BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028737
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XI05|PSB3A_ARATH Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1
PE=1 SV=2
Length = 204
Score = 400 bits (1027), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/204 (93%), Positives = 198/204 (97%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI EYNGSA+VAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDR+FIGLSGLATD
Sbjct: 1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDV 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
QTLYQRLVFRHKLYQLREERDMKPETFASLVSA+LYEKRFGPY CQPVIAGL D+DKPFI
Sbjct: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFI 120
Query: 121 CTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLS 180
CTMDSIGAKELAKDFVV+GTA ESLYGACEAM+KPDME +ELFET+SQALLSSVDRDCLS
Sbjct: 121 CTMDSIGAKELAKDFVVSGTASESLYGACEAMYKPDMEAEELFETISQALLSSVDRDCLS 180
Query: 181 GWGGHVYIVTPTEIKERILKGRMD 204
GWGGHVYIVTPTEIKERILKGRMD
Sbjct: 181 GWGGHVYIVTPTEIKERILKGRMD 204
>sp|O81153|PSB3B_ARATH Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2
PE=1 SV=1
Length = 204
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/204 (91%), Positives = 196/204 (96%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI EYNGSA+VAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHD LFIGLSGLATD
Sbjct: 1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDV 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
QTLYQRLVFRHKLYQLREERDMKPETFASLVSA+LYEKRFGP+ CQPVIAGL D++KPFI
Sbjct: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFI 120
Query: 121 CTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLS 180
CTMDSIGAKELAKDFVV+GTA ESLYGACEAMFKPDME +ELFET+SQALLSSVDRDCLS
Sbjct: 121 CTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLS 180
Query: 181 GWGGHVYIVTPTEIKERILKGRMD 204
GWGGHVY+VTP E+KERILKGRMD
Sbjct: 181 GWGGHVYVVTPKEVKERILKGRMD 204
>sp|O65084|PSB3_PICMA Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1
Length = 204
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 178/204 (87%), Positives = 194/204 (95%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRI KIHD+L++GLSGLATD
Sbjct: 1 MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDV 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
QTLYQR FRHKLYQLREER+M+PETFASLVSALLYEKRFGPYFCQPVIAGL ++DKPFI
Sbjct: 61 QTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFI 120
Query: 121 CTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLS 180
CTMDSIGAKELAKDFVVAGTA ESLYGACE+M+KPDMEP+ELFET+SQALLSS+DRDCLS
Sbjct: 121 CTMDSIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCLS 180
Query: 181 GWGGHVYIVTPTEIKERILKGRMD 204
GWGGHVY+V+P ++ ER LKGRMD
Sbjct: 181 GWGGHVYVVSPNQVIERTLKGRMD 204
>sp|Q9LST7|PSB3_ORYSJ Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica
GN=PBC1 PE=2 SV=1
Length = 204
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 174/204 (85%), Positives = 195/204 (95%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI EYNGSA+VAMVGKNCFAIASDRRLGVQLQT+ATDFQR+ KIHD+L+IGLSGLATD+
Sbjct: 1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDA 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
QTLYQRLVFRHKLYQLREERDMKP+TFASLVSALLYEKRFGPYFCQPVIAGL ++++PFI
Sbjct: 61 QTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFI 120
Query: 121 CTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLS 180
CTMD IGAKELAKDFVV+GTA ESLYGACE+M+KP+MEP+ELFET+SQAL SSVDRDCLS
Sbjct: 121 CTMDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALQSSVDRDCLS 180
Query: 181 GWGGHVYIVTPTEIKERILKGRMD 204
GWGG V +VTPTE+KE ++KGRMD
Sbjct: 181 GWGGFVLLVTPTEVKECVIKGRMD 204
>sp|Q9Y7T8|PSB3_SCHPO Probable proteasome subunit beta type-3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pup3 PE=3 SV=1
Length = 204
Score = 260 bits (665), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 115/204 (56%), Positives = 161/204 (78%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI EYNG + VAM GKNC AIASD RLGVQ ++ +F ++ + D+ ++GL+GLATD
Sbjct: 1 MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDV 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
QTLY+ ++ LY+ REER ++P+TFA+LVS+ LYEKRFGPYF PV+AG+S+++ PFI
Sbjct: 61 QTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFI 120
Query: 121 CTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLS 180
C DSIG + A+DF+V+GTA E LYG CE++++P++EPD+LFET+SQALL++ DRDC+S
Sbjct: 121 CGFDSIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCIS 180
Query: 181 GWGGHVYIVTPTEIKERILKGRMD 204
GWG VY++T + +R++KGR D
Sbjct: 181 GWGCVVYVITADKCIKRLVKGRQD 204
>sp|Q55D66|PSB3_DICDI Proteasome subunit beta type-3 OS=Dictyostelium discoideum GN=psmB3
PE=3 SV=1
Length = 205
Score = 258 bits (659), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 116/205 (56%), Positives = 152/205 (74%), Gaps = 1/205 (0%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI YNG A + MVGKNC AIASD R G+Q QTI+ DF ++ +I+D+ F+G+SGL TD+
Sbjct: 1 MSIMAYNGGACIVMVGKNCVAIASDLRFGIQQQTISNDFPKVYRINDKCFVGISGLVTDA 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDK-PF 119
QTLYQ+LVFRH LY+LREERDM P ++L++ +LYEKRFGPYF +P+I GL D PF
Sbjct: 61 QTLYQKLVFRHNLYKLREERDMSPRVVSNLLTNMLYEKRFGPYFTEPLICGLEGPDNTPF 120
Query: 120 ICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCL 179
I MD IGA DF+V GT ++YG CE ++K DM D+LFET+SQ +L+S+DRD L
