Query 028737
Match_columns 204
No_of_seqs 120 out of 1081
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 16:11:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03757 proteasome_beta_type_1 100.0 1.4E-53 3E-58 341.1 24.9 203 1-204 1-212 (212)
2 cd03759 proteasome_beta_type_3 100.0 9.8E-52 2.1E-56 326.5 25.1 194 6-199 1-194 (195)
3 cd03761 proteasome_beta_type_5 100.0 2.7E-49 5.8E-54 311.0 24.6 186 9-196 1-186 (188)
4 cd03758 proteasome_beta_type_2 100.0 2.6E-49 5.6E-54 312.2 24.4 190 9-199 2-193 (193)
5 cd03760 proteasome_beta_type_4 100.0 3.2E-49 7E-54 312.6 24.1 190 7-197 1-195 (197)
6 TIGR03634 arc_protsome_B prote 100.0 1.8E-48 3.8E-53 305.5 24.0 185 8-194 1-185 (185)
7 COG0638 PRE1 20S proteasome, a 100.0 2.1E-48 4.5E-53 315.3 24.0 189 5-195 27-218 (236)
8 cd03762 proteasome_beta_type_6 100.0 8.2E-48 1.8E-52 302.5 24.8 187 9-197 1-187 (188)
9 cd03764 proteasome_beta_archea 100.0 1.3E-47 2.7E-52 301.4 24.3 186 9-196 1-186 (188)
10 cd01912 proteasome_beta protea 100.0 6.4E-47 1.4E-51 297.4 24.7 188 9-197 1-188 (189)
11 cd03763 proteasome_beta_type_7 100.0 1E-46 2.2E-51 296.5 24.6 186 9-197 1-186 (189)
12 PTZ00488 Proteasome subunit be 100.0 9.7E-47 2.1E-51 307.1 24.9 191 3-195 34-224 (247)
13 TIGR03690 20S_bact_beta protea 100.0 1.2E-45 2.6E-50 296.5 24.3 189 7-196 1-201 (219)
14 cd03765 proteasome_beta_bacter 100.0 2.4E-45 5.1E-50 296.3 24.0 190 9-200 1-209 (236)
15 cd03750 proteasome_alpha_type_ 100.0 1.5E-45 3.3E-50 297.5 22.5 188 4-195 23-215 (227)
16 KOG0179 20S proteasome, regula 100.0 1.1E-45 2.3E-50 283.0 20.3 203 1-204 22-235 (235)
17 cd03752 proteasome_alpha_type_ 100.0 2.9E-45 6.4E-50 293.3 21.9 185 4-189 25-213 (213)
18 TIGR03633 arc_protsome_A prote 100.0 7.1E-45 1.5E-49 293.1 23.0 194 4-201 25-222 (224)
19 PTZ00246 proteasome subunit al 100.0 5.8E-45 1.3E-49 298.5 22.8 189 4-193 27-219 (253)
20 PRK03996 proteasome subunit al 100.0 1.5E-44 3.2E-49 294.2 22.6 194 4-201 32-229 (241)
21 cd03755 proteasome_alpha_type_ 100.0 1.4E-44 3.1E-49 288.1 21.5 181 4-189 23-207 (207)
22 PF00227 Proteasome: Proteasom 100.0 3.2E-44 7E-49 281.9 22.2 185 5-189 1-190 (190)
23 cd03751 proteasome_alpha_type_ 100.0 3.1E-44 6.6E-49 287.0 21.2 183 4-189 26-212 (212)
24 cd03749 proteasome_alpha_type_ 100.0 7.7E-44 1.7E-48 284.6 22.0 182 4-190 23-211 (211)
25 cd03756 proteasome_alpha_arche 100.0 1.1E-43 2.5E-48 283.7 22.0 183 4-190 24-210 (211)
26 cd03754 proteasome_alpha_type_ 100.0 8.8E-44 1.9E-48 285.0 21.4 182 5-189 26-215 (215)
27 cd01911 proteasome_alpha prote 100.0 1.4E-43 3.1E-48 282.7 21.4 183 4-189 23-209 (209)
28 cd01906 proteasome_protease_Hs 100.0 2.8E-43 6.1E-48 274.8 22.5 180 9-189 1-182 (182)
29 cd03753 proteasome_alpha_type_ 100.0 8.6E-43 1.9E-47 279.0 21.6 182 4-189 23-213 (213)
30 KOG0176 20S proteasome, regula 100.0 3E-43 6.4E-48 267.4 17.1 187 5-195 31-226 (241)
31 KOG0180 20S proteasome, regula 100.0 9.7E-43 2.1E-47 259.4 18.1 204 1-204 1-204 (204)
32 TIGR03691 20S_bact_alpha prote 100.0 5.9E-42 1.3E-46 276.0 22.2 182 4-193 23-211 (228)
33 KOG0174 20S proteasome, regula 100.0 1.2E-40 2.5E-45 252.5 17.4 197 4-202 15-211 (224)
34 KOG0178 20S proteasome, regula 100.0 1.4E-40 3E-45 255.2 16.5 191 5-196 28-223 (249)
35 KOG0177 20S proteasome, regula 100.0 1.7E-38 3.6E-43 240.0 17.3 189 9-198 2-192 (200)
36 KOG0183 20S proteasome, regula 100.0 5.3E-39 1.2E-43 246.9 14.2 185 4-193 26-216 (249)
37 KOG0173 20S proteasome, regula 100.0 1.7E-38 3.8E-43 249.4 17.2 192 2-196 31-222 (271)
38 KOG0184 20S proteasome, regula 100.0 1E-37 2.2E-42 241.0 15.7 186 3-191 29-218 (254)
39 KOG0181 20S proteasome, regula 100.0 7.6E-38 1.6E-42 237.4 13.7 189 4-196 28-220 (233)
40 KOG0175 20S proteasome, regula 100.0 5.4E-37 1.2E-41 241.5 17.1 192 4-197 67-258 (285)
41 KOG0185 20S proteasome, regula 100.0 1.1E-35 2.5E-40 231.3 15.8 191 6-197 39-235 (256)
42 KOG0863 20S proteasome, regula 100.0 1.8E-35 3.9E-40 229.7 15.9 185 5-194 29-220 (264)
43 PRK05456 ATP-dependent proteas 100.0 2.4E-34 5.1E-39 222.0 19.4 167 8-188 1-171 (172)
44 KOG0182 20S proteasome, regula 100.0 1.9E-34 4.2E-39 221.5 18.6 191 7-200 35-231 (246)
45 cd01913 protease_HslV Protease 100.0 3.3E-34 7.2E-39 219.8 19.5 166 9-188 1-170 (171)
46 TIGR03692 ATP_dep_HslV ATP-dep 100.0 2.4E-33 5.3E-38 215.0 19.1 166 9-188 1-170 (171)
47 cd01901 Ntn_hydrolase The Ntn 100.0 1.9E-30 4.2E-35 197.0 20.5 162 9-171 1-163 (164)
48 COG5405 HslV ATP-dependent pro 99.8 4.1E-18 8.8E-23 126.6 12.7 172 6-190 2-176 (178)
49 COG3484 Predicted proteasome-t 99.5 1.6E-12 3.5E-17 100.3 12.8 188 9-198 2-207 (255)
50 PF09894 DUF2121: Uncharacteri 97.4 0.02 4.4E-07 44.6 15.4 152 9-192 2-180 (194)
51 COG4079 Uncharacterized protei 95.5 0.41 8.9E-06 38.8 11.5 153 9-192 2-181 (293)
52 KOG3361 Iron binding protein i 90.9 0.26 5.6E-06 36.2 2.9 43 121-164 71-113 (157)
53 PF13983 YsaB: YsaB-like lipop 62.4 30 0.00065 22.5 4.9 60 71-130 5-72 (77)
54 COG3193 GlcG Uncharacterized p 59.1 48 0.001 24.8 6.2 41 154-198 5-45 (141)
55 PRK09732 hypothetical protein; 58.7 48 0.001 24.5 6.2 41 155-199 5-45 (134)
56 PF03928 DUF336: Domain of unk 54.4 27 0.00059 25.4 4.4 40 156-199 2-41 (132)
57 COG4245 TerY Uncharacterized p 53.2 27 0.0006 27.5 4.3 41 161-201 22-62 (207)
58 COG3140 Uncharacterized protei 43.5 30 0.00065 21.4 2.5 36 143-178 14-49 (60)
59 TIGR02261 benz_CoA_red_D benzo 36.2 58 0.0013 27.0 4.0 53 109-169 104-158 (262)
60 PF07499 RuvA_C: RuvA, C-termi 36.1 14 0.00031 21.8 0.3 32 137-168 12-44 (47)
61 PF04539 Sigma70_r3: Sigma-70 35.5 66 0.0014 20.6 3.6 29 65-93 4-32 (78)
62 COG1754 Uncharacterized C-term 34.8 42 0.00092 28.1 3.0 58 109-170 77-137 (298)
63 PF08269 Cache_2: Cache domain 34.7 89 0.0019 20.9 4.3 41 155-201 33-73 (95)
64 COG4302 EutC Ethanolamine ammo 33.8 2.2E+02 0.0048 23.5 6.8 116 50-178 163-287 (294)
65 PF01242 PTPS: 6-pyruvoyl tetr 31.5 86 0.0019 22.3 3.9 44 54-97 43-96 (123)
66 PF10632 He_PIG_assoc: He_PIG 31.0 70 0.0015 17.0 2.4 22 106-128 5-26 (29)
67 COG4537 ComGC Competence prote 30.8 98 0.0021 21.8 3.8 28 60-87 49-77 (107)
68 TIGR03192 benz_CoA_bzdQ benzoy 29.8 99 0.0021 26.1 4.5 51 107-165 130-182 (293)
69 PF01458 UPF0051: Uncharacteri 27.9 1.1E+02 0.0023 24.5 4.2 48 117-170 182-229 (229)
70 cd04513 Glycosylasparaginase G 27.4 1.9E+02 0.004 24.0 5.6 58 135-195 187-248 (263)
71 TIGR02259 benz_CoA_red_A benzo 27.3 1E+02 0.0022 27.4 4.2 52 109-168 274-327 (432)
72 COG4728 Uncharacterized protei 26.9 47 0.001 23.4 1.7 38 42-79 10-50 (124)
73 PF00538 Linker_histone: linke 26.4 1.1E+02 0.0023 19.9 3.4 40 139-178 21-60 (77)
74 PRK14065 exodeoxyribonuclease 26.0 1.7E+02 0.0036 19.9 4.1 33 141-173 30-62 (86)
75 COG0822 IscU NifU homolog invo 25.8 1.8E+02 0.0039 21.9 4.9 55 118-174 43-98 (150)
76 PF01592 NifU_N: NifU-like N t 25.0 1.3E+02 0.0028 21.6 3.9 54 121-175 42-96 (126)
77 PF04485 NblA: Phycobilisome d 23.5 1.2E+02 0.0026 18.6 2.9 23 155-177 20-42 (53)
78 cd04512 Ntn_Asparaginase_2_lik 22.0 2.7E+02 0.0058 22.9 5.5 54 135-194 176-233 (248)
79 PF03701 UPF0181: Uncharacteri 21.4 1.4E+02 0.003 18.1 2.8 33 144-176 15-47 (51)
80 cd04702 ASRGL1_like ASRGL1_lik 21.1 2.6E+02 0.0057 23.1 5.3 54 135-194 179-236 (261)
81 PRK02487 hypothetical protein; 20.9 3.7E+02 0.0081 20.2 7.1 41 153-198 19-59 (163)
82 PRK11325 scaffold protein; Pro 20.6 1.8E+02 0.004 20.9 4.0 55 118-173 41-96 (127)
83 PF11211 DUF2997: Protein of u 20.2 1.3E+02 0.0027 18.0 2.5 31 121-152 3-33 (48)
84 TIGR00039 6PTHBS 6-pyruvoyl te 20.1 1.3E+02 0.0028 21.6 3.0 43 54-96 45-95 (124)
No 1
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-53 Score=341.11 Aligned_cols=203 Identities=28% Similarity=0.463 Sum_probs=196.4
Q ss_pred CCcccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCC
Q 028737 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER 80 (204)
Q Consensus 1 ~~~~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 80 (204)
.+||.++|+|+|||+++||||||+|++.++|.++..++.+|||+|+++++|++||..+|++.+.++++.+++.|++++++
T Consensus 1 ~~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~ 80 (212)
T cd03757 1 FSPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNK 80 (212)
T ss_pred CCCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCC
Confidence 48999999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCC------
Q 028737 81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFK------ 154 (204)
Q Consensus 81 ~~~~~~la~~l~~~~~~~r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~------ 154 (204)
+++++.++++++.++|++|.+||+|++|+||||++++|+||++||+|++.+++ ++|+|+|+++++++||+.|+
T Consensus 81 ~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~~ 159 (212)
T cd03757 81 EMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERET-YSAGGSASSLIQPLLDNQVGRKNQNN 159 (212)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecC-EEEEeecHHHHHHHHHHHHHhhccCc
Confidence 99999999999999999888899999999999987789999999999999986 99999999999999999975
Q ss_pred ---CCCCHHHHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEEEEEeccCCC
Q 028737 155 ---PDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 204 (204)
Q Consensus 155 ---~~~s~~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~~~~~~~~~ 204 (204)
++||.+||++++.+||+.+.+||+.++++++|++|+++|++++.+|+|+|
T Consensus 160 ~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~~~~~~~~ 212 (212)
T cd03757 160 VERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEETFPLRKD 212 (212)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEEeeccCCC
Confidence 89999999999999999999999999999999999999999999999998
No 2
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.8e-52 Score=326.54 Aligned_cols=194 Identities=67% Similarity=1.140 Sum_probs=185.8
Q ss_pred ccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 028737 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (204)
Q Consensus 6 ~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (204)
++|+|+|||+++||||||+|++.+.+..+.+++.+|||+|++|+++++||+.+|++.+.+++|.+++.|+++++++++++
T Consensus 1 ~~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~ 80 (195)
T cd03759 1 YNGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPK 80 (195)
T ss_pred CCCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 46999999999999999999999988777777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHHHHHH
Q 028737 86 TFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFET 165 (204)
Q Consensus 86 ~la~~l~~~~~~~r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 165 (204)
.+|++|++++|++|.+||+|++|+||||++++|+||++||+|++..+.+++|+|+|++.++++||+.|+++||.+||+++
T Consensus 81 ~la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 160 (195)
T cd03759 81 TFSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFET 160 (195)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHH
Confidence 99999999999988899999999999998778999999999998777569999999999999999999999999999999
Q ss_pred HHHHHHHhHhcccccCCcEEEEEEcCCcEEEEEe
Q 028737 166 VSQALLSSVDRDCLSGWGGHVYIVTPTEIKERIL 199 (204)
Q Consensus 166 ~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~~~~ 199 (204)
+.+||+.+.+||+.++++++|++|+++|++++.|
T Consensus 161 ~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~ 194 (195)
T cd03759 161 ISQALLSAVDRDALSGWGAVVYIITKDKVTTRTL 194 (195)
T ss_pred HHHHHHHHHhhCcccCCceEEEEEcCCcEEEEec
Confidence 9999999999999999999999999999999887
No 3
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.7e-49 Score=310.96 Aligned_cols=186 Identities=20% Similarity=0.297 Sum_probs=180.4
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 028737 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (204)
Q Consensus 9 ~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (204)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|++|+++++||+.+|++.+.+++|.+++.|+..++++|+++.+|
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999899889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHHHHHHHHH
Q 028737 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQ 168 (204)
Q Consensus 89 ~~l~~~~~~~r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~ 168 (204)
+++++++|.+|..||+|++|+||||+ .||+||++||+|++.+++ ++|+|+|+++++++||+.|+++||.+||++++.+
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~ 158 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGD-LFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLARR 158 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcC-eEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 99999999998789999999999996 489999999999999996 9999999999999999999999999999999999
Q ss_pred HHHHhHhcccccCCcEEEEEEcCCcEEE
Q 028737 169 ALLSSVDRDCLSGWGGHVYIVTPTEIKE 196 (204)
Q Consensus 169 ~l~~~~~~d~~~~~~v~i~~i~k~g~~~ 196 (204)
||+.+.+||..++++++|++|+++|+++
T Consensus 159 ~l~~~~~rd~~sg~~~~v~ii~~~g~~~ 186 (188)
T cd03761 159 AIYHATHRDAYSGGNVNLYHVREDGWRK 186 (188)
T ss_pred HHHHHHHhcccCCCCeEEEEEcCCceEE
Confidence 9999999999999999999999999965
No 4
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.6e-49 Score=312.24 Aligned_cols=190 Identities=21% Similarity=0.312 Sum_probs=181.1
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 028737 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (204)
Q Consensus 9 ~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (204)
+|+|||+++||||||+|+|.+.|.++.+++++|||+|++++++++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-c-cCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHHHHHHH
Q 028737 89 SLVSALLYEK-R-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETV 166 (204)
Q Consensus 89 ~~l~~~~~~~-r-~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~ 166 (204)
+++++++|.+ | .|||+|++|++|||++++|+||++||+|++.+++ ++|+|+|+++++++||+.|+++||.+||++++
T Consensus 82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~ 160 (193)
T cd03758 82 NFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVP-YAAHGYGAYFCLSILDRYYKPDMTVEEALELM 160 (193)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECC-eeEEeecHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 9999998653 3 3699999999999976789999999999999996 99999999999999999999999999999999
Q ss_pred HHHHHHhHhcccccCCcEEEEEEcCCcEEEEEe
Q 028737 167 SQALLSSVDRDCLSGWGGHVYIVTPTEIKERIL 199 (204)
Q Consensus 167 ~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~~~~ 199 (204)
.+|++.+.+||+.++++++|++|+++|+++.++
T Consensus 161 ~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~~~ 193 (193)
T cd03758 161 KKCIKELKKRFIINLPNFTVKVVDKDGIRDLEL 193 (193)
T ss_pred HHHHHHHHHhccccCCceEEEEEcCCCeEeCCC
Confidence 999999999999999999999999999987653
No 5
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.2e-49 Score=312.63 Aligned_cols=190 Identities=21% Similarity=0.261 Sum_probs=180.8
Q ss_pred cCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHH-HhhhhcCCCCCHH
Q 028737 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHK-LYQLREERDMKPE 85 (204)
Q Consensus 7 ~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~ 85 (204)
.|+|+|||+++||||||+|+|.+++.++.+++.+|||+|+++++++++|+.+|++.+.+++|.+++ .|.++++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 489999999999999999999998899999999999999999999999999999999999999987 5767889999999
Q ss_pred HHHHHHHHHHHhcc--cCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCC--CCCHHH
Q 028737 86 TFASLVSALLYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP--DMEPDE 161 (204)
Q Consensus 86 ~la~~l~~~~~~~r--~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s~~e 161 (204)
.+|+++++++|+++ +|||+|++|+||||++++|+||++||+|++.+++ ++|+|+|+++++++||+.|++ +||.+|
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~ms~ee 159 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDP-HVATGFGAYLALPLLREAWEKKPDLTEEE 159 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECC-EeEEccHHHHHHHHHHhhcCCCCCCCHHH
Confidence 99999999999876 7899999999999976789999999999999996 999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEEEE
Q 028737 162 LFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKER 197 (204)
Q Consensus 162 a~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~~ 197 (204)
|++++.+||+.+.+||..++++++|++|+++|++.+
T Consensus 160 a~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~ 195 (197)
T cd03760 160 ARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIE 195 (197)
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeC
Confidence 999999999999999999999999999999998643
No 6
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.8e-48 Score=305.50 Aligned_cols=185 Identities=26% Similarity=0.461 Sum_probs=179.8
Q ss_pred CceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 028737 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (204)
Q Consensus 8 g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (204)
|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++++++|..+|++.+.++++.+++.|+..++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHHHHHHHH
Q 028737 88 ASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVS 167 (204)
Q Consensus 88 a~~l~~~~~~~r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~ 167 (204)
+++|++++|.+++|||+|++|+||||++ +|+||.+||+|++.+++ ++|+|+|+++++++||+.|+++||++||++++.
