Query 028737
Match_columns 204
No_of_seqs 107 out of 1081
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 18:20:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028737.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2229-2233//hhsearch_pdb/028737hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ryp_M 20S proteasome; multica 1.0 1 1 315.8 26.8 203 1-204 2-222 (222)
2 1iru_J 20S proteasome; cell cy 1.0 1 1 315.8 27.4 204 1-204 1-205 (205)
3 1iru_M 20S proteasome; cell cy 1.0 1 1 314.9 27.6 203 1-204 2-213 (213)
4 1ryp_J 20S proteasome; multica 1.0 1 1 307.8 27.5 202 2-204 2-204 (204)
5 1yar_H Proteasome beta subunit 1.0 1 1 299.8 24.6 193 1-196 1-194 (217)
6 3nzj_K Proteasome component PR 1.0 1 1 296.9 25.1 194 3-197 70-263 (287)
7 3h4p_a Proteasome subunit beta 1.0 1 1 294.3 23.6 189 8-196 1-189 (219)
8 1ryp_N 20S proteasome; multica 1.0 1 1 289.7 23.5 193 4-197 4-209 (233)
9 1ryp_A 20S proteasome; multica 1.0 1 1 289.4 22.0 192 4-200 25-228 (243)
10 1g0u_M Proteasome component PR 1.0 1 1 288.5 23.5 192 5-197 38-242 (266)
No 1
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=1.00 E-value=1 Score=315.83 Aligned_cols=203 Identities=21% Similarity=0.351 Sum_probs=196.7
Q ss_pred CCCCCCCCCEEEEEEECCEEEEEEECCCCCCCEEEECCCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCC-
Q ss_conf 9843112954999981998999684565228322313567258702747996416666899999999999987535419-
Q 028737 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREE- 79 (204)
Q Consensus 1 ~~~~~~~g~t~vgi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~- 79 (204)
++|++++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+++++
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (222)
T 1ryp_M 2 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHND 81 (222)
T ss_dssp CCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCEEEEEECCEEEEEEECCCCCCCEECCCCCCCEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 88611588549999949999999925666687732797671799279889990536899999999999999999998199
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEECCHHHHHHHHHCC-------
Q ss_conf 9999999999999999851269621122799874999808999859985012066268614646358978624-------
Q 028737 80 RDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAM------- 152 (204)
Q Consensus 80 ~~~~~~~~a~~l~~~~~~~r~~P~~v~~li~G~d~~~~p~L~~id~~G~~~~~~~~~aiG~g~~~~~~~Le~~------- 152 (204)
++++++.+++.+++++|++|++||++++|+||||++++|+||++||+|++.+++ ++|+|+|+++++++||+.
T Consensus 82 ~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~-~~a~Gsg~~~a~~~Le~~~~~~~~~ 160 (222)
T 1ryp_M 82 KKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQ-CRAGGAAASLIMPFLDNQVNFKNQY 160 (222)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEES-EEEEETTHHHHHHHHHHHTSCTTCB
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEECC-EEEECCCHHHHHHHHHCCCCCCCCC
T ss_conf 878999999999999872088986499999999699996999998986778418-8998376999999984623323444
Q ss_pred ----------CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf ----------9999999899999999999957402212796899999389579998316789
Q 028737 153 ----------FKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 204 (204)
Q Consensus 153 ----------~~~~~s~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~k~g~~~~~~~~~~~ 204 (204)
|+++|+.+||++++.+||..+.++|..+++++++++|+++|++++.+|+|+|
T Consensus 161 ~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~~r~d 222 (222)
T 1ryp_M 161 EPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222 (222)
T ss_dssp CTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEECCCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCC
T ss_conf 44444444467899899999999999999999736567996899999089869997644689
No 2
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=1.00 E-value=1 Score=315.80 Aligned_cols=204 Identities=58% Similarity=0.984 Sum_probs=196.7
Q ss_pred CCCCCCCCCEEEEEEECCEEEEEEECCCCCCCEEEECCCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98431129549999819989996845652283223135672587027479964166668999999999999875354199
Q 028737 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER 80 (204)
Q Consensus 1 ~~~~~~~g~t~vgi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 80 (204)
|+|++++|+|+||++++||||||+|+|.+.|.++.+++.+||++|++|+++++||+.+|++.+.++++.+++.|++++++
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (205)
T 1iru_J 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGR 80 (205)
T ss_dssp -CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCEEEEEEECCEEEEEECCCCCCCCEEEECCCCCEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 98524789719999959999999878544587676068761899079889991556899999999999999988752499
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC-CCCCEEEEECCCCCEEECCCEEEEECCHHHHHHHHHCCCCCCCCH
Q ss_conf 9999999999999998512696211227998749-998089998599850120662686146463589786249999999
Q 028737 81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSD-EDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEP 159 (204)
Q Consensus 81 ~~~~~~~a~~l~~~~~~~r~~P~~v~~li~G~d~-~~~p~L~~id~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~ 159 (204)
+++++.+++.+++++|++|..||++++|++|||+ +++|+||++||+|++.++.+|+|+|+|+++++++||+.|+++|+.