Sbjct: 121 ISGMDLIGASVATDDFLVVGTMTPAMYGVCETLYKKDMNEDDLFETISQCMLASLDRDAL 180
Query: 180 SGWGGHVYIVTPTEIKERILKGRMD 204
SGWG V+++TPT++ + L GR D
Sbjct: 181 SGWGAIVHVITPTQVITKKLLGRQD 205
>sp|P49720|PSB3_HUMAN Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2
Length = 205
Score = 252 bits (643), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 118/205 (57%), Positives = 155/205 (75%), Gaps = 1/205 (0%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I + DRL+IGL+GLATD
Sbjct: 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPF 119
QT+ QRL FR LY+L+E R +KP T S+V+ LLYEKRFGPY+ +PVIAGL + KPF
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 120 ICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCL 179
IC++D IG + DFVV+GT E +YG CE++++P+M+PD LFET+SQA+L++VDRD +
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGGHVYIVTPTEIKERILKGRMD 204
SG G V+I+ +I R LK RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>sp|O73817|PSB3_ONCMY Proteasome subunit beta type-3 OS=Oncorhynchus mykiss GN=psmb3 PE=2
SV=1
Length = 205
Score = 251 bits (642), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 118/205 (57%), Positives = 157/205 (76%), Gaps = 1/205 (0%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI YNG A++AM GK C AIA+DRR GVQ Q + TDFQ+I + DRL+IGL+GLATD
Sbjct: 1 MSIMSYNGGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPF 119
QT+ QRL FR LY+L+E R +KP+TF S+VS LLYE+RFGPY+ +PVIAGL + +PF
Sbjct: 61 QTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPF 120
Query: 120 ICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCL 179
IC++D IG + +DFVV+GT E +YG CE++++PDMEP++LFET+SQA+L++VDRD +
Sbjct: 121 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 180
Query: 180 SGWGGHVYIVTPTEIKERILKGRMD 204
SG G V ++ +I R LK RMD
Sbjct: 181 SGMGVVVQVIEKDKITTRTLKARMD 205
>sp|P33672|PSB3_BOVIN Proteasome subunit beta type-3 OS=Bos taurus GN=PSMB3 PE=1 SV=3
Length = 205
Score = 249 bits (637), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 117/205 (57%), Positives = 155/205 (75%), Gaps = 1/205 (0%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I + DRL+IGL+GLATD
Sbjct: 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPF 119
QT+ QRL FR LY+L+E R +KP T S+V+ LLYEKRFGPY+ +PVIAGL + KPF
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 120 ICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCL 179
IC++D IG + DFVV+GT E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCTEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGGHVYIVTPTEIKERILKGRMD 204
SG G V+I+ +I R LK RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>sp|P40112|PSB3_RAT Proteasome subunit beta type-3 OS=Rattus norvegicus GN=Psmb3 PE=1
SV=1
Length = 205
Score = 249 bits (636), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 116/205 (56%), Positives = 155/205 (75%), Gaps = 1/205 (0%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MS+ YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I + DRL+IGL+GLATD
Sbjct: 1 MSVMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPF 119
QT+ QRL FR LY+L+E R +KP T S+V+ LLYEKRFGPY+ +PVIAGL + KPF
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 120 ICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCL 179
IC++D IG + DFVV+GT E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGGHVYIVTPTEIKERILKGRMD 204
SG G V+I+ +I R LK RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>sp|Q9R1P1|PSB3_MOUSE Proteasome subunit beta type-3 OS=Mus musculus GN=Psmb3 PE=1 SV=1
Length = 205
Score = 249 bits (636), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 116/205 (56%), Positives = 155/205 (75%), Gaps = 1/205 (0%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I + DRL+IGL+GLATD
Sbjct: 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPF 119
QT+ QRL FR LY+L+E R +KP T S+V+ LLYEKRFGPY+ +PVIAGL + KPF
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 120 ICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCL 179
IC++D IG + DFVV+GT E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGGHVYIVTPTEIKERILKGRMD 204
SG G V+++ +I R LK RMD
Sbjct: 181 SGMGVIVHVIEKDKITTRTLKARMD 205
>sp|Q9XYN7|PSB3_DROME Proteasome subunit beta type-3 OS=Drosophila melanogaster
GN=Prosbeta3 PE=2 SV=1
Length = 205
Score = 244 bits (624), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 111/205 (54%), Positives = 150/205 (73%), Gaps = 1/205 (0%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI YNG +VAM GK+C AIA+D R G+Q QTI+TDF+++ I R+F+GL+GL TD
Sbjct: 1 MSILAYNGGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMFLGLTGLQTDI 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPF 119
T+ RL+FR LY+ RE R+M P+ F++++S+ LYE RFGPYF +PV+AGL + +PF
Sbjct: 61 LTVRDRLMFRKNLYETRENREMCPKPFSAMMSSFLYEHRFGPYFIEPVVAGLDPKTMEPF 120
Query: 120 ICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCL 179
IC MD IG DFVVAGT E LYG CE ++KPD+EPD+LFE ++Q+++++ DRD +
Sbjct: 121 ICNMDLIGCPNAPDDFVVAGTCAEQLYGMCETLWKPDLEPDQLFEVIAQSIVNAFDRDAM 180
Query: 180 SGWGGHVYIVTPTEIKERILKGRMD 204
SGWG VYI+ +I ER LK RMD
Sbjct: 181 SGWGATVYIIEKDKITERTLKTRMD 205
>sp|Q23237|PSB3_CAEEL Proteasome subunit beta type-3 OS=Caenorhabditis elegans GN=pbs-3
PE=1 SV=1
Length = 204
Score = 221 bits (563), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 141/204 (69%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI Y G +VAM G C IASD R+G Q+ TIATD +++ K+ D++++GL+G +D+