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~~-g~~Ly~~d~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~ 158 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDEE-GPHLYSLDPAGGIIEDD-YTATGSGSPVAYGVLEDEYREDMSVEEAKKLAV 158 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeCC-CCEEEEECCCCCeEECC-EEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 9999999999889999999999999975 79999999999999996 999999999999999999999999999999999
Q ss_pred HHHHHhHhcccccCCcEEEEEEcCCcE
Q 028737 168 QALLSSVDRDCLSGWGGHVYIVTPTEI 194 (204)
Q Consensus 168 ~~l~~~~~~d~~~~~~v~i~~i~k~g~ 194 (204)
+||+.+.+||+.++++++|++++++|+
T Consensus 159 ~~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 159 RAIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred HHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 999999999999999999999999985
No 7
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-48 Score=315.30 Aligned_cols=189 Identities=28% Similarity=0.433 Sum_probs=180.5
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCH
Q 028737 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (204)
Q Consensus 5 ~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (204)
...|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+|||+|++||+.+|++.+.++++.+++.|++.++++|++
T Consensus 27 ~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v 106 (236)
T COG0638 27 KRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISV 106 (236)
T ss_pred HcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc--CccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHHH
Q 028737 85 ETFASLVSALLYEKRF--GPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDEL 162 (204)
Q Consensus 85 ~~la~~l~~~~~~~r~--~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 162 (204)
+.+++++++++|.++. |||++++|+||+|+ ++|+||++||+|++.+++ +.|+|+|++.++++||+.|+++|+.+||
T Consensus 107 ~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~-~~a~Gsgs~~a~~~Le~~y~~~m~~eea 184 (236)
T COG0638 107 EALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYK-ATAIGSGSQFAYGFLEKEYREDLSLEEA 184 (236)
T ss_pred HHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeEEEECCCCceeecC-EEEEcCCcHHHHHHHHhhccCCCCHHHH
Confidence 9999999999999886 99999999999998 789999999999999986 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhcccccCCcEEEEEEcCC-cEE
Q 028737 163 FETVSQALLSSVDRDCLSGWGGHVYIVTPT-EIK 195 (204)
Q Consensus 163 ~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~-g~~ 195 (204)
++++.+||+.+++||..++++++|++++++ |.+
T Consensus 185 i~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~ 218 (236)
T COG0638 185 IELAVKALRAAIERDAASGGGIEVAVITKDEGFR 218 (236)
T ss_pred HHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeE
Confidence 999999999999999988889999999994 544
No 8
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.2e-48 Score=302.50 Aligned_cols=187 Identities=20% Similarity=0.295 Sum_probs=179.7
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 028737 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (204)
Q Consensus 9 ~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (204)
+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++++++|+.+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 68999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHHHHHHHHH
Q 028737 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQ 168 (204)
Q Consensus 89 ~~l~~~~~~~r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~ 168 (204)
+++++++|.+| +||+|++|+||||++.+|+||.+||+|++.+++ ++++|+|+++++++||+.|+++||.+||++++++
T Consensus 81 ~~l~~~~~~~~-~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~-~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~ 158 (188)
T cd03762 81 SLFKNLCYNYK-EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQP-FAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKN 158 (188)
T ss_pred HHHHHHHHhcc-ccceeeEEEEEEcCCCCcEEEEECCCCCEEecC-EEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 99999998875 689999999999976689999999999999985 9999999999999999999999999999999999
Q ss_pred HHHHhHhcccccCCcEEEEEEcCCcEEEE
Q 028737 169 ALLSSVDRDCLSGWGGHVYIVTPTEIKER 197 (204)
Q Consensus 169 ~l~~~~~~d~~~~~~v~i~~i~k~g~~~~ 197 (204)
||+.+.+||+.++++++|++|+++|++++
T Consensus 159 al~~~~~rd~~~~~~~~i~~i~~~g~~~~ 187 (188)
T cd03762 159 ALSLAMSRDGSSGGVIRLVIITKDGVERK 187 (188)
T ss_pred HHHHHHHhccccCCCEEEEEECCCCEEEe
Confidence 99999999999999999999999999764
No 9
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-47 Score=301.43 Aligned_cols=186 Identities=28% Similarity=0.478 Sum_probs=180.2
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 028737 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (204)
Q Consensus 9 ~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (204)
+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++++++|+.+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHHHHHHHHH
Q 028737 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQ 168 (204)
Q Consensus 89 ~~l~~~~~~~r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~ 168 (204)
+++++++|.+++|||+|++|+||||+ ++|+||.+||+|++.+++ ++|+|+|+++++++||+.|+++|+.+||++++.+
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~-~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~~ 158 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDK-YTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIR 158 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcC-EEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 99999999988999999999999997 589999999999999996 9999999999999999999999999999999999
Q ss_pred HHHHhHhcccccCCcEEEEEEcCCcEEE
Q 028737 169 ALLSSVDRDCLSGWGGHVYIVTPTEIKE 196 (204)
Q Consensus 169 ~l~~~~~~d~~~~~~v~i~~i~k~g~~~ 196 (204)
||+.+.+||+.++++++|++++++|++.
T Consensus 159 ~l~~~~~rd~~~~~~i~i~iv~~~g~~~ 186 (188)
T cd03764 159 AIKSAIERDSASGDGIDVVVITKDGYKE 186 (188)
T ss_pred HHHHHHhhcCCCCCcEEEEEECCCCeEe
Confidence 9999999999999999999999999654
No 10
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.4e-47 Score=297.44 Aligned_cols=188 Identities=31% Similarity=0.530 Sum_probs=181.5
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 028737 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (204)
Q Consensus 9 ~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (204)
+|+||++++||||||+|+|.+.|.++..++.+|||+|+++++++++|+.+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHHHHHHHHH
Q 028737 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQ 168 (204)
Q Consensus 89 ~~l~~~~~~~r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~ 168 (204)
+++++++|.++.+||++++|+||||++++|+||.+||+|++.+++ ++|+|.++++++++||+.|+++||.+||++++.+
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~-~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~~~ 159 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAP-FVATGSGSKYAYGILDRGYKPDMTLEEAVELVKK 159 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecC-EEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 999999999877899999999999986789999999999999996 9999999999999999999999999999999999
Q ss_pred HHHHhHhcccccCCcEEEEEEcCCcEEEE
Q 028737 169 ALLSSVDRDCLSGWGGHVYIVTPTEIKER 197 (204)
Q Consensus 169 ~l~~~~~~d~~~~~~v~i~~i~k~g~~~~ 197 (204)
||+.+.++|+.++++++|++++++|++++
T Consensus 160 ~l~~~~~~d~~~~~~~~v~vi~~~g~~~~ 188 (189)
T cd01912 160 AIDSAIERDLSSGGGVDVAVITKDGVEEL 188 (189)
T ss_pred HHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence 99999999999999999999999998764
No 11
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-46 Score=296.50 Aligned_cols=186 Identities=19% Similarity=0.265 Sum_probs=178.4
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 028737 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (204)
Q Consensus 9 ~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (204)
+|+|||+++||||||+|+|.++|.++..++.+|||+|+++++|+++|+.+|++.+.++++.+++.|+.+++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHHHHHHHHH
Q 028737 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQ 168 (204)
Q Consensus 89 ~~l~~~~~~~r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~ 168 (204)
++|++++|..+ .||+|++|+||||++ +|+||.+||+|++.+++ ++|+|++++.++++||+.|+++||++||++++.+
T Consensus 81 ~~l~~~l~~~~-~p~~v~~ivaG~d~~-g~~ly~~d~~G~~~~~~-~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~~ 157 (189)
T cd03763 81 TMLKQHLFRYQ-GHIGAALVLGGVDYT-GPHLYSIYPHGSTDKLP-FVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCE 157 (189)
T ss_pred HHHHHHHHHcC-CccceeEEEEeEcCC-CCEEEEECCCCCEEecC-EEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 99999998764 499999999999965 79999999999999996 9999999999999999999999999999999999
Q ss_pred HHHHhHhcccccCCcEEEEEEcCCcEEEE
Q 028737 169 ALLSSVDRDCLSGWGGHVYIVTPTEIKER 197 (204)
Q Consensus 169 ~l~~~~~~d~~~~~~v~i~~i~k~g~~~~ 197 (204)
||+.+.+||+.++++++|++|+++|+++.
T Consensus 158 ~l~~~~~rd~~~~~~~~v~ii~~~g~~~~ 186 (189)
T cd03763 158 AIEAGIFNDLGSGSNVDLCVITKDGVEYL 186 (189)
T ss_pred HHHHHHHhcCcCCCceEEEEEcCCcEEEe
Confidence 99999999999999999999999999864
No 12
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=9.7e-47 Score=307.15 Aligned_cols=191 Identities=19% Similarity=0.253 Sum_probs=180.7
Q ss_pred cccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCC
Q 028737 3 ITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDM 82 (204)
Q Consensus 3 ~~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 82 (204)
....+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++++++++||+.+|++.+.+++|.+++.|+++++++|
T Consensus 34 ~~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~i 113 (247)
T PTZ00488 34 IEFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELI 113 (247)
T ss_pred cccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcccCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHHH
Q 028737 83 KPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDEL 162 (204)
Q Consensus 83 ~~~~la~~l~~~~~~~r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 162 (204)
+++.+|++|++++|.+|..|+.+++|+||||.+ ||+||++||+|++.+++ ++|+|+|+++++++||+.|+++||.+||
T Consensus 114 sv~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~-gp~Ly~vDp~Gs~~~~~-~~a~G~gs~~~~~~Le~~~k~dms~eEa 191 (247)
T PTZ00488 114 SVAAASKILANIVWNYKGMGLSMGTMICGWDKK-GPGLFYVDNDGTRLHGN-MFSCGSGSTYAYGVLDAGFKWDLNDEEA 191 (247)
T ss_pred CHHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCC-CCEEEEEcCCcceeecC-CEEEccCHHHHHHHHHhcCcCCCCHHHH
Confidence 999999999999998874455666899999965 79999999999999996 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhcccccCCcEEEEEEcCCcEE
Q 028737 163 FETVSQALLSSVDRDCLSGWGGHVYIVTPTEIK 195 (204)
Q Consensus 163 ~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~ 195 (204)
++++.+||+.+.+||..++++++|++|+++|++
T Consensus 192 i~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~ 224 (247)
T PTZ00488 192 QDLGRRAIYHATFRDAYSGGAINLYHMQKDGWK 224 (247)
T ss_pred HHHHHHHHHHHHHhccccCCCeEEEEEcCCccE
Confidence 999999999999999999999999999999965
No 13
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1.2e-45 Score=296.54 Aligned_cols=189 Identities=19% Similarity=0.280 Sum_probs=175.7
Q ss_pred cCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 028737 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPET 86 (204)
Q Consensus 7 ~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (204)
+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|++|++|+++|+.+|++.+.+++|.+++.|+++++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc---ccCccceeeEEEEEcCC-CCcEEEEEcCCCc-eeeccceeEeecchhhhHHHHhccCCCCCCHHH
Q 028737 87 FASLVSALLYEK---RFGPYFCQPVIAGLSDE-DKPFICTMDSIGA-KELAKDFVVAGTAGESLYGACEAMFKPDMEPDE 161 (204)
Q Consensus 87 la~~l~~~~~~~---r~~P~~~~~lv~G~d~~-~~p~Ly~id~~G~-~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 161 (204)
+|+.|++++|.. .+|||+|++||||||++ ++|+||++||+|+ +..++ ++|+|+|+++++++||+.|+++||.+|
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~-~~a~G~g~~~a~~~Le~~~~~~ms~ee 159 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERG-YHAVGSGSVFAKGALKKLYSPDLDEDD 159 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCC-eEEEeccHHHHHHHHHhcCCCCcCHHH
Confidence 999999999764 27899999999999964 6899999999995 66664 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhcccccCCc-------EEEEEEcCCcEEE
Q 028737 162 LFETVSQALLSSVDRDCLSGWG-------GHVYIVTPTEIKE 196 (204)
Q Consensus 162 a~~l~~~~l~~~~~~d~~~~~~-------v~i~~i~k~g~~~ 196 (204)
|++++.+||+.+.++|..+++. ++|++++++|++.
T Consensus 160 ai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~ 201 (219)
T TIGR03690 160 ALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARR 201 (219)
T ss_pred HHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEE
Confidence 9999999999999999866664 3999999999653
No 14
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.4e-45 Score=296.28 Aligned_cols=190 Identities=12% Similarity=0.074 Sum_probs=171.5
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeecccCceEEcc----CcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCC-CCC
Q 028737 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIH----DRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER-DMK 83 (204)
Q Consensus 9 ~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~ 83 (204)
|-+|||+++||||||+|+|.+.+... ..+.+|||+|+ +||+|+.||+.+|++.+.+++|.+++.|++++++ +++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~-~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDN-ISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCcc-ccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 45899999999999999998776444 44789999998 8999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHh----cc------cCccceeeEEEEEcCCCCcEEEEEcCCCceeecc---ceeEeecchhhhHHHHh
Q 028737 84 PETFASLVSALLYE----KR------FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAK---DFVVAGTAGESLYGACE 150 (204)
Q Consensus 84 ~~~la~~l~~~~~~----~r------~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~---~~~a~G~g~~~~~~~Le 150 (204)
++.+|+++++++++ .. .|||+|++|+||||++.||+||++||+|++.+++ +|+|+|. +++++++||
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Le 158 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILD 158 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHH
Confidence 99999999998643 11 4799999999999976689999999999999873 2689996 699999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEEE-EEec
Q 028737 151 AMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKE-RILK 200 (204)
Q Consensus 151 ~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~-~~~~ 200 (204)
+.|+++||++||++++++||+.+++||..++++|+|++|+|+|+++ .+-.