T Consensus 81 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 160 (205)
T 1iru_J 81 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP 160 (205)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCH
T ss_conf 89999999999999998658985178999998079997089998998773323883585437899999986556898799
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 899999999999957402212796899999389579998316789
Q 028737 160 DELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 204 (204)
Q Consensus 160 ~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~k~g~~~~~~~~~~~ 204 (204)
+||++++.++|..+.++|..+++++++++|+++|++++.+++|+|
T Consensus 161 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 205 (205)
T 1iru_J 161 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205 (205)
T ss_dssp HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBCCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCC
T ss_conf 999999999999999757654893699999589879998506789
No 3
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=1.00 E-value=1 Score=314.92 Aligned_cols=203 Identities=28% Similarity=0.447 Sum_probs=196.4
Q ss_pred CCCCCCCCCEEEEEEECCEEEEEEECCCCCCCEEEECCCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98431129549999819989996845652283223135672587027479964166668999999999999875354199
Q 028737 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER 80 (204)
Q Consensus 1 ~~~~~~~g~t~vgi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 80 (204)
.+|++++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||+.+|++.+.++++.+++.|++++++
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (213)
T 1iru_M 2 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNK 81 (213)
T ss_dssp CCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEECCCCCCEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 88746799729999939999999878766697786178771899379889990506899999999999999999996099
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEECCHHHHHHHHHCC--------
Q ss_conf 999999999999999851269621122799874999808999859985012066268614646358978624--------
Q 028737 81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAM-------- 152 (204)
Q Consensus 81 ~~~~~~~a~~l~~~~~~~r~~P~~v~~li~G~d~~~~p~L~~id~~G~~~~~~~~~aiG~g~~~~~~~Le~~-------- 152 (204)
+++++.+++.+++++|++|++||++++|+||||++++|+||++||+|++.+++ ++|+|+|+++++++||+.
T Consensus 82 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~-~~aiGsg~~~a~~~Le~~~~~~~~~~ 160 (213)
T 1iru_M 82 AMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQN 160 (213)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEES-EEEEETTHHHHHHHHHHHTTCCSCSS
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEECC-EEEEEECHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999999999996389984699999999689988999999998978889-89994589999999961211135455
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf -9999999899999999999957402212796899999389579998316789
Q 028737 153 -FKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 204 (204)
Q Consensus 153 -~~~~~s~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~k~g~~~~~~~~~~~ 204 (204)
|+++|+.+||++++.+||..+.++|..+++++++++|+++|++++.+++|+|
T Consensus 161 ~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 213 (213)
T 1iru_M 161 VEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 213 (213)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEEEEECCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCC
T ss_conf 67899799999999999999999857765995899999689859998645789
No 4
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=1.00 E-value=1 Score=307.78 Aligned_cols=202 Identities=50% Similarity=0.921 Sum_probs=194.3
Q ss_pred CCCCCCCCEEEEEEECCEEEEEEECCCCCCCEEEECCCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 84311295499998199899968456522832231356725870274799641666689999999999998753541999
Q 028737 2 SITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERD 81 (204)
Q Consensus 2 ~~~~~~g~t~vgi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 81 (204)
+|++++|+|+||++++||||||+|+|.+.+.++.+++.+||++|+ |+++++||+.+|++.+.++++.+++.|+++++++
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 80 (204)
T 1ryp_J 2 DPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERA 80 (204)
T ss_dssp CGGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCCCCCEEEECCCCEEEEEC-CEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 975788970999992999999985875558877607754089938-8999901768999999999999999873025987
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC-CCCCEEEEECCCCCEEECCCEEEEECCHHHHHHHHHCCCCCCCCHH
Q ss_conf 999999999999998512696211227998749-9980899985998501206626861464635897862499999998
Q 028737 82 MKPETFASLVSALLYEKRFGPYFCQPVIAGLSD-EDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPD 160 (204)
Q Consensus 82 ~~~~~~a~~l~~~~~~~r~~P~~v~~li~G~d~-~~~p~L~~id~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ 160 (204)
++++.+++.+++++|++|..||++++|++|||+ +++|+||++||+|++.++.+|+|+|+|+++++++||+.|+++|+.+
T Consensus 81 ~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~e 160 (204)
T 1ryp_J 81 IEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPE 160 (204)
T ss_dssp CCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCHH
