity=0.274 Sum_probs=33.1
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCc
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKA 131 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 131 (204)
+..|+.+.|..|++...-|++. ...+.++-+--+ +-+.++++.+++ ..|.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~~~------ppt~~eL~~~l~-~~g~ 53 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYLET------PPTRDELVKLIA-DMGI 53 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeeeCC------CcCHHHHHHHHH-hCCC
Confidence 4466779999999776655543 123555555444 458999999995 4464
No 241
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=76.66 E-value=6.6 Score=27.50 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=24.7
Q ss_pred eeeEEECCCCcEEEecCCCC-ChhHHHHHHHHhhh
Q 028736 169 FTKFLVNKEGKVVERYAPTT-SPLKIEKDIQNLLG 202 (204)
Q Consensus 169 P~~~lid~~G~i~~~~~g~~-~~~~~~~~l~~ll~ 202 (204)
|.+-++|.||++........ +.+.+++.++.-++
T Consensus 118 P~l~llDadgk~kE~lsI~kWntdtl~eff~ekle 152 (154)
T KOG3384|consen 118 PVLKLLDADGKHKESLSIDKWNTDTLEEFFREKLE 152 (154)
T ss_pred CeeEeecCCCCccceeeecccChHHHHHHHHHHhc
Confidence 88999999999987654332 66777777765443
No 242
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=75.86 E-value=23 Score=24.47 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=22.4
Q ss_pred HHhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 028736 82 QSNYKELNVLYEKYKNQDFEVLAFPCNQ 109 (204)
Q Consensus 82 ~~~~~~l~~l~~~~~~~~~~~i~v~~d~ 109 (204)
-.++-++....+.++++++.+...++..
T Consensus 23 d~eL~~~a~~~~~Lk~~gv~v~RyNL~~ 50 (123)
T PF06953_consen 23 DPELVRFAADLDWLKEQGVEVERYNLAQ 50 (123)
T ss_dssp -HHHHHHHHHHHHHHHTT-EEEEEETTT
T ss_pred CHHHHHHHHHHHHHHhCCceEEEEcccc
Confidence 5688888889999988899999998864
No 243
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=74.98 E-value=11 Score=28.40 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=39.0
Q ss_pred cEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccce
Q 028736 67 KVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIF 136 (204)
Q Consensus 67 k~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (204)
.-.+..|.-..|+.|...+..+.. . ...+.+..|... .+.+.++.|+..+ +++-..+
T Consensus 109 ~~rlalFvkd~C~~C~~~~~~l~a---~--~~~~Diylvgs~-------~dD~~Ir~WA~~~-~Idp~~V 165 (200)
T TIGR03759 109 GGRLALFVKDDCVACDARVQRLLA---D--NAPLDLYLVGSQ-------GDDERIRQWANRH-QIDPAKV 165 (200)
T ss_pred CCeEEEEeCCCChHHHHHHHHHhc---C--CCceeEEEecCC-------CCHHHHHHHHHHc-CCCHHHe
Confidence 456667777999999988777733 2 234555555432 4789999999665 8776655
No 244
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=74.80 E-value=3.4 Score=33.60 Aligned_cols=42 Identities=19% Similarity=0.348 Sum_probs=36.3
Q ss_pred cccccceeeEEECC-CCcEEEecCCCCChhHHHHHHHHhhhcC
Q 028736 163 DAIKWNFTKFLVNK-EGKVVERYAPTTSPLKIEKDIQNLLGSC 204 (204)
Q Consensus 163 ~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~ll~~~ 204 (204)
|++..+|+..+||| -|+-+.++.|...++.+..+|+..+.+|
T Consensus 150 y~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~~ 192 (356)
T KOG1364|consen 150 YHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDSC 192 (356)
T ss_pred eeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhcC
Confidence 47777899999998 7888888988888999999999988764
No 245
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=72.83 E-value=6.5 Score=26.92 Aligned_cols=55 Identities=11% Similarity=0.220 Sum_probs=34.1
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccce
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIF 136 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (204)
+..|+.+.|..|+....-|++.-- .++++-+.-+ +-+.++++++++. .|..+.-+
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi-----~~~~~~y~~~------~~s~~eL~~~l~~-~g~~~~~l 57 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGI-----EYTFIDYLKT------PPSREELKKILSK-LGDGVEEL 57 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCC-----CcEEEEeecC------CCCHHHHHHHHHH-cCccHHHH
Confidence 445778899999966655443221 2455555443 3588999999954 46555443
No 246
>PRK13620 psbV cytochrome c-550; Provisional
Probab=71.77 E-value=0.45 Score=35.69 Aligned_cols=64 Identities=25% Similarity=0.235 Sum_probs=34.8
Q ss_pred ecCCCCeeecCCC---CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHh
Q 028736 52 KDIRGNDVSLSGY---RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACT 127 (204)
Q Consensus 52 ~~~~g~~~~l~~~---~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~ 127 (204)
.|.+|+.+.++.- +||-+ | ..||..|=..- -.+....... +...+++... .+++.+.+..|+++
T Consensus 90 ln~~G~tvtfS~eq~~~GkqL---F-~~~Ca~CHVgG--~Tktnp~vgp-dLt~LaaAtp-----pRdn~e~Lv~wLkd 156 (215)
T PRK13620 90 LNPQGDNVTLSLKQVAEGKQL---F-AYACGQCHVGG--ITKTDPNVGL-DPEALALATP-----PRDSVESLVDYLHN 156 (215)
T ss_pred eCCCCCeecCCHHHHHHHHHH---H-HhhhhhccCCC--CCCCCCCCCC-CHHHHhccCC-----CCCCHHHHHHHHhC
Confidence 4678888888774 67654 2 78999987200 0000001111 2333333322 24788899999853
No 247
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=70.48 E-value=7.3 Score=28.54 Aligned_cols=41 Identities=17% Similarity=0.196 Sum_probs=32.8
Q ss_pred EEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 028736 69 LLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 109 (204)
Q Consensus 69 ~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~ 109 (204)
+|.+|+..-||.|-...+.+.++.+++.+-.+....+.+.+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 46788889999999999999999999954456666666553
No 248
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=69.57 E-value=15 Score=25.64 Aligned_cols=42 Identities=14% Similarity=-0.012 Sum_probs=33.0
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPC 107 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~ 107 (204)
..|.++|-|.-.|-|.|...=..|.+..++.++- ..+..|.+
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi 60 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDI 60 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEET
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEc
Confidence 4699999999999999999999999999988862 44444443
No 249
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=68.31 E-value=45 Score=24.51 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=52.1
Q ss_pred CCCCeeecCCCCCcEEEEEEeccCCCC-CHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCcc
Q 028736 54 IRGNDVSLSGYRGKVLLVVNVASKCGL-TQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAE 132 (204)
Q Consensus 54 ~~g~~~~l~~~~gk~~lv~f~~t~C~~-C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 132 (204)
.++..+.+..+. -..++.-.++-|.. |. .-..+..+.++++=+...+|.|+-++ |.-.+-+++|++++....
T Consensus 23 l~~i~v~~e~we-~~~~~~~~~~~~~i~~a-~~~eid~l~~e~Gyk~~Dvvsv~~~~-----pk~del~akF~~EH~H~d 95 (181)
T COG1791 23 LSKIEVSFERWE-ATALIKHGAEKEHIIDA-YETEIDRLIRERGYKNRDVVSVSPSN-----PKLDELRAKFLQEHLHTD 95 (181)
T ss_pred cccceeEhhhhh-hccccccCcchhhhHhh-HHHHHHHHHHhhCCceeeEEEeCCCC-----ccHHHHHHHHHHHhccCC
Confidence 345555655554 12222333777877 54 77788899999887789999998764 567788999998886665
Q ss_pred ccce
Q 028736 133 FPIF 136 (204)
Q Consensus 133 ~~~~ 136 (204)
..+.
T Consensus 96 ~EvR 99 (181)
T COG1791 96 DEVR 99 (181)
T ss_pred ceEE
Confidence 5543
No 250
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=68.16 E-value=50 Score=24.99 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=28.8
Q ss_pred EEEEe-ccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 028736 70 LVVNV-ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQ 113 (204)
Q Consensus 70 lv~f~-~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~ 113 (204)
||+.| +--|..|+---..|.++..+ .++..++..+|-|+.-
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVDYWDyl 42 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR---PDVIALAFHVDYWDYL 42 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-STT-SS
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCCcccCC
Confidence 45544 45999999998999999998 3699999999977554
No 251
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=67.66 E-value=13 Score=25.07 Aligned_cols=51 Identities=12% Similarity=0.236 Sum_probs=31.6
Q ss_pred EEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccc
Q 028736 71 VVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEF 133 (204)
Q Consensus 71 v~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (204)
..|..+.|..|++....|++. +..++++-+.-+ +-+.+++.++++ ..|...
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~------~~t~~el~~~l~-~~~~~~ 52 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYLKT------PPTAAELRELLA-KLGISP 52 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecccC------CcCHHHHHHHHH-HcCCCH
Confidence 356678999999765444432 113555555433 458999999995 446433
No 252
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=66.77 E-value=25 Score=27.12 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=29.5
Q ss_pred cEEEEEEec-cCCCCCHHhHHHHHHHHHHhcCC-CeEEEE
Q 028736 67 KVLLVVNVA-SKCGLTQSNYKELNVLYEKYKNQ-DFEVLA 104 (204)
Q Consensus 67 k~~lv~f~~-t~C~~C~~~~~~l~~l~~~~~~~-~~~~i~ 104 (204)
+.+-|++|+ .=||.|-..-+.|.++..++... .++++.
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w 43 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRW 43 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEe
Confidence 456666666 58999999999999999999854 455544
No 253
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=63.77 E-value=23 Score=25.99 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=46.5
Q ss_pred CC-cEEEEEEeccCCCC-CHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccc
Q 028736 65 RG-KVLLVVNVASKCGL-TQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPI 135 (204)
Q Consensus 65 ~g-k~~lv~f~~t~C~~-C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (204)
+| |-+++++=.|=-|- -+.-.|.+.++..++++.|+.++-+|- .++..++.+. ++++.+|-.
T Consensus 26 ~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSN--------n~e~RV~~~~-~~l~v~fi~ 89 (175)
T COG2179 26 HGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSN--------NKESRVARAA-EKLGVPFIY 89 (175)
T ss_pred cCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeC--------CCHHHHHhhh-hhcCCceee
Confidence 55 67777777665554 566788999999999999999998884 3677777777 556777643
No 254
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=60.49 E-value=13 Score=26.25 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=22.6
Q ss_pred cccccceeeEEECCCCcEEEecCCCCChhHHHHHHHH
Q 028736 163 DAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQN 199 (204)
Q Consensus 163 ~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ 199 (204)
.+|.++|+++| ||+.+ .+..+.+++.+.|++
T Consensus 132 ~~i~~tPt~~i---nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 132 LGITGTPTFFI---NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp HT-SSSSEEEE---TTCEE---ETTTSHHHHHHHHHH
T ss_pred cCCccccEEEE---CCEEe---CCCCCHHHHHHHHcC
Confidence 48889999777 78885 455678888887764
No 255
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=60.15 E-value=43 Score=26.45 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=34.4
Q ss_pred EEecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhh
Q 028736 50 TVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTM 128 (204)
Q Consensus 50 ~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~ 128 (204)
+++|..| ++++...-.++|++++-+ .+.+...++.-|+|.-|+ +...+.+-..++
T Consensus 35 tVkde~G-t~tv~k~PKRVVVLE~SF----------------aDaLaal~v~PVGIADDn-------k~krI~k~Vr~k 89 (310)
T COG4594 35 TVKDELG-TFTVPKTPKRVVVLELSF----------------ADALAALGVTPVGIADDN-------KKKRILKDVRDK 89 (310)
T ss_pred eeeccCC-ceecCCCCceEEEEEecH----------------HHHHHHcCCeeeeeccCc-------hhhhhhHHHHhh
Confidence 4788888 667777666888888764 122333478888887543 444555544443
No 256
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=59.95 E-value=30 Score=23.45 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=31.2
Q ss_pred EEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcC
Q 028736 71 VVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFK 130 (204)
Q Consensus 71 v~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~ 130 (204)
..|..+.|+.|++...-|.+. + ..+.++.+.-+ +-+.++++++++ +.|
T Consensus 3 ~iy~~p~C~~crkA~~~L~~~----g-i~~~~~d~~~~------p~s~~eL~~~l~-~~g 50 (113)
T cd03033 3 IFYEKPGCANNARQKALLEAA----G-HEVEVRDLLTE------PWTAETLRPFFG-DLP 50 (113)
T ss_pred EEEECCCCHHHHHHHHHHHHc----C-CCcEEeehhcC------CCCHHHHHHHHH-HcC
Confidence 456678999999665444432 1 23666666544 458999999996 334
No 257
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=59.48 E-value=23 Score=20.06 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=20.6
Q ss_pred EEECCCCcEEEecCCCCCh--hHHHHHHHHhh
Q 028736 172 FLVNKEGKVVERYAPTTSP--LKIEKDIQNLL 201 (204)
Q Consensus 172 ~lid~~G~i~~~~~g~~~~--~~~~~~l~~ll 201 (204)
|.|+|||+|.....|-.-. .++-+.|+++|
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 7899999999987664432 24555565555
No 258
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=59.46 E-value=20 Score=29.60 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=18.0
Q ss_pred ccceEEecCCCCeeecCCCCCcEEEE
Q 028736 46 IYDFTVKDIRGNDVSLSGYRGKVLLV 71 (204)
Q Consensus 46 ~p~~~l~~~~g~~~~l~~~~gk~~lv 71 (204)
.-.++++|..|+.+++..--.|.+.+
T Consensus 41 ~~pvtitD~~G~~Vti~~~p~RIVsL 66 (359)
T PRK09534 41 SFPVTETDATGTEITLDERPERVVTL 66 (359)
T ss_pred CCcEEEEeCCCCEEEecCCCCeEEec
Confidence 34688899999888887754455443
No 259
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=58.95 E-value=31 Score=23.27 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=32.2
Q ss_pred EEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCcc
Q 028736 71 VVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAE 132 (204)
Q Consensus 71 v~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 132 (204)
..|..+.|..|++....|++. +..++++-+.-+ +-+.++++++++. .|..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~------p~t~~el~~~l~~-~g~~ 51 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLKN------PPTKSELEAIFAK-LGLT 51 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccCC------CcCHHHHHHHHHH-cCCc
Confidence 356678999999766665542 123455554433 4689999999954 4643
No 260
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=58.82 E-value=6.9 Score=32.99 Aligned_cols=32 Identities=6% Similarity=0.170 Sum_probs=20.5
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
|+.|..+|||+|.+.-..|.+ .++..-.|.++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~gi~~~~idi~ 35 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------NDIPFTQISLD 35 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCeEEEECC
Confidence 567888999999965554444 24444445544
No 261
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=58.75 E-value=53 Score=22.07 Aligned_cols=31 Identities=6% Similarity=-0.041 Sum_probs=20.3
Q ss_pred eeeEEECCCCcEEEecCCCC-ChhHHHHHHHHh
Q 028736 169 FTKFLVNKEGKVVERYAPTT-SPLKIEKDIQNL 200 (204)
Q Consensus 169 P~~~lid~~G~i~~~~~g~~-~~~~~~~~l~~l 200 (204)
|.+.+++.++ -.+...+.. +.+.+.+-+++.