Sbjct: 1 MSIMSYTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDA 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
+T+ ++++FR LY+LRE R++KP+ + ++S L Y+ RFG YF +P++AGL D +KP+I
Sbjct: 61 RTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYI 120
Query: 121 CTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLS 180
C MD+IG +DFV GT E L G CE ++ +M+PDELFE +Q++LS ++RD S
Sbjct: 121 CCMDTIGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAAS 180
Query: 181 GWGGHVYIVTPTEIKERILKGRMD 204
GWG VY +T ++ +K RMD
Sbjct: 181 GWGAVVYTITKDKVNVSTIKARMD 204
>sp|P25451|PSB3_YEAST Proteasome subunit beta type-3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PUP3 PE=1 SV=1
Length = 205
Score = 214 bits (546), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 102/199 (51%), Positives = 143/199 (71%), Gaps = 2/199 (1%)
Query: 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQR 66
NG +VAM GK+C AIA D RLG Q ++ F++I + +F+G++GLATD TL +
Sbjct: 8 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFH-YGHVFLGITGLATDVTTLNEM 66
Query: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGL-SDEDKPFICTMDS 125
++ LY+L+EER ++PETF LVS+ LYE+RFGPYF PV+AG+ S KPFI D
Sbjct: 67 FRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDL 126
Query: 126 IGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGH 185
IG + AKDF+V+GTA + L+G CE++++P++EP++LFET+SQALL++ DRD LSGWG
Sbjct: 127 IGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAV 186
Query: 186 VYIVTPTEIKERILKGRMD 204
VYI+ E+ +R LK R D
Sbjct: 187 VYIIKKDEVVKRYLKMRQD 205
>sp|Q9NDA1|PSB3_TRYBB Proteasome subunit beta type-3 OS=Trypanosoma brucei brucei GN=PSB3
PE=2 SV=1
Length = 205
Score = 209 bits (533), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 145/205 (70%), Gaps = 1/205 (0%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
MSI Y+G + +AM GK CF + SD RLG QL+TI+ + ++ I+D + +GL+GL TD
Sbjct: 1 MSILTYSGGSCLAMAGKECFVVISDNRLGEQLKTISMEVPKLHVINDGIVMGLTGLRTDQ 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPF 119
QT Q++ FR ++Y+LREERD+ + FA+LVS++LYE RFGP+F +PVI + + + +
Sbjct: 61 QTFAQKVNFRTEMYKLREERDINGKAFAALVSSMLYEARFGPWFVEPVIGTIDRKTGEVY 120
Query: 120 ICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCL 179
+C D IGA +D+V AGT ESL+G CEA+++P +EP+ELFE +QA+LS+ DRD L
Sbjct: 121 LCATDLIGAPCEPEDYVCAGTCAESLHGMCEALWRPGLEPEELFEVAAQAMLSACDRDSL 180
Query: 180 SGWGGHVYIVTPTEIKERILKGRMD 204
SG+G IVT ++ R++KGR D
Sbjct: 181 SGYGAVAAIVTKDKLVTRLIKGRKD 205
>sp|Q9N9W8|PSB3_GIAIN Proteasome subunit beta type-3 OS=Giardia intestinalis GN=PRSBETA3
PE=2 SV=1
Length = 207
Score = 174 bits (442), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 122/189 (64%), Gaps = 1/189 (0%)
Query: 2 SITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIAT-DFQRISKIHDRLFIGLSGLATDS 60
+I EYNGSAL+ + G +C A+A+D+RLG QT+ + +RI ++ +GL+GL TD
Sbjct: 3 NIWEYNGSALIGIKGXDCVALAADKRLGCSYQTLTIGNEERIFRLSQSCLLGLAGLQTDV 62
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
T Y+++ + LY L+E+R+++P A ++S+ LY+ RFGPYF P+IAG + KP++
Sbjct: 63 LTTYRQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEADGKPYL 122
Query: 121 CTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLS 180
MD+IG + +F +AGTA + L G CE KPDM DE+ + Q + S+ +RD S
Sbjct: 123 GAMDTIGCLDDCTNFQIAGTASDFLLGLCETHVKPDMSEDEILPLMEQIIRSATNRDAYS 182
Query: 181 GWGGHVYIV 189
GWG HV ++
Sbjct: 183 GWGAHVVVL 191
>sp|Q0W2D6|PSB_UNCMA Proteasome subunit beta OS=Uncultured methanogenic archaeon RC-I
GN=psmB PE=3 SV=1
Length = 208
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 100/199 (50%), Gaps = 3/199 (1%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
M +Y G+ + ++ +A++RR + + D Q+I +I D + ++G D
Sbjct: 2 MEDKQYKGTTTIGIICDQGVVLATERRATMGNFIASRDAQKIYRITDNAAMTIAGSVGDG 61
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
Q L + L KL++LR M + L+S +L E R+ PY+ Q +I GL D+ P I
Sbjct: 62 QRLARILQVEAKLFELRRHGSMSINALSMLLSNILAEMRYAPYYVQVLIGGL-DKAGPKI 120
Query: 121 CTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLS 180
++D +G + + FV G+ YG E +KP M +E E ++AL S++ RD S
Sbjct: 121 YSLDPLGGRIEEEKFVSTGSGSPIAYGVLEDRYKPGMSVEEGVELAARALESAMKRDSAS 180
Query: 181 GWGGHVYIVTPT--EIKER 197
G G ++T EI ER
Sbjct: 181 GNGMQFCVITAEKFEIFER 199
>sp|A7I841|PSB_METB6 Proteasome subunit beta OS=Methanoregula boonei (strain 6A8)
GN=psmB PE=3 SV=1
Length = 213
Score = 96.7 bits (239), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 97/184 (52%), Gaps = 1/184 (0%)
Query: 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQR 66
G+ V +V +A+++R + + +++ +I DR+ + ++G D+Q L +
Sbjct: 10 TGTTTVGLVFAGGVILATEKRATMGYMIASKRAKKVYQIADRIGMTIAGGVGDAQQLARI 69
Query: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSI 126
+ LYQ+R R++ ++L+S L + R+ PY+ Q ++ G+ D+ P + ++D++
Sbjct: 70 ITVECNLYQIRRSREITVGAASTLLSNYLNQNRYFPYYVQLLVGGI-DDHGPSVYSVDAM 128
Query: 127 GAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHV 186
G +D V G+ YG E ++P M DE E +AL S++ RD SG G HV
Sbjct: 129 GGATKEEDIVSTGSGSPMAYGVLEDRYRPGMNEDEAVELAVRALRSAMKRDAGSGEGIHV 188
Query: 187 YIVT 190
++T
Sbjct: 189 VVIT 192
>sp|Q9P996|PSB_ARCFU Proteasome subunit beta OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=psmB PE=1 SV=1
Length = 213