T ss_conf 99999999999999986699963899999995799964999999987755158645862178999999852247995999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 99999999999957402212796899999389579998316789
Q 028737 161 ELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 204 (204)
Q Consensus 161 ea~~l~~~al~~~~~~d~~~~~~i~i~~i~k~g~~~~~~~~~~~ 204 (204)
||++++.++|..+.++|..+++++++++|+++|++++.+|+|+|
T Consensus 161 ea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 204 (204)
T 1ryp_J 161 DLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD 204 (204)
T ss_dssp HHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCC
T ss_conf 99999999999999747454994899999289779998625789
No 5
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=1.00 E-value=1 Score=299.76 Aligned_cols=193 Identities=23% Similarity=0.376 Sum_probs=186.6
Q ss_pred CCCCCCCCCEEEEEEECCEEEEEEECCCCCCCEEEECCCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98431129549999819989996845652283223135672587027479964166668999999999999875354199
Q 028737 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER 80 (204)
Q Consensus 1 ~~~~~~~g~t~vgi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 80 (204)
|+|++++|+|+||++++||||||+|+|.+.|.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|++++++
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (217)
T 1yar_H 1 MNQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRV 80 (217)
T ss_dssp --------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEECCCCCCEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99877887509999959989999807777788785586677599079899995717899999999999999999998789
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEECCHHHHHHHHHCCCCCCCCHH
Q ss_conf 99999999999999985126962112279987499980899985998501206626861464635897862499999998
Q 028737 81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPD 160 (204)
Q Consensus 81 ~~~~~~~a~~l~~~~~~~r~~P~~v~~li~G~d~~~~p~L~~id~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ 160 (204)
+++++.+++.+++++|.+|.+||++++|+|||| + +|+||++||+|++.+++ ++|+|+|+++++++||+.|+++|+.+
T Consensus 81 ~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~-gp~Ly~idp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~~s~e 157 (217)
T 1yar_H 81 NMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-T-APHVFSIDAAGGSVEDI-YASTGSGSPFVYGVLESQYSEKMTVD 157 (217)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES-S-SEEEEEECTTCCEEEES-EEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC-C-CCEEEEECCCCCEEECC-EEEECCCHHHHHHHHHHHCCCCCCHH
T ss_conf 999999999999999843789864789999988-9-88899998998867117-89991788999999986512699999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEECC-CCEEE
Q ss_conf 9999999999995740221279689999938-95799
Q 028737 161 ELFETVSQALLSSVDRDCLSGWGGHVYIVTP-TEIKE 196 (204)
Q Consensus 161 ea~~l~~~al~~~~~~d~~~~~~i~i~~i~k-~g~~~ 196 (204)
||++++.+||..+.++|..+++++++++|++ +|++.
T Consensus 158 ea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~ 194 (217)
T 1yar_H 158 EGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQ 194 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEE
T ss_conf 9999999999999850677899589999988999799
No 6
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=1.00 E-value=1 Score=296.94 Aligned_cols=194 Identities=21% Similarity=0.263 Sum_probs=186.4
Q ss_pred CCCCCCCEEEEEEECCEEEEEEECCCCCCCEEEECCCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 43112954999981998999684565228322313567258702747996416666899999999999987535419999
Q 028737 3 ITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDM 82 (204)
Q Consensus 3 ~~~~~g~t~vgi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 82 (204)
....+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|++++++++
T Consensus 70 ~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~i 149 (287)
T 3nzj_K 70 IKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERI 149 (287)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHECCCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 21205716999998998999980665668662057766089986958999437778999999999999999888729978
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEECCHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 99999999999998512696211227998749998089998599850120662686146463589786249999999899
Q 028737 83 KPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDEL 162 (204)
Q Consensus 83 ~~~~~a~~l~~~~~~~r~~P~~v~~li~G~d~~~~p~L~~id~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea 162 (204)
+++.+++++++++|.+|..||++++|+||||++++|+||++||+|++.+++ ++|+|+|+++++++||+.|+++|+.+||
T Consensus 150 sv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~-~~AiGsgs~~a~~~Le~~y~~dms~eEA 228 (287)
T 3nzj_K 150 SVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGD-IFCVGSGQTFAYGVLDSNYKWDLSVEDA 228 (287)
T ss_dssp CHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECS-EEEESTTHHHHHHHHHTSCCTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEECCCCEEEECC-EEEEECCHHHHHHHHHHHHCCCCCHHHH
T ss_conf 799999999999986357883279999987079998799998980089718-6998464499999999751379998999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 99999999995740221279689999938957999
Q 028737 163 FETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKER 197 (204)
Q Consensus 163 ~~l~~~al~~~~~~d~~~~~~i~i~~i~k~g~~~~ 197 (204)
++++.+||..+.+||..+++++++++|+++|++..