T Consensus 79 P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 79 PVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 8888888766 444445556 667777666553
No 262
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=58.60 E-value=23 Score=19.99 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=23.2
Q ss_pred eeeEEECCCCcEEEecCCCCChhHHHHHHHHhh
Q 028736 169 FTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 169 P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 201 (204)
.++.|.+.||+|+....+..+....+..|+.+-
T Consensus 6 ~~f~L~a~ng~viasse~Y~sk~~a~~~I~~Vk 38 (49)
T PF07411_consen 6 FRFRLKAGNGEVIASSEGYSSKADAEKGIESVK 38 (49)
T ss_dssp EEEEEE-TTS-EEEEBEEBSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCEEEecCCcCCHHHHHHHHHHHH
Confidence 466789999999998777777776666666553
No 263
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=57.66 E-value=38 Score=20.59 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=22.6
Q ss_pred CCCCeeecCCCCCcEEEEEEec--cCCCCCHHhH-HHHHH
Q 028736 54 IRGNDVSLSGYRGKVLLVVNVA--SKCGLTQSNY-KELNV 90 (204)
Q Consensus 54 ~~g~~~~l~~~~gk~~lv~f~~--t~C~~C~~~~-~~l~~ 90 (204)
.+|..+.+-+.++..+.|.|-. ..||....++ ..+++
T Consensus 14 ~dGGdv~lv~v~~~~V~V~l~GaC~gC~~s~~Tl~~~Ie~ 53 (68)
T PF01106_consen 14 SDGGDVELVDVDDGVVYVRLTGACSGCPSSDMTLKQGIEQ 53 (68)
T ss_dssp HTTEEEEEEEEETTEEEEEEESSCCSSCCHHHHHHHHHHH
T ss_pred hcCCcEEEEEecCCEEEEEEEeCCCCCCCHHHHHHHHHHH
Confidence 3777888888877777777764 3444444444 34444
No 264
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=55.11 E-value=17 Score=26.61 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.7
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhc
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYK 96 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~ 96 (204)
+.+|+...||.|-...+.|.++.++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 556777899999999999999999984
No 265
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=52.65 E-value=88 Score=22.74 Aligned_cols=102 Identities=12% Similarity=0.151 Sum_probs=59.9
Q ss_pred cccceEEecCCCCeeecCCCCC-cEEEEEEeccCC-------CCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCC
Q 028736 45 SIYDFTVKDIRGNDVSLSGYRG-KVLLVVNVASKC-------GLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPG 116 (204)
Q Consensus 45 ~~p~~~l~~~~g~~~~l~~~~g-k~~lv~f~~t~C-------~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~ 116 (204)
..|..++.+.+--+..+-.++| |-+|++ -+.| ..-+.+++.+++.+..|+++++.+++=+... .+-|
T Consensus 21 ~~Ph~~vptf~~ip~~I~~~~~ikavVlD--KDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~---~~~D 95 (190)
T KOG2961|consen 21 VLPHVSVPTFRYIPWEILKRKGIKAVVLD--KDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGL---TEYD 95 (190)
T ss_pred eccccccCccccCCcchhhccCceEEEEc--CCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcCc---cccC
Confidence 3566677776666777777777 776664 2334 2256789999999999999888877654332 1223
Q ss_pred CHHHHHHHHHhhcCccccceeeccCCCCCchhHHHHH
Q 028736 117 SNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFL 153 (204)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 153 (204)
......+.+++ ....|++...-....-..+.+.|+
T Consensus 96 ~d~s~Ak~le~--k~gIpVlRHs~kKP~ct~E~~~y~ 130 (190)
T KOG2961|consen 96 HDDSKAKALEA--KIGIPVLRHSVKKPACTAEEVEYH 130 (190)
T ss_pred CchHHHHHHHH--hhCCceEeecccCCCccHHHHHHH
Confidence 33344444534 456676643222222234455544
No 266
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=52.52 E-value=1.2e+02 Score=24.70 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=34.3
Q ss_pred eEEecCCCCeeecCCCCCcEEEEEEecc----CCCCCHHhHHHHHHHHHHhcC
Q 028736 49 FTVKDIRGNDVSLSGYRGKVLLVVNVAS----KCGLTQSNYKELNVLYEKYKN 97 (204)
Q Consensus 49 ~~l~~~~g~~~~l~~~~gk~~lv~f~~t----~C~~C~~~~~~l~~l~~~~~~ 97 (204)
+++.|-+=..+..+..++-.+++.|.|+ .|+.|.....+++-+.+.+..
T Consensus 43 I~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~ 95 (331)
T KOG2603|consen 43 IRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRY 95 (331)
T ss_pred EEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhc
Confidence 4554444444444556766777778774 799999999888888888764
No 267
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=52.12 E-value=27 Score=23.29 Aligned_cols=52 Identities=19% Similarity=0.191 Sum_probs=27.6
Q ss_pred EeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccce
Q 028736 73 NVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIF 136 (204)
Q Consensus 73 f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (204)
|..+.|..|+....-|.+ +++.+..+++- .++-+.+++.++++. .|..+.-+
T Consensus 1 Y~~~~C~t~rka~~~L~~-------~gi~~~~~d~~----k~p~s~~el~~~l~~-~~~~~~~l 52 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE-------NGIEYEFIDYK----KEPLSREELRELLSK-LGNGPDDL 52 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH-------TT--EEEEETT----TS---HHHHHHHHHH-HTSSGGGG
T ss_pred CcCCCCHHHHHHHHHHHH-------cCCCeEeehhh----hCCCCHHHHHHHHHH-hcccHHHH
Confidence 345778888865555543 34555555543 134689999999954 47655544
No 268
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=51.81 E-value=91 Score=22.69 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=44.8
Q ss_pred CCCcccceEEec-CCCCeeecCCC---CCcEEEEEEeccCCCC-CHHhHHHHHHHHH-------HhcCC------CeEEE
Q 028736 42 APKSIYDFTVKD-IRGNDVSLSGY---RGKVLLVVNVASKCGL-TQSNYKELNVLYE-------KYKNQ------DFEVL 103 (204)
Q Consensus 42 ~~~~~p~~~l~~-~~g~~~~l~~~---~gk~~lv~f~~t~C~~-C~~~~~~l~~l~~-------~~~~~------~~~~i 103 (204)
+|..+|+..++. .||+++.+.+. .|++.|+.|-...-.. +...+..+.+..+ +|... -++++
T Consensus 32 ~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~~~~~ 111 (169)
T PF07976_consen 32 PGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSVFDVL 111 (169)
T ss_dssp TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSSEEEE
T ss_pred CccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCeeEEE
Confidence 899999999988 69999999884 7899999998764444 7666666666443 44432 28888
Q ss_pred EEeCC
Q 028736 104 AFPCN 108 (204)
Q Consensus 104 ~v~~d 108 (204)
.|...
T Consensus 112 ~I~~~ 116 (169)
T PF07976_consen 112 LIHSS 116 (169)
T ss_dssp EEESS
T ss_pred EEecC
Confidence 88754
No 269
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=50.96 E-value=16 Score=22.00 Aligned_cols=31 Identities=10% Similarity=0.076 Sum_probs=18.8
Q ss_pred EEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeC
Q 028736 72 VNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPC 107 (204)
Q Consensus 72 ~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~ 107 (204)
.|.+.|||.|.+-.-.+... +..++.+.|+.
T Consensus 3 ly~~~~~p~~~rv~~~L~~~-----gl~~e~~~v~~ 33 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA-----GITVELREVEL 33 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc-----CCCcEEEEeCC
Confidence 45678999998665444432 22466666653
No 270
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=49.81 E-value=34 Score=23.73 Aligned_cols=45 Identities=13% Similarity=0.086 Sum_probs=24.5
Q ss_pred HHHHhcCCCeEEEEEeCCCCCCCC-------CCCHHHHHHHHHhhcCccccce
Q 028736 91 LYEKYKNQDFEVLAFPCNQFAGQE-------PGSNEEIQEVACTMFKAEFPIF 136 (204)
Q Consensus 91 l~~~~~~~~~~~i~v~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 136 (204)
..+++.+++..++.+|-.+....+ ..+-....+|+.+ ++.+|.-+
T Consensus 32 ~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k-~~ipYd~l 83 (126)
T TIGR01689 32 KLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQ-HNVPYDEI 83 (126)
T ss_pred HHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHH-cCCCCceE
Confidence 333443457888888744311100 0111367888854 58888655
No 271
>PRK13617 psbV cytochrome c-550; Provisional
Probab=48.99 E-value=5.9 Score=28.99 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=19.4
Q ss_pred ecCCCCeeecCCC---CCcEEEEEEeccCCCCCH
Q 028736 52 KDIRGNDVSLSGY---RGKVLLVVNVASKCGLTQ 82 (204)
Q Consensus 52 ~~~~g~~~~l~~~---~gk~~lv~f~~t~C~~C~ 82 (204)
.|..|+++.++.- +||-+ | ...|..|-
T Consensus 45 ~~~~g~~~~~s~~~~~~G~~~---F-~~~C~~CH 74 (170)
T PRK13617 45 ADPSGSQVTFSESEIKAGRKV---F-NTSCGTCH 74 (170)
T ss_pred cCCCCCeEEeCHHHHHHHHHH---H-Hcchhhhc
Confidence 4678888888773 56555 3 77898886
No 272
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=48.61 E-value=44 Score=22.44 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=40.7
Q ss_pred CeeecCCCCC-cEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC---CCCCHHHHHHHHHhhcC
Q 028736 57 NDVSLSGYRG-KVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQ---EPGSNEEIQEVACTMFK 130 (204)
Q Consensus 57 ~~~~l~~~~g-k~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~---~~~~~~~~~~~~~~~~~ 130 (204)
+.-.++++.+ ..-+|-|+ .|+.|+ -..+....+++.+.++..|-++.=-..+. .=...+.+++.+++++|
T Consensus 26 r~g~F~~y~~~~~elvgf~--~CgGCp--g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~g 99 (107)
T PF08821_consen 26 RKGAFARYDDEDVELVGFF--TCGGCP--GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFG 99 (107)
T ss_pred ccCccccCCCCCeEEEEEe--eCCCCC--hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhC
Confidence 3344566654 56677776 577777 66666677777777777776542211100 11236777788866543
No 273
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=48.05 E-value=72 Score=22.07 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=30.4
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHh
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACT 127 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~ 127 (204)
+..|..+.|..|++...-|.+. +..++++.+--+ +-+.+++++|++.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~-----gi~~~~~d~~~~------p~t~~eL~~~l~~ 49 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS-----GHDVEVQDILKE------PWHADTLRPYFGN 49 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeccCC------CcCHHHHHHHHHH
Confidence 4566778999999766555443 113555554333 4589999999954
No 274
>PRK10853 putative reductase; Provisional
Probab=46.05 E-value=64 Score=21.98 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=31.4
Q ss_pred EEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCc
Q 028736 70 LVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKA 131 (204)
Q Consensus 70 lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 131 (204)
+..|..+.|..|++...-|.+. ...+.++.+--+ +-+.+++++|+.+ .|.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~d~~k~------p~s~~eL~~~l~~-~g~ 51 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-----GIDYRFHDYRVD------GLDSELLQGFIDE-LGW 51 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-----CCCcEEeehccC------CcCHHHHHHHHHH-cCH
Confidence 3456678999999766555542 112444444332 4589999999954 463
No 275
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=45.93 E-value=18 Score=22.79 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=20.3
Q ss_pred eEEECCCCcEEEecCC-----CCChhHHHHHHHHhhh
Q 028736 171 KFLVNKEGKVVERYAP-----TTSPLKIEKDIQNLLG 202 (204)
Q Consensus 171 ~~lid~~G~i~~~~~g-----~~~~~~~~~~l~~ll~ 202 (204)
.|.|++||.|..-+.| ..+.+++++.|++.++
T Consensus 32 ~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~ 68 (82)
T PF02563_consen 32 EYTVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQ 68 (82)
T ss_dssp SEE--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHT
T ss_pred ceEECCCCcEeecccceEEECCCCHHHHHHHHHHHHH
Confidence 4889999999875433 4467788888877654
No 276
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=44.22 E-value=33 Score=22.15 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=22.8
Q ss_pred eeEEECCCCcEEEecCCCCChhHHHHHHHHhhh
Q 028736 170 TKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLG 202 (204)
Q Consensus 170 ~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 202 (204)
+-|++| ||+++++..++..-.++...+..+.+
T Consensus 26 hgflfd-dg~~vw~e~~d~~w~rl~~vv~al~s 57 (111)
T PF02484_consen 26 HGFLFD-DGDIVWSEDDDETWNRLCDVVNALIS 57 (111)
T ss_pred cceEec-CCcEEEecCChHHHHHHHHHHHHHHh
Confidence 448887 79999998777655566666655543
No 277
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=43.72 E-value=1.3e+02 Score=22.04 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=27.5
Q ss_pred EEeccCCCCCHHhHHHHHHHHHHhcC---CCeEEEEEeCCC
Q 028736 72 VNVASKCGLTQSNYKELNVLYEKYKN---QDFEVLAFPCNQ 109 (204)
Q Consensus 72 ~f~~t~C~~C~~~~~~l~~l~~~~~~---~~~~~i~v~~d~ 109 (204)
+|+..-||.|-.-.+.|.++.++++. -.+....+.+++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L~~ 43 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFELNP 43 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeeeCC
Confidence 45557899999999999999999963 234444555543
No 278
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=43.50 E-value=98 Score=20.68 Aligned_cols=35 Identities=9% Similarity=-0.014 Sum_probs=23.8
Q ss_pred eeeEEECCCCcEEEe-cCCCCChhHHHHHHHHhhhc
Q 028736 169 FTKFLVNKEGKVVER-YAPTTSPLKIEKDIQNLLGS 203 (204)
Q Consensus 169 P~~~lid~~G~i~~~-~~g~~~~~~~~~~l~~ll~~ 203 (204)
|.+.+++-++.-.+. ..+..+++.+.+-+++.++.