T Consensus 159 k~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~~~~~~ 209 (236)
T cd03765 159 RVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQVGHYRR 209 (236)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeeeeeeEE
Confidence 9999999999999999999999999999999999999999999987 4433
No 15
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-45 Score=297.51 Aligned_cols=188 Identities=14% Similarity=0.201 Sum_probs=175.8
Q ss_pred ccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCC
Q 028737 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (204)
Q Consensus 4 ~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 83 (204)
.+++|+|+|||+++||||||+|++.+ +.++.+++.+||++|++|++|+++|+.+|++.+.++++.+++.|+++++++++
T Consensus 23 av~~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 101 (227)
T cd03750 23 AVSSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIP 101 (227)
T ss_pred HHHcCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35789999999999999999999988 57888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--hcc--cCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCH
Q 028737 84 PETFASLVSALLY--EKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP 159 (204)
Q Consensus 84 ~~~la~~l~~~~~--~~r--~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 159 (204)
++.+++.|+++++ +++ .|||+|++|++|||++ +|+||++||+|++.+++ ++|+|+|+++++++||+.|+++||+
T Consensus 102 v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~-g~~Ly~~d~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~ms~ 179 (227)
T cd03750 102 VSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPYLYQVDPSGSYFTWK-ATAIGKNYSNAKTFLEKRYNEDLEL 179 (227)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCC-CCEEEEECCCCCEEeee-EEEECCCCHHHHHHHHhhccCCCCH
Confidence 9999999999984 444 6899999999999975 89999999999999996 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcccccCCcEEEEEEcCC-cEE
Q 028737 160 DELFETVSQALLSSVDRDCLSGWGGHVYIVTPT-EIK 195 (204)
Q Consensus 160 ~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~-g~~ 195 (204)
+||++++++||+.+.+++. ++++++|.+++++ |.+
T Consensus 180 eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~~~ 215 (227)
T cd03750 180 EDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKGFR 215 (227)
T ss_pred HHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCCEE
Confidence 9999999999999999874 7889999999986 554
No 16
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-45 Score=282.96 Aligned_cols=203 Identities=26% Similarity=0.403 Sum_probs=195.8
Q ss_pred CCcccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCC
Q 028737 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER 80 (204)
Q Consensus 1 ~~~~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 80 (204)
.+||..+|+|+|||++.|+.|+|+|+|.+.|.-+.++..+|||+++|+++++.+|+.+|+..|.+.++...+.|++++++
T Consensus 22 f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k 101 (235)
T KOG0179|consen 22 FSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNK 101 (235)
T ss_pred CCccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccc
Confidence 47999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccC-------
Q 028737 81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMF------- 153 (204)
Q Consensus 81 ~~~~~~la~~l~~~~~~~r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~------- 153 (204)
.|++..+|++|+.++|.+|+.||.+..+++|+|++|++.+|+.||-|++.+.. +.|-|+++..++++|+...
T Consensus 102 ~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~-~~AgGsa~~mI~PfLDnQi~~kn~~~ 180 (235)
T KOG0179|consen 102 KMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVT-CRAGGSAASMIQPFLDNQIGHKNQNL 180 (235)
T ss_pred cccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeee-eecCCcchhhhhhhhhhhccCcCccc
Confidence 99999999999999999999999999999999999999999999999999986 9999999999999998763
Q ss_pred ----CCCCCHHHHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEEEEEeccCCC
Q 028737 154 ----KPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 204 (204)
Q Consensus 154 ----~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~~~~~~~~~ 204 (204)
++.+|+++|+.++..+|..|.+||+.+|++++|+|++|||++++.+|||+|
T Consensus 181 e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~e~~~LrkD 235 (235)
T KOG0179|consen 181 ENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEVETLPLRKD 235 (235)
T ss_pred ccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEEEeeeccCC
Confidence 245899999999999999999999999999999999999999999999998
No 17
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-45 Score=293.26 Aligned_cols=185 Identities=14% Similarity=0.182 Sum_probs=173.4
Q ss_pred ccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCC
Q 028737 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (204)
Q Consensus 4 ~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 83 (204)
.+++|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|+++++|++||+.+|++.+.++++.+++.|+++++++++
T Consensus 25 a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 104 (213)
T cd03752 25 AISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIP 104 (213)
T ss_pred HHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35789999999999999999999999887776779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--hc--ccCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCH
Q 028737 84 PETFASLVSALLY--EK--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP 159 (204)
Q Consensus 84 ~~~la~~l~~~~~--~~--r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 159 (204)
++.+++.|+.+++ ++ +.|||+|++|++|||++.+|+||.+||+|++.+++ ++|+|+++++++++||+.|+++||.
T Consensus 105 v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~-~~a~G~gs~~~~~~Le~~y~~~ms~ 183 (213)
T cd03752 105 VEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWK-ATAIGNNNQAAQSLLKQDYKDDMTL 183 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeee-EEEECCCcHHHHHHHHHhccCCCCH
Confidence 9999999998864 32 36899999999999976689999999999999996 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcccccCCcEEEEEE
Q 028737 160 DELFETVSQALLSSVDRDCLSGWGGHVYIV 189 (204)
Q Consensus 160 ~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i 189 (204)
+||++++.+||+.+.+||..++.+++|.++
T Consensus 184 eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 184 EEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 999999999999999999888899999874
No 18
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=7.1e-45 Score=293.12 Aligned_cols=194 Identities=25% Similarity=0.299 Sum_probs=180.7
Q ss_pred ccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCC
Q 028737 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (204)
Q Consensus 4 ~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 83 (204)
.+++|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++|++||+.+|++.+.++++.+++.|+++++++++
T Consensus 25 av~~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 103 (224)
T TIGR03633 25 AVKRGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPID 103 (224)
T ss_pred HHHcCCCEEEEEECCEEEEEEeccCC-ccccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35789999999999999999999997 56777789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--cc--cCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCH
Q 028737 84 PETFASLVSALLYE--KR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP 159 (204)
Q Consensus 84 ~~~la~~l~~~~~~--~r--~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 159 (204)
++.++++|+.+++. ++ .|||+|++||||+|+ ++|+||.+||+|++.+++ ++|+|+|+++++++|++.|+++|+.
T Consensus 104 ~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~-~~a~G~g~~~~~~~L~~~~~~~~~~ 181 (224)
T TIGR03633 104 VETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYK-ATAIGAGRQAVTEFLEKEYREDLSL 181 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecce-EEEECCCCHHHHHHHHHhccCCCCH
Confidence 99999999999744 32 689999999999995 589999999999999996 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEEEEEecc
Q 028737 160 DELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKG 201 (204)
Q Consensus 160 ~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~~~~~~ 201 (204)
+||++++.+||+.+.+ |+.++++++|++++++|..++.++.
T Consensus 182 eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~ 222 (224)
T TIGR03633 182 DEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSV 222 (224)
T ss_pred HHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCC
Confidence 9999999999999988 8889999999999999987777664
No 19
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=5.8e-45 Score=298.50 Aligned_cols=189 Identities=17% Similarity=0.188 Sum_probs=177.8
Q ss_pred ccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCC
Q 028737 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (204)
Q Consensus 4 ~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 83 (204)
.+++|+|+|||+++||||||+|+|.+++.++.+++.+|||+|+++++|+++|+.+|++.+.+.+|.+++.|++.++.+++
T Consensus 27 av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 106 (253)
T PTZ00246 27 AINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQP 106 (253)
T ss_pred HHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 46789999999999999999999999988777778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--c--ccCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCH
Q 028737 84 PETFASLVSALLYE--K--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP 159 (204)
Q Consensus 84 ~~~la~~l~~~~~~--~--r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 159 (204)
++.+++.++.+++. + ++|||+|++|++|||++++|+||++||+|++.+++ ++|+|+|+++++++||+.|+++|+.
T Consensus 107 v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~-~~a~G~gs~~~~~~Le~~~~~~ms~ 185 (253)
T PTZ00246 107 VEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWK-ATAIGQNNQTAQSILKQEWKEDLTL 185 (253)
T ss_pred HHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecce-EEEECCCcHHHHHHHHHhccCCCCH
Confidence 99999999988644 2 36899999999999976689999999999999986 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcccccCCcEEEEEEcCCc
Q 028737 160 DELFETVSQALLSSVDRDCLSGWGGHVYIVTPTE 193 (204)
Q Consensus 160 ~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g 193 (204)
+||++++.+||+.+.++|..++++++|++++++|
T Consensus 186 eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~ 219 (253)
T PTZ00246 186 EQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGE 219 (253)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC
Confidence 9999999999999999999999999999999986
No 20
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.5e-44 Score=294.23 Aligned_cols=194 Identities=21% Similarity=0.246 Sum_probs=179.1
Q ss_pred ccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCC
Q 028737 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (204)
Q Consensus 4 ~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 83 (204)
.+++|+|+|||+++||||||+|++.+ +.+...++.+||++|+++++|++||+.+|++.+.++++.+++.|+..++++++
T Consensus 32 av~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 110 (241)
T PRK03996 32 AVKRGTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIG 110 (241)
T ss_pred HHHhCCCEEEEEeCCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 36789999999999999999999998 56777788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--cc--cCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCH
Q 028737 84 PETFASLVSALLYE--KR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP 159 (204)
Q Consensus 84 ~~~la~~l~~~~~~--~r--~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 159 (204)
++.+++.++.+++. ++ .|||+|++|+||||.+ +|+||.+||+|++.+++ ++|+|+|++.++++||+.|+++|++
T Consensus 111 ~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~-gp~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~ 188 (241)
T PRK03996 111 VETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDG-GPRLFETDPSGAYLEYK-ATAIGAGRDTVMEFLEKNYKEDLSL 188 (241)
T ss_pred HHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCC-cCEEEEECCCCCeecce-EEEECCCcHHHHHHHHHhcccCCCH
Confidence 99999999999854 32 6899999999999974 79999999999999996 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEEEEEecc
Q 028737 160 DELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKG 201 (204)
Q Consensus 160 ~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~~~~~~ 201 (204)
+||++++.+||+.+.+++ .++++++|++++++|..++.++.
T Consensus 189 eeai~l~~~al~~~~~~~-~~~~~i~i~ii~~~~~~~~~~~~ 229 (241)
T PRK03996 189 EEAIELALKALAKANEGK-LDPENVEIAYIDVETKKFRKLSV 229 (241)
T ss_pred HHHHHHHHHHHHHHhccC-CCCCcEEEEEEECCCCcEEECCH
Confidence 999999999999998864 67889999999999977776653
No 21
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-44 Score=288.11 Aligned_cols=181 Identities=18% Similarity=0.311 Sum_probs=168.6
Q ss_pred ccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCC
Q 028737 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (204)
Q Consensus 4 ~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 83 (204)
.+++|+|+|||+++||||||+|++.+. .++.++..+||++|+++++|++||+.+|++.+.+++|.+++.|+++++++|+
T Consensus 23 av~~G~t~Igik~~dgVvlaad~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 101 (207)
T cd03755 23 AVRKGTTAVGVRGKDCVVLGVEKKSVA-KLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVT 101 (207)
T ss_pred HHHcCCCEEEEEeCCEEEEEEecCCCC-cccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 367899999999999999999998765 4666678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhcc--cCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCH
Q 028737 84 PETFASLVSALL--YEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP 159 (204)
Q Consensus 84 ~~~la~~l~~~~--~~~r--~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 159 (204)
++.+++.++.++ |+++ .|||+|++|++|||++++|+||++||+|++.+++ ++|+|+|+++++++||+.|+++||.
T Consensus 102 ~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~ms~ 180 (207)
T cd03755 102 VEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWK-ANAIGRNSKTVREFLEKNYKEEMTR 180 (207)
T ss_pred HHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcce-EEEECCCCHHHHHHHHhhccCCCCH
Confidence 999999999998 5554 6899999999999987789999999999999996 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcccccCCcEEEEEE
Q 028737 160 DELFETVSQALLSSVDRDCLSGWGGHVYIV 189 (204)
Q Consensus 160 ~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i 189 (204)
+||++++.+||+.+.+ .++.++||+++
T Consensus 181 eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 181 DDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred HHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 9999999999999987 56789999875
No 22
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=3.2e-44 Score=281.92 Aligned_cols=185 Identities=30% Similarity=0.478 Sum_probs=170.8
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeecc-cCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCC
Q 028737 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATD-FQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (204)
Q Consensus 5 ~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 83 (204)
+++|+|+|||+++||||||+|+|.++|+.+..++ .+|||+|++++++++||..+|++.+.++++.+++.|++.++.+++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 3689999999999999999999999888886666 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH----HhcccCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCH
Q 028737 84 PETFASLVSALL----YEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP 159 (204)
Q Consensus 84 ~~~la~~l~~~~----~~~r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 159 (204)
++.+++.++..+ +..++||+++++|+||||++++|+||.+||+|++.++++++|+|+|+++++++||+.|+++|++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~ 160 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSL 160 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSH
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCH
Confidence 996666666554 4445789999999999998877999999999999998239999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcccccCCcEEEEEE
Q 028737 160 DELFETVSQALLSSVDRDCLSGWGGHVYIV 189 (204)
Q Consensus 160 ~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i 189 (204)
+||++++.+||+.+.++|..++++++|++|
T Consensus 161 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 161 EEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 999999999999999999999999999986
No 23
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.1e-44 Score=286.97 Aligned_cols=183 Identities=13% Similarity=0.136 Sum_probs=169.1
Q ss_pred ccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCC
Q 028737 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (204)
Q Consensus 4 ~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 83 (204)
.+++|+|+|||+++||||||+|++.+. .+...++.+|||+|++|++|+++|+.+|++.+.+++|.+++.|+.+++++++
T Consensus 26 a~~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~ 104 (212)
T cd03751 26 AVENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIP 104 (212)
T ss_pred HHhcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 357899999999999999999999876 5666678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc----ccCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCH
Q 028737 84 PETFASLVSALLYEK----RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP 159 (204)
Q Consensus 84 ~~~la~~l~~~~~~~----r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 159 (204)
++.+++.|+.+++.. .+|||+|++|++|||++ ||+||++||+|++.+++ ++|+|+|+++++++||+.|+++||+
T Consensus 105 v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~-gp~Ly~~D~~Gs~~~~~-~~a~G~g~~~a~~~Lek~~~~dms~ 182 (212)
T cd03751 105 VKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSD-GPQLYMIEPSGVSYGYF-GCAIGKGKQAAKTELEKLKFSELTC 182 (212)
T ss_pred HHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCC-cCEEEEECCCCCEEeeE-EEEECCCCHHHHHHHHHhccCCCCH
Confidence 999999999987542 26899999999999964 89999999999999996 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcccccCCcEEEEEE
Q 028737 160 DELFETVSQALLSSVDRDCLSGWGGHVYIV 189 (204)
Q Consensus 160 ~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i 189 (204)
+||++++.++|+.+++.+.....++||.++
T Consensus 183 eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 183 REAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred HHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 999999999999999966667789998864
No 24
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.7e-44 Score=284.62 Aligned_cols=182 Identities=20% Similarity=0.213 Sum_probs=168.4
Q ss_pred ccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCC
Q 028737 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (204)
Q Consensus 4 ~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 83 (204)
.+++|+|+|||+++||||||+|+|.+.+ +.++.+|||+|+++++|++||+.+|++.+.++++.+++.|+++++++++
T Consensus 23 av~~G~t~IgIk~~dgVvlaad~r~~~~---l~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 99 (211)
T cd03749 23 AVKQGSATVGLKSKTHAVLVALKRATSE---LSSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIP 99 (211)
T ss_pred HHhcCCCEEEEEeCCEEEEEEeccCccc---cCCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3578999999999999999999997764 3457799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--c--ccCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCC--CCC
Q 028737 84 PETFASLVSALLYE--K--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFK--PDM 157 (204)
Q Consensus 84 ~~~la~~l~~~~~~--~--r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~ 157 (204)
++.+|+.++.+++. + +.|||+|++|++|||++ ||+||++||+|++.+++ ++|+|+|++.++++||+.|+ ++|
T Consensus 100 v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~-gp~Ly~~Dp~G~~~~~~-~~a~G~g~~~a~~~Le~~~~~~~~m 177 (211)
T cd03749 100 VSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDES-GPHLFQTCPSGNYFEYK-ATSIGARSQSARTYLERHFEEFEDC 177 (211)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCC-CCeEEEECCCcCEeeee-EEEECCCcHHHHHHHHHhhccccCC
Confidence 99999999998754 3 36899999999999975 79999999999999996 99999999999999999998 699
Q ss_pred CHHHHHHHHHHHHHHhHhccc-ccCCcEEEEEEc
Q 028737 158 EPDELFETVSQALLSSVDRDC-LSGWGGHVYIVT 190 (204)
Q Consensus 158 s~~ea~~l~~~~l~~~~~~d~-~~~~~v~i~~i~ 190 (204)
|.+||+++++++|+.++++|. .++.++||++++
T Consensus 178 s~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 178 SLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 999999999999999999886 788999999984
No 25
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-43 Score=283.70 Aligned_cols=183 Identities=21% Similarity=0.280 Sum_probs=171.4
Q ss_pred ccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCC
Q 028737 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (204)
Q Consensus 4 ~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 83 (204)
.+++|+|+||++++||||||+|++.+ +.++..++.+||++|+++++|++||+.+|++.+.++++.+++.|+.+++++++
T Consensus 24 av~~G~t~igik~~dgvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 102 (211)
T cd03756 24 AVKRGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPID 102 (211)
T ss_pred HHHcCCCEEEEEECCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 36789999999999999999999987 56777789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--c--ccCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCH
Q 028737 84 PETFASLVSALLYE--K--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP 159 (204)
Q Consensus 84 ~~~la~~l~~~~~~--~--r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 159 (204)
++.+++.++.+++. + +.|||+|++|++|||+. +|+||.+||+|++.+++ ++|+|+|+++++++||+.|+++|+.