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 98/196 (50%), Gaps = 4/196 (2%)
Query: 1 MSITE---YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLA 57
MS+ E Y G+ V +V K+ +A+++R + + ++I +I DR+ + +G
Sbjct: 1 MSMIEEKIYKGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSV 60
Query: 58 TDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDK 117
D+Q L + + LY++R ER A+L S LL R+ PY Q +I G+ E K
Sbjct: 61 GDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGK 120
Query: 118 PFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRD 177
I ++D IG KD V G+ + YG E F P++ DE E +A+ S++ RD
Sbjct: 121 S-IYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRD 179
Query: 178 CLSGWGGHVYIVTPTE 193
SG G V +T E
Sbjct: 180 SASGDGIDVVKITEDE 195
>sp|C9REN7|PSB_METVM Proteasome subunit beta OS=Methanocaldococcus vulcanius (strain
ATCC 700851 / DSM 12094 / M7) GN=psmB PE=3 SV=1
Length = 223
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 97/188 (51%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V ++ + +A+D+R + + +++ KI D + + ++G D+Q + + L
Sbjct: 6 GTTTVGLICDDAVILATDKRASMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRAL 65
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
+ +LY++R +++ P A+L+S +L+ R P+ Q +I G D P + ++D +G
Sbjct: 66 IAEARLYKMRTGKNISPRACATLLSNILHSSRMFPFLTQIIIGGYDLTDGPKLFSLDPLG 125
Query: 128 AKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVY 187
K F G+ YG EA + DM +E + +AL S+++RD SG G V
Sbjct: 126 GMNEEKTFTSTGSGSPIAYGVLEAEYDRDMSIEEGLKLALKALKSAMERDTYSGNGVSVA 185
Query: 188 IVTPTEIK 195
++T +K
Sbjct: 186 VITKEGVK 193
>sp|A3MXQ6|PSB2_PYRCJ Proteasome subunit beta 2 OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=psmB2 PE=3 SV=1
Length = 203
Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 102/193 (52%), Gaps = 2/193 (1%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V + K +A+++R+ T++T +++ ++DRL I +G+ D QTL + L
Sbjct: 8 GATAVGIKTKEGVVLAAEKRVSYGFYTLSTAGKKVFIVNDRLAIASAGIIADMQTLAKIL 67
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
K Y+L +R A L+S +++ +RF P+F + ++ G+ DE P + MD +G
Sbjct: 68 KLNAKAYELEMKRKPSVHAMAKLLSVVMFSRRFMPFFAEVLVGGIDDEG-PHLIVMDPLG 126
Query: 128 AKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVY 187
+ + ++ GT + +A +KPDM + + QAL ++++RD +SG G +
Sbjct: 127 SL-IEDNYAALGTGAKLAIAIIDASYKPDMSLQDAKKLAVQALKAALERDPVSGGGIDLV 185
Query: 188 IVTPTEIKERILK 200
++ +E +K
Sbjct: 186 VIDKNGAREEEVK 198
>sp|Q8ZST5|PSB2_PYRAE Proteasome subunit beta 2 OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=psmB2 PE=3 SV=1
Length = 203
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 102/189 (53%), Gaps = 2/189 (1%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V + K+ +A+++R+ T+++ +++ I D+L I +G+ D QTL + L
Sbjct: 8 GATAVGIKAKDGVVLAAEKRVSYGFYTLSSAGKKVFVIDDKLAIASAGIIADMQTLAKIL 67
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
K Y+L +R + A L+S +++ +RF P+F + ++ G+ DE+ P + MD +G
Sbjct: 68 KLNAKAYELEMKRKPSTHSMARLLSVIMFSRRFMPFFAEVLVGGI-DEEGPHLIVMDPLG 126
Query: 128 AKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVY 187
+ + ++ GT + + ++PD+ +E + QAL ++++RD +SG G +
Sbjct: 127 SL-IEDNYAALGTGAKLAVAVLDTGYRPDITVEEAKKLAVQALKAAIERDPVSGGGIDLA 185
Query: 188 IVTPTEIKE 196
IV +E
Sbjct: 186 IVDKNGARE 194
>sp|A2SS78|PSB_METLZ Proteasome subunit beta OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=psmB PE=3 SV=1
Length = 212
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 97/183 (53%), Gaps = 1/183 (0%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V +V +A++RR + + +++ I D++ + ++G D+Q L + +
Sbjct: 11 GTTTVGIVFDGGVILATERRATMGNLIASKKAKKVHAITDKIGMTIAGGVGDAQQLVRII 70
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
LY++R + + A+++S L + RF PY+ Q ++ G+ D P + ++D+ G
Sbjct: 71 NVECNLYEIRRGQKISVGAAATILSNYLNQNRFSPYYVQLLVGGV-DTSGPSVYSVDAAG 129
Query: 128 AKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVY 187
L ++FV G+ + YG E FKP+M +E E +AL +++ RD SG G +V
Sbjct: 130 GATLEENFVSTGSGSLTAYGVLEDRFKPNMTEEEAIELAVRALRAAMLRDSASGEGYNVV 189
Query: 188 IVT 190
I+T
Sbjct: 190 IIT 192
>sp|B8GG66|PSB_METPE Proteasome subunit beta OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=psmB PE=3 SV=1
Length = 211
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 94/184 (51%), Gaps = 1/184 (0%)
Query: 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQR 66
G+ + +V K+ +A+++R + + +++ ++ DR+ + +G D+Q L +
Sbjct: 8 KGTTTIGIVFKDGIILATEKRATMGSMIASKRAKKVYQVADRIGMTTAGGVGDAQQLARI 67
Query: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSI 126
+ LYQ+R R + ++L+S L + R PY+ Q ++ G+ D P + ++D++
Sbjct: 68 MSVECNLYQIRRGRSISVGASSTLLSNYLNQNRGYPYYVQLLVGGV-DATGPSVYSVDAM 126
Query: 127 GAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHV 186
G D V G+ YG E +K D+ DE E +AL +++ RD SG G HV
Sbjct: 127 GGATRESDIVATGSGSPMAYGVLEDRYKKDLTEDEAIELAIRALRAAMRRDSASGEGIHV 186
Query: 187 YIVT 190
I+T
Sbjct: 187 VIIT 190
>sp|D1Z199|PSB_METPS Proteasome subunit beta OS=Methanocella paludicola (strain DSM
17711 / JCM 13418 / NBRC 101707 / SANAE) GN=psmB PE=3
SV=1
Length = 205
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 5/199 (2%)
Query: 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDS 60
M +Y G+ V ++ N +A++RR + + D Q+I ++ D + + ++G D
Sbjct: 1 MDDKQYKGTTTVGIICNNGLVLATERRATMGNLIASRDAQKIYQLTDNIAMTIAGSVGDG 60
Query: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120