T Consensus 75 P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~G 110 (111)
T cd03072 75 PVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSG 110 (111)
T ss_pred CEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhcC
Confidence 777777775533444 45667888888888887653
No 279
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.47 E-value=74 Score=21.55 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=16.3
Q ss_pred CCeeecCCC--CCcEEEEEEeccCCC
Q 028736 56 GNDVSLSGY--RGKVLLVVNVASKCG 79 (204)
Q Consensus 56 g~~~~l~~~--~gk~~lv~f~~t~C~ 79 (204)
|-..++..+ +|+-.-+.|.|+.--
T Consensus 53 ~y~y~i~ayn~~Gkkk~v~f~a~~~l 78 (113)
T COG5294 53 GYEYTITAYNKNGKKKEVKFTATHNL 78 (113)
T ss_pred cceeeehhhccCCcEEEEEEEecCcC
Confidence 444556655 778888888887653
No 280
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=43.28 E-value=1.3e+02 Score=21.89 Aligned_cols=49 Identities=14% Similarity=0.044 Sum_probs=33.2
Q ss_pred CCcccceEEec-CCCCeeecCCC---CCcEEEEEEeccC-CCCCHHhHHHHHHH
Q 028736 43 PKSIYDFTVKD-IRGNDVSLSGY---RGKVLLVVNVASK-CGLTQSNYKELNVL 91 (204)
Q Consensus 43 ~~~~p~~~l~~-~~g~~~~l~~~---~gk~~lv~f~~t~-C~~C~~~~~~l~~l 91 (204)
|.-+|++.++. .||.++.+.+. -|++-++.|-..- ++.....+..+.+.
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~~~~~~~~l~~~~~~ 54 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIAPAQQKSRLTQLCDA 54 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCCchhHHHHHHHHHHH
Confidence 34567777777 58999988774 7799999998753 33355444444443
No 281
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=43.24 E-value=28 Score=28.23 Aligned_cols=31 Identities=13% Similarity=0.102 Sum_probs=23.7
Q ss_pred ccceEEecCCCCeeecCCC-CCcEEEEEEecc
Q 028736 46 IYDFTVKDIRGNDVSLSGY-RGKVLLVVNVAS 76 (204)
Q Consensus 46 ~p~~~l~~~~g~~~~l~~~-~gk~~lv~f~~t 76 (204)
.|..-++|.+|++++.+++ -|.++.+.|-+.
T Consensus 100 ~pk~La~D~~GnPIKASdL~vnSp~~~lfeyP 131 (321)
T TIGR03171 100 FPKSLLVDSSGNPIKASSIPVNSPIITIFEYP 131 (321)
T ss_pred CCceEEecCCCCeeeHHHccCCCcccccccCc
Confidence 5778899999999999998 446666555544
No 282
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=43.01 E-value=30 Score=25.05 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=41.7
Q ss_pred EecCCCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHh
Q 028736 51 VKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACT 127 (204)
Q Consensus 51 l~~~~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~ 127 (204)
+.|+|| +++.+|..|...-+ ...+|+. +...+++.++.++|..++=++.-+ ..-....+.|+..
T Consensus 3 vsDIDG-TiT~SD~~G~i~~~-~G~d~~h------~g~~~l~~~i~~~GY~ilYlTaRp-----~~qa~~Tr~~L~~ 66 (157)
T PF08235_consen 3 VSDIDG-TITKSDVLGHILPI-LGKDWTH------PGAAELYRKIADNGYKILYLTARP-----IGQANRTRSWLAQ 66 (157)
T ss_pred EEeccC-CcCccchhhhhhhc-cCchhhh------hcHHHHHHHHHHCCeEEEEECcCc-----HHHHHHHHHHHHH
Confidence 567888 78888877765433 4444653 444558888888999999998653 1223345566653
No 283
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=42.16 E-value=88 Score=19.74 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=22.3
Q ss_pred CcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEE
Q 028736 66 GKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAF 105 (204)
Q Consensus 66 gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v 105 (204)
.++++|-|+.++|. .+...+.++.+.+++. +.+..+
T Consensus 17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~-~~F~~~ 52 (97)
T cd02981 17 DDVVVVGFFKDEES---EEYKTFEKVAESLRDD-YGFGHT 52 (97)
T ss_pred CCeEEEEEECCCCc---HHHHHHHHHHHhcccC-CeEEEE
Confidence 46777777777775 4566666666666542 444333
No 284
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=40.26 E-value=29 Score=20.57 Aligned_cols=31 Identities=6% Similarity=-0.094 Sum_probs=19.0
Q ss_pred EEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeC
Q 028736 72 VNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPC 107 (204)
Q Consensus 72 ~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~ 107 (204)
.|+.++||.|.+..-.+... +..++.+.|+.
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~-----~l~~~~~~v~~ 33 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEK-----GIDVPLVTVDL 33 (74)
T ss_pred EEeCCCCcchHHHHHHHHHc-----CCCceEEEeec
Confidence 45667899998666555443 22355555543
No 285
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=38.41 E-value=80 Score=25.92 Aligned_cols=43 Identities=7% Similarity=0.006 Sum_probs=37.1
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPC 107 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~ 107 (204)
.|||+++-|-...=|.++..+..+++..++.+-.++-+|++..
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 6799999888877788999999999999998877898998874
No 286
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=38.14 E-value=20 Score=23.87 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=22.9
Q ss_pred EeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEe
Q 028736 73 NVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (204)
Q Consensus 73 f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~ 106 (204)
|+..+||.|..+...+.+... ...+.++.+.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~---~~~l~~~~~~ 32 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR---GGRLRFVDIQ 32 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC---CCCEEEEECC
Confidence 567799999988888877722 2358888873
No 287
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=38.06 E-value=27 Score=21.19 Aligned_cols=18 Identities=11% Similarity=0.074 Sum_probs=12.0
Q ss_pred EEeccCCCCCHHhHHHHH
Q 028736 72 VNVASKCGLTQSNYKELN 89 (204)
Q Consensus 72 ~f~~t~C~~C~~~~~~l~ 89 (204)
.|.+..||.|.+....|.
T Consensus 4 Ly~~~~~p~c~kv~~~L~ 21 (77)
T cd03040 4 LYQYKTCPFCCKVRAFLD 21 (77)
T ss_pred EEEcCCCHHHHHHHHHHH
Confidence 455678999996654443
No 288
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=38.05 E-value=58 Score=24.74 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=34.5
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEE
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAF 105 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v 105 (204)
+|-||||-.+...-|-|......|+++..+|.+ +.+|-|
T Consensus 110 ~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki 148 (240)
T KOG3170|consen 110 EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKI 148 (240)
T ss_pred CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEec
Confidence 578999999999999999999999999999997 666655
No 289
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=37.87 E-value=37 Score=18.99 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=8.2
Q ss_pred ccccchhHHHHHHH
Q 028736 6 MKNSNWVSFLFIVF 19 (204)
Q Consensus 6 m~~~~~~~~l~~~~ 19 (204)
||+.+|...+++++
T Consensus 1 ~kk~rwiili~iv~ 14 (47)
T PRK10299 1 MKKFRWVVLVVVVL 14 (47)
T ss_pred CceeeehHHHHHHH
Confidence 67777776544433
No 290
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=37.38 E-value=32 Score=25.20 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=24.9
Q ss_pred EEeccCCCCCHHhHHHHHHHHHHhcCC-CeEEEE
Q 028736 72 VNVASKCGLTQSNYKELNVLYEKYKNQ-DFEVLA 104 (204)
Q Consensus 72 ~f~~t~C~~C~~~~~~l~~l~~~~~~~-~~~~i~ 104 (204)
.|..+.|+.|-..-+.+.++..+++.+ .+.+|.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~ 35 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIP 35 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEE
Confidence 577899999999999999999999986 444443
No 291
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=36.99 E-value=32 Score=25.15 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=22.5
Q ss_pred ccCCCCCHHhHHHHHHHHHHhcCCCeEEEE
Q 028736 75 ASKCGLTQSNYKELNVLYEKYKNQDFEVLA 104 (204)
Q Consensus 75 ~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~ 104 (204)
.++|+-|+ ..+.+..+.+.+.++.+.+..
T Consensus 4 ~~~c~gc~-~~~~~~~l~~~l~~~~iv~~D 32 (178)
T cd02008 4 PGLCPGCP-HRPSFYALRKAFKKDSIVSGD 32 (178)
T ss_pred CCcCCCCC-ChHHHHHHHHHhcCCeEEecC
Confidence 47999999 888999999998875444433
No 292
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=36.76 E-value=93 Score=20.27 Aligned_cols=30 Identities=10% Similarity=0.035 Sum_probs=21.3
Q ss_pred eeeEEECCCCcEEEecCCCCChhHHHHHHHHhh
Q 028736 169 FTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 169 P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll 201 (204)
|..-+.+|+|++.+. ..+++++.+.+++.+
T Consensus 49 PlV~V~~p~g~v~Y~---~V~~edv~~Iv~~~~ 78 (92)
T cd03063 49 PLVEVETPGGRVAYG---PVTPADVASLLDAGA 78 (92)
T ss_pred CEEEEEeCCCcEEEE---eCCHHHHHHHHHHHh
Confidence 666677798875554 477888888877654
No 293
>TIGR03045 PS_II_C550 cytochrome c-550. Members of this protein family are cytochrome c-550, the PsbV extrinsic protein of photosystem II, from both Cyanobacteria and chloroplasts. A paralog to this protein, PsbV2, is found in some species in addition to PsbV itself.
Probab=36.10 E-value=6.9 Score=28.39 Aligned_cols=27 Identities=33% Similarity=0.586 Sum_probs=19.2
Q ss_pred ecCCCCeeecCCC---CCcEEEEEEeccCCCCCH
Q 028736 52 KDIRGNDVSLSGY---RGKVLLVVNVASKCGLTQ 82 (204)
Q Consensus 52 ~~~~g~~~~l~~~---~gk~~lv~f~~t~C~~C~ 82 (204)
.|..|+++.++.- +||-+ +..+|..|=
T Consensus 37 ~~~~g~~~~~~~~~~~~Gk~l----F~~~Ca~CH 66 (159)
T TIGR03045 37 LNSTGETVTLTEEQVKRGKRL----FNTACGTCH 66 (159)
T ss_pred ecCCCCeEEeChHhHHHHHHH----HHHHHHHhC
Confidence 3567888888763 66654 278898887
No 294
>PF02526 GBP_repeat: Glycophorin-binding protein; InterPro: IPR003681 The glycophorin-binding protein contains a tandem repeat. The repeated sequence determines the binding domain for an erythrocyte receptor binding protein of Plasmodium falciparum, the malarial parasite []. Erythrocyte invasion by the malarial merozoite is a receptor-mediated process, an obligatory step in the development of the parasite. The P. falciparum protein binds to the erythrocyte receptor glycophorin.
Probab=35.45 E-value=6.3 Score=20.34 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=15.8
Q ss_pred CCCCcEEEecCCCCChhHHHHHHHHhh
Q 028736 175 NKEGKVVERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 175 d~~G~i~~~~~g~~~~~~~~~~l~~ll 201 (204)
||+|+|+..|..+....+-.+.+-++|
T Consensus 4 dpegqimk~yaadpeyrkh~~v~yqil 30 (38)
T PF02526_consen 4 DPEGQIMKAYAADPEYRKHLNVLYQIL 30 (38)
T ss_pred CchhHHHHHHhcCHHHHHHHHHHHHHH
Confidence 788888877755433334444444444
No 295
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=34.76 E-value=31 Score=21.12 Aligned_cols=19 Identities=5% Similarity=-0.127 Sum_probs=12.3
Q ss_pred EEeccCCCCCHHhHHHHHH
Q 028736 72 VNVASKCGLTQSNYKELNV 90 (204)
Q Consensus 72 ~f~~t~C~~C~~~~~~l~~ 90 (204)
.+..++||.|.+..-.|..
T Consensus 4 Ly~~~~sp~~~kv~~~L~~ 22 (77)
T cd03041 4 LYEFEGSPFCRLVREVLTE 22 (77)
T ss_pred EecCCCCchHHHHHHHHHH
Confidence 4556799999955544443
No 296
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.75 E-value=71 Score=24.64 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=26.6
Q ss_pred cccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHhhhc
Q 028736 163 DAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLGS 203 (204)
Q Consensus 163 ~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~~ 203 (204)
.+|+.+|++++ +|++. ..|-.+++.+.+.|+++++.
T Consensus 180 ~gI~gVP~fv~---d~~~~--V~Gaq~~~v~~~al~~~~~~ 215 (225)
T COG2761 180 MGIRGVPTFVF---DGKYA--VSGAQPYDVLEDALRQLLAE 215 (225)
T ss_pred CCCccCceEEE---cCcEe--ecCCCCHHHHHHHHHHHHhc
Confidence 37888999666 55543 35666788999999998753
No 297
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=34.71 E-value=5.3 Score=22.35 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=16.3
Q ss_pred CCCCCHHhHHHHHHHHHHhcC
Q 028736 77 KCGLTQSNYKELNVLYEKYKN 97 (204)
Q Consensus 77 ~C~~C~~~~~~l~~l~~~~~~ 97 (204)
.|.+|+.-++.|.++.+++.+
T Consensus 18 kC~PCR~Gt~~l~~~l~~i~~ 38 (46)
T PF10589_consen 18 KCTPCREGTRQLAEILEKIVR 38 (46)
T ss_dssp --HHHHCCCCHHHHHHHHHTB
T ss_pred CCCCcHhHHHHHHHHHHHHHc
Confidence 688899999999999888754
No 298
>PF12354 Internalin_N: Bacterial adhesion/invasion protein N terminal; PDB: 2OMT_A 1H6U_A 3RFS_A 3RFJ_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=34.44 E-value=15 Score=21.64 Aligned_cols=8 Identities=50% Similarity=1.178 Sum_probs=0.0
Q ss_pred ccccchhH
Q 028736 6 MKNSNWVS 13 (204)
Q Consensus 6 m~~~~~~~ 13 (204)
||++.|+.
T Consensus 1 Mkk~~~lk 8 (57)
T PF12354_consen 1 MKKKNWLK 8 (57)
T ss_dssp --------
T ss_pred CchhHHHH
Confidence 44444443
No 299
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=34.34 E-value=70 Score=23.95 Aligned_cols=13 Identities=0% Similarity=-0.013 Sum_probs=7.6
Q ss_pred CCCcccceEEecC
Q 028736 42 APKSIYDFTVKDI 54 (204)
Q Consensus 42 ~~~~~p~~~l~~~ 54 (204)
....-|++...+.