T Consensus 103 ~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~-~~~ly~vd~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~m~~ 180 (211)
T cd03756 103 VEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDG-GPRLFETDPSGAYNEYK-ATAIGSGRQAVTEFLEKEYKEDMSL 180 (211)
T ss_pred HHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCC-CCEEEEECCCCCeeeeE-EEEECCCCHHHHHHHHhhccCCCCH
Confidence 99999999998754 3 36899999999999974 89999999999999996 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcccccCCcEEEEEEc
Q 028737 160 DELFETVSQALLSSVDRDCLSGWGGHVYIVT 190 (204)
Q Consensus 160 ~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~ 190 (204)
+||++++.+||+.+.+++. ++++++|++|+
T Consensus 181 ~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 181 EEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred HHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 9999999999999999886 88999999986
No 26
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.8e-44 Score=285.01 Aligned_cols=182 Identities=18% Similarity=0.264 Sum_probs=167.5
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCH
Q 028737 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (204)
Q Consensus 5 ~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (204)
.++|+|+|||+++||||||+|+|.+.+ ++..+..+|||+|+++++|++||+.+|++.+.+++|.+++.|++++++++++
T Consensus 26 ~~~g~t~igi~~~d~Vvlaad~r~~~~-~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v 104 (215)
T cd03754 26 KNAGLTSVAVRGKDCAVVVTQKKVPDK-LIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMPV 104 (215)
T ss_pred hcCCccEEEEEeCCEEEEEEecccccc-ccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 346889999999999999999998764 4455688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--HHhcc--cCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCC--C-
Q 028737 85 ETFASLVSAL--LYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPD--M- 157 (204)
Q Consensus 85 ~~la~~l~~~--~~~~r--~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~--~- 157 (204)
+.+|+.++.+ +|+++ .|||++++|+||||++++|+||++||+|++.+++ ++|+|+|++.++++||+.|+++ |
T Consensus 105 ~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~-~~a~G~gs~~~~~~Le~~~~~~~~~~ 183 (215)
T cd03754 105 DVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYK-ATAAGVKEQEATNFLEKKLKKKPDLI 183 (215)
T ss_pred HHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEE-EEEECCCcHHHHHHHHHHhccccccC
Confidence 9999999997 46654 5799999999999976789999999999999996 9999999999999999999985 7
Q ss_pred -CHHHHHHHHHHHHHHhHhcccccCCcEEEEEE
Q 028737 158 -EPDELFETVSQALLSSVDRDCLSGWGGHVYIV 189 (204)
Q Consensus 158 -s~~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i 189 (204)
|.+||++++++||+.+.++|.. ++++||.++
T Consensus 184 ~s~eeai~l~~~al~~~~~rd~~-~~~~ei~~~ 215 (215)
T cd03754 184 ESYEETVELAISCLQTVLSTDFK-ATEIEVGVV 215 (215)
T ss_pred CCHHHHHHHHHHHHHHHhcccCC-CCcEEEEEC
Confidence 9999999999999999999965 889999875
No 27
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1.4e-43 Score=282.72 Aligned_cols=183 Identities=20% Similarity=0.273 Sum_probs=171.4
Q ss_pred ccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCC
Q 028737 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (204)
Q Consensus 4 ~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 83 (204)
..++|+|+||++++||||||+|++.+.+ ++..++.+||++|++++++++||..+|++.+.+.++.+++.|+.+++++++
T Consensus 23 ~~~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~ 101 (209)
T cd01911 23 AVKNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIP 101 (209)
T ss_pred HHHcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3578999999999999999999999864 566688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--hcc--cCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCH
Q 028737 84 PETFASLVSALLY--EKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP 159 (204)
Q Consensus 84 ~~~la~~l~~~~~--~~r--~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 159 (204)
++.+|++++++++ +++ .|||+|++||+|||++++|+||.+||.|++.++. ++++|+|+++++++||+.|+++|+.
T Consensus 102 ~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~-~~a~G~g~~~~~~~L~~~~~~~ms~ 180 (209)
T cd01911 102 VEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYK-ATAIGKGSQEAKTFLEKRYKKDLTL 180 (209)
T ss_pred HHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeee-EEEeCCCcHHHHHHHHHhcccCCCH
Confidence 9999999999884 433 6799999999999987789999999999999985 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcccccCCcEEEEEE
Q 028737 160 DELFETVSQALLSSVDRDCLSGWGGHVYIV 189 (204)
Q Consensus 160 ~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i 189 (204)
+||++++.+||+.+.++|. ++.+++|+++
T Consensus 181 ~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 181 EEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred HHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 9999999999999999998 9999999875
No 28
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=2.8e-43 Score=274.78 Aligned_cols=180 Identities=31% Similarity=0.466 Sum_probs=172.5
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 028737 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (204)
Q Consensus 9 ~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (204)
+|+|||+++||||||+|++.+.+....+++.+|||+|+++++++++|..+|++.+.++++.++..|+.+++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999998887788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccc--CccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHHHHHHH
Q 028737 89 SLVSALLYEKRF--GPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETV 166 (204)
Q Consensus 89 ~~l~~~~~~~r~--~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~ 166 (204)
++|++++|.++. |||++++|+||||++++|+||.+||+|++.+++ ++|+|+++++++++||+.|+++||.+||++++
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~ 159 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYK-ATAIGSGSQYALGILEKLYKPDMTLEEAIELA 159 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeecc-EEEECCCcHHHHHHHHHHccCCCCHHHHHHHH
Confidence 999999998775 999999999999986699999999999999996 99999999999999999999999999999999
Q ss_pred HHHHHHhHhcccccCCcEEEEEE
Q 028737 167 SQALLSSVDRDCLSGWGGHVYIV 189 (204)
Q Consensus 167 ~~~l~~~~~~d~~~~~~v~i~~i 189 (204)
.+||+.+.++|..++.+++|.++
T Consensus 160 ~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 160 LKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHcccCCCCCCEEEEEC
Confidence 99999999999988999999875
No 29
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.6e-43 Score=279.01 Aligned_cols=182 Identities=19% Similarity=0.242 Sum_probs=168.4
Q ss_pred ccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCC
Q 028737 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (204)
Q Consensus 4 ~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 83 (204)
.+++|+|+||++++||||||+|++.+. .+...++.+||++|+++++|++||+.+|++.+.+.++.+++.|+.+++++++
T Consensus 23 a~~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 101 (213)
T cd03753 23 AIKLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMT 101 (213)
T ss_pred HHhcCCCEEEEEeCCEEEEEEecccCC-cCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 357899999999999999999999976 4566778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--cc-------cCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCC
Q 028737 84 PETFASLVSALLYE--KR-------FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFK 154 (204)
Q Consensus 84 ~~~la~~l~~~~~~--~r-------~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~ 154 (204)
++.+++.|+.++|. ++ .|||+|++|+||||+ +||+||.+||+|++.+++ ++|+|+++++++++|++.|+
T Consensus 102 ~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly~vd~~G~~~~~~-~~a~G~~~~~~~~~L~~~~~ 179 (213)
T cd03753 102 VESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLFHTDPSGTFTRCD-AKAIGSGSEGAQSSLQEKYH 179 (213)
T ss_pred HHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEEEECCCCCeeccc-EEEECCCcHHHHHHHHhhcc
Confidence 99999999999865 21 489999999999996 489999999999999985 99999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhHhcccccCCcEEEEEE
Q 028737 155 PDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIV 189 (204)
Q Consensus 155 ~~~s~~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i 189 (204)
++||.+||++++++||+.+.+++ .+++++||+++
T Consensus 180 ~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 180 KDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred CCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 99999999999999999998876 67789999875
No 30
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-43 Score=267.44 Aligned_cols=187 Identities=20% Similarity=0.225 Sum_probs=172.8
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCH
Q 028737 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (204)
Q Consensus 5 ~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (204)
.+.|+|.|||+.++|||||++||+++ .+..+++..||++|++||+|++||+.+|++.+++++|.++++|.+.|++++++
T Consensus 31 ikLGsTaIGv~TkEgVvL~vEKritS-pLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~V 109 (241)
T KOG0176|consen 31 IKLGSTAIGVKTKEGVVLAVEKRITS-PLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPISV 109 (241)
T ss_pred HhcCCceeeeeccceEEEEEeccccC-cccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCcccH
Confidence 46899999999999999999999987 56678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hc-----c--cCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCC
Q 028737 85 ETFASLVSALLY--EK-----R--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP 155 (204)
Q Consensus 85 ~~la~~l~~~~~--~~-----r--~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~ 155 (204)
+.+.+.+|++.. +. + .|||||++|+||+|. +||+||+.||||++.+++ +.|||+|++-+++.|++.|.+
T Consensus 110 Es~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~-~gpqL~h~dPSGtf~~~~-AKAIGSgsEga~~~L~~e~~~ 187 (241)
T KOG0176|consen 110 ESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE-TGPQLYHLDPSGTFIRYK-AKAIGSGSEGAESSLQEEYHK 187 (241)
T ss_pred HHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC-CCceEEEeCCCCceEEec-ceeccccchHHHHHHHHHHhh
Confidence 999999999852 21 1 389999999999996 489999999999999996 999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEE
Q 028737 156 DMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIK 195 (204)
Q Consensus 156 ~~s~~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~ 195 (204)
+++++||+.+++..|+..++... +..|+++.+++++|--
T Consensus 188 ~ltL~ea~~~~L~iLkqVMeeKl-~~~Nvev~~vt~e~~f 226 (241)
T KOG0176|consen 188 DLTLKEAEKIVLKILKQVMEEKL-NSNNVEVAVVTPEGEF 226 (241)
T ss_pred cccHHHHHHHHHHHHHHHHHHhc-CccceEEEEEcccCce
Confidence 99999999999999999998875 4569999999998543
No 31
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-43 Score=259.38 Aligned_cols=204 Identities=69% Similarity=1.157 Sum_probs=199.3
Q ss_pred CCcccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCC
Q 028737 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER 80 (204)
Q Consensus 1 ~~~~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 80 (204)
|++++.+|+++||+++|+||.||+|.|........+.+.+|||+++|+++++.+|+..|.+.+.++++...+.|++++++
T Consensus 1 m~i~synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R 80 (204)
T KOG0180|consen 1 MSIMSYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREER 80 (204)
T ss_pred CcceeecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhc
Confidence 78999999999999999999999999998888888999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHH
Q 028737 81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPD 160 (204)
Q Consensus 81 ~~~~~~la~~l~~~~~~~r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ 160 (204)
.|.++.++++++.++|++|+-||.+..+|||+|++++|+|+..|.-|.....++|++.|.+++..++..|..|+|+|..|
T Consensus 81 ~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd 160 (204)
T KOG0180|consen 81 EIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPD 160 (204)
T ss_pred ccCcHHHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999988778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEEEEEeccCCC
Q 028737 161 ELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 204 (204)
Q Consensus 161 ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~~~~~~~~~ 204 (204)
+..+.+.+||..+.+||+.+||...+++|+||.+.+|.+++|+|
T Consensus 161 ~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv~~r~lK~RmD 204 (204)
T KOG0180|consen 161 ELFETISQALLNAVDRDALSGWGAVVYIITKDKVTKRTLKGRMD 204 (204)
T ss_pred HHHHHHHHHHHhHhhhhhhccCCeEEEEEccchhhhhhhhhcCC
Confidence 99999999999999999999999999999999999999999998
No 32
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=5.9e-42 Score=276.00 Aligned_cols=182 Identities=15% Similarity=0.188 Sum_probs=164.0
Q ss_pred ccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcC-CCC
Q 028737 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREE-RDM 82 (204)
Q Consensus 4 ~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~ 82 (204)
..++|+|+|||+++||||||+|++. ++.+|||+|+||++|+++|+.+|++.++++++.+++.|++.++ .++
T Consensus 23 av~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~ 94 (228)
T TIGR03691 23 GIARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDV 94 (228)
T ss_pred HHHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCc
Confidence 3578999999999999999999962 4589999999999999999999999999999999999999997 689
Q ss_pred CHHHHHHHHHHHHHhc---ccCccceeeEEEEEcC-CCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCC
Q 028737 83 KPETFASLVSALLYEK---RFGPYFCQPVIAGLSD-EDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDME 158 (204)
Q Consensus 83 ~~~~la~~l~~~~~~~---r~~P~~~~~lv~G~d~-~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s 158 (204)
+++.+|+.+++.++.. +.|||+|++|++|||+ +.+|+||++||+|++.+++.++|+|+|++.++++||++|+++||
T Consensus 95 ~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~~ms 174 (228)
T TIGR03691 95 TGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYRDGLS 174 (228)
T ss_pred cHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcCCCCC
Confidence 9999999888876432 3689999999999985 45899999999999998643799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHh--cccccCCcEEEEEEcCCc
Q 028737 159 PDELFETVSQALLSSVD--RDCLSGWGGHVYIVTPTE 193 (204)
Q Consensus 159 ~~ea~~l~~~~l~~~~~--~d~~~~~~v~i~~i~k~g 193 (204)
.+||++++++||+.+.+ ++..+..++||.++++++
T Consensus 175 ~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~ 211 (228)
T TIGR03691 175 LADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSR 211 (228)
T ss_pred HHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCC
Confidence 99999999999999964 666888999999999765
No 33
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-40 Score=252.55 Aligned_cols=197 Identities=21% Similarity=0.341 Sum_probs=187.9
Q ss_pred ccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCC
Q 028737 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (204)
Q Consensus 4 ~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 83 (204)
+.+.|||++|+++++||||++|+|.+.|..+.++..+|+.+|.|+|+||-||..+|.|.+.+.++.....|..+++.+++
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHHHH
Q 028737 84 PETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELF 163 (204)
Q Consensus 84 ~~~la~~l~~~~~~~r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~ 163 (204)
+...|+.++++.|++|.. +-+++||||||+..|.++|.+--.|+..+.+ ++.-|+|+.+++.+++..|+++|++||++
T Consensus 95 v~~aA~l~r~~~Y~~re~-L~AgliVAGwD~~~gGqVY~iplGG~l~rq~-~aIgGSGStfIYGf~D~~~r~nMt~EE~~ 172 (224)
T KOG0174|consen 95 VHTAASLFREICYNYREM-LSAGLIVAGWDEKEGGQVYSIPLGGSLTRQP-FAIGGSGSTFIYGFCDANWRPNMTLEECV 172 (224)
T ss_pred HHHHHHHHHHHHHhCHHh-hhcceEEeecccccCceEEEeecCceEeecc-eeeccCCceeeeeeehhhcCCCCCHHHHH
Confidence 999999999999998732 6799999999998889999999889888864 98889999999999999999999999999
Q ss_pred HHHHHHHHHhHhcccccCCcEEEEEEcCCcEEEEEeccC
Q 028737 164 ETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGR 202 (204)
Q Consensus 164 ~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~~~~~~~ 202 (204)
+++.+|+..+++||-++|+-|.+.+|+++|+.++.||+.