Q L + L KL++LR M + L+S LL+E R ++ Q ++ G+ D+ P +
Sbjct: 61 QRLARMLQAESKLFELRRHGPMSINALSMLLSNLLWEYRI--FYIQVLVGGV-DKSGPKL 117
Query: 121 CTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLS 180
++D G + F G+ YG E +K DM ++ E ++AL S++ RD S
Sbjct: 118 FSLDPAGGRITEVKFSSTGSGSPLAYGVLEDRYKQDMSVEQGVELAAKALESAMKRDSAS 177
Query: 181 GWGGHVYIVTP--TEIKER 197
G G ++TP EI ER
Sbjct: 178 GNGMQFCVITPGKVEIFER 196
>sp|Q58634|PSB_METJA Proteasome subunit beta OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=psmB PE=1 SV=1
Length = 224
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 95/188 (50%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V ++ + +A+D+R + + +++ KI D + + ++G D+Q + + L
Sbjct: 6 GTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLL 65
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
+ KLY++R R++ P A+L+S +L+ R P+ Q +I G + + ++D +G
Sbjct: 66 IAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLG 125
Query: 128 AKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVY 187
K F G+ YG EA + DM +E + AL S+++RD SG G +
Sbjct: 126 GMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLA 185
Query: 188 IVTPTEIK 195
++T +K
Sbjct: 186 VITKDGVK 193
>sp|Q8TW10|PSB_METKA Proteasome subunit beta OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=psmB PE=3 SV=1
Length = 210
Score = 87.4 bits (215), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 95/188 (50%), Gaps = 4/188 (2%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V ++ +A+DRR + ++I +IHD + + +G D+Q + +
Sbjct: 10 GTTTVGILADKGVVLAADRRAVMGNLIAGKQVKKIFRIHDYIGVTTAGSVADAQKIVDLM 69
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYE--KRFGPYFCQPVIAGLSDEDKPFICTMDS 125
+LY+LR R + A+++S +L+ K F PY Q ++ G +D+D P + +D
Sbjct: 70 RAEARLYELRHNRMISARALANMISHVLHSSLKAFRPYLVQLIVGGFNDDD-PALYNLDP 128
Query: 126 IGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGH 185
G+ + +D+ G+ + YG EA ++ M D+ E +A+ S+++RD +G G
Sbjct: 129 SGSI-IEEDYTATGSGSPTAYGVLEAEYEEGMSLDDAIEVAVRAVKSALERDTGTGEGVT 187
Query: 186 VYIVTPTE 193
V +T E
Sbjct: 188 VVTITREE 195
>sp|C7P6N4|PSB_METFA Proteasome subunit beta OS=Methanocaldococcus fervens (strain DSM
4213 / JCM 157852 / AG86) GN=psmB PE=3 SV=1
Length = 224
Score = 87.4 bits (215), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 96/188 (51%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V ++ + +A+D+R + + +++ KI D + + ++G D+Q + + L
Sbjct: 6 GTTTVGLICDDAVILATDKRASMGNLVADKEAKKLYKIDDYIALTIAGSVGDAQAIVRLL 65
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
KLY++R +++ P A+L+S +L+ R+ P+ Q +I G + + ++D +G
Sbjct: 66 TAEAKLYKMRTGKNISPLACATLLSNILHSNRYFPFLTQLIIGGYDLLEGAKLFSLDPLG 125
Query: 128 AKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVY 187
K F G+ YG EA + DM +E + +AL S+++RD SG G +
Sbjct: 126 GMNEEKTFTATGSGSPIAYGVLEAGYDRDMPVEEGIKLALKALKSAMERDTYSGNGISLA 185
Query: 188 IVTPTEIK 195
++T +K
Sbjct: 186 VITKEGVK 193
>sp|D2RGT4|PSB_ARCPA Proteasome subunit beta OS=Archaeoglobus profundus (strain DSM 5631
/ JCM 9629 / NBRC 100127 / Av18) GN=psmB PE=3 SV=1
Length = 215
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 97/185 (52%), Gaps = 1/185 (0%)
Query: 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQ 65
Y G+ V +V K+ +A+++R + + ++I +I DR+ + +G D+Q L +
Sbjct: 10 YKGTTTVGLVCKDGVVLATEKRATMGNFIASRRAKKIYRIADRVAMTTAGAVGDAQFLAR 69
Query: 66 RLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDS 125
+ KLY++R+E + A+L+S +L R+ PYF Q ++ G+ D+ P I ++D
Sbjct: 70 LISVEIKLYEIRKEEKPTVKAIATLLSNILNSVRWFPYFVQLLVGGV-DKRGPSIYSIDL 128
Query: 126 IGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGH 185
+G D V G+ + YG E + P++ D+ E +A+ S++ RD SG G
Sbjct: 129 LGGAIEEIDIVATGSGSPTAYGVLEDRYTPEITVDDGVELAVRAIYSAMRRDSASGDGID 188
Query: 186 VYIVT 190
V +T
Sbjct: 189 VVKIT 193
>sp|B1YDJ0|PSB2_PYRNV Proteasome subunit beta 2 OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=psmB2 PE=3 SV=1
Length = 203
Score = 87.0 bits (214), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 101/182 (55%), Gaps = 2/182 (1%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V + K+ +A+++R+ T++T +++ ++D+L I +G+ D Q L + L
Sbjct: 8 GATAVGIRAKDGVVLAAEKRVSYGFYTLSTAGKKVFIVNDKLAIASAGIIADMQALAKIL 67
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
+ Y+L ++ + A L+S +++ +RF P++ + ++ G+ DE+ P + MD +G
Sbjct: 68 KLNARSYELEVKKKPTVKAMAKLLSVVMFSRRFMPFYAEVLVGGV-DEEGPHLIVMDPLG 126
Query: 128 AKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVY 187
+ + ++ GT + +A ++PDM +E + QA+ ++++RD +SG G +
Sbjct: 127 SL-IEDNYAALGTGAKLAVSLLDASYRPDMTVEEAKKLAVQAVKAAIERDPVSGGGIDLV 185
Query: 188 IV 189
+V
Sbjct: 186 VV 187
>sp|D3RX66|PSB_FERPA Proteasome subunit beta OS=Ferroglobus placidus (strain DSM 10642 /
AEDII12DO) GN=psmB PE=3 SV=1
Length = 210
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 1/191 (0%)
Query: 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQ 65
+ G+ V +V K+ +A+++R + + ++I KI DR+ + +G D+Q L +
Sbjct: 7 FKGTTTVGLVCKDGVVLATEKRATMGNFIASRRAKKIYKITDRIAMTTAGSVGDAQFLAR 66
Query: 66 RLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDS 125
+ LY +R+E + + A+LVS LL R+ PY Q +I G+ D+ I ++D
Sbjct: 67 LIKVETNLYTIRKEEEPTVKAVATLVSNLLNSVRYFPYLVQLLIGGV-DKTGAKIYSIDP 125
Query: 126 IGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGH 185
IG D V G+ YG E ++ D+ DE E +A+ S++ RD SG G