T Consensus 36 ~~~~~Pdy~~~~~ 48 (192)
T PRK10893 36 VNNNDPTYQSQHT 48 (192)
T ss_pred CCCCCCCEEEecc
Confidence 3455577766554
No 300
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=34.18 E-value=38 Score=20.47 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=19.2
Q ss_pred CCCcccceEEecCCCCeeecCC
Q 028736 42 APKSIYDFTVKDIRGNDVSLSG 63 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~ 63 (204)
+|+++.+++++|.+|+.+.++.
T Consensus 32 vgQP~ENWElkDe~G~vlD~~k 53 (76)
T PF10790_consen 32 VGQPPENWELKDESGQVLDVNK 53 (76)
T ss_pred cCCCcccceeeccCCcEeeccc
Confidence 6788899999999998888765
No 301
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=34.11 E-value=51 Score=23.94 Aligned_cols=31 Identities=19% Similarity=0.096 Sum_probs=20.8
Q ss_pred cccccceeeEEECCCCcEEEecCCCCChhHHHHHHH
Q 028736 163 DAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQ 198 (204)
Q Consensus 163 ~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~ 198 (204)
.++..+|++++ +|+ +...|....+.+.+.|+
T Consensus 163 ~gv~GvP~~vv---~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 163 LGVFGVPTFVV---NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp TTCSSSSEEEE---TTT--EEEESCSSHHHHHHHH-
T ss_pred cCCcccCEEEE---CCE--EEEECCCCHHHHHHHhC
Confidence 37888899777 666 44566666777777653
No 302
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=34.01 E-value=41 Score=19.12 Aligned_cols=31 Identities=6% Similarity=-0.044 Sum_probs=18.6
Q ss_pred EEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeC
Q 028736 72 VNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPC 107 (204)
Q Consensus 72 ~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~ 107 (204)
.|...+||.|.+....+... +..++++.++.
T Consensus 3 ly~~~~~~~~~~~~~~l~~~-----~i~~~~~~~~~ 33 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK-----GLPYELVPVDL 33 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc-----CCCcEEEEeCC
Confidence 35557899999655555444 22466666653
No 303
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=33.61 E-value=37 Score=27.40 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=14.7
Q ss_pred eccCCCCCHHhHHHHHHHHHHhc
Q 028736 74 VASKCGLTQSNYKELNVLYEKYK 96 (204)
Q Consensus 74 ~~t~C~~C~~~~~~l~~l~~~~~ 96 (204)
..+|||.|- ....++.+.+.+.
T Consensus 17 ~~~~CpGCg-~~~i~~~i~~al~ 38 (301)
T PRK05778 17 PTTWCPGCG-NFGILNAIIQALA 38 (301)
T ss_pred CCCCCCCCC-ChHHHHHHHHHHH
Confidence 346999998 5556665555554
No 304
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=33.51 E-value=1.4e+02 Score=19.72 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=16.8
Q ss_pred ccceEEecCCCCeeecCCCCCcEEEEEEe
Q 028736 46 IYDFTVKDIRGNDVSLSGYRGKVLLVVNV 74 (204)
Q Consensus 46 ~p~~~l~~~~g~~~~l~~~~gk~~lv~f~ 74 (204)
-|+++++-.+|..+.--...|+...|..-
T Consensus 38 ~pevti~~~~~~~ieEyRv~G~l~~IkV~ 66 (105)
T PF11191_consen 38 EPEVTIIEDGGSTIEEYRVNGQLYMIKVQ 66 (105)
T ss_pred CCCEEEEecCCcEEEEEEECCeEeeEEEE
Confidence 46777755555444444446666666554
No 305
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=33.45 E-value=64 Score=21.82 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=26.4
Q ss_pred ccceEEecCC-C---CeeecCCCCCcEEEEEEeccCCCCCHHhH
Q 028736 46 IYDFTVKDIR-G---NDVSLSGYRGKVLLVVNVASKCGLTQSNY 85 (204)
Q Consensus 46 ~p~~~l~~~~-g---~~~~l~~~~gk~~lv~f~~t~C~~C~~~~ 85 (204)
+|+-+|.+-. + ..+.+++..|..++|.=-.+-|+.|+--+
T Consensus 42 FP~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~M 85 (118)
T PF14427_consen 42 FPESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKM 85 (118)
T ss_pred CchhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHH
Confidence 4555554422 2 22334455699999999999999999443
No 306
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=33.28 E-value=95 Score=23.38 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=45.3
Q ss_pred EEEEEEeccCCCCC-----HHhHHHHHHHHHHhcC-------C--CeEEEEEeCCCCCCC-CCCCHHHHHHHHHhhcCcc
Q 028736 68 VLLVVNVASKCGLT-----QSNYKELNVLYEKYKN-------Q--DFEVLAFPCNQFAGQ-EPGSNEEIQEVACTMFKAE 132 (204)
Q Consensus 68 ~~lv~f~~t~C~~C-----~~~~~~l~~l~~~~~~-------~--~~~~i~v~~d~~~~~-~~~~~~~~~~~~~~~~~~~ 132 (204)
.+..+=|++.|+-| +..+..|..+.++|-. . .+.+++=-+|-.++. +..+.+.++.|++++. +
T Consensus 75 g~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~g--n 152 (210)
T KOG0394|consen 75 GVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKG--N 152 (210)
T ss_pred ccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcC--C
Confidence 46667778888766 7788889998888731 1 366676444533322 4468889999997753 5
Q ss_pred ccce
Q 028736 133 FPIF 136 (204)
Q Consensus 133 ~~~~ 136 (204)
+|++
T Consensus 153 ipyf 156 (210)
T KOG0394|consen 153 IPYF 156 (210)
T ss_pred ceeE
Confidence 5555
No 307
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=33.15 E-value=57 Score=26.02 Aligned_cols=22 Identities=9% Similarity=0.010 Sum_probs=14.3
Q ss_pred eccCCCCCHHh--HHHHHHHHHHh
Q 028736 74 VASKCGLTQSN--YKELNVLYEKY 95 (204)
Q Consensus 74 ~~t~C~~C~~~--~~~l~~l~~~~ 95 (204)
..+|||.|... +..+++...++
T Consensus 6 ~~~~CpGCg~~~il~al~~al~~l 29 (279)
T PRK11866 6 PPIWCPGCGNYGILEALRKALAEL 29 (279)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHh
Confidence 35799999844 35555555554
No 308
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=32.68 E-value=1.5e+02 Score=21.78 Aligned_cols=54 Identities=19% Similarity=0.120 Sum_probs=31.8
Q ss_pred cccceEEecCCCCeeec--CCCCC-cEEEEEEeccCCCC-CHHhHHHHHHHHHHhcCC
Q 028736 45 SIYDFTVKDIRGNDVSL--SGYRG-KVLLVVNVASKCGL-TQSNYKELNVLYEKYKNQ 98 (204)
Q Consensus 45 ~~p~~~l~~~~g~~~~l--~~~~g-k~~lv~f~~t~C~~-C~~~~~~l~~l~~~~~~~ 98 (204)
-.|+..+.+...-++.. -.-+| |.+++++=.|=+++ -..-.+.+.+..++.++.
T Consensus 17 ~~P~l~V~si~~I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~ 74 (168)
T PF09419_consen 17 LLPHLYVPSIRDIDFEANHLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQ 74 (168)
T ss_pred cCCCEEcCChhhCCcchhhhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHH
Confidence 45777777766555444 22356 89999888776654 443444555545444443
No 309
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=32.32 E-value=40 Score=26.96 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=14.8
Q ss_pred EeccCCCCCHHhHHHHHHHHHHh
Q 028736 73 NVASKCGLTQSNYKELNVLYEKY 95 (204)
Q Consensus 73 f~~t~C~~C~~~~~~l~~l~~~~ 95 (204)
...+|||.|-... .++.+.+.+
T Consensus 15 ~~~~~CpGCg~~~-il~~l~~al 36 (286)
T PRK11867 15 QEPRWCPGCGDGS-ILAALQRAL 36 (286)
T ss_pred CCCCcCCCCCCHH-HHHHHHHHH
Confidence 3456999998443 666666666
No 310
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=31.61 E-value=1.6e+02 Score=26.35 Aligned_cols=111 Identities=12% Similarity=0.085 Sum_probs=0.0
Q ss_pred CcEEEE-EEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 66 GKVLLV-VNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 66 gk~~lv-~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
+.|+.| ....|...+-..+...+.++.+. |.++|.|++.+....+ .-..+++.+.++ |.+-|++.|.--+..
T Consensus 24 ~~PI~vQSMt~t~T~D~~atv~Qi~~l~~a----GceiVRvtv~~~~~a~--~l~~I~~~l~~~-G~~iPLVADIHF~~~ 96 (611)
T PRK02048 24 PNPIRIQSMTNTSTMDTEACVAQAKRIIDA----GGEYVRLTTQGVREAE--NLMNINIGLRSQ-GYMVPLVADVHFNPK 96 (611)
T ss_pred CCceEEEecCCCCcccHHHHHHHHHHHHHc----CCCEEEEcCCCHHHHH--hHHHHHHHHhhc-CCCCCEEEecCCCcH
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEE----ecCCCCChhHHHHHHHHh
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVE----RYAPTTSPLKIEKDIQNL 200 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~----~~~g~~~~~~~~~~l~~l 200 (204)
.+.....+..+ +=||| |++.. ......+.++..+.|+++
T Consensus 97 ~A~~a~~~v~k----------------iRINP-GN~~~~~k~f~~~~Ytdeey~~el~~i 139 (611)
T PRK02048 97 VADVAAQYAEK----------------VRINP-GNYVDPGRTFKKLEYTDEEYAQEIQKI 139 (611)
T ss_pred HHHHHHHhhCC----------------EEECC-CcCCCccccccccccchhhhhhhhhhH
No 311
>PRK10449 heat-inducible protein; Provisional
Probab=30.81 E-value=1.3e+02 Score=21.09 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=11.3
Q ss_pred ceEEecCCCCeeecC
Q 028736 48 DFTVKDIRGNDVSLS 62 (204)
Q Consensus 48 ~~~l~~~~g~~~~l~ 62 (204)
.+.+..++|+++...
T Consensus 34 ~W~L~~i~G~~~~~~ 48 (140)
T PRK10449 34 RFVLESVNGKPVTSD 48 (140)
T ss_pred eEEEEEECCEEcCCC
Confidence 488888899888643
No 312
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=30.81 E-value=2.5e+02 Score=22.08 Aligned_cols=87 Identities=18% Similarity=0.222 Sum_probs=52.0
Q ss_pred EeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCCCchhHHHH
Q 028736 73 NVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKF 152 (204)
Q Consensus 73 f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 152 (204)
+.+..|+- .-.++.+..+|.++++.+|-|.-+. -.+-..+-+.+..+ ...|-++.| |..-+.....|..
T Consensus 58 ~G~rGtGK----SSlVkall~~y~~~GLRlIev~k~~-----L~~l~~l~~~l~~~-~~kFIlf~D-DLsFe~~d~~yk~ 126 (249)
T PF05673_consen 58 WGARGTGK----SSLVKALLNEYADQGLRLIEVSKED-----LGDLPELLDLLRDR-PYKFILFCD-DLSFEEGDTEYKA 126 (249)
T ss_pred ecCCCCCH----HHHHHHHHHHHhhcCceEEEECHHH-----hccHHHHHHHHhcC-CCCEEEEec-CCCCCCCcHHHHH
Confidence 55556654 3456778888888899999997542 23455566666433 556666653 4444444556666
Q ss_pred HHhhcCCccccccccceeeEEE
Q 028736 153 LKSEKGGFLGDAIKWNFTKFLV 174 (204)
Q Consensus 153 ~~~~~~~~~~~~i~~~P~~~li 174 (204)
++.-.. +++..-|.-++|
T Consensus 127 LKs~Le----Ggle~~P~Nvli 144 (249)
T PF05673_consen 127 LKSVLE----GGLEARPDNVLI 144 (249)
T ss_pred HHHHhc----CccccCCCcEEE
Confidence 655433 255555665554
No 313
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=30.29 E-value=2e+02 Score=20.28 Aligned_cols=38 Identities=5% Similarity=-0.027 Sum_probs=29.9
Q ss_pred ccccceeeEEECCCC---cEEEecCCCCChhHHHHHHHHhh
Q 028736 164 AIKWNFTKFLVNKEG---KVVERYAPTTSPLKIEKDIQNLL 201 (204)
Q Consensus 164 ~i~~~P~~~lid~~G---~i~~~~~g~~~~~~~~~~l~~ll 201 (204)
+....|...+|-+.. .|+.+..|..+++++.+.|...+
T Consensus 93 ~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 93 KTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 345568988887665 67778899999999999888765
No 314
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=29.70 E-value=46 Score=19.70 Aligned_cols=17 Identities=6% Similarity=-0.138 Sum_probs=11.7
Q ss_pred EEeccCCCCCHHhHHHH
Q 028736 72 VNVASKCGLTQSNYKEL 88 (204)
Q Consensus 72 ~f~~t~C~~C~~~~~~l 88 (204)
.|..++||.|.+..-.+
T Consensus 3 ly~~~~~~~~~~v~~~l 19 (73)
T cd03059 3 LYSGPDDVYSHRVRIVL 19 (73)
T ss_pred EEECCCChhHHHHHHHH
Confidence 45567899998665554
No 315
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=29.69 E-value=19 Score=25.72 Aligned_cols=14 Identities=7% Similarity=-0.178 Sum_probs=9.8
Q ss_pred CCCCCHHhHHHHHH
Q 028736 77 KCGLTQSNYKELNV 90 (204)
Q Consensus 77 ~C~~C~~~~~~l~~ 90 (204)
+||+|...-..|+.
T Consensus 15 t~~~C~~ak~iL~~ 28 (147)
T cd03031 15 TFEDCNNVRAILES 28 (147)
T ss_pred cChhHHHHHHHHHH
Confidence 89999865555544
No 316
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.58 E-value=68 Score=23.94 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=38.2
Q ss_pred cEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHH
Q 028736 67 KVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVA 125 (204)
Q Consensus 67 k~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~ 125 (204)
+-.++.||...||.-.....++.+|..-..+.++-|+--. .++.+.+++.+-+++|.