T Consensus 173 ~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d 211 (224)
T KOG0174|consen 173 RFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGD 211 (224)
T ss_pred HHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCC
Confidence 999999999999999999999999999999999999875
No 34
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-40 Score=255.16 Aligned_cols=191 Identities=15% Similarity=0.179 Sum_probs=179.9
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCH
Q 028737 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (204)
Q Consensus 5 ~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (204)
.++.+|+||+-.+||||||++++.+++.+-.+...+||++|+|+|+|+++|+++|+..|++.+|..+|.|.+++++++|+
T Consensus 28 is~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~ 107 (249)
T KOG0178|consen 28 ISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPC 107 (249)
T ss_pred HhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 46889999999999999999999998888778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc----cCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCC-CH
Q 028737 85 ETFASLVSALLYEKR----FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDM-EP 159 (204)
Q Consensus 85 ~~la~~l~~~~~~~r----~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~-s~ 159 (204)
+.|++.++++++.++ .||||||+|.+|||...|.+||+.||||++..|+ +.++|.+++.+++.|+..|+++. ++
T Consensus 108 eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWk-a~ciG~N~~Aa~s~Lkqdykdd~~~~ 186 (249)
T KOG0178|consen 108 EQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWK-ATCIGANSGAAQSMLKQDYKDDENDL 186 (249)
T ss_pred HHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccc-eeeeccchHHHHHHHHhhhccccccH
Confidence 999999999985433 6899999999999988889999999999999998 99999999999999999999876 59
Q ss_pred HHHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEEE
Q 028737 160 DELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKE 196 (204)
Q Consensus 160 ~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~ 196 (204)
+||..++++.|...++.+..+.+.+||..++++..+.
T Consensus 187 ~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~ 223 (249)
T KOG0178|consen 187 EEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKT 223 (249)
T ss_pred HHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCce
Confidence 9999999999999999999999999999999987665
No 35
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-38 Score=240.02 Aligned_cols=189 Identities=21% Similarity=0.316 Sum_probs=180.9
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 028737 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (204)
Q Consensus 9 ~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (204)
.+++||++.|+|++|+|+..+.+-++..++.+|++++++++.|+++|..+|+.++.+++.+.++.|++++|.++|++.+|
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-cc-cCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHHHHHHH
Q 028737 89 SLVSALLYE-KR-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETV 166 (204)
Q Consensus 89 ~~l~~~~~~-~r-~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~ 166 (204)
++.++.+.+ -| .+||.|++|+||+|++.||.||++|..|+..+.+ |++.|.++.++.++|++.|+||||.+||+.+.
T Consensus 82 hFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vp-y~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lm 160 (200)
T KOG0177|consen 82 HFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVP-YAAHGYGSYFCLSILDRYYKPDMTIEEALDLM 160 (200)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCC-cccccchhhhhHHHHHhhhCCCCCHHHHHHHH
Confidence 999999865 24 6799999999999998889999999999999986 99999999999999999999999999999999
Q ss_pred HHHHHHhHhcccccCCcEEEEEEcCCcEEEEE
Q 028737 167 SQALLSSVDRDCLSGWGGHVYIVTPTEIKERI 198 (204)
Q Consensus 167 ~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~~~ 198 (204)
.+|+.++-+|-..+..+|.|.+|+|||++...
T Consensus 161 kKCv~El~kRlvin~~~f~v~IVdkdGir~~~ 192 (200)
T KOG0177|consen 161 KKCVLELKKRLVINLPGFIVKIVDKDGIRKLD 192 (200)
T ss_pred HHHHHHHHHhcccCCCCcEEEEEcCCCceecc
Confidence 99999999999888999999999999998754
No 36
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-39 Score=246.94 Aligned_cols=185 Identities=18% Similarity=0.268 Sum_probs=171.2
Q ss_pred ccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCC
Q 028737 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (204)
Q Consensus 4 ~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 83 (204)
.+.+|+|+||++++|+|||+.+++-. ..|...+...||..+++|++++++|+.+|++.+++++|.+|+.|+++.+.+++
T Consensus 26 AvrkGstaVgvrg~~~vvlgvEkkSv-~~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvt 104 (249)
T KOG0183|consen 26 AVRKGSTAVGVRGNNCVVLGVEKKSV-PKLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVT 104 (249)
T ss_pred HHhcCceEEEeccCceEEEEEeecch-hhhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcH
Confidence 35789999999999999999999854 47788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc----cCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCC--C
Q 028737 84 PETFASLVSALLYEKR----FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPD--M 157 (204)
Q Consensus 84 ~~~la~~l~~~~~~~r----~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~--~ 157 (204)
++.++++|+++.+.++ .||||++.|++|+|+++.|+||++||+|.+.+|+ +.|+|.+++.+..+||+.|.+. .
T Consensus 105 veyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewk-a~aiGr~sk~VrEflEK~y~e~~~~ 183 (249)
T KOG0183|consen 105 VEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWK-ANAIGRSSKTVREFLEKNYKEEAIA 183 (249)
T ss_pred HHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhh-ccccccccHHHHHHHHHhccccccc
Confidence 9999999999874332 6899999999999999899999999999999998 9999999999999999999876 7
Q ss_pred CHHHHHHHHHHHHHHhHhcccccCCcEEEEEEcCCc
Q 028737 158 EPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTE 193 (204)
Q Consensus 158 s~~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g 193 (204)
+..+++++++++|......+ ++|++++++++++
T Consensus 184 ~~~~~ikL~ir~LleVvqs~---~~nie~aVm~~~~ 216 (249)
T KOG0183|consen 184 TEGETIKLAIRALLEVVQSG---GKNIEVAVMKRRK 216 (249)
T ss_pred ccccHHHHHHHHHHHHhhcC---CCeeEEEEEecCC
Confidence 88999999999999998765 6799999999877
No 37
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-38 Score=249.38 Aligned_cols=192 Identities=16% Similarity=0.249 Sum_probs=180.5
Q ss_pred CcccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCC
Q 028737 2 SITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERD 81 (204)
Q Consensus 2 ~~~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 81 (204)
+..+..|||++|+.++||||+++|+|.+.|..+...+.+||+.|.++||||.+|..+|...+.+.+..+.+.++++.++.
T Consensus 31 p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~ 110 (271)
T KOG0173|consen 31 PKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRK 110 (271)
T ss_pred CcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcccCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHH
Q 028737 82 MKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDE 161 (204)
Q Consensus 82 ~~~~~la~~l~~~~~~~r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 161 (204)
+.+-..-++|.+.++.+.. -.++.+|++|+|++ |||||.+-|.|+....+ |.++|+|+..+.+.||.+|+|||+.||
T Consensus 111 ~rVv~A~~mlkQ~LFrYqG-~IgA~LiiGGvD~T-GpHLy~i~phGStd~~P-f~alGSGslaAmsvlEsr~k~dlt~ee 187 (271)
T KOG0173|consen 111 PRVVTALRMLKQHLFRYQG-HIGAALILGGVDPT-GPHLYSIHPHGSTDKLP-FTALGSGSLAAMSVLESRWKPDLTKEE 187 (271)
T ss_pred CceeeHHHHHHHHHHHhcC-cccceeEEccccCC-CCceEEEcCCCCcCccc-eeeeccchHHHHHHHHHhcCcccCHHH
Confidence 9999999999999866542 27999999999987 89999999999999986 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEEE
Q 028737 162 LFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKE 196 (204)
Q Consensus 162 a~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~ 196 (204)
|.+|+.+|+...+..|..+|.|+++|+|++.++..
T Consensus 188 a~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~ 222 (271)
T KOG0173|consen 188 AIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEY 222 (271)
T ss_pred HHHHHHHHHHhhhccccCCCCceeEEEEeCCCccc
Confidence 99999999999999999999999999999877654
No 38
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-37 Score=240.98 Aligned_cols=186 Identities=13% Similarity=0.134 Sum_probs=166.8
Q ss_pred cccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCC
Q 028737 3 ITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDM 82 (204)
Q Consensus 3 ~~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 82 (204)
..+.+++|+||||||||||+++++-+++ +|.....++|||.|++||+|+++|+.+|.+.+.+++|.++..|+.+++.++
T Consensus 29 KAven~~T~IGIk~kdGVVl~vEKli~S-kLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~pi 107 (254)
T KOG0184|consen 29 KAVENSGTCIGIKCKDGVVLAVEKLITS-KLYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPI 107 (254)
T ss_pred HHHhcCCcEEEEecCCeEEEEEeeeecc-cccccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCC
Confidence 3578999999999999999999999887 566678899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcc----cCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCC
Q 028737 83 KPETFASLVSALLYEKR----FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDME 158 (204)
Q Consensus 83 ~~~~la~~l~~~~~~~r----~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s 158 (204)
|...++..++++.+-.+ .|||||+.++++||. +||+||.+||||..+.++ .+|+|.|.|.+++.|||+--.+|+
T Consensus 108 P~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~~Y~-~aaiGKgrq~aKtElEKL~~~~mt 185 (254)
T KOG0184|consen 108 PGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSYGYK-GAAIGKGRQAAKTELEKLKIDEMT 185 (254)
T ss_pred chHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCcccee-eeeccchhHHHHHHHHhccccccc
Confidence 99999999999985433 589999999999995 599999999999999997 999999999999999999888999
Q ss_pred HHHHHHHHHHHHHHhHhcccccCCcEEEEEEcC
Q 028737 159 PDELFETVSQALLSSVDRDCLSGWGGHVYIVTP 191 (204)
Q Consensus 159 ~~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k 191 (204)
++|+++.+.++|..+.+......-.+|+.++..
T Consensus 186 ~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~ 218 (254)
T KOG0184|consen 186 CKELVKEAAKIIYKVHDENKDKEFEIEMGWVGE 218 (254)
T ss_pred HHHHHHHHHheeEeecccccCcceEEEEEEEEe
Confidence 999999999999888755432223567777764
No 39
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-38 Score=237.43 Aligned_cols=189 Identities=16% Similarity=0.183 Sum_probs=174.6
Q ss_pred ccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCC
Q 028737 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (204)
Q Consensus 4 ~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 83 (204)
.+.+|.+.||++-.||||||++++..+ .+....+.+|+++|.++|+|.+||+.+|++.+++..|..++.|...++++|+
T Consensus 28 Av~~G~~SvGi~A~nGvVlatekk~~s-~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~p 106 (233)
T KOG0181|consen 28 AVVNGQTSVGIKAANGVVLATEKKDVS-PLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIP 106 (233)
T ss_pred HHhCCCCceeeeecCceEEEeccCCCC-ccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCC
Confidence 357899999999999999999997654 6778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc----cCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCH
Q 028737 84 PETFASLVSALLYEKR----FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP 159 (204)
Q Consensus 84 ~~~la~~l~~~~~~~r----~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 159 (204)
+..+.+.++..+++.+ .||||+++|++|||.. +|.||++||||+++.|+ ++|+|.+...++.+||++|++++.+
T Consensus 107 t~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~-~p~LyQvdPSGsyf~wk-atA~Gkn~v~aktFlEkR~~edlel 184 (233)
T KOG0181|consen 107 TTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPLLYQVDPSGSYFAWK-ATAMGKNYVNAKTFLEKRYNEDLEL 184 (233)
T ss_pred HHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCC-ceeEEEECCccceeehh-hhhhccCcchHHHHHHHHhcccccc
Confidence 9999999999986543 6899999999999974 99999999999999997 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEEE
Q 028737 160 DELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKE 196 (204)
Q Consensus 160 ~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~ 196 (204)
++++..++..|++..+-. .+.+++||.++..++.+.
T Consensus 185 dd~ihtailtlkE~fege-~~~~nieigv~~~~~F~~ 220 (233)
T KOG0181|consen 185 DDAIHTAILTLKESFEGE-MTAKNIEIGVCGENGFRR 220 (233)
T ss_pred chHHHHHHHHHHHHhccc-cccCceEEEEecCCceee
Confidence 999999999999999877 456899999999777653
No 40
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-37 Score=241.48 Aligned_cols=192 Identities=20% Similarity=0.264 Sum_probs=183.8
Q ss_pred ccccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCC
Q 028737 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMK 83 (204)
Q Consensus 4 ~~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 83 (204)
.-.||||++|++++.|||+|+|+|.+.|+.+.+.+++||..||++++-.++|-.+|++.+.+.+..+|+.|++++++.|+
T Consensus 67 ~~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriS 146 (285)
T KOG0175|consen 67 KFAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERIS 146 (285)
T ss_pred eecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCccee
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHHHH
Q 028737 84 PETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELF 163 (204)
Q Consensus 84 ~~~la~~l~~~~~~~r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~ 163 (204)
|...+++|++++|++|..-+.+..+++|||+. ||.||.+|..|+..+-+ -.++|+|+.+|+.+|+..|++|||.+||.
T Consensus 147 VsaASKllsN~~y~YkGmGLsmGtMi~G~Dk~-GP~lyYVDseG~Rl~G~-~FSVGSGs~yAYGVLDsgYr~dls~eEA~ 224 (285)
T KOG0175|consen 147 VSAASKLLSNMVYQYKGMGLSMGTMIAGWDKK-GPGLYYVDSEGTRLSGD-LFSVGSGSTYAYGVLDSGYRYDLSDEEAY 224 (285)
T ss_pred hHHHHHHHHHHHhhccCcchhheeeEeeccCC-CCceEEEcCCCCEecCc-eEeecCCCceeEEeeccCCCCCCCHHHHH
Confidence 99999999999999985567889999999985 89999999999999875 88999999999999999999999999999
Q ss_pred HHHHHHHHHhHhcccccCCcEEEEEEcCCcEEEE
Q 028737 164 ETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKER 197 (204)
Q Consensus 164 ~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~~ 197 (204)
+|++.|+..+..||..+|+-+.++.|+.||+...
T Consensus 225 ~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v 258 (285)
T KOG0175|consen 225 DLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKV 258 (285)
T ss_pred HHHHHHHHHHHhcccccCceEEEEEECCccceec
Confidence 9999999999999999999999999999998753
No 41
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-35 Score=231.35 Aligned_cols=191 Identities=19% Similarity=0.257 Sum_probs=178.9
Q ss_pred ccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhh-hhcCCCCCH
Q 028737 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQ-LREERDMKP 84 (204)
Q Consensus 6 ~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~-~~~~~~~~~ 84 (204)
-+||++||+|++|||+||+|+..++|++....+.+++|+|+||+.+++||..+|+|.+.+.+......-. +..++.+.|
T Consensus 39 vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~P 118 (256)
T KOG0185|consen 39 VTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGP 118 (256)
T ss_pred eccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccCh
Confidence 4799999999999999999999999999999999999999999999999999999999999988776533 556789999
Q ss_pred HHHHHHHHHHHHhcc--cCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCC---CCCCH
Q 028737 85 ETFASLVSALLYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFK---PDMEP 159 (204)
Q Consensus 85 ~~la~~l~~~~~~~r--~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~---~~~s~ 159 (204)
+.++++|...+|.+| +.|+...++|||+|.++.|+|-.+|-.|..++.+ ..|+|.|++.+.++|++.|. ++++.
T Consensus 119 k~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~-~vATGfg~hLa~P~lR~~~~~k~~~~s~ 197 (256)
T KOG0185|consen 119 KAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESP-VVATGFGAHLALPLLRDEWEKKGEDLSR 197 (256)
T ss_pred HHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCc-hhhhhhHHHhhhHHHHHhhhccchhhHH
Confidence 999999999999987 8899999999999988899999999999999885 99999999999999999997 57999
Q ss_pred HHHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEEEE
Q 028737 160 DELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKER 197 (204)
Q Consensus 160 ~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~~ 197 (204)
+||.+++.+|++....||+.+..+++|.+|+++|+...