Sbjct: 126 IGGAIEEIDIVATGSGSPMAYGVLEDNYRKDINVDEAVELAIRAIYSAMKRDSASGDGID 185
Query: 186 VYIVTPTEIKE 196
V +T E E
Sbjct: 186 VVKITEKEYVE 196
>sp|D3S8M7|PSB_METSF Proteasome subunit beta OS=Methanocaldococcus sp. (strain FS406-22)
GN=psmB PE=3 SV=1
Length = 224
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 99/201 (49%), Gaps = 7/201 (3%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V ++ + +A+D+R + + +++ KI D + + ++G D+Q + + L
Sbjct: 6 GTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLL 65
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
KLY++R R++ P A+L+S +L+ R P+ Q +I G + + ++D +G
Sbjct: 66 TAEAKLYKMRTGRNIPPLACATLLSNILHSSRVFPFLTQIIIGGYDLLEGAKLFSLDPLG 125
Query: 128 AKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVY 187
K F G+ YG EA + +M +E + AL S+++RD SG G +
Sbjct: 126 GMNEEKTFTATGSGSPIAYGVLEAGYDREMSVEEGIKLAINALKSAMERDTFSGNGISLA 185
Query: 188 IVTPTEIK-------ERILKG 201
++T +K E+IL G
Sbjct: 186 VITKEGVKIFEDEEIEKILDG 206
>sp|A9A4A1|PSB1_NITMS Proteasome subunit beta 1 OS=Nitrosopumilus maritimus (strain SCM1)
GN=psmB1 PE=3 SV=1
Length = 198
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 3/183 (1%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V + AS++R+ ++ ++ I ++ +GL D Q L ++
Sbjct: 7 GATAVGITFDGGVVFASEKRIAFGNFLVSKTTKKTFPITPKVGATCAGLVADMQILSLQI 66
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
K+ ++ +RD+ P T A ++S ++YE+R+ P Q ++ G+ DKP + T+D +G
Sbjct: 67 AALAKIRKMELKRDVPPNTVAKMMSNMMYERRYFPLLTQVIVGGVV--DKPIMYTLDPLG 124
Query: 128 AKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVY 187
+ L ++ GT E G + FKP+M DE + +A+ ++ RD SG G V
Sbjct: 125 S-VLPDEYAAVGTGAEMALGVLDPQFKPNMTKDEAIDLAKRAVRAASLRDSASGDGVDVL 183
Query: 188 IVT 190
++T
Sbjct: 184 VIT 186
>sp|P20618|PSB1_HUMAN Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2
Length = 241
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 26/216 (12%)
Query: 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQ 65
+NG ++A+ G++ +ASD RL D + K+ D+ IG SG D TL +
Sbjct: 35 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 66 RLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDS 125
+ R K+Y+ + M A+++S +LY +RF PY+ +I GL +E K + + D
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDP 154
Query: 126 IGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP-----------------DELFETVSQ 168
+G+ + +D AG G+ AM +P ++ D V
Sbjct: 155 VGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKD 205
Query: 169 ALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 204
+S+ +RD +G + IVT I+E + R D
Sbjct: 206 VFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 241
>sp|O09061|PSB1_MOUSE Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1
Length = 240
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 26/216 (12%)
Query: 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQ 65
+NG ++A+ G++ +ASD RL D + K+ D+ IG SG D TL +
Sbjct: 34 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 93
Query: 66 RLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDS 125
+ R K+Y+ + M A+++S +LY +RF PY+ +I GL +E K + + D
Sbjct: 94 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDP 153
Query: 126 IGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP-----------------DELFETVSQ 168
+G+ + +D AG G+ AM +P ++ D V
Sbjct: 154 VGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKD 204
Query: 169 ALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 204
+S+ +RD +G + IVT I+E + R D
Sbjct: 205 VFISAAERDVYTGDALRICIVTKEGIREETVPLRKD 240
>sp|A1RX71|PSB2_THEPD Proteasome subunit beta 2 OS=Thermofilum pendens (strain Hrk 5)
GN=psmB2 PE=3 SV=1
Length = 204
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 96/180 (53%), Gaps = 2/180 (1%)
Query: 18 NCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLR 77
+ +A+++R+ L ++ +++ +I D++ + +GL D QTL + + +LY+L
Sbjct: 15 DGVVLAAEKRVSYGLYLMSKSGKKVYRILDKMGMASAGLMADMQTLARIVEAEMRLYELD 74
Query: 78 EERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVV 137
K T A L+S +LYE+R PY+ + V+ GL DE+ + ++D IGA + D+V
Sbjct: 75 SNISPKVWTVAKLLSYILYERRLFPYYAEIVVGGL-DEEGSHLYSLDPIGAI-IEDDYVA 132
Query: 138 AGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKER 197
G+ + E+ +K DM DE +++ +++ RD SG G V ++ + E+
Sbjct: 133 LGSGTQLAISIVESNYKKDMSLDEALSLALKSVYAAMKRDAASGDGVDVLVIGKSGTLEK 192
>sp|P18421|PSB1_RAT Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1
SV=3
Length = 240
Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 26/216 (12%)
Query: 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQ 65
+NG ++A+ G++ +ASD RL D + K+ D+ IG SG D TL +
Sbjct: 34 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 93
Query: 66 RLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDS 125
+ R K+Y+ + M A+++S +LY +RF PY+ +I GL +E K + + D
Sbjct: 94 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAVYSFDP 153
Query: 126 IGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP-----------------DELFETVSQ 168
+G+ + +D AG G+ AM +P ++ D V
Sbjct: 154 VGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKD 204
Query: 169 ALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 204
+S+ +RD +G + IVT I+E + R D
Sbjct: 205 VFISAAERDVYTGDALRICIVTKEGIREETVPLRKD 240
>sp|B1L6X8|PSB2_KORCO Proteasome subunit beta 2 OS=Korarchaeum cryptofilum (strain OPF8)
GN=psmB2 PE=3 SV=1