T Consensus 39 Q~YFv~~~~~~~~~~~~li~Ni~~Lr~~~~~~giPVvyTa--qp~~qs~~draLL~d~W 95 (218)
T COG1535 39 QNYFVSPWGENCPLMEQLIANIAKLRIWCKQAGIPVVYTA--QPGEQSPEDRALLKDFW 95 (218)
T ss_pred HHhhcCCCCCCCccHHHHHHHHHHHHHHHHHcCCcEEEEe--cCCcCCHHHHHHHHHhc
Confidence 3456678888888777778888888888888888777543 23334444555555555
No 317
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=29.57 E-value=56 Score=26.19 Aligned_cols=14 Identities=7% Similarity=0.190 Sum_probs=9.6
Q ss_pred ChhHHHHHHHHhhh
Q 028736 189 SPLKIEKDIQNLLG 202 (204)
Q Consensus 189 ~~~~~~~~l~~ll~ 202 (204)
+++++.+.|++.++
T Consensus 161 ~~~eL~~ai~~Al~ 174 (287)
T TIGR02177 161 DVAHLKEIIKEAIN 174 (287)
T ss_pred CHHHHHHHHHHHHh
Confidence 55677777777664
No 318
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=29.28 E-value=85 Score=21.84 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHhhcCc
Q 028736 116 GSNEEIQEVACTMFKA 131 (204)
Q Consensus 116 ~~~~~~~~~~~~~~~~ 131 (204)
.+++++.+|+.++||.
T Consensus 74 ~Sd~eI~~~~v~RYG~ 89 (126)
T TIGR03147 74 KSNQQIIDFMTARFGD 89 (126)
T ss_pred CCHHHHHHHHHHhcCC
Confidence 5899999999999874
No 319
>PF14062 DUF4253: Domain of unknown function (DUF4253)
Probab=28.72 E-value=1.2e+02 Score=20.41 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=35.7
Q ss_pred CCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCC---CCCCCCHHHHHHHHHhhcCccccce
Q 028736 77 KCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFA---GQEPGSNEEIQEVACTMFKAEFPIF 136 (204)
Q Consensus 77 ~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (204)
.|+.-......++..+++|+ +++++++.|... ...|.+.+++.+++.+++.+-...+
T Consensus 25 ~~~~~~~~~a~lr~W~er~g---a~i~~i~~d~le~~v~~pP~~~~ea~~lA~E~y~fCpD~v 84 (111)
T PF14062_consen 25 YCPDTADIIAVLRYWEERYG---AEIVGIGFDTLELSVARPPQTPEEAEALAAEHYAFCPDIV 84 (111)
T ss_pred CCCCHHHHHHHHHHHHHHhC---EEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHhCccHH
Confidence 46666777777777888776 555555433111 1234577899999988765544444
No 320
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=28.41 E-value=44 Score=19.83 Aligned_cols=16 Identities=6% Similarity=0.063 Sum_probs=10.5
Q ss_pred EeccCCCCCHHhHHHH
Q 028736 73 NVASKCGLTQSNYKEL 88 (204)
Q Consensus 73 f~~t~C~~C~~~~~~l 88 (204)
+...+||+|.+-.-.|
T Consensus 4 y~~~~~p~~~rvr~~L 19 (71)
T cd03037 4 YIYEHCPFCVKARMIA 19 (71)
T ss_pred EecCCCcHhHHHHHHH
Confidence 4457899998544433
No 321
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=28.39 E-value=1.4e+02 Score=26.48 Aligned_cols=64 Identities=9% Similarity=0.165 Sum_probs=34.3
Q ss_pred cEEEEEEe-ccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCcccccee
Q 028736 67 KVLLVVNV-ASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFD 137 (204)
Q Consensus 67 k~~lv~f~-~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (204)
.|+.|.=. .|...+-..+...+.++.+ .|.++|.|++.+... -+.-..+++.+.+ .|.+-|++.
T Consensus 29 ~PI~VQSMt~t~T~D~~atv~Qi~~L~~----aGceiVRvtvp~~~~--A~al~~I~~~L~~-~g~~iPLVA 93 (606)
T PRK00694 29 HSIKIQSMTTTATTDVDGTVRQICALQE----WGCDIVRVTVQGLKE--AQACEHIKERLIQ-QGISIPLVA 93 (606)
T ss_pred CceEEEecCCCCcccHHHHHHHHHHHHH----cCCCEEEEcCCCHHH--HHhHHHHHHHHhc-cCCCCCEEe
Confidence 56666444 3344445555555555555 388999998864100 0112233333423 378888884
No 322
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=28.19 E-value=27 Score=21.30 Aligned_cols=15 Identities=20% Similarity=0.596 Sum_probs=11.9
Q ss_pred eeeEEECCCCcEEEe
Q 028736 169 FTKFLVNKEGKVVER 183 (204)
Q Consensus 169 P~~~lid~~G~i~~~ 183 (204)
-..|.||++|++...
T Consensus 19 ~v~~~I~~~G~v~~~ 33 (79)
T PF03544_consen 19 VVEFTIDPDGRVSDV 33 (79)
T ss_dssp EEEEEEETTTEEEEE
T ss_pred EEEEEEeCCCCEEEE
Confidence 345899999998864
No 323
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=28.08 E-value=86 Score=18.64 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=11.5
Q ss_pred eeEEECCCCcEEEe
Q 028736 170 TKFLVNKEGKVVER 183 (204)
Q Consensus 170 ~~~lid~~G~i~~~ 183 (204)
..|.||++|++...
T Consensus 14 v~~~i~~~G~v~~~ 27 (74)
T TIGR01352 14 VRFTVDADGRVTSV 27 (74)
T ss_pred EEEEECCCCCEEEE
Confidence 45899999999764
No 324
>PF14202 TnpW: Transposon-encoded protein TnpW
Probab=28.05 E-value=87 Score=16.56 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=14.9
Q ss_pred cCCCCChhHHHHHHHHhhhcC
Q 028736 184 YAPTTSPLKIEKDIQNLLGSC 204 (204)
Q Consensus 184 ~~g~~~~~~~~~~l~~ll~~~ 204 (204)
+-.....|.+.+.|++++.++
T Consensus 17 ~F~~~s~et~~DKi~rli~~e 37 (37)
T PF14202_consen 17 HFSETSKETMQDKIKRLIRRE 37 (37)
T ss_pred EECCCccccHHHHHHHHHhcC
Confidence 444446678999999998753
No 325
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=27.89 E-value=93 Score=21.65 Aligned_cols=16 Identities=19% Similarity=0.067 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHhhcCc
Q 028736 116 GSNEEIQEVACTMFKA 131 (204)
Q Consensus 116 ~~~~~~~~~~~~~~~~ 131 (204)
.+++++..|+.++||.
T Consensus 74 ~sd~eI~~~~v~RYG~ 89 (126)
T PRK10144 74 KSEVEIIGWMTERYGD 89 (126)
T ss_pred CCHHHHHHHHHHhcCC
Confidence 5899999999998774
No 326
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=27.84 E-value=75 Score=20.66 Aligned_cols=18 Identities=6% Similarity=0.261 Sum_probs=14.9
Q ss_pred eeEEECCCCcEEEecCCC
Q 028736 170 TKFLVNKEGKVVERYAPT 187 (204)
Q Consensus 170 ~~~lid~~G~i~~~~~g~ 187 (204)
..++.||+|+.+..+.|.
T Consensus 93 ~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 93 GVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred EEEEECCCCCEEEEecCC
Confidence 358999999999888664
No 327
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=27.74 E-value=2e+02 Score=24.51 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=7.7
Q ss_pred eEEecCCCCeeec
Q 028736 49 FTVKDIRGNDVSL 61 (204)
Q Consensus 49 ~~l~~~~g~~~~l 61 (204)
+.+.+.+|..+.-
T Consensus 108 iK~~~~~G~~i~~ 120 (446)
T PRK14324 108 IKFFDSYGNKLDE 120 (446)
T ss_pred EEEECCCCCCCCH
Confidence 6666666655543
No 328
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=27.69 E-value=3.8e+02 Score=22.82 Aligned_cols=11 Identities=9% Similarity=0.054 Sum_probs=6.2
Q ss_pred eEEecCCCCee
Q 028736 49 FTVKDIRGNDV 59 (204)
Q Consensus 49 ~~l~~~~g~~~ 59 (204)
+.+.+.+|..+
T Consensus 109 iK~~~~~G~~i 119 (448)
T PRK14316 109 IKFFGSDGFKL 119 (448)
T ss_pred EEEEcCCCCcC
Confidence 55666666443
No 329
>PLN03207 stomagen; Provisional
Probab=27.62 E-value=61 Score=21.36 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=14.6
Q ss_pred cccceEEecCCCCeeecCCCCCcEEEEEEeccCCC
Q 028736 45 SIYDFTVKDIRGNDVSLSGYRGKVLLVVNVASKCG 79 (204)
Q Consensus 45 ~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~t~C~ 79 (204)
..|+-.....+|....-.. |-.+|-=.|+.|.
T Consensus 46 ~~~q~~~~~l~g~~~~k~s---rr~~igs~aptct 77 (113)
T PLN03207 46 YPHQETVKLLNGGHLSKSS---RRLMIGSTAPTCT 77 (113)
T ss_pred cCchhccccccccccchhh---hhhhhcCcCCccc
Confidence 3445555556665432222 3344444444553
No 330
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=27.02 E-value=1e+02 Score=19.03 Aligned_cols=14 Identities=14% Similarity=0.567 Sum_probs=9.8
Q ss_pred eeEEECCCCcEEEe
Q 028736 170 TKFLVNKEGKVVER 183 (204)
Q Consensus 170 ~~~lid~~G~i~~~ 183 (204)
..+.||++|+|...
T Consensus 30 V~i~i~~dG~v~~~ 43 (85)
T PF13103_consen 30 VRITIDPDGRVISV 43 (85)
T ss_dssp EEEEE-TTSBEEEE
T ss_pred EEEEECCCCCEEEE
Confidence 44889999999543
No 331
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=26.72 E-value=83 Score=22.07 Aligned_cols=13 Identities=23% Similarity=0.623 Sum_probs=11.8
Q ss_pred eeEEECCCCcEEE
Q 028736 170 TKFLVNKEGKVVE 182 (204)
Q Consensus 170 ~~~lid~~G~i~~ 182 (204)
.++++|++|++++
T Consensus 52 ~~~~~d~~g~~~~ 64 (161)
T PF05228_consen 52 LIFILDPDGRVLY 64 (161)
T ss_pred EEEEEcCCCCEEE
Confidence 5699999999998
No 332
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=26.43 E-value=1.5e+02 Score=24.02 Aligned_cols=32 Identities=22% Similarity=0.171 Sum_probs=21.1
Q ss_pred CCcccceEEecCCCCeeecCCCCCcEEEEEEec
Q 028736 43 PKSIYDFTVKDIRGNDVSLSGYRGKVLLVVNVA 75 (204)
Q Consensus 43 ~~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~ 75 (204)
...+-.+++.+.-| ...+..--.|++++.+.+
T Consensus 37 ~a~a~t~Ti~~a~g-~~~vpknPekVvv~D~ga 68 (320)
T COG4607 37 SAAAATVTVKHALG-ETVVPKNPEKVVVLDLGA 68 (320)
T ss_pred hccCceEEeeccCC-cccccCCCceEEEecchh
Confidence 34455688888777 445555455788888775
No 333
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=26.42 E-value=1.9e+02 Score=27.33 Aligned_cols=42 Identities=12% Similarity=0.024 Sum_probs=31.7
Q ss_pred EEEEEEeccCCCCCHHh----HHHHHHHHHHhcCCCeEEEEEeCCC
Q 028736 68 VLLVVNVASKCGLTQSN----YKELNVLYEKYKNQDFEVLAFPCNQ 109 (204)
Q Consensus 68 ~~lv~f~~t~C~~C~~~----~~~l~~l~~~~~~~~~~~i~v~~d~ 109 (204)
...+.+-.++|+.|... +..|+.+.++-.++++.+|++-...
T Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ig~~~p~ 831 (912)
T TIGR02171 786 WPVANFDATISDPGQQIINENMNSLKAFIDETAKKGVKVIGTIFPQ 831 (912)
T ss_pred cccccccccccCccHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCC
Confidence 55666777789888554 4677778888888899999997653
No 334
>PRK12359 flavodoxin FldB; Provisional
Probab=26.38 E-value=2.1e+02 Score=20.96 Aligned_cols=15 Identities=20% Similarity=0.229 Sum_probs=10.1
Q ss_pred CCChhHHHHHHHHhh
Q 028736 187 TTSPLKIEKDIQNLL 201 (204)
Q Consensus 187 ~~~~~~~~~~l~~ll 201 (204)
..+.+++.+.++++.
T Consensus 151 ~~t~~ri~~W~~~~~ 165 (172)
T PRK12359 151 DLSDERIQQWCEQIL 165 (172)
T ss_pred hhhHHHHHHHHHHHH
Confidence 446677877777664
No 335
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=26.29 E-value=49 Score=23.54 Aligned_cols=15 Identities=20% Similarity=0.616 Sum_probs=11.5
Q ss_pred EecCCCCeeecCCCC
Q 028736 51 VKDIRGNDVSLSGYR 65 (204)
Q Consensus 51 l~~~~g~~~~l~~~~ 65 (204)
+-..+|+.++..+|.
T Consensus 41 VG~VnGe~Is~~ef~ 55 (145)
T PF13623_consen 41 VGEVNGEKISYQEFQ 55 (145)
T ss_pred eEeECCEEcCHHHHH
Confidence 345799999988874
No 336
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=26.16 E-value=90 Score=22.49 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=22.7
Q ss_pred eeEEECCCCcEEEecCCC-----CChhHHHHHHHHhh
Q 028736 170 TKFLVNKEGKVVERYAPT-----TSPLKIEKDIQNLL 201 (204)
Q Consensus 170 ~~~lid~~G~i~~~~~g~-----~~~~~~~~~l~~ll 201 (204)
..+.+++||.|..-+.|. .+.+++++.|++.|
T Consensus 21 ~~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l 57 (165)
T TIGR03027 21 GSVPVRPDGKITTPLVGDLVASGKTPTQLARDIEEKL 57 (165)
T ss_pred cceEECCCCeEeecccCeEEECCCCHHHHHHHHHHHH
Confidence 347899999998765553 36677777776655
No 337
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.62 E-value=53 Score=21.92 Aligned_cols=18 Identities=6% Similarity=0.047 Sum_probs=15.5
Q ss_pred cEEEEEEeccCCCCCHHh
Q 028736 67 KVLLVVNVASKCGLTQSN 84 (204)
Q Consensus 67 k~~lv~f~~t~C~~C~~~ 84 (204)
-++=|....+.||.|-..