T Consensus 198 eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~ 235 (256)
T KOG0185|consen 198 EEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTIS 235 (256)
T ss_pred HHHHHHHHHHHHHHhccccccccceEEEEEcccceEec
Confidence 99999999999999999999999999999999998753
No 42
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-35 Score=229.73 Aligned_cols=185 Identities=22% Similarity=0.230 Sum_probs=170.1
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCH
Q 028737 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (204)
Q Consensus 5 ~~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (204)
+..|+++||+|.++..||++-+|..+ -+++.++|||+||+|++++++|+++|++.+.++++.+|..+++.+++++++
T Consensus 29 vkqGsatVGLks~thaVLvAl~r~~s---eLss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv 105 (264)
T KOG0863|consen 29 VKQGSATVGLKSRTHAVLVALKRAQS---ELSSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLPV 105 (264)
T ss_pred HhcccceEeecccceEEEeeeccchh---HHHHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCcccH
Confidence 56899999999999999999998754 346789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--c--cCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCC--CCCC
Q 028737 85 ETFASLVSALLYEK--R--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFK--PDME 158 (204)
Q Consensus 85 ~~la~~l~~~~~~~--r--~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~s 158 (204)
..+...|+..++.+ + .|||||.+|++|||+. ||+||+++|+|++.+++ .++||+.+|.++++||+... ++++
T Consensus 106 ~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~-G~hl~e~~Psg~v~e~~-g~sIGsRSQsARTyLEr~~e~f~~~~ 183 (264)
T KOG0863|consen 106 LRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDES-GPHLYEFCPSGNVFECK-GMSIGSRSQSARTYLERNLEEFEDSS 183 (264)
T ss_pred HHHHHHHHHHHhhhhhhhCCccccceEEEEeecCC-CceeEEEcCCccEEEEe-eeecccchhhHHHHHHHHHHHHhcCC
Confidence 99999999988653 3 5899999999999976 89999999999999997 99999999999999999874 7899
Q ss_pred HHHHHHHHHHHHHHhHhcc-cccCCcEEEEEEcCCcE
Q 028737 159 PDELFETVSQALLSSVDRD-CLSGWGGHVYIVTPTEI 194 (204)
Q Consensus 159 ~~ea~~l~~~~l~~~~~~d-~~~~~~v~i~~i~k~g~ 194 (204)
.+|.+..++.||+.++..| ..++.|++|+|+.||..
T Consensus 184 ~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~p 220 (264)
T KOG0863|consen 184 PEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEP 220 (264)
T ss_pred HHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCc
Confidence 9999999999999999754 67888999999999864
No 43
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=2.4e-34 Score=221.97 Aligned_cols=167 Identities=16% Similarity=0.242 Sum_probs=146.8
Q ss_pred CceEEEEEeCCEEEEeEecccccCceeeecccCceEEc-cCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 028737 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKI-HDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPET 86 (204)
Q Consensus 8 g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (204)
|+|+|||+++||||||+|+|.+.|.++.+++.+||++| +++++|+.||..+|++.+.+.++.+++.|+. + + .+.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~--~-~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--N--L-LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--c--c-HHH
Confidence 68999999999999999999999999999999999999 9999999999999999999999999999873 2 1 466
Q ss_pred HHHHHHHHHHhccc-CccceeeEEEEEcCCCCcEEEEEcCCCceeecc-ceeEeecchhhhHHHHhccCC-CCCCHHHHH
Q 028737 87 FASLVSALLYEKRF-GPYFCQPVIAGLSDEDKPFICTMDSIGAKELAK-DFVVAGTAGESLYGACEAMFK-PDMEPDELF 163 (204)
Q Consensus 87 la~~l~~~~~~~r~-~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~-~~~a~G~g~~~~~~~Le~~~~-~~~s~~ea~ 163 (204)
+++.+..+ ...++ +|+.+++|++ | .|+||.+||.|+..+.+ +++|+|+|+.+++++|++.|+ ++| ||+
T Consensus 76 ~a~l~~~l-~~~~~~~~l~~~~lv~--d---~~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA~ 146 (172)
T PRK05456 76 AVELAKDW-RTDRYLRRLEAMLIVA--D---KEHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SAE 146 (172)
T ss_pred HHHHHHHH-HhccCCCccEEEEEEE--c---CCcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CHH
Confidence 66665443 22343 5788999994 4 37999999999996651 499999999999999999999 999 999
Q ss_pred HHHHHHHHHhHhcccccCCcEEEEE
Q 028737 164 ETVSQALLSSVDRDCLSGWGGHVYI 188 (204)
Q Consensus 164 ~l~~~~l~~~~~~d~~~~~~v~i~~ 188 (204)
+++.+|++.+.+||..++++++|-.
T Consensus 147 ~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 147 EIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred HHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 9999999999999999999988754
No 44
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-34 Score=221.47 Aligned_cols=191 Identities=21% Similarity=0.262 Sum_probs=178.2
Q ss_pred cCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 028737 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPET 86 (204)
Q Consensus 7 ~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (204)
.|-|.||++++|++|+++.+++.. +++.++++.++|+|.++|+|+++|..+|++..++++|.++.++++.+|.+||++.
T Consensus 35 ~gltsVavrgkDcavvvsqKkvpD-KLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~Di 113 (246)
T KOG0182|consen 35 AGLTSVAVRGKDCAVVVTQKKVPD-KLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYEMPCDI 113 (246)
T ss_pred CCCceEEEcCCceEEEEecccCcc-cccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHH
Confidence 388999999999999999999876 6778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH--Hhcc--cCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCC--CCHH
Q 028737 87 FASLVSALL--YEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPD--MEPD 160 (204)
Q Consensus 87 la~~l~~~~--~~~r--~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~--~s~~ 160 (204)
||++++++- |+++ +||+||.+++.|+|++.||.+|..||.|.+..++ +.|.|.....+.++||+.++++ ++.+
T Consensus 114 L~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~k-AtaaG~Kq~e~tsfLEKk~Kk~~~~t~~ 192 (246)
T KOG0182|consen 114 LAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFK-ATAAGVKQQEATSFLEKKYKKDIDLTFE 192 (246)
T ss_pred HHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccce-eeecccchhhHHHHHHHhhccCccchHH
Confidence 999999985 5555 8999999999999998899999999999999997 9999999999999999999987 6799
Q ss_pred HHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEEEEEec
Q 028737 161 ELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILK 200 (204)
Q Consensus 161 ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~~~~~ 200 (204)
|++++++.||..++..|..+ ..+||.+++++..+++.|.
T Consensus 193 e~ve~ai~al~~sl~~Dfk~-se~EVgvv~~~~p~f~~Ls 231 (246)
T KOG0182|consen 193 ETVETAISALQSSLGIDFKS-SELEVGVVTVDNPEFRILS 231 (246)
T ss_pred HHHHHHHHHHHHHHhcccCC-cceEEEEEEcCCcceeecc
Confidence 99999999999999999654 5999999999998888775
No 45
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=100.00 E-value=3.3e-34 Score=219.79 Aligned_cols=166 Identities=16% Similarity=0.215 Sum_probs=143.8
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeecccCceEEccC-cEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 028737 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHD-RLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (204)
Q Consensus 9 ~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (204)
+|+|||+++||||||+|+|.+.|.++.+++.+||++|+| |++|+++|..+|++.+.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 699999999999999999999999999999999999999 999999999999999999999999999887664 44
Q ss_pred HHHHHHHHHhcccCccc-eeeEEEEEcCCCCcEEEEEcCCCceeecc-ceeEeecchhhhHHHHhccCCCC-CCHHHHHH
Q 028737 88 ASLVSALLYEKRFGPYF-CQPVIAGLSDEDKPFICTMDSIGAKELAK-DFVVAGTAGESLYGACEAMFKPD-MEPDELFE 164 (204)
Q Consensus 88 a~~l~~~~~~~r~~P~~-~~~lv~G~d~~~~p~Ly~id~~G~~~~~~-~~~a~G~g~~~~~~~Le~~~~~~-~s~~ea~~ 164 (204)
++.+..+ ...+++|+. +.++++ | .++||.+||.|+..+.+ ++.|+|+|+.+++++||..|+++ || +.+
T Consensus 76 a~l~~~l-~~~~~~~~l~a~~iv~--~---~~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~~~ 146 (171)
T cd01913 76 VELAKDW-RTDRYLRRLEAMLIVA--D---KEHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS---AEE 146 (171)
T ss_pred HHHHHHH-HhccCcCceEEEEEEe--C---CCcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---HHH
Confidence 5554433 233555665 555554 3 24999999999999873 49999999999999999999995 99 669
Q ss_pred HHHHHHHHhHhcccccCCcEEEEE
Q 028737 165 TVSQALLSSVDRDCLSGWGGHVYI 188 (204)
Q Consensus 165 l~~~~l~~~~~~d~~~~~~v~i~~ 188 (204)
++.+|++.+++||+.++++++|-.
T Consensus 147 la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 147 IARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred HHHHHHHHHHhhCcccCCCEEEEe
Confidence 999999999999999999988754
No 46
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=100.00 E-value=2.4e-33 Score=215.01 Aligned_cols=166 Identities=16% Similarity=0.218 Sum_probs=142.9
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeecccCceEEc-cCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 028737 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKI-HDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (204)
Q Consensus 9 ~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (204)
+|+||++++||||||+|+|.+.|.++.+++.+||++| +++++|+++|..+|++.+.++++.+++.|+.+. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6999999999999999999999999999999999999 599999999999999999999999999987632 4667
Q ss_pred HHHHHHHHHhcccCcc-ceeeEEEEEcCCCCcEEEEEcCCCceeec-cceeEeecchhhhHHHHhccC-CCCCCHHHHHH
Q 028737 88 ASLVSALLYEKRFGPY-FCQPVIAGLSDEDKPFICTMDSIGAKELA-KDFVVAGTAGESLYGACEAMF-KPDMEPDELFE 164 (204)
Q Consensus 88 a~~l~~~~~~~r~~P~-~~~~lv~G~d~~~~p~Ly~id~~G~~~~~-~~~~a~G~g~~~~~~~Le~~~-~~~~s~~ea~~ 164 (204)
++.++++ ..++++|+ .+.++++ | .++||.+||.|+..+. ++++++|+|+.+++++||..| +++|+ |++
T Consensus 76 a~l~~~~-~~~~~~~~l~a~~iv~--~---~~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a~~ 146 (171)
T TIGR03692 76 VELAKDW-RTDRYLRRLEAMLIVA--D---KETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---AEE 146 (171)
T ss_pred HHHHHHH-hhcccccccEEEEEEE--c---CCCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---HHH
Confidence 7777663 22333344 3666665 3 2499999999999985 249999999999999999999 57777 999
Q ss_pred HHHHHHHHhHhcccccCCcEEEEE
Q 028737 165 TVSQALLSSVDRDCLSGWGGHVYI 188 (204)
Q Consensus 165 l~~~~l~~~~~~d~~~~~~v~i~~ 188 (204)
++.+|++.+++||..++++++|-.
T Consensus 147 la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 147 IAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred HHHHHHHHHHhhCccCCCCEEEEe
Confidence 999999999999999999988754
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.98 E-value=1.9e-30 Score=197.04 Aligned_cols=162 Identities=29% Similarity=0.373 Sum_probs=153.1
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 028737 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (204)
Q Consensus 9 ~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (204)
+|+||++++||||+|+|++.+.+......+.+|+++++++++++++|..+|++.+.++++.+++.|+..++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999998777678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc-cCccceeeEEEEEcCCCCcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHHHHHHHH
Q 028737 89 SLVSALLYEKR-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVS 167 (204)
Q Consensus 89 ~~l~~~~~~~r-~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~ 167 (204)
+.+++.++..+ .+|+++++|++|+|+ ++|+||.+||+|++.+.+.++++|+++..+.++|++.|+++++.+|+++++.
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELAL 159 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999998866 489999999999997 6899999999999998823999999999999999999999999999999999
Q ss_pred HHHH
Q 028737 168 QALL 171 (204)
Q Consensus 168 ~~l~ 171 (204)
++|+
T Consensus 160 ~~l~ 163 (164)
T cd01901 160 KALK 163 (164)
T ss_pred HHHh
Confidence 9985
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.1e-18 Score=126.57 Aligned_cols=172 Identities=16% Similarity=0.221 Sum_probs=136.8
Q ss_pred ccCceEEEEEeCCEEEEeEecccccCceeeecccCceEEccC-cEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCH
Q 028737 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHD-RLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (204)
Q Consensus 6 ~~g~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (204)
-++||+++++.++-|+||+|.+++.|..++..+.+|+.+|.. .+..+++|.++|+..|.+++..+++.|+-+.-+ .+
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~r--aa 79 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFR--AA 79 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcHHH--HH
Confidence 478999999999999999999999999999999999988865 799999999999999999999999988633222 45
Q ss_pred HHHHHHHHHHHHhcccCccceeeEEEEEcCCCCcEEEEEcCCCceee-ccceeEeecchhhhHHHHhccCC-CCCCHHHH
Q 028737 85 ETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKEL-AKDFVVAGTAGESLYGACEAMFK-PDMEPDEL 162 (204)
Q Consensus 85 ~~la~~l~~~~~~~r~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~-~~~~~a~G~g~~~~~~~Le~~~~-~~~s~~ea 162 (204)
..+++.++.-.|-++ +.+-+||+ |+ -.+|-+...|-..+ ..+.+|||||..++++.....+. +++| |
T Consensus 80 velaKdwr~Dk~lr~---LEAmllVa--d~---~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls---A 148 (178)
T COG5405 80 VELAKDWRTDKYLRK---LEAMLLVA--DK---THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS---A 148 (178)
T ss_pred HHHHHhhhhhhHHHH---HhhheeEe--CC---CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC---H
Confidence 566666665444444 56777776 54 46777877887554 33489999999999998888775 4677 7
Q ss_pred HHHHHHHHHHhHhcccccCCcEEEEEEc
Q 028737 163 FETVSQALLSSVDRDCLSGWGGHVYIVT 190 (204)
Q Consensus 163 ~~l~~~~l~~~~~~d~~~~~~v~i~~i~ 190 (204)
.+++.++|+.+.+-+.+++.|+.|-.+.
T Consensus 149 ~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 149 REIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred HHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 7789999988887777777777665543
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.6e-12 Score=100.31 Aligned_cols=188 Identities=14% Similarity=0.100 Sum_probs=147.9
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeecccCceEEc---cCc-EEEeeccchhHHHHHHHHHHHHHHHhhh-hcCCCCC
Q 028737 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKI---HDR-LFIGLSGLATDSQTLYQRLVFRHKLYQL-REERDMK 83 (204)
Q Consensus 9 ~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i---~~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~~~ 83 (204)
+-|||++.+.|.|+++|+|.+.|-- .-...+|+|.. +|+ ++++.+|..+-.|.+++.+.+..+.-+. ....-++
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD-~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~s 80 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVD-YISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPS 80 (255)
T ss_pred ceEEEEEeccceEEecccccccCch-HHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchh
Confidence 5689999999999999999887632 22567787665 345 6778999999999999999887752211 1233456
Q ss_pred HHHHHHHHHHHHHh---c-c------cCccceeeEEEEEcCCCCcEEEEEcCCCceeec---cceeEeecchhhhHHHHh
Q 028737 84 PETFASLVSALLYE---K-R------FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELA---KDFVVAGTAGESLYGACE 150 (204)
Q Consensus 84 ~~~la~~l~~~~~~---~-r------~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~~~---~~~~a~G~g~~~~~~~Le 150 (204)
+-+.+..+++..-+ + + ..-|.|++|+||.-..+-|+||.|-|.|++.+. .+|.-+|+ ..+-+++|+
T Consensus 81 m~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPild 159 (255)
T COG3484 81 MYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILD 159 (255)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhhh
Confidence 66667777665422 1 1 235899999999976555999999999998852 34889998 458889999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEEEEE
Q 028737 151 AMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERI 198 (204)
Q Consensus 151 ~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~~~ 198 (204)
+.+.-+++++|+.++++-.+...++.+.+.|-++++.++.+|....++
T Consensus 160 R~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~~v~~ 207 (255)
T COG3484 160 RTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSFSVRH 207 (255)
T ss_pred hhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccceeeee
Confidence 999999999999999999999999999999999999999999865443
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=97.43 E-value=0.02 Score=44.61 Aligned_cols=152 Identities=18% Similarity=0.220 Sum_probs=93.7
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 028737 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (204)
Q Consensus 9 ~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (204)
+.+||..+++|.|+|+|+|. ++|-|.......|.+.| | .|.=-+=+.|.
T Consensus 2 SLII~y~GknGaViaGDkR~----------------------I~F~G~~~~re~LEeeL------Y---sG~IktdeEL~ 50 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRN----------------------IAFRGDEEKREKLEEEL------Y---SGKIKTDEELL 50 (194)
T ss_pred eEEEEEecCCCcEEecccee----------------------eeecCCHHHHHHHHHHH------h---CCccCCHHHHH
Confidence 56899999999999999972 23567666666655543 2 24333556666
Q ss_pred HHHHHH---HH--hcc--cCccceeeEEEEEcCC-----CCcEEEEE-------cCCCceeecc------ceeEeecc--
Q 028737 89 SLVSAL---LY--EKR--FGPYFCQPVIAGLSDE-----DKPFICTM-------DSIGAKELAK------DFVVAGTA-- 141 (204)
Q Consensus 89 ~~l~~~---~~--~~r--~~P~~~~~lv~G~d~~-----~~p~Ly~i-------d~~G~~~~~~------~~~a~G~g-- 141 (204)
+...++ ++ ..| .+-.+- +|+|-+-.- ..-++|-. |-.|+-..-. .....|..