T Consensus 229 i~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l 263 (287)
T 3nzj_K 229 LYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYH 263 (287)
T ss_dssp HHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEE
T ss_conf 99999999999852767899659999967977996
No 7
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=294.34 Aligned_cols=189 Identities=25% Similarity=0.423 Sum_probs=182.1
Q ss_pred CCEEEEEEECCEEEEEEECCCCCCCEEEECCCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 95499998199899968456522832231356725870274799641666689999999999998753541999999999
Q 028737 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (204)
Q Consensus 8 g~t~vgi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 87 (204)
|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||+.+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CCCEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 93199999799999998177666887622655506981698999911758999999999999999989975998999999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 99999999851269621122799874999808999859985012066268614646358978624999999989999999
Q 028737 88 ASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVS 167 (204)
Q Consensus 88 a~~l~~~~~~~r~~P~~v~~li~G~d~~~~p~L~~id~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea~~l~~ 167 (204)
++++++++|.+|++||+|++|+||||++++|+||++||+|++.++++++|+|+|+++++++||+.|+++|+.+||++++.
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~ 160 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLAL 160 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEECCCCCEEECCCEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99999999972589811899999981799828999979975676587799757879999999975479989999999999
Q ss_pred HHHHHHHHCCCCCCCCEEEEEECCCCEEE
Q ss_conf 99999574022127968999993895799
Q 028737 168 QALLSSVDRDCLSGWGGHVYIVTPTEIKE 196 (204)
Q Consensus 168 ~al~~~~~~d~~~~~~i~i~~i~k~g~~~ 196 (204)
+||..+.++|..+++++++++|+++|++.
T Consensus 161 ~al~~~~~rd~~sg~~i~v~vi~~~g~~~ 189 (219)
T 3h4p_a 161 NALKSAMERDTFSGNGISLAVITKDGVKI 189 (219)
T ss_dssp HHHHHHHTSCSSCCSCCCEEEEETTEEEE
T ss_pred HHHHHHHHHCCCCCCCEEEEEEECCCEEE
T ss_conf 99999985167889968999995897699
No 8
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=1.00 E-value=1 Score=289.75 Aligned_cols=193 Identities=16% Similarity=0.200 Sum_probs=184.4
Q ss_pred CCCCCCEEEEEEECCEEEEEEECCCCCCCEEEECCCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH-----HC
Q ss_conf 3112954999981998999684565228322313567258702747996416666899999999999987535-----41
Q 028737 4 TEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQL-----RE 78 (204)
Q Consensus 4 ~~~~g~t~vgi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~~ 78 (204)
.+.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|++ ++
T Consensus 4 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 83 (233)
T 1ryp_N 4 PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADA 83 (233)
T ss_dssp CCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTT
T ss_pred CCCCCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCCEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHC
T ss_conf 63587559999979989999807555587455177674699079889992516789999999999999987533542433
Q ss_pred CCCCCHHHHHHHHHHHHHHCC--CCCCCEEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEECCHHHHHHHHHCCCCC-
Q ss_conf 999999999999999998512--69621122799874999808999859985012066268614646358978624999-
Q 028737 79 ERDMKPETFASLVSALLYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP- 155 (204)
Q Consensus 79 ~~~~~~~~~a~~l~~~~~~~r--~~P~~v~~li~G~d~~~~p~L~~id~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~- 155 (204)
+++++++.+++++++++|++| ++||++++|++|||++++|+||++||+|++.+++ ++|+|+|+++++++||+.|++
T Consensus 84 ~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~ 162 (233)
T 1ryp_N 84 EEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSP-TLATGFGAHMANPLLRKVVDRE 162 (233)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCS-EEECTHHHHHHHHHHTTTCSSG
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEECC-EEEECCCHHHHHHHHHHHHCCC
T ss_conf 987999999999999999726799984079999998599987999999986768738-8998767999999999761123
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC-CEEEE
Q ss_conf ----9999899999999999957402212796899999389-57999
Q 028737 156 ----DMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPT-EIKER 197 (204)
Q Consensus 156 ----~~s~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~k~-g~~~~ 197 (204)
+|+.+||++++.+||..+.++|..+++++++++|+++ |++..