T Consensus 41 dyV~ie~G~t~CP~Cg~~ 58 (115)
T COG1885 41 DYVEIEVGSTSCPKCGEP 58 (115)
T ss_pred CeEEEecccccCCCCCCc
Confidence 588899999999999843
No 338
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=25.41 E-value=1.7e+02 Score=18.71 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=20.5
Q ss_pred eeeEEECCCCcEEEecCCCC--ChhHHHHHHHHhhh
Q 028736 169 FTKFLVNKEGKVVERYAPTT--SPLKIEKDIQNLLG 202 (204)
Q Consensus 169 P~~~lid~~G~i~~~~~g~~--~~~~~~~~l~~ll~ 202 (204)
|..+++|++|+-+--..+.. ..+++.+.|.+++.
T Consensus 39 PaVvvvde~g~~vIplL~GH~GGan~lA~~iA~~lg 74 (84)
T PF11760_consen 39 PAVVVVDEDGRFVIPLLGGHRGGANELARQIAELLG 74 (84)
T ss_dssp -EEEEE-TT--EEEEEE-TTTT-HHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCEEEEeccCCcchHHHHHHHHHHHhC
Confidence 89999999998776543333 25778888877764
No 339
>KOG3446 consensus NADH:ubiquinone oxidoreductase NDUFA2/B8 subunit [Energy production and conversion]
Probab=25.37 E-value=1.9e+02 Score=18.59 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHhhc------CccccceeeccCCCCCchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCC
Q 028736 116 GSNEEIQEVACTMF------KAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTS 189 (204)
Q Consensus 116 ~~~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~ 189 (204)
...+-+++|++..| ++++|++ ..+-.....++|.-+ .+|+-+-.....++
T Consensus 27 paSagvR~fvEk~Y~~lKkaNP~lPIL--IREcSgVqPrl~ARY----------------------~~G~E~~v~L~~~s 82 (97)
T KOG3446|consen 27 PASAGVREFVEKFYVNLKKANPDLPIL--IRECSGVQPRLWARY----------------------GNGVERSVSLANLS 82 (97)
T ss_pred CcchhHHHHHHHhhhhhhhcCCCCcEe--ehhhcCCchHHHHHh----------------------cCCceEEeehhhcc
Confidence 34556777875432 6678888 455544444444321 34555555555567
Q ss_pred hhHHHHHHHHhhhc
Q 028736 190 PLKIEKDIQNLLGS 203 (204)
Q Consensus 190 ~~~~~~~l~~ll~~ 203 (204)
.+.+...|+.+.++
T Consensus 83 ~~~i~kale~l~k~ 96 (97)
T KOG3446|consen 83 APQIHKALENLGKQ 96 (97)
T ss_pred hHHHHHHHHHHhcC
Confidence 88899999888764
No 340
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=25.15 E-value=28 Score=19.25 Aligned_cols=6 Identities=17% Similarity=0.645 Sum_probs=3.9
Q ss_pred CCCCHH
Q 028736 78 CGLTQS 83 (204)
Q Consensus 78 C~~C~~ 83 (204)
||+|+.
T Consensus 1 CP~C~~ 6 (43)
T PF03470_consen 1 CPFCPG 6 (43)
T ss_pred CCCCCC
Confidence 777763
No 341
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=24.91 E-value=3.5e+02 Score=21.41 Aligned_cols=110 Identities=12% Similarity=0.146 Sum_probs=63.4
Q ss_pred cEEEEEEeccCCCC-CHHhHHHHHHHHHHhcCCCeEEEEE----------------eCCCCCCCCCCCHHHHHHHHHhhc
Q 028736 67 KVLLVVNVASKCGL-TQSNYKELNVLYEKYKNQDFEVLAF----------------PCNQFAGQEPGSNEEIQEVACTMF 129 (204)
Q Consensus 67 k~~lv~f~~t~C~~-C~~~~~~l~~l~~~~~~~~~~~i~v----------------~~d~~~~~~~~~~~~~~~~~~~~~ 129 (204)
++.+--.-++.|+. -+.++....+...+..++|-++|-+ .+.. ..++-.++.++|..+.
T Consensus 17 ~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~---r~~eGR~ef~kY~a~A- 92 (337)
T KOG0805|consen 17 IVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGV---RNEEGRDEFRKYHASA- 92 (337)
T ss_pred ceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEee---cchhhhHHHHHHHHHh-
Confidence 45555666788987 9999999999999998887666532 1110 1123455666666443
Q ss_pred CccccceeeccCCCCCchhHHHHHHhhcCC-----ccccccccceeeEEECCCCcEEEecCCCCC
Q 028736 130 KAEFPIFDKIDVNGKNAAPIYKFLKSEKGG-----FLGDAIKWNFTKFLVNKEGKVVERYAPTTS 189 (204)
Q Consensus 130 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~P~~~lid~~G~i~~~~~g~~~ 189 (204)
++..++...++....+...-. ++..+-.-+=+.+++||+|.-+.+|...++
T Consensus 93 ---------Iev~gpEv~~l~~la~~~~v~lv~G~iEreg~TLYCt~~f~~p~g~~lGKHRKlmP 148 (337)
T KOG0805|consen 93 ---------IEVPGPEVERLAELAKKNNVYLVMGAIEREGYTLYCTVLFFSPQGQFLGKHRKLMP 148 (337)
T ss_pred ---------hcCCChHHHHHHHHhhcCCeEEEEEEEeccccEEEEEEEEECCCcccccccccccc
Confidence 445555555554333222110 000111112456789999988777765543
No 342
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=24.71 E-value=79 Score=20.17 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=10.6
Q ss_pred ccccchhHHHHHHHHHHHHhh
Q 028736 6 MKNSNWVSFLFIVFAFFLYFY 26 (204)
Q Consensus 6 m~~~~~~~~l~~~~~~~~~~~ 26 (204)
|-|+.|++.++++.+...+++
T Consensus 1 MaRRlwiLslLAVtLtVALAA 21 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAA 21 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhc
Confidence 446666665554444433333
No 343
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=24.69 E-value=19 Score=25.38 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=12.1
Q ss_pred cceEEecCCCCeeecCCCC
Q 028736 47 YDFTVKDIRGNDVSLSGYR 65 (204)
Q Consensus 47 p~~~l~~~~g~~~~l~~~~ 65 (204)
++-.+-..+|++++..++.
T Consensus 38 ~~~~vA~V~g~~It~~e~~ 56 (154)
T PF13624_consen 38 NNNVVAKVNGEKITKSELD 56 (154)
T ss_dssp ---EEEEETTEEEEHHHHH
T ss_pred CCCEEEEECCEEeCHHHHH
Confidence 3445556789999988863
No 344
>COG5510 Predicted small secreted protein [Function unknown]
Probab=24.69 E-value=76 Score=17.53 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=8.4
Q ss_pred ccccchhHHHHHHHHHHHHhh
Q 028736 6 MKNSNWVSFLFIVFAFFLYFY 26 (204)
Q Consensus 6 m~~~~~~~~l~~~~~~~~~~~ 26 (204)
||+.....++++++...+..+
T Consensus 2 mk~t~l~i~~vll~s~llaaC 22 (44)
T COG5510 2 MKKTILLIALVLLASTLLAAC 22 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHh
Confidence 444333333333333344444
No 345
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=24.51 E-value=4.1e+02 Score=22.00 Aligned_cols=111 Identities=13% Similarity=0.189 Sum_probs=60.6
Q ss_pred CCcEEEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccceeeccCCCC
Q 028736 65 RGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGK 144 (204)
Q Consensus 65 ~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 144 (204)
.+||.++.|..-.=..=.. .+.++...|+++|..++-...|.| +-...++++.|. ++.|.+ ++.. ...++
T Consensus 136 ~~~p~Vil~vGVNG~GKTT---TIaKLA~~l~~~g~~VllaA~DTF---RAaAiEQL~~w~-er~gv~--vI~~-~~G~D 205 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTT---TIAKLAKYLKQQGKSVLLAAGDTF---RAAAIEQLEVWG-ERLGVP--VISG-KEGAD 205 (340)
T ss_pred CCCcEEEEEEecCCCchHh---HHHHHHHHHHHCCCeEEEEecchH---HHHHHHHHHHHH-HHhCCe--EEcc-CCCCC
Confidence 4578888888765544333 445555556667777777777653 333456777777 443443 3421 13444
Q ss_pred CchhHHHHHHhhcCCccccccccceeeEEECCCCcEEEecCCCCChhHHHHHHHHh
Q 028736 145 NAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNL 200 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~l 200 (204)
.+.-.|+......... --.+++|--|+.- +...+.+.|+++
T Consensus 206 pAaVafDAi~~Akar~--------~DvvliDTAGRLh-------nk~nLM~EL~KI 246 (340)
T COG0552 206 PAAVAFDAIQAAKARG--------IDVVLIDTAGRLH-------NKKNLMDELKKI 246 (340)
T ss_pred cHHHHHHHHHHHHHcC--------CCEEEEeCccccc-------CchhHHHHHHHH
Confidence 4444444433222211 1348999888763 333455555544
No 346
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=24.40 E-value=1.6e+02 Score=17.41 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=29.2
Q ss_pred CHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccccce
Q 028736 81 TQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFPIF 136 (204)
Q Consensus 81 C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (204)
|+.-+-.+.+..+++... +.+-|-+|+ +.+..++.+|+... |..+...
T Consensus 10 CP~Pll~~~~~l~~l~~G--~~l~v~~d~-----~~~~~di~~~~~~~-g~~~~~~ 57 (70)
T PF01206_consen 10 CPMPLLKAKKALKELPPG--EVLEVLVDD-----PAAVEDIPRWCEEN-GYEVVEV 57 (70)
T ss_dssp TTHHHHHHHHHHHTSGTT---EEEEEESS-----TTHHHHHHHHHHHH-TEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCC--CEEEEEECC-----ccHHHHHHHHHHHC-CCEEEEE
Confidence 676666777777776552 333333332 46788999999654 7654333
No 347
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=23.97 E-value=2.6e+02 Score=20.84 Aligned_cols=37 Identities=14% Similarity=0.367 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHhcCC--CeEEEEEeCCCCCCCCCCCHHHHHHHHHhh
Q 028736 84 NYKELNVLYEKYKNQ--DFEVLAFPCNQFAGQEPGSNEEIQEVACTM 128 (204)
Q Consensus 84 ~~~~l~~l~~~~~~~--~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~ 128 (204)
....|+++.+....- .++.|+||++. .+.+.+|+...
T Consensus 19 r~~~F~~lw~~l~~~~~~Lk~lAiSc~~--------~~~li~~L~~~ 57 (183)
T PF12617_consen 19 RLAAFERLWQALAPSVPQLKLLAISCPD--------GEGLIDYLWQL 57 (183)
T ss_pred ccHHHHHHHHHHHhhhhhccEEEEECCC--------CHHHHHHHHHH
Confidence 344566666665542 58999999973 46666666544
No 348
>PF10050 DUF2284: Predicted metal-binding protein (DUF2284); InterPro: IPR019271 This entry represents a family of predicted metal-binding bacterial and archaeal proteins with no known function.
Probab=23.90 E-value=1.9e+02 Score=20.89 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=22.0
Q ss_pred EeccC-CCC-CHHhHHHHHHHHHHhcCCCeEEEEEeCC
Q 028736 73 NVASK-CGL-TQSNYKELNVLYEKYKNQDFEVLAFPCN 108 (204)
Q Consensus 73 f~~t~-C~~-C~~~~~~l~~l~~~~~~~~~~~i~v~~d 108 (204)
+.-.| ||+ +. ....+++..++|+. ..++....+
T Consensus 27 Yg~~~~CPP~~~-~~~e~~~~l~~Y~~--all~~~~~~ 61 (166)
T PF10050_consen 27 YGKNWSCPPYVP-DPEECREMLREYKK--ALLFQTKVP 61 (166)
T ss_pred cCCCCCCccCCC-CHHHHHHHHHhCCe--EEEEEEEec
Confidence 34456 888 66 77888888888886 455554433
No 349
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=23.79 E-value=45 Score=20.49 Aligned_cols=15 Identities=27% Similarity=0.614 Sum_probs=11.9
Q ss_pred eeEEECCCCcEEEec
Q 028736 170 TKFLVNKEGKVVERY 184 (204)
Q Consensus 170 ~~~lid~~G~i~~~~ 184 (204)
..|++|++|+++..-
T Consensus 55 ~~~ivd~~G~ii~hp 69 (81)
T PF02743_consen 55 YAFIVDKNGTIIAHP 69 (81)
T ss_dssp EEEEEETTSBBCE-S
T ss_pred EEEEEECCCCEEEeC
Confidence 459999999998764
No 350
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=23.78 E-value=2.4e+02 Score=19.05 Aligned_cols=9 Identities=11% Similarity=0.029 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 028736 118 NEEIQEVAC 126 (204)
Q Consensus 118 ~~~~~~~~~ 126 (204)
...+++++.
T Consensus 99 ~~~~~~~l~ 107 (140)
T TIGR01753 99 VDDWEERLK 107 (140)
T ss_pred HHHHHHHHH
Confidence 334555553
No 351
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=23.69 E-value=1.7e+02 Score=17.24 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=21.2
Q ss_pred ccceeeEEECCCCcEEEecC-----CCCChhHHHHHHHHhhhc
Q 028736 166 KWNFTKFLVNKEGKVVERYA-----PTTSPLKIEKDIQNLLGS 203 (204)
Q Consensus 166 ~~~P~~~lid~~G~i~~~~~-----g~~~~~~~~~~l~~ll~~ 203 (204)
..-|.+|-+|.+|+...... +.. ++...+.+++....
T Consensus 16 ~~aP~vF~~d~~g~a~~~~~~~~~~~~v-~~~~~~~~~~Aa~~ 57 (65)
T PF13459_consen 16 ELAPEVFELDDDGKAVVLVDGGEGEGEV-PEEDEEDVREAAEA 57 (65)
T ss_pred hhCCccEEECCCCCEEEEecCcccccCC-CchhHHHHHHHHHh
Confidence 33488999999997654432 222 33445555544433
No 352
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.62 E-value=4.5e+02 Score=22.22 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=20.8
Q ss_pred CCCcEEEEEEeccCCCCCHHhHHHHHHH
Q 028736 64 YRGKVLLVVNVASKCGLTQSNYKELNVL 91 (204)
Q Consensus 64 ~~gk~~lv~f~~t~C~~C~~~~~~l~~l 91 (204)
..|.+-+=.|++-.|..|+.-...|+-.