T Consensus 51 kkA~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~skRRRiY~t~g~~~Ivei~~~~i~~~~~g~~sgiIVfGNk~~ 129 (194)
T PF09894_consen 51 KKAEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDSKRRRIYATKGKYAIVEIENDEITNKSRGEGSGIIVFGNKFT 129 (194)
T ss_pred HHHHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccceeeEEEecCCCEEEEEecCCeEEEEecCCceeEEEECCHHH
Confidence 655543 11 011 112222 444433211 12355532 2223222111 02233322
Q ss_pred hhhhHHHHhccCCCCCCHHHHHHHHHHHHHHhHhcccccCCcEEEEEEcCC
Q 028737 142 GESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPT 192 (204)
Q Consensus 142 ~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~ 192 (204)
.+.+...|.+.|++.|+++++..+..++|+.+.....+....+++...++.
T Consensus 130 K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 130 KEIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 267888999999999999999999999999998888777789998887754
No 51
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.50 E-value=0.41 Score=38.80 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=96.3
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeecccCceEEccCcEEEeeccchhHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 028737 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (204)
Q Consensus 9 ~t~vgi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (204)
+.+|+..+++|.|+|.|+|. +++-|.-.|...+.+.+ | .|.--+-+.|+
T Consensus 2 tLviay~gknGaviaGDrR~----------------------i~frgdee~re~lEekL------Y---sGeIkteEEL~ 50 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE----------------------ITFRGDEEDREKLEEKL------Y---SGEIKTEEELA 50 (293)
T ss_pred eEEEEEecCCCcEEeccceE----------------------EEEecChhHHHHHHHHh------h---cCccccHHHHH
Confidence 56899999999999999972 23557777777666643 2 35444667777
Q ss_pred HHHHHHH----Hh-cc--cCccceeeEEEEEcCCC-----CcEEEEE-------cCCCceeec------cceeEeecc--
Q 028737 89 SLVSALL----YE-KR--FGPYFCQPVIAGLSDED-----KPFICTM-------DSIGAKELA------KDFVVAGTA-- 141 (204)
Q Consensus 89 ~~l~~~~----~~-~r--~~P~~~~~lv~G~d~~~-----~p~Ly~i-------d~~G~~~~~------~~~~a~G~g-- 141 (204)
++..++= .+ .| .+-..-+++++-+..-+ .-++|.. +-.|+-... ....+.|..
T Consensus 51 r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~~ 130 (293)
T COG4079 51 RKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKFT 130 (293)
T ss_pred HHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHHH
Confidence 7766541 01 11 22233445554443321 1244432 222221110 113333422
Q ss_pred hhhhHHHHhccCCCCCCHHHHHHHHHHHHHHhHhcccccCCcEEEEEEcCC
Q 028737 142 GESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPT 192 (204)
Q Consensus 142 ~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~ 192 (204)
.+.+..+|.+.|.+.++++++..++..+|..+...-.+.+..++++.++++
T Consensus 131 Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~ 181 (293)
T COG4079 131 KEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN 181 (293)
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence 256778999999999999999999999999998777777788999988764
No 52
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=90.86 E-value=0.26 Score=36.17 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=39.4
Q ss_pred EEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHHHHH
Q 028737 121 CTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFE 164 (204)
Q Consensus 121 y~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~ 164 (204)
..+|.+|-....+ |-..|.|+..+-+-+-..|-.++++|||.+
T Consensus 71 Ikvd~~g~I~dak-FKTFGCGSAIASSS~aTewvkgkt~dea~k 113 (157)
T KOG3361|consen 71 IKVDDSGVIEDAK-FKTFGCGSAIASSSLATEWVKGKTLDEALK 113 (157)
T ss_pred EEECCCCcEEEee-eeecccchHhhhhHHHHHHHccccHHHHHh
Confidence 4678899999997 999999999999999999999999999874
No 53
>PF13983 YsaB: YsaB-like lipoprotein
Probab=62.42 E-value=30 Score=22.48 Aligned_cols=60 Identities=17% Similarity=0.301 Sum_probs=40.0
Q ss_pred HHHhhhhcCCCCCHHHHHHHHHHHHHhcc--------cCccceeeEEEEEcCCCCcEEEEEcCCCcee
Q 028737 71 HKLYQLREERDMKPETFASLVSALLYEKR--------FGPYFCQPVIAGLSDEDKPFICTMDSIGAKE 130 (204)
Q Consensus 71 ~~~~~~~~~~~~~~~~la~~l~~~~~~~r--------~~P~~~~~lv~G~d~~~~p~Ly~id~~G~~~ 130 (204)
++.-+....+.+..+.+++.=+...|... +..|.-|.=+-|+-.....+++++||.|-+.
T Consensus 5 AQk~kvsp~~sL~ME~lCk~~AA~RYnt~~q~idv~~FeqfQgSYEm~G~T~r~E~FvCSFD~dGqFL 72 (77)
T PF13983_consen 5 AQKAKVSPQRSLNMEQLCKDQAAHRYNTGAQKIDVTGFEQFQGSYEMRGYTARKEGFVCSFDADGQFL 72 (77)
T ss_pred hhhcccCcccccCHHHHHHHHHHHhhcCCceeEeecchhhhccceEeecccccccceEEeECCCCcEE
Confidence 44445566677888888888777777531 2345555555565443467999999999775
No 54
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=59.07 E-value=48 Score=24.79 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEEEEE
Q 028737 154 KPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERI 198 (204)
Q Consensus 154 ~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~~~ 198 (204)
.+.+|+++|.+++..++..+-+. +.++.|.+++..|-..-.
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~----g~~VtvaVVD~~G~~~a~ 45 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL----GVPVTVAVVDAGGHLVAL 45 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh----CCceEEEEECCCCCEEEE
Confidence 46799999999999998887653 689999999999865443
No 55
>PRK09732 hypothetical protein; Provisional
Probab=58.67 E-value=48 Score=24.50 Aligned_cols=41 Identities=2% Similarity=-0.012 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEEEEEe
Q 028737 155 PDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERIL 199 (204)
Q Consensus 155 ~~~s~~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~~~~ 199 (204)
+.+|++.|.+++..++..+.+. +.++.|+|++..|...-..
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~l~a~~ 45 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGHLLALS 45 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCCEEEEE
Confidence 4589999999999999988764 4689999999999765444
No 56
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=54.40 E-value=27 Score=25.36 Aligned_cols=40 Identities=8% Similarity=0.052 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEEEEEe
Q 028737 156 DMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERIL 199 (204)
Q Consensus 156 ~~s~~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~~~~ 199 (204)
.+|.++|.+++..+++.+.++. .++-|+|++..|......
T Consensus 2 ~l~~~~A~~l~~~a~~~a~~~g----~~v~iaVvd~~G~~~~~~ 41 (132)
T PF03928_consen 2 SLTLEDAWKLGDAAVEEARERG----LPVSIAVVDAGGHLLAFA 41 (132)
T ss_dssp EE-HHHHHHHHHHHHHHHHHTT-------EEEEEETTS-EEEEE
T ss_pred CcCHHHHHHHHHHHHHHHHHhC----CCeEEEEEECCCCEEEEE
Confidence 4789999999999999998754 468899999999765543
No 57
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=53.20 E-value=27 Score=27.49 Aligned_cols=41 Identities=17% Similarity=0.003 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEEEEEecc
Q 028737 161 ELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKG 201 (204)
Q Consensus 161 ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~~~~~~ 201 (204)
|++...++.|...+..|......+++.||+-+|.-+...|+
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf 62 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPF 62 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEech
Confidence 47777888888888899888889999999999866555554
No 58
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.47 E-value=30 Score=21.41 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=27.6
Q ss_pred hhhHHHHhccCCCCCCHHHHHHHHHHHHHHhHhccc
Q 028737 143 ESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDC 178 (204)
Q Consensus 143 ~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~ 178 (204)
+.+..-+.+...++||.-||+.++.+.|+.-...+.
T Consensus 14 Q~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~hk~~~ 49 (60)
T COG3140 14 QKAVERIQELMAEGMSSGEAIALVAQELRENHKGEN 49 (60)
T ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHHhcccc
Confidence 344455556666799999999999999998876653
No 59
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=36.18 E-value=58 Score=26.97 Aligned_cols=53 Identities=23% Similarity=0.208 Sum_probs=33.0
Q ss_pred EEEEcCCCCcEEEEEcCCCceee--ccceeEeecchhhhHHHHhccCCCCCCHHHHHHHHHHH
Q 028737 109 IAGLSDEDKPFICTMDSIGAKEL--AKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQA 169 (204)
Q Consensus 109 v~G~d~~~~p~Ly~id~~G~~~~--~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~ 169 (204)
++|+| -.+..+|..|.... .++-||.|.|+ |.....+.. +++++|.-+++.++
T Consensus 104 IGGQD----~K~I~~~~~G~v~~f~MNdkCAAGTG~-FLe~~A~~L---~i~leel~~~a~~~ 158 (262)
T TIGR02261 104 IGALH----GRAIRMDERGKVEAYKMTSQCASGSGQ-FLENIARYL---GIAQDEIGSLSQQA 158 (262)
T ss_pred eCCCc----eEEEEEcCCCcEeeEEecCcccccccH-HHHHHHHHh---CCCHHHHHHHHhcC
Confidence 67776 35777898897653 34577889887 444444332 56777655554443
No 60
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=36.10 E-value=14 Score=21.81 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=20.7
Q ss_pred EeecchhhhHHHHhccC-CCCCCHHHHHHHHHH
Q 028737 137 VAGTAGESLYGACEAMF-KPDMEPDELFETVSQ 168 (204)
Q Consensus 137 a~G~g~~~~~~~Le~~~-~~~~s~~ea~~l~~~ 168 (204)
+.|.....+...+++.. .++++.++.++.+++
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIKQALK 44 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Confidence 34666777777777666 788888887666554
No 61
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=35.47 E-value=66 Score=20.64 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 028737 65 QRLVFRHKLYQLREERDMKPETFASLVSA 93 (204)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~la~~l~~ 93 (204)
+.++...+.+....|+.|+.+.+|..+.-
T Consensus 4 ~~i~~a~~~L~~~lgr~Pt~eEiA~~lgi 32 (78)
T PF04539_consen 4 RKIERARRELEQELGREPTDEEIAEELGI 32 (78)
T ss_dssp HHHHHHHHHHHHHHSS--BHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHcc
Confidence 34444445556678999999999997763
No 62
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=34.83 E-value=42 Score=28.09 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=39.0
Q ss_pred EEEEcCCCCcEE-EEEcCCCceeeccceeEeecc-hhhhHHHHhccCC-CCCCHHHHHHHHHHHH
Q 028737 109 IAGLSDEDKPFI-CTMDSIGAKELAKDFVVAGTA-GESLYGACEAMFK-PDMEPDELFETVSQAL 170 (204)
Q Consensus 109 v~G~d~~~~p~L-y~id~~G~~~~~~~~~a~G~g-~~~~~~~Le~~~~-~~~s~~ea~~l~~~~l 170 (204)
+.|.||..|-.| ......|-+.+. ..|.. -.....-|-+.|. +++|+|+|++|+..=-
T Consensus 77 ~LG~DP~tG~eI~~k~GryGPYVq~----~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLsLPR 137 (298)
T COG1754 77 VLGIDPETGEEIYLKNGRYGPYVQE----QLGDPKPKPKRASLPKGWKPETITLEKALKLLSLPR 137 (298)
T ss_pred ccccCCCCCceeEEeccCCCceeee----ecCCCCCCcccccCCCCCChhhCcHHHHHHHHcCch
Confidence 348997545444 466777755432 45766 5566777888887 4799999988875443
No 63
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=34.73 E-value=89 Score=20.91 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEEEEEecc
Q 028737 155 PDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKG 201 (204)
Q Consensus 155 ~~~s~~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~~~~~~ 201 (204)
..+|.+||.+.++.+|..... ++.-.+++++.+|.. ..-|.
T Consensus 33 g~ls~eea~~~a~~~l~~~r~-----~~~gY~fi~d~~g~~-l~hp~ 73 (95)
T PF08269_consen 33 GKLSEEEAQQQAREALRALRY-----GGDGYFFIYDMDGVV-LAHPS 73 (95)
T ss_dssp T-----TTHHHHHHHHHH--S-----BTTB--EEE-TTSBE-EEESS
T ss_pred CCccHHHHHHHHHHHHhcccc-----CCCCeEEEEeCCCeE-EEcCC
Confidence 459999999999999876643 234478888999975 34444
No 64
>COG4302 EutC Ethanolamine ammonia-lyase, small subunit [Amino acid transport and metabolism]
Probab=33.84 E-value=2.2e+02 Score=23.53 Aligned_cols=116 Identities=15% Similarity=0.119 Sum_probs=74.7
Q ss_pred EEeeccchhHH-----HHHHHHHHHHHHHhhhhcCCCCCHH----HHHHHHHHHHHhcccCccceeeEEEEEcCCCCcEE
Q 028737 50 FIGLSGLATDS-----QTLYQRLVFRHKLYQLREERDMKPE----TFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFI 120 (204)
Q Consensus 50 ~~~~sG~~~D~-----~~l~~~~~~~~~~~~~~~~~~~~~~----~la~~l~~~~~~~r~~P~~~~~lv~G~d~~~~p~L 120 (204)
++..-|+.+++ ..++-.+......+.++.+.++-++ .++..+++++- --+.+|+.| + .|-|
T Consensus 163 ivVaDGLSa~AI~an~~~il~~l~eglk~~G~svgt~~fVk~gRVa~aD~IgE~Lg------AkvviiLIG---E-RPGL 232 (294)
T COG4302 163 IVVADGLSALAITANYEPILPPLMEGLKAAGLSVGTPFFVKYGRVAVADQIGEILG------AKVVIILIG---E-RPGL 232 (294)
T ss_pred EEecCcccHHHHHhhHHHHHHHHHHHHHhcCcccCChhheeecchhhHHHHHHHhC------CcEEEEEec---c-CCCC
Confidence 33455666554 3344455555566666666655332 34555555431 125666666 2 6888
Q ss_pred EEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHHHHHHHHHHHHHhHhccc
Q 028737 121 CTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDC 178 (204)
Q Consensus 121 y~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~ 178 (204)
-.-|+-|.|+.|.+ -+|. -+.-++.+..-...+...-||-..+...++.+.++..
T Consensus 233 ~t~eSls~Y~tY~p--rVg~-~eA~Rt~ISNIh~~G~p~veAa~~i~~li~~ml~~k~ 287 (294)
T COG4302 233 STPESLSLYFTYAP--RVGL-PEADRTCISNIHQGGTPPVEAAAVIVYLIKEMLERKA 287 (294)
T ss_pred CCcccceeeEEecC--ccCC-chhhhHHHhccccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 88888888876643 4555 4455666666677889999999988899999998874
No 65
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=31.47 E-value=86 Score=22.29 Aligned_cols=44 Identities=16% Similarity=0.078 Sum_probs=28.1
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhcC---------C-CCCHHHHHHHHHHHHHh
Q 028737 54 SGLATDSQTLYQRLVFRHKLYQLREE---------R-DMKPETFASLVSALLYE 97 (204)
Q Consensus 54 sG~~~D~~~l~~~~~~~~~~~~~~~~---------~-~~~~~~la~~l~~~~~~ 97 (204)
.|..-|+..+.+.++.....+...+= . .+|++.+|.+|.+.+..
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~ 96 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKE 96 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHH
Confidence 46777999998888876554442211 1 27899999999887743
No 66
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=31.00 E-value=70 Score=17.02 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=16.0
Q ss_pred eeEEEEEcCCCCcEEEEEcCCCc
Q 028737 106 QPVIAGLSDEDKPFICTMDSIGA 128 (204)
Q Consensus 106 ~~lv~G~d~~~~p~Ly~id~~G~ 128 (204)
+..+-|.-+ +.|+||.|-.+|.