Length = 198
Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 3/170 (1%)
Query: 22 IASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERD 81
+A+DRR+ ++ +++ I++R+ + +GL D Q L L + +Y+L E+
Sbjct: 17 LAADRRVSYNGFILSKSARKVFLINERVGVSTAGLPGDFQELVDVLKYNITMYELENEKA 76
Query: 82 MKPETFASLVSALLYEKRF-GPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGT 140
P A L+S LLY+ RF G Y+ + V+ G+ D P I +D G + ++F G+
Sbjct: 77 ATPTNVAKLLSILLYQGRFSGIYYAELVVGGI-DNSGPKIFVLDPAGGL-MEENFSAVGS 134
Query: 141 AGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVT 190
+ G E FK M E E +A+ ++ RD LSG G + I+T
Sbjct: 135 GAQIATGILERFFKEGMSEKEAVELAERAMREAISRDALSGDGIDLLIIT 184
>sp|Q9IB84|PSB1A_CARAU Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A
PE=2 SV=1
Length = 238
Score = 83.6 bits (205), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 26/216 (12%)
Query: 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQ 65
+NG ++A+ G++ +ASD RL + D + K+ D IG SG D TL +
Sbjct: 32 FNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTK 91
Query: 66 RLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDS 125
+ R K+Y+ + M A+++S +LY +RF PY+ +I GL +E + + + D
Sbjct: 92 IIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDP 151
Query: 126 IGAKELAKDFVVAGTAGESLYGACEAMFKP---------DME--------PDELFETVSQ 168
+G+ + +D AG G+ AM +P +ME ++ + V
Sbjct: 152 VGSYQ--RDTYKAG-------GSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKD 202
Query: 169 ALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 204
+S+ +RD +G + I+T I+E I+ R D
Sbjct: 203 VFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 238
>sp|Q9IB83|PSB1B_CARAU Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B
PE=2 SV=1
Length = 237
Score = 83.6 bits (205), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 26/216 (12%)
Query: 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQ 65
+NG ++A+ G++ +ASD RL + D + K+ D IG SG D TL +
Sbjct: 31 FNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTK 90
Query: 66 RLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDS 125
+ R K+Y+ + M A+++S +LY +RF PY+ +I GL +E + + + D
Sbjct: 91 IIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDP 150
Query: 126 IGAKELAKDFVVAGTAGESLYGACEAMFKP---------DME--------PDELFETVSQ 168
+G+ + +D AG G+ AM +P +ME ++ + V
Sbjct: 151 VGSYQ--RDTYKAG-------GSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKD 201
Query: 169 ALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 204
+S+ +RD +G + I+T I+E I+ R D
Sbjct: 202 VFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 237
>sp|P42742|PSB1_ARATH Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1
SV=2
Length = 223
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%)
Query: 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQR 66
NG VA+ G + IA+D R+ ++ D+ +I K+ DR + SG D + L +
Sbjct: 14 NGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKV 73
Query: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSI 126
L RH +YQ + + M A L+S LY KRF PY+ V+ GL +E K + T D++
Sbjct: 74 LKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKGCVFTYDAV 133
Query: 127 GAKE 130
G+ E
Sbjct: 134 GSYE 137
>sp|B9LTS6|PSB_HALLT Proteasome subunit beta OS=Halorubrum lacusprofundi (strain ATCC
49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=psmB PE=3 SV=1
Length = 243
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQR 66
G+ V + + +A+D R + + D Q++ ++H R + ++G + +Q L
Sbjct: 48 TGTTTVGIKTADGVVMATDMRASLGGMVSSKDVQKVEEVHPRGALTIAGSVSAAQNLIST 107
Query: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSI 126
L LY+ R +DM E ++L LL F Y QP++ G+ DE I ++D++
Sbjct: 108 LKAETSLYETRRGKDMSMEALSTLTGNLLRSGAF--YIVQPILGGVDDE-GSHIYSIDAL 164
Query: 127 GAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHV 186
G +++ V G+ + G E + D+ DE ++A+ S+V+RD SG G +V
Sbjct: 165 GGT-TEEEYTVTGSGSQYALGVLEQEYDDDVTVDEAKTMAAKAIQSAVERDLASGNGINV 223
Query: 187 YIVT 190
+VT
Sbjct: 224 AVVT 227
>sp|A1RSJ8|PSB1_PYRIL Proteasome subunit beta 1 OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=psmB1 PE=3 SV=1
Length = 203
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 103/196 (52%), Gaps = 2/196 (1%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V + K+ +A+++R+ T+++ +++ I+D+L I +G+ D QTL + L
Sbjct: 8 GATAVGIKAKDGVVLAAEKRVSYGFYTLSSAGKKVFIINDKLAIASAGIIADMQTLARIL 67
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
Y+L + A L+S +++ +R P++ + ++ G+ DE+ P + MD +G
Sbjct: 68 KLNVMSYELEVRKKPTVRAMAKLLSIIMFSRRLLPFYAEVLVGGV-DEEGPHLIVMDPLG 126
Query: 128 AKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVY 187
+ + ++ GT + +A ++PD+ E + QA+ ++++RD +SG G +
Sbjct: 127 SL-IEDNYAALGTGAKLAVSLLDATYRPDISLQEAKKLAVQAIKAAIERDPVSGGGIDLA 185
Query: 188 IVTPTEIKERILKGRM 203
+V +E +K +M
Sbjct: 186 VVDNNGAREEEVKIQM 201
>sp|Q2TBX6|PSB1_BOVIN Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1
Length = 241
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 26/216 (12%)
Query: 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQ 65
+NG ++A+ G++ +ASD RL D + K+ D+ IG SG D TL +
Sbjct: 35 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 66 RLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDS 125
+ R K+Y+ + M A+++S +LY +RF PY+ +I GL +E K + + D
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDP 154