T Consensus 114 i~g~~~FETy~SltC~nCPDVVQALN~m 141 (520)
T COG3634 114 IDGDFHFETYFSLTCHNCPDVVQALNLM 141 (520)
T ss_pred cCCceeEEEEEEeeccCChHHHHHHHHH
Confidence 4567777778888999999776666543
No 353
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=23.50 E-value=99 Score=19.85 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=14.7
Q ss_pred eeEEECCCCcEEEecCCC
Q 028736 170 TKFLVNKEGKVVERYAPT 187 (204)
Q Consensus 170 ~~~lid~~G~i~~~~~g~ 187 (204)
..++.||+|+.+....|.
T Consensus 95 ~~~~~DPdG~~iEi~~~~ 112 (113)
T cd08345 95 SIYFYDPDGHLLELHAGT 112 (113)
T ss_pred EEEEECCCCCEEEEEeCc
Confidence 558999999999877664
No 354
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=23.27 E-value=83 Score=19.58 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=13.2
Q ss_pred eeeEEECCCCcEEEe
Q 028736 169 FTKFLVNKEGKVVER 183 (204)
Q Consensus 169 P~~~lid~~G~i~~~ 183 (204)
-..+++|+||.++..
T Consensus 16 ~~~~l~~~dG~~i~~ 30 (91)
T PF03259_consen 16 RGAVLVDKDGLVIAS 30 (91)
T ss_dssp EEEEEEETTSEEEEE
T ss_pred eEEEEEcCCCCEEEE
Confidence 456899999999988
No 355
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=23.24 E-value=1.3e+02 Score=24.32 Aligned_cols=53 Identities=11% Similarity=0.076 Sum_probs=31.9
Q ss_pred EEEEEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCC-----CCHHHHHHHHH
Q 028736 69 LLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEP-----GSNEEIQEVAC 126 (204)
Q Consensus 69 ~lv~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~-----~~~~~~~~~~~ 126 (204)
+||-|- -||..- ..++-+...+.+.++++|+|+...|+..+. -++++.+.|.+
T Consensus 37 TVv~~h--GsPGSH---~DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~~~~~~n~er~~~~~ 94 (297)
T PF06342_consen 37 TVVAFH--GSPGSH---NDFKYIRPPLDEAGIRFIGINYPGFGFTPGYPDQQYTNEERQNFVN 94 (297)
T ss_pred eEEEec--CCCCCc---cchhhhhhHHHHcCeEEEEeCCCCCCCCCCCcccccChHHHHHHHH
Confidence 566543 455444 445555555556789999999887655432 24456666653
No 356
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=23.11 E-value=4.6e+02 Score=22.16 Aligned_cols=12 Identities=8% Similarity=0.119 Sum_probs=6.8
Q ss_pred eEEecCCCCeee
Q 028736 49 FTVKDIRGNDVS 60 (204)
Q Consensus 49 ~~l~~~~g~~~~ 60 (204)
+.+.+.+|..+.
T Consensus 106 iK~~~~~G~~i~ 117 (434)
T cd05802 106 IKFFSSDGYKLP 117 (434)
T ss_pred EEEECCCCCcCC
Confidence 566666665443
No 357
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=23.10 E-value=57 Score=26.04 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=14.5
Q ss_pred eccCCCCCHHhHHHHHHHHHHhcC
Q 028736 74 VASKCGLTQSNYKELNVLYEKYKN 97 (204)
Q Consensus 74 ~~t~C~~C~~~~~~l~~l~~~~~~ 97 (204)
-.+|||.|. ....+..+.+.+.+
T Consensus 7 ~~~~CpGCg-~~~i~~~~~~a~~~ 29 (280)
T PRK11869 7 DIAWCPGCG-NFGIRNALMKALSE 29 (280)
T ss_pred CCCCCcCCC-CHHHHHHHHHHHHH
Confidence 357999998 55555555555533
No 358
>PF06356 DUF1064: Protein of unknown function (DUF1064); InterPro: IPR009414 This entry is represented by Bacteriophage 92, Orf34. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins whose functions have not been experimentally determined. Computational analysis involving sequence, predicted strucutre and genomic context suggests that these proteins may be endonucleases which function in phage genome segregation, or the repair of double-stranded breaks introduced during either this process or DNA replication [].
Probab=23.07 E-value=2.1e+02 Score=19.59 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=18.7
Q ss_pred ccccceeeEEECCCCcEEEec-CCCCC
Q 028736 164 AIKWNFTKFLVNKEGKVVERY-APTTS 189 (204)
Q Consensus 164 ~i~~~P~~~lid~~G~i~~~~-~g~~~ 189 (204)
.+.++|-+++.+.+|.+.-.. .|..+
T Consensus 61 ~i~Y~aDF~~~~~~g~~~V~DVKG~~T 87 (118)
T PF06356_consen 61 AITYIADFVYYDADGRVEVEDVKGVKT 87 (118)
T ss_pred ceEEeccEEEEeCCCcEEEEECCCCcC
Confidence 678889999999999775554 44334
No 359
>COG3411 Ferredoxin [Energy production and conversion]
Probab=23.01 E-value=1.5e+02 Score=17.89 Aligned_cols=29 Identities=17% Similarity=0.078 Sum_probs=18.9
Q ss_pred eeeEEECCCCcEEEecCCCCChhHHHHHHHHhhh
Q 028736 169 FTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLG 202 (204)
Q Consensus 169 P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ll~ 202 (204)
|.++++ |+|.. .+.++++.+.+.+++.|.
T Consensus 18 Pvl~vY-pegvW----Y~~V~p~~a~rIv~~hl~ 46 (64)
T COG3411 18 PVLVVY-PEGVW----YTRVDPEDARRIVQSHLL 46 (64)
T ss_pred CEEEEe-cCCee----EeccCHHHHHHHHHHHHh
Confidence 665555 88844 344678877777776553
No 360
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=23.01 E-value=2.6e+02 Score=19.24 Aligned_cols=36 Identities=17% Similarity=0.013 Sum_probs=19.1
Q ss_pred CCCcccceEEecCCCCeeecCCC---CCcEEEE---EEeccC
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGY---RGKVLLV---VNVASK 77 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~---~gk~~lv---~f~~t~ 77 (204)
.|-.+.+..+...+|++...+-. +..++=| +||++.
T Consensus 40 ~~Isae~~~l~~sd~~~~~~s~l~N~~q~pv~v~YrfYWYD~ 81 (123)
T COG5633 40 AGISAEKPVLSESDGQPSASSVLKNKRQEPVTVHYRFYWYDA 81 (123)
T ss_pred ccccccCCeeeeeccccceeEEEeccccCceEEEEEEEEEcC
Confidence 34455555666667777444443 3345544 456543
No 361
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=22.96 E-value=2.5e+02 Score=23.85 Aligned_cols=12 Identities=8% Similarity=0.199 Sum_probs=7.1
Q ss_pred eEEecCCCCeee
Q 028736 49 FTVKDIRGNDVS 60 (204)
Q Consensus 49 ~~l~~~~g~~~~ 60 (204)
+.+.+.+|..+.
T Consensus 111 iK~~~~~G~~i~ 122 (440)
T PRK14323 111 IKFFGADGEKLP 122 (440)
T ss_pred EEEeCCCCCcCC
Confidence 566666665443
No 362
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=22.88 E-value=1.8e+02 Score=17.41 Aligned_cols=46 Identities=15% Similarity=-0.026 Sum_probs=28.8
Q ss_pred CHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCcccc
Q 028736 81 TQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFP 134 (204)
Q Consensus 81 C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (204)
|+.-+-..++..+++... +.+.|-+|+ +.+...+.+|+.+ .|..+-
T Consensus 9 CP~Pvi~~kkal~~l~~G--~~l~V~~d~-----~~s~~ni~~~~~~-~g~~v~ 54 (69)
T cd03422 9 CPYPAIATLEALPSLKPG--EILEVISDC-----PQSINNIPIDARN-HGYKVL 54 (69)
T ss_pred CCHHHHHHHHHHHcCCCC--CEEEEEecC-----chHHHHHHHHHHH-cCCEEE
Confidence 776666777777777653 233333332 5688899999954 365553
No 363
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=22.87 E-value=2.9e+02 Score=23.48 Aligned_cols=12 Identities=8% Similarity=0.199 Sum_probs=7.1
Q ss_pred eEEecCCCCeee
Q 028736 49 FTVKDIRGNDVS 60 (204)
Q Consensus 49 ~~l~~~~g~~~~ 60 (204)
+.+.+.+|..+.
T Consensus 108 iK~~~~~G~~i~ 119 (443)
T PRK10887 108 IKFFSADGTKLP 119 (443)
T ss_pred EEEECCCCCCCC
Confidence 566666665543
No 364
>PF14903 WG_beta_rep: WG containing repeat
Probab=22.86 E-value=60 Score=16.11 Aligned_cols=11 Identities=36% Similarity=0.670 Sum_probs=9.0
Q ss_pred EECCCCcEEEe
Q 028736 173 LVNKEGKVVER 183 (204)
Q Consensus 173 lid~~G~i~~~ 183 (204)
+||.+|+++-.
T Consensus 3 ~id~~G~~vi~ 13 (35)
T PF14903_consen 3 YIDKNGKIVIP 13 (35)
T ss_pred EEeCCCCEEEE
Confidence 68999998864
No 365
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=22.70 E-value=86 Score=20.72 Aligned_cols=19 Identities=11% Similarity=0.293 Sum_probs=15.9
Q ss_pred eeEEECCCCcEEEecCCCC
Q 028736 170 TKFLVNKEGKVVERYAPTT 188 (204)
Q Consensus 170 ~~~lid~~G~i~~~~~g~~ 188 (204)
..|+.||+|+.+..+.|..
T Consensus 94 ~~~f~DPdG~~ie~~~~~~ 112 (121)
T cd07244 94 SFYFLDPDGHKLELHVGSL 112 (121)
T ss_pred EEEEECCCCCEEEEEeCCH
Confidence 5689999999999887753
No 366
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=22.69 E-value=15 Score=16.31 Aligned_cols=16 Identities=13% Similarity=0.438 Sum_probs=8.0
Q ss_pred CCCCHHhHHHHHHHHH
Q 028736 78 CGLTQSNYKELNVLYE 93 (204)
Q Consensus 78 C~~C~~~~~~l~~l~~ 93 (204)
|+.|...+.....+..
T Consensus 3 C~~C~~~~~~~~~l~~ 18 (24)
T PF13894_consen 3 CPICGKSFRSKSELRQ 18 (24)
T ss_dssp -SSTS-EESSHHHHHH
T ss_pred CcCCCCcCCcHHHHHH
Confidence 6777666555555443
No 367
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=22.54 E-value=93 Score=22.55 Aligned_cols=42 Identities=17% Similarity=0.304 Sum_probs=29.2
Q ss_pred EEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCccc
Q 028736 72 VNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEF 133 (204)
Q Consensus 72 ~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (204)
.=-++.|..|......-.+.+++- .+..++++++.++|...|
T Consensus 108 d~Hg~~C~vCl~ia~~a~~~~~~G--------------------ks~~eIR~~ID~kYk~g~ 149 (158)
T PF13798_consen 108 DDHGTRCGVCLDIAVQAVQMYQEG--------------------KSPKEIRQYIDEKYKEGY 149 (158)
T ss_pred cccccccHHHHHHHHHHHHHHHcC--------------------CCHHHHHHHHHHHHHhCC
Confidence 334678999987776666665542 278899999988765443
No 368
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=22.53 E-value=32 Score=26.66 Aligned_cols=27 Identities=15% Similarity=0.386 Sum_probs=19.1
Q ss_pred ccCCCCCHHhHHHHHHHHHHhcCCCeE
Q 028736 75 ASKCGLTQSNYKELNVLYEKYKNQDFE 101 (204)
Q Consensus 75 ~t~C~~C~~~~~~l~~l~~~~~~~~~~ 101 (204)
-.||=+|.+++..=+-|.+..+.+.+.
T Consensus 10 kpwcwycnrefddekiliqhqkakhfk 36 (341)
T KOG2893|consen 10 KPWCWYCNREFDDEKILIQHQKAKHFK 36 (341)
T ss_pred Cceeeecccccchhhhhhhhhhhccce
Confidence 379999999988766666665554443
No 369
>CHL00133 psbV photosystem II cytochrome c550; Validated
Probab=22.34 E-value=23 Score=25.82 Aligned_cols=26 Identities=38% Similarity=0.626 Sum_probs=18.6
Q ss_pred cCCCCeeecCCC---CCcEEEEEEeccCCCCCH
Q 028736 53 DIRGNDVSLSGY---RGKVLLVVNVASKCGLTQ 82 (204)
Q Consensus 53 ~~~g~~~~l~~~---~gk~~lv~f~~t~C~~C~ 82 (204)
|.+|+++.++.- +||-+ |...|..|=
T Consensus 39 ~~~g~~~~~t~~~~~~Gk~l----F~~~CaaCH 67 (163)
T CHL00133 39 DSSGKTVVLTPEQVKRGKRL----FNASCGACH 67 (163)
T ss_pred CCCCCeEeeCHHHHHHHHHH----HHhhHHHhC
Confidence 567888888774 67665 256888886
No 370
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=21.81 E-value=5.4e+02 Score=22.43 Aligned_cols=33 Identities=12% Similarity=-0.112 Sum_probs=25.4
Q ss_pred CCCcccceEEecCCCCeeecCCCCC-cEEEEEEe
Q 028736 42 APKSIYDFTVKDIRGNDVSLSGYRG-KVLLVVNV 74 (204)
Q Consensus 42 ~~~~~p~~~l~~~~g~~~~l~~~~g-k~~lv~f~ 74 (204)
.|..+|+..+.+.+|....+.+..| .++||.|.