T Consensus 5 ~~~v~G~rP-g~pfl~~IpatG~ 26 (29)
T PF10632_consen 5 SPRVFGARP-GSPFLFTIPATGE 26 (29)
T ss_pred cCcEEcccC-CCcEEEEeeccCc
Confidence 344557766 5799999988874
No 67
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=30.75 E-value=98 Score=21.75 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhhhhcCC-CCCHHHH
Q 028737 60 SQTLYQRLVFRHKLYQLREER-DMKPETF 87 (204)
Q Consensus 60 ~~~l~~~~~~~~~~~~~~~~~-~~~~~~l 87 (204)
+..+++.++..++.|.+++++ +++.+.|
T Consensus 49 c~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 49 CEAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 456788888889999999887 6676654
No 68
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=29.84 E-value=99 Score=26.07 Aligned_cols=51 Identities=18% Similarity=0.092 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCcEEEEEcCCCceee--ccceeEeecchhhhHHHHhccCCCCCCHHHHHHH
Q 028737 107 PVIAGLSDEDKPFICTMDSIGAKEL--AKDFVVAGTAGESLYGACEAMFKPDMEPDELFET 165 (204)
Q Consensus 107 ~lv~G~d~~~~p~Ly~id~~G~~~~--~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 165 (204)
+=+||+| ..+..+|..|.... .++-||-|.|+ |.....+.. +++++|.-++
T Consensus 130 IDIGGQD----sK~I~~d~~G~v~dF~MNdkCAAGTGr-FLE~~A~~L---gi~leel~~~ 182 (293)
T TIGR03192 130 LDMGGQD----CKAIHCDEKGKVTNFLMNDKCAAGTGR-GMEVISDLM---QIPIADLGPR 182 (293)
T ss_pred EEeCCCc----eEEEEEcCCCcEeeeeecCcccccccH-HHHHHHHHc---CCCHHHHHHH
Confidence 3367776 36777899997443 34577889987 444444432 5677665443
No 69
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=27.94 E-value=1.1e+02 Score=24.48 Aligned_cols=48 Identities=10% Similarity=0.001 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHHHHHHHHHHH
Q 028737 117 KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQAL 170 (204)
Q Consensus 117 ~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l 170 (204)
.|.|-... .-- ++.+.+++|.=.+...-+|..+ +++.+||.+++.++|
T Consensus 182 ~P~LeI~~-~dV--~a~H~AtvG~idee~LFYL~SR---Gl~~~eA~~Liv~gF 229 (229)
T PF01458_consen 182 IPELEIDE-DDV--KASHGATVGQIDEEQLFYLMSR---GLSEEEARKLIVKGF 229 (229)
T ss_dssp EEEEEE-S-SSE--EEEEEEEEEES-HHHHHHHHCT---T--HHHHHHHHHHHH
T ss_pred EEhHhccc-CCc--EEEEeeEeecCCHHHHHHHHHc---CCCHHHHHHHHHhhC
Confidence 46665333 222 3446889999999999999875 999999999998875
No 70
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=27.40 E-value=1.9e+02 Score=24.04 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=38.7
Q ss_pred eeEeecchhhhHHHHhcc----CCCCCCHHHHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEE
Q 028737 135 FVVAGTAGESLYGACEAM----FKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIK 195 (204)
Q Consensus 135 ~~a~G~g~~~~~~~Le~~----~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~ 195 (204)
..++|.|..+++..+-.. .+.+++++||.+.+++-+..... ..+...-+..++++|..
T Consensus 187 ~s~TG~GE~iir~~~A~~v~~~m~~G~~~~~A~~~~i~~~~~~~~---~~~~~gg~Iavd~~G~~ 248 (263)
T cd04513 187 AAATGDGEEMMRFLPSFQAVEYMRQGMSPKEACLEAIKRIAKHFD---GPDFEGAVVALNKKGEY 248 (263)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---cCCCcEEEEEEcCCCCE
Confidence 458899888877655433 34579999998887776654432 12345667788888753
No 71
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=27.32 E-value=1e+02 Score=27.42 Aligned_cols=52 Identities=25% Similarity=0.181 Sum_probs=32.0
Q ss_pred EEEEcCCCCcEEEEEcCCCcee--eccceeEeecchhhhHHHHhccCCCCCCHHHHHHHHHH
Q 028737 109 IAGLSDEDKPFICTMDSIGAKE--LAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQ 168 (204)
Q Consensus 109 v~G~d~~~~p~Ly~id~~G~~~--~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~ 168 (204)
+||+| .....+|+.|... ..++-||.|.|+ +........ +++++|.-+++.+
T Consensus 274 IGGQD----sK~I~ld~~G~V~dF~MNDKCAAGTGr-FLE~mA~~L---gi~leEl~~lA~~ 327 (432)
T TIGR02259 274 IGGQD----TKGIQIDDHGIVENFQMNDRCAAGCGR-YLGYIADEM---NMGLHELGPLAMK 327 (432)
T ss_pred eCCCc----eEEEEEcCCCcEeeeeecCcccccchH-HHHHHHHHc---CCCHHHHHHHHhc
Confidence 56666 3577889999654 234578889987 444444432 5666665444433
No 72
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.91 E-value=47 Score=23.39 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=27.5
Q ss_pred eEEccCcEEEeeccchhHHHHHHHHHHH---HHHHhhhhcC
Q 028737 42 ISKIHDRLFIGLSGLATDSQTLYQRLVF---RHKLYQLREE 79 (204)
Q Consensus 42 i~~i~~~i~~~~sG~~~D~~~l~~~~~~---~~~~~~~~~~ 79 (204)
+|+|-+..++.+.|..+|+-...+.++. .+..|++-.|
T Consensus 10 ~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~~~A~~YRHYKG 50 (124)
T COG4728 10 IFKIKDKLGLTFVSKSADMSIQVEKAERLIKKASYYRHYKG 50 (124)
T ss_pred EEEEhhhcCcEEEEecchhHHHHHHHHHhhccchheEeecC
Confidence 6888888888888888888888877765 3444544333
No 73
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=26.37 E-value=1.1e+02 Score=19.90 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=32.0
Q ss_pred ecchhhhHHHHhccCCCCCCHHHHHHHHHHHHHHhHhccc
Q 028737 139 GTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDC 178 (204)
Q Consensus 139 G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~ 178 (204)
|+-.+.+..+++..|.-+.+....-..+..+|+.+.+...
T Consensus 21 GsS~~aI~kyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G~ 60 (77)
T PF00538_consen 21 GSSLQAIKKYIKAKYKVDLNPANFKSRLKRALKRGVEKGK 60 (77)
T ss_dssp SEEHHHHHHHHHHHSSCCCCHTTHHHHHHHHHHHHHHCTS
T ss_pred CCCHHHHHHHHHHhcCcCCChHHHHHHHHHHHHHHHHCCc
Confidence 6777889999999997677776677888888888887653
No 74
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.96 E-value=1.7e+02 Score=19.87 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=25.9
Q ss_pred chhhhHHHHhccCCCCCCHHHHHHHHHHHHHHh
Q 028737 141 AGESLYGACEAMFKPDMEPDELFETVSQALLSS 173 (204)
Q Consensus 141 g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~ 173 (204)
+-+.+..+|++...|++|+++.+++=.+++...
T Consensus 30 klerakeiLe~LndpeisL~eSvkLYkeG~~lL 62 (86)
T PRK14065 30 HVHSLEQAIDRLNDPNLSLKDGMDLYKTAMQEL 62 (86)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 446778899999999999999988766665544
No 75
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=25.79 E-value=1.8e+02 Score=21.86 Aligned_cols=55 Identities=18% Similarity=0.022 Sum_probs=40.1
Q ss_pred cEEE-EEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHHHHHHHHHHHHHhH
Q 028737 118 PFIC-TMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSV 174 (204)
Q Consensus 118 p~Ly-~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~ 174 (204)
-.|| .+| .|...... |-..|.+...+-+-+=..+-.+.|.+||+++.........
T Consensus 43 i~l~lkv~-~~~I~d~~-F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~~~~m~~ 98 (150)
T COG0822 43 ITLYLKVD-NGVIEDAK-FKGFGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAK 98 (150)
T ss_pred EEEEEEEc-CCEEEEEE-eeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4555 456 77787776 8888888777777776667789999999999854444443
No 76
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=25.00 E-value=1.3e+02 Score=21.62 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=36.5
Q ss_pred EEEcCC-CceeeccceeEeecchhhhHHHHhccCCCCCCHHHHHHHHHHHHHHhHh
Q 028737 121 CTMDSI-GAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVD 175 (204)
Q Consensus 121 y~id~~-G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~ 175 (204)
..+|.+ |...... |.+.|..--.+-.-+=..+-.+.+++||.++..+-+...+.
T Consensus 42 l~i~~~~~~I~d~~-f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 42 LKIDDDGGRIKDAK-FQGFGCAISIASASMMCELIKGKTLEEALKITAEDIEEALG 96 (126)
T ss_dssp EEESSSTSBEEEEE-EEEESSHHHHHHHHHHHHHHTTSBHHHHHCHHHHHHHHHHT
T ss_pred EEEecCCCeEEEEE-EEeecChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 367887 7787876 88888766544444433344588999998877666655554
No 77
>PF04485 NblA: Phycobilisome degradation protein nblA ; InterPro: IPR007574 In the cyanobacterium Synechococcus species PCC 7942 (P35087 from SWISSPROT), nblA triggers degradation of light-harvesting phycobiliproteins in response to deprivation nutrients including nitrogen, phosphorus and sulphur. The mechanism of nblA function is not known, but it has been hypothesised that nblA may act by disrupting phycobilisome structure, activating a protease or tagging phycobiliproteins for proteolysis. Members of this family have also been identified in the chloroplasts of some red algae.; PDB: 3CS5_D 1OJH_L 2QDO_B 2Q8V_A.
Probab=23.51 E-value=1.2e+02 Score=18.63 Aligned_cols=23 Identities=4% Similarity=0.095 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHHHHhHhcc
Q 028737 155 PDMEPDELFETVSQALLSSVDRD 177 (204)
Q Consensus 155 ~~~s~~ea~~l~~~~l~~~~~~d 177 (204)
.+||.++|.++.++.++..+=+|
T Consensus 20 ~~ls~Eqaq~~Lve~~rqmmike 42 (53)
T PF04485_consen 20 QKLSREQAQELLVELYRQMMIKE 42 (53)
T ss_dssp CTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999887655
No 78
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=21.96 E-value=2.7e+02 Score=22.89 Aligned_cols=54 Identities=19% Similarity=0.115 Sum_probs=36.9
Q ss_pred eeEeecchhhhHHHHhcc----CCCCCCHHHHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcE
Q 028737 135 FVVAGTAGESLYGACEAM----FKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEI 194 (204)
Q Consensus 135 ~~a~G~g~~~~~~~Le~~----~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~ 194 (204)
..++|.|..+++..|-.. .+.+++.++|.+.+++-+... .+...-+..++++|.
T Consensus 176 ~s~TG~GE~iir~~~a~~v~~~~~~g~~~~~A~~~~i~~~~~~------~~~~~G~Ia~d~~G~ 233 (248)
T cd04512 176 ASTTGHGEAIIRTVLARRVVELMEQGMAAQAAAETAVEELGSL------KGGQGGVIAVDSKGE 233 (248)
T ss_pred EEeeecHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh------cCCeEEEEEEeCCCC
Confidence 568899998887766443 345789999988777665543 123445777788875
No 79
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=21.40 E-value=1.4e+02 Score=18.15 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=24.2
Q ss_pred hhHHHHhccCCCCCCHHHHHHHHHHHHHHhHhc
Q 028737 144 SLYGACEAMFKPDMEPDELFETVSQALLSSVDR 176 (204)
Q Consensus 144 ~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~ 176 (204)
.+-.-+.++...+||.-||+.++.+-|+.....
T Consensus 15 ~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~~~~ 47 (51)
T PF03701_consen 15 QAVERIQELMAQGMSSGEAIAIVAQEIREEHQG 47 (51)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh
Confidence 334444555567999999999999999876543
No 80
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=21.13 E-value=2.6e+02 Score=23.14 Aligned_cols=54 Identities=7% Similarity=0.065 Sum_probs=35.3
Q ss_pred eeEeecchhhhHHHHhcc----CCCCCCHHHHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcE
Q 028737 135 FVVAGTAGESLYGACEAM----FKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEI 194 (204)
Q Consensus 135 ~~a~G~g~~~~~~~Le~~----~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~ 194 (204)
..++|.|..+++..+-.. .+.+++++||.+.+++-+.... +...-+..++++|.
T Consensus 179 ~s~TG~GE~iir~~~a~~v~~~m~~g~s~~eA~~~~i~~~~~~~------~g~gG~Iavd~~G~ 236 (261)
T cd04702 179 VSTTGHGESIMKVVLARLILDHMEQGGSAQEAADKAIEYMTERV------KGTGGAIVLDSSGE 236 (261)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc------CCceEEEEEeCCCC
Confidence 568899988877765433 3457899999888777665432 22334555666664
No 81
>PRK02487 hypothetical protein; Provisional
Probab=20.88 E-value=3.7e+02 Score=20.22 Aligned_cols=41 Identities=15% Similarity=0.087 Sum_probs=31.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHhcccccCCcEEEEEEcCCcEEEEE
Q 028737 153 FKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERI 198 (204)
Q Consensus 153 ~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~~v~i~~i~k~g~~~~~ 198 (204)
..+.+|.++|.+++..+++.+.++ +.++.|.|+. .|.....
T Consensus 19 ~~~~l~~~~A~~l~~~a~~~A~~~----g~~v~IaVv~-~G~~l~~ 59 (163)
T PRK02487 19 VFPHFDNDDAWQLGSLLVELARER----GLPIAIDITL-NGQPLFY 59 (163)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEE-CCcEEEE
Confidence 357899999999999999988754 4588888885 6654433
No 82
>PRK11325 scaffold protein; Provisional
Probab=20.60 E-value=1.8e+02 Score=20.95 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=36.1
Q ss_pred cEEE-EEcCCCceeeccceeEeecchhhhHHHHhccCCCCCCHHHHHHHHHHHHHHh
Q 028737 118 PFIC-TMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSS 173 (204)
Q Consensus 118 p~Ly-~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~ 173 (204)
-.|| .+|+.|...+.. |.+.|.....+-..+=..+-.+.+++||..+..+.+...
T Consensus 41 i~l~l~v~~~~~I~d~~-f~~~GC~is~Asas~~~e~~~Gktl~ea~~i~~~~i~~~ 96 (127)
T PRK11325 41 MKLQIKVNDEGIIEDAK-FKTYGCGSAIASSSLVTEWVKGKTLDEALAIKNTDIAEE 96 (127)
T ss_pred EEEEEEECCCCeEEEEE-EEeeCCHHHHHHHHHHHHHHcCCCHHHHHhcCHHHHHHH
Confidence 3444 566667777775 877776665554444444456889999988877655443
No 83
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=20.19 E-value=1.3e+02 Score=18.03 Aligned_cols=31 Identities=19% Similarity=-0.001 Sum_probs=19.0
Q ss_pred EEEcCCCceeeccceeEeecchhhhHHHHhcc
Q 028737 121 CTMDSIGAKELAKDFVVAGTAGESLYGACEAM 152 (204)
Q Consensus 121 y~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~ 152 (204)
|.|.|+|.....- -...|+....+...||..
T Consensus 3 ~~I~~dG~V~~~v-~G~~G~~C~~~t~~lE~~ 33 (48)
T PF11211_consen 3 FTIYPDGRVEEEV-EGFKGSSCLEATAALEEA 33 (48)
T ss_pred EEECCCcEEEEEE-EeccChhHHHHHHHHHHH
Confidence 6789999886532 334566555555555543
No 84
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=20.12 E-value=1.3e+02 Score=21.62 Aligned_cols=43 Identities=14% Similarity=0.037 Sum_probs=29.4
Q ss_pred ccchhHHHHHHHHHHHHHHH-hhhhc-------CCCCCHHHHHHHHHHHHH
Q 028737 54 SGLATDSQTLYQRLVFRHKL-YQLRE-------ERDMKPETFASLVSALLY 96 (204)
Q Consensus 54 sG~~~D~~~l~~~~~~~~~~-~~~~~-------~~~~~~~~la~~l~~~~~ 96 (204)
.|..-|+..+.+.++..... +...+ ...+|.+.+|.+|.+.+-
T Consensus 45 ~G~viDf~~lk~~~~~~~~~~lDH~~Ln~~~~~~~~pT~Enia~~i~~~l~ 95 (124)
T TIGR00039 45 TGMVMDFSDLKKIVKEVIDEPLDHKLLNDDVNYLENPTSENVAVYIFDNLK 95 (124)
T ss_pred ceEEEEHHHHHHHHHHHhccCCCCceeccCCCCCCCCCHHHHHHHHHHHHH
Confidence 35566888888888776644 33221 345799999999987653
Done!