Query: 126 IGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP-----------------DELFETVSQ 168
+G+ + +D AG G+ AM +P ++ D V
Sbjct: 155 VGSYQ--RDSFKAG-------GSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKD 205
Query: 169 ALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 204
+S+ +RD +G V IVT I+ + R D
Sbjct: 206 VFISAAERDVYTGDALKVCIVTKEGIRGETVPLRKD 241
>sp|Q74MP5|PSB_NANEQ Proteasome subunit beta OS=Nanoarchaeum equitans (strain Kin4-M)
GN=psmB PE=3 SV=1
Length = 196
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 98/199 (49%), Gaps = 10/199 (5%)
Query: 9 SALVAMVGKNCFAIASDRRLGVQLQTIATD--FQRISKIHDRLFIGLSGLATDSQTLYQR 66
+ ++ + ++ +ASD++ + I D Q+I I D + + SG D Q + +
Sbjct: 2 TTIIGIKARDGVVLASDKQ--ASMGNIVEDKRAQKIIPITDYILLAGSGTVADLQHIAKI 59
Query: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPV---IAGLSDEDKPFICTM 123
L KL +L R M A+L+S LLY+ RF + P+ IAG + + I ++
Sbjct: 60 LKTELKLRELYSRRTMNVIEAANLLSHLLYQNRF---YLNPLGLLIAGPINSKEFGIYSL 116
Query: 124 DSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWG 183
D IGA KD+ G+ G G EA + PD+ + + +AL SS+ RD SG+G
Sbjct: 117 DGIGAISEIKDYFAEGSGGVIALGTLEAEYNPDITVRDAIKLAEKALKSSIARDVFSGYG 176
Query: 184 GHVYIVTPTEIKERILKGR 202
+Y +T +++ L+ +
Sbjct: 177 IEIYTITKKGVEKLFLEAQ 195
>sp|A6USJ3|PSB_METVS Proteasome subunit beta OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=psmB PE=3 SV=1
Length = 219
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 89/176 (50%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V ++ ++ +A+D+R + + +++ KI D + + ++G D+Q+L + L
Sbjct: 14 GTTTVGLICEDGVVLATDKRATMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQSLIRLL 73
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
K+Y++R +M P + +L S +L+ R P Q +I G + P + ++D +G
Sbjct: 74 SAEAKIYKMRTGNNMTPLSCTTLTSNVLHGNRHYPLLTQLIIGGYDLINGPKLFSLDPVG 133
Query: 128 AKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWG 183
F G+ + YG EA +K ++ ++ +AL+S++ RD SG G
Sbjct: 134 GINEESSFTATGSGSPTAYGVLEAEYKSEINIEKGLLIAVKALISAMQRDAYSGNG 189
>sp|O64464|PSB1_ORYSJ Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica
GN=PBF1 PE=2 SV=1
Length = 221
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 11/173 (6%)
Query: 3 ITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQT 62
+ E NG VA+ G + +A+D RL V + D +I ++ D+ + SG D +
Sbjct: 8 VYENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKA 67
Query: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICT 122
L++ L R LYQ + + M A L+S LY KRF PY+ V+ GL E K + T
Sbjct: 68 LHKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFT 127
Query: 123 MDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVD 175
D++G+ E G S G A+ P + D ++ S LL + D
Sbjct: 128 YDAVGSYE---------RTGYSAQGTGSALIMPVL--DNQLKSPSPLLLPARD 169
>sp|O82531|PSB1_PETHY Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1
Length = 223
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%)
Query: 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQR 66
NG VA+ G + IA+D R+ + D+ +I K+ D+ + SG D + L +
Sbjct: 14 NGGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKIIKLADKCVMASSGFQADVRALQKV 73
Query: 67 LVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSI 126
L RH +YQ + + M L+S LY KRF PY+ V+ GL E K + T D++
Sbjct: 74 LASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCVFTYDAV 133
Query: 127 GAKE 130
G+ E
Sbjct: 134 GSYE 137
>sp|A8AB58|PSB2_IGNH4 Proteasome subunit beta 2 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=psmB2 PE=3 SV=1
Length = 212
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 3/190 (1%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V + + +A+D+R + ++I KI D + + +GL D+Q L L
Sbjct: 13 GTTTVGIRSEKAVVLAADKRATAGNFIVHKRVEKIVKISDYMAMTTAGLVADAQVLADVL 72
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
K Y+L ++ M + A+ +S +L+ RF PY Q ++ G + P + ++D G
Sbjct: 73 RMEVKNYELFHKKRMSVKAAATFLSNVLHSARFYPYIVQLLVGGF--DTAPRLYSLDWFG 130
Query: 128 AKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVY 187
++F+V G+ G EA + P+M+ +EL +A+ ++ RD SG G V
Sbjct: 131 TVA-EEEFLVTGSGSPMAVGVIEAEYNPNMDLEELVNLAVRAVFAATRRDTASGEGIDVA 189
Query: 188 IVTPTEIKER 197
++ I R
Sbjct: 190 VIDRNGITMR 199
>sp|D4GYZ1|PSB_HALVD Proteasome subunit beta OS=Haloferax volcanii (strain ATCC 29605 /
DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM
B-1768 / DS2) GN=psmB PE=1 SV=1
Length = 243
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 4/183 (2%)
Query: 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRL 67
G+ V + + +A+D R + + D Q++ +IH + ++G + +Q+L L
Sbjct: 49 GTTTVGIKTEEGVVLATDMRASMGYMVSSKDVQKVEEIHPTGALTIAGSVSAAQSLISSL 108
Query: 68 VFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIG 127
+LY+ R DM + ++LV L F Y QP++ G+ DE P I ++D G
Sbjct: 109 RAEVRLYEARRGEDMSMQALSTLVGNFLRSGGF--YVVQPILGGV-DETGPHIYSIDPAG 165
Query: 128 AKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVY 187
+ L +++ V G+ + G E F+ + +E ++A+ S+V+RD SG G ++
Sbjct: 166 SI-LEEEYTVTGSGSQYALGVLEQEFEDGLSIEEAKGVATKAIRSAVERDLASGNGINIA 224
Query: 188 IVT 190
+VT
Sbjct: 225 VVT 227
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,559,877
Number of Sequences: 539616
Number of extensions: 2812852
Number of successful extensions: 6788
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 6487
Number of HSP's gapped (non-prelim): 238
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)