T Consensus 413 ~G~~~p~~~~~~~~~~~~~~d~~~~~~~~ll~~~ 446 (538)
T PRK06183 413 VGTLFPQPRVELGGGDRGLLDDVLGPGFAVLGWG 446 (538)
T ss_pred cccCcCCCeeEcCCCCcccchhccCCceEEEEec
Confidence 7889999988877666556777766 78888773
No 371
>PRK14048 ferrichrome/ferrioxamine B periplasmic transporter; Provisional
Probab=21.59 E-value=1.9e+02 Score=23.83 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=14.6
Q ss_pred ceEEecCCCCeeecCCCCCcEE
Q 028736 48 DFTVKDIRGNDVSLSGYRGKVL 69 (204)
Q Consensus 48 ~~~l~~~~g~~~~l~~~~gk~~ 69 (204)
..+++|..|+++++.+--.|.+
T Consensus 31 ~~tvtD~~Gr~V~ip~~p~RIv 52 (374)
T PRK14048 31 PMTVTDAVGREVTIPAPPKAVL 52 (374)
T ss_pred CeEEEeCCCCEEecCCCCcEEE
Confidence 5677777787777766544544
No 372
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=21.54 E-value=1.9e+02 Score=20.29 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=22.8
Q ss_pred eeeEEECCCCcEEEec----CCCCChhHHHHHHHHhhh
Q 028736 169 FTKFLVNKEGKVVERY----APTTSPLKIEKDIQNLLG 202 (204)
Q Consensus 169 P~~~lid~~G~i~~~~----~g~~~~~~~~~~l~~ll~ 202 (204)
|.+-|+ +||++++.. .-..+++.+.+.|..+.+
T Consensus 97 PS~ALf-KdGelvh~ieRh~IEGr~a~~Ia~~L~~af~ 133 (136)
T PF06491_consen 97 PSIALF-KDGELVHFIERHHIEGRPAEEIAENLQDAFD 133 (136)
T ss_dssp SEEEEE-ETTEEEEEE-GGGTTTS-HHHHHHHHHHHHH
T ss_pred chheee-eCCEEEEEeehhhcCCCCHHHHHHHHHHHHH
Confidence 777777 799999852 122367788888887653
No 373
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=21.53 E-value=1.3e+02 Score=21.25 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=26.0
Q ss_pred EEEEeccCCCCCHH-------hHHHHHHHHHHhcCCCeEEEEEe
Q 028736 70 LVVNVASKCGLTQS-------NYKELNVLYEKYKNQDFEVLAFP 106 (204)
Q Consensus 70 lv~f~~t~C~~C~~-------~~~~l~~l~~~~~~~~~~~i~v~ 106 (204)
=|.|-+|.|-.|.. .-.+++++.++|+..++.+|-=+
T Consensus 32 evvfs~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVvlG~ 75 (150)
T PF04723_consen 32 EVVFSSTECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVVLGA 75 (150)
T ss_pred eEEEEeeeEEEecccccccHHHHHHHHHHHHhcCCccEEEEecC
Confidence 35688899988863 34577888888888766555443
No 374
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=21.32 E-value=3.1e+02 Score=23.28 Aligned_cols=12 Identities=8% Similarity=0.022 Sum_probs=7.6
Q ss_pred eEEecCCCCeee
Q 028736 49 FTVKDIRGNDVS 60 (204)
Q Consensus 49 ~~l~~~~g~~~~ 60 (204)
+.+.+.+|..+.
T Consensus 107 iK~~~~~G~~i~ 118 (443)
T TIGR01455 107 IKFFGPGGFKLD 118 (443)
T ss_pred EEEecCCCCcCC
Confidence 667666665554
No 375
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=21.30 E-value=1.6e+02 Score=24.81 Aligned_cols=20 Identities=10% Similarity=-0.059 Sum_probs=15.0
Q ss_pred cccceeeEEECCCCcEEEec
Q 028736 165 IKWNFTKFLVNKEGKVVERY 184 (204)
Q Consensus 165 i~~~P~~~lid~~G~i~~~~ 184 (204)
|.+.-++++|.++|..+-..
T Consensus 317 Vaqf~~Tv~v~~~g~~~~t~ 336 (389)
T TIGR00495 317 VAQFKFTVLLMPNGPMRITS 336 (389)
T ss_pred EEEEEEEEEECCCCcEEeCC
Confidence 44446889999999987553
No 376
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=21.25 E-value=3.9e+02 Score=20.64 Aligned_cols=41 Identities=12% Similarity=0.074 Sum_probs=23.9
Q ss_pred CHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCcccc
Q 028736 81 TQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFP 134 (204)
Q Consensus 81 C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (204)
.+.....++++. ++|+.++-.+ ..+...+++++ ++.+.+.+
T Consensus 21 ~~~~~~ai~~l~----~~G~~~~iaT--------GR~~~~~~~~~-~~l~~~~~ 61 (272)
T PRK15126 21 GEKTLSTLARLR----ERDITLTFAT--------GRHVLEMQHIL-GALSLDAY 61 (272)
T ss_pred CHHHHHHHHHHH----HCCCEEEEEC--------CCCHHHHHHHH-HHcCCCCc
Confidence 444555555544 4577777776 34666777777 44465544
No 377
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.13 E-value=1.6e+02 Score=21.97 Aligned_cols=7 Identities=14% Similarity=0.112 Sum_probs=3.6
Q ss_pred cEEEEEE
Q 028736 67 KVLLVVN 73 (204)
Q Consensus 67 k~~lv~f 73 (204)
+|+|..|
T Consensus 80 ~P~l~lf 86 (188)
T COG3117 80 APVLTLF 86 (188)
T ss_pred cceEEEE
Confidence 4555555
No 378
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=21.10 E-value=1e+02 Score=20.33 Aligned_cols=18 Identities=11% Similarity=0.087 Sum_probs=14.5
Q ss_pred eeEEECCCCcEEEecCCC
Q 028736 170 TKFLVNKEGKVVERYAPT 187 (204)
Q Consensus 170 ~~~lid~~G~i~~~~~g~ 187 (204)
..++.||+|+.+..+.+.
T Consensus 101 ~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 101 LIRFADPDGNRHELFWGP 118 (120)
T ss_pred EEEEECCCCCEEEEEecc
Confidence 469999999999877553
No 379
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.08 E-value=1.1e+02 Score=20.15 Aligned_cols=17 Identities=6% Similarity=0.010 Sum_probs=13.5
Q ss_pred eeeEEECCCCcEEEecC
Q 028736 169 FTKFLVNKEGKVVERYA 185 (204)
Q Consensus 169 P~~~lid~~G~i~~~~~ 185 (204)
...++.||+|+++....
T Consensus 102 r~~~~~DPdGn~iei~~ 118 (120)
T cd09011 102 RVVRFYDPDKHIIEVGE 118 (120)
T ss_pred EEEEEECCCCCEEEEec
Confidence 35689999999987653
No 380
>PRK08671 methionine aminopeptidase; Provisional
Probab=21.06 E-value=1.1e+02 Score=24.32 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCC-HHHHHHHHHhhcCccccceeeccCCCCCchhHHHHHHhhcCCcccc
Q 028736 85 YKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGS-NEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGD 163 (204)
Q Consensus 85 ~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 163 (204)
-..|+++.++|+.-.+..-.+. + +... ...+++-++...-.+||++ .+..+..+.|
T Consensus 218 r~~~~~i~~~~~~~pF~~r~l~--~----~~~~~~~~~~~~~~~~~~~~yp~l--~e~~~~~vaq--------------- 274 (291)
T PRK08671 218 RKLLEEIEEEYNTLPFAERWLE--G----LFGEDKLELRRLLKAGALYGYPVL--KEVKGGLVSQ--------------- 274 (291)
T ss_pred HHHHHHHHHHCCCCCcchHHhh--c----cchhhHHHHHHHHHCCCcccCCcc--EecCCCEEEE---------------
Confidence 3455666666665444333332 0 0001 1114555533333468887 4445444433
Q ss_pred ccccceeeEEECCCCcEE
Q 028736 164 AIKWNFTKFLVNKEGKVV 181 (204)
Q Consensus 164 ~i~~~P~~~lid~~G~i~ 181 (204)
.-+++++.++|.++
T Consensus 275 ----~~~Tv~v~~~g~~~ 288 (291)
T PRK08671 275 ----AEHTVIVTEDGCEV 288 (291)
T ss_pred ----EEEEEEECCCCcEE
Confidence 36789999999876
No 381
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=20.92 E-value=1.2e+02 Score=24.01 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=20.9
Q ss_pred eeEEECCCCcEEEecCCCCChhHHHHHHH
Q 028736 170 TKFLVNKEGKVVERYAPTTSPLKIEKDIQ 198 (204)
Q Consensus 170 ~~~lid~~G~i~~~~~g~~~~~~~~~~l~ 198 (204)
.+|+|+.+|+|..+..|+.+. ...+.|+
T Consensus 233 mtF~Vn~~g~VYqkDLG~~t~-~~A~ai~ 260 (271)
T PF11453_consen 233 MTFMVNQDGQVYQKDLGPDTA-AKAAAIT 260 (271)
T ss_pred EEEEECCCCcEEecccCcchH-HHhhhhh
Confidence 468999999999999887554 4444443
No 382
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=20.89 E-value=28 Score=24.56 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=14.0
Q ss_pred cCCCCCHHhHHHHHHHHH
Q 028736 76 SKCGLTQSNYKELNVLYE 93 (204)
Q Consensus 76 t~C~~C~~~~~~l~~l~~ 93 (204)
..||.|+...|.|.-...
T Consensus 10 i~CPhCRQ~ipALtLTDt 27 (163)
T TIGR02652 10 IRCPHCRQNIPALTLTDT 27 (163)
T ss_pred CcCchhhcccchheecce
Confidence 589999999998765433
No 383
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=20.75 E-value=1.7e+02 Score=21.65 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=16.1
Q ss_pred eeEEECCCCcEEEecCCC-CChhHHHH
Q 028736 170 TKFLVNKEGKVVERYAPT-TSPLKIEK 195 (204)
Q Consensus 170 ~~~lid~~G~i~~~~~g~-~~~~~~~~ 195 (204)
..|+|+++|+|...+... .+.+.+.+
T Consensus 37 NvyIis~kGkiLGy~~~~~~~~~~~~~ 63 (177)
T PF06018_consen 37 NVYIISRKGKILGYSFIDDFECDRMEE 63 (177)
T ss_dssp EEEEEETTSBEEEEE-SS----HHHHH
T ss_pred cEEEEeCCccEEEEeccCCCCcHHHHH
Confidence 459999999999986442 23334444
No 384
>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.
Probab=20.70 E-value=3.1e+02 Score=22.03 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=26.2
Q ss_pred CCCeeecCCCCCcEEEEEEeccCCCCCHHhHHHHHHHHHHhc
Q 028736 55 RGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYK 96 (204)
Q Consensus 55 ~g~~~~l~~~~gk~~lv~f~~t~C~~C~~~~~~l~~l~~~~~ 96 (204)
+|..+.+-++++..+.|.|-. -|..|+.-.-.|+.+.+.++
T Consensus 238 dGGdv~lv~v~~~~v~v~l~G-aC~gC~~s~~Tl~~Ie~~l~ 278 (290)
T TIGR02000 238 DGGDVELYDVDGKIVYVVLTG-ACSGCSMSTMTLKGIQQRLR 278 (290)
T ss_pred cCCcEEEEEEeCCEEEEEEee-CCCCCcchHHHHHHHHHHHH
Confidence 888999988887777777765 45555544444444444443
No 385
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=20.47 E-value=29 Score=24.48 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=13.9
Q ss_pred cCCCCCHHhHHHHHHHHH
Q 028736 76 SKCGLTQSNYKELNVLYE 93 (204)
Q Consensus 76 t~C~~C~~~~~~l~~l~~ 93 (204)
..||.|+...|.|.-...
T Consensus 7 i~CPhCRq~ipALtLTDt 24 (161)
T PF09654_consen 7 IQCPHCRQTIPALTLTDT 24 (161)
T ss_pred CcCchhhcccchheecce
Confidence 479999999998765433
No 386
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=20.38 E-value=3.5e+02 Score=23.07 Aligned_cols=12 Identities=17% Similarity=0.135 Sum_probs=7.8
Q ss_pred eEEecCCCCeee
Q 028736 49 FTVKDIRGNDVS 60 (204)
Q Consensus 49 ~~l~~~~g~~~~ 60 (204)
+.+.+.+|..++
T Consensus 111 iK~~~~~G~~i~ 122 (448)
T PRK14315 111 IKLFGPDGFKLS 122 (448)
T ss_pred EEEECCCCCcCC
Confidence 667777776543
No 387
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=20.26 E-value=2.1e+02 Score=17.09 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=28.7
Q ss_pred CHHhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHhhcCcccc
Q 028736 81 TQSNYKELNVLYEKYKNQDFEVLAFPCNQFAGQEPGSNEEIQEVACTMFKAEFP 134 (204)
Q Consensus 81 C~~~~~~l~~l~~~~~~~~~~~i~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (204)
|+.-+-..++..+++...+. +-|-+|+ +.+.+.+.+|++.. |..+-
T Consensus 9 CP~P~i~~k~~l~~l~~G~~--l~V~~dd-----~~s~~di~~~~~~~-g~~~~ 54 (69)
T cd03423 9 CPEPVMMLHKKVRKMKPGDT--LLVLATD-----PSTTRDIPKFCTFL-GHELL 54 (69)
T ss_pred CCHHHHHHHHHHHcCCCCCE--EEEEeCC-----CchHHHHHHHHHHc-CCEEE
Confidence 77777777777777765332 2223332 46888999999643 65543
No 388
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=20.22 E-value=53 Score=27.22 Aligned_cols=23 Identities=9% Similarity=0.176 Sum_probs=20.5
Q ss_pred ccCCCCCHHhHHHHHHHHHHhcC
Q 028736 75 ASKCGLTQSNYKELNVLYEKYKN 97 (204)
Q Consensus 75 ~t~C~~C~~~~~~l~~l~~~~~~ 97 (204)
-++||.|...+..|+++.+++.+
T Consensus 94 ~t~~p~~~~~~~~lq~~~~~lN~ 116 (361)
T PF06122_consen 94 QTLCPQCGNIMDKLQKIAQALNQ 116 (361)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHh
Confidence 38999999999999999998765
No 389
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=20.08 E-value=75 Score=25.58 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=16.1
Q ss_pred ccCCCCCHHhHHHHHHHHHHhc
Q 028736 75 ASKCGLTQSNYKELNVLYEKYK 96 (204)
Q Consensus 75 ~t~C~~C~~~~~~l~~l~~~~~ 96 (204)
.+|||.|. +...++-+.+.++
T Consensus 15 ~~~CpGCG-~~~~l~~i~~a~~ 35 (294)
T COG1013 15 TRWCPGCG-EFIILKLLTQALG 35 (294)
T ss_pred CCcCCCCC-chHHHHHHHHhcc
Confidence 36999999 7777777777644
No 390
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=20.05 E-value=1e+02 Score=18.21 Aligned_cols=30 Identities=3% Similarity=-0.016 Sum_probs=16.8
Q ss_pred EEeccCCCCCHHhHHHHHHHHHHhcCCCeEEEEEe
Q 028736 72 VNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFP 106 (204)
Q Consensus 72 ~f~~t~C~~C~~~~~~l~~l~~~~~~~~~~~i~v~ 106 (204)
.|+.++||.|.+-.-.+... +..++.+.|.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~-----gi~~e~~~i~ 32 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKAL-----GLELNLKEVN 32 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHc-----CCCCEEEEec
Confidence 45667899998544444332 2235555554
Done!