T Consensus 163 ~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~ 209 (233)
T 1ryp_N 163 SDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFK 209 (233)
T ss_dssp GGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEC
T ss_conf 56689999999999999999999744667994799999789996982
No 9
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=1.00 E-value=1 Score=289.42 Aligned_cols=192 Identities=17% Similarity=0.175 Sum_probs=180.5
Q ss_pred CCCC-CCEEEEEEECCEEEEEEECCCCCCCEEEECCCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3112-954999981998999684565228322313567258702747996416666899999999999987535419999
Q 028737 4 TEYN-GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDM 82 (204)
Q Consensus 4 ~~~~-g~t~vgi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 82 (204)
.+++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|+++++||+.+|++.+.++++.+++.|++++++++
T Consensus 25 av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~ 103 (243)
T 1ryp_A 25 ATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDM 103 (243)
T ss_dssp HTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHCCCCCEEEEEECCEEEEEEEECCC-CCCCCCCCCCCEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 985679757999929999999972477-6564777678369977999999985678899999999999999999978999
Q ss_pred CHHHHHHHHHHHH--HHCC--CCCCCEEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEECCHHHHHHHHHCCCCC---
Q ss_conf 9999999999999--8512--69621122799874999808999859985012066268614646358978624999---
Q 028737 83 KPETFASLVSALL--YEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP--- 155 (204)
Q Consensus 83 ~~~~~a~~l~~~~--~~~r--~~P~~v~~li~G~d~~~~p~L~~id~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~--- 155 (204)
+++.+++++++++ |++| ++||+|++|+||||++++|+||++||+|++.+++ ++|+|+|+++++++||+.|++
T Consensus 104 ~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~-~~a~G~gs~~a~~~Le~~~~~~~~ 182 (243)
T 1ryp_A 104 PCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYK-ATATGPKQQEITTNLENHFKKSKI 182 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBS-EEEESTTHHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEEE-EEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 9999999999999997466786240137999998179986899996998878778-999887967889999987532044
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEC
Q ss_conf ----999989999999999995740221279689999938957999831
Q 028737 156 ----DMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILK 200 (204)
Q Consensus 156 ----~~s~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~k~g~~~~~~~ 200 (204)
+|+.+||++++.+||..+.++| .+++++++++|+++| ++.++
T Consensus 183 ~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g--~~~l~ 228 (243)
T 1ryp_A 183 DHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDK--FFTLS 228 (243)
T ss_dssp SSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTE--EEECC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCC-CCCCCEEEEEEECCC--EEECC
T ss_conf 55569999999999999999984556-898958999997897--69999
No 10
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=1.00 E-value=1 Score=288.46 Aligned_cols=192 Identities=16% Similarity=0.201 Sum_probs=183.3
Q ss_pred CCCCCEEEEEEECCEEEEEEECCCCCCCEEEECCCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH-----HCC
Q ss_conf 112954999981998999684565228322313567258702747996416666899999999999987535-----419
Q 028737 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQL-----REE 79 (204)
Q Consensus 5 ~~~g~t~vgi~~~dgVvla~d~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~~~ 79 (204)
..+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|++|++||+.+|++.+.++++.+++.|++ +++
T Consensus 38 v~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~ 117 (266)
T 1g0u_M 38 IVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAE 117 (266)
T ss_dssp CEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTT
T ss_pred CCCCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHCC
T ss_conf 03685599999799999998277666866534776727993798899935278999999999999999854125312249
Q ss_pred CCCCHHHHHHHHHHHHHHCC--CCCCCEEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEECCHHHHHHHHHCCCCC--
Q ss_conf 99999999999999998512--69621122799874999808999859985012066268614646358978624999--
Q 028737 80 RDMKPETFASLVSALLYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP-- 155 (204)
Q Consensus 80 ~~~~~~~~a~~l~~~~~~~r--~~P~~v~~li~G~d~~~~p~L~~id~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~-- 155 (204)
++++++.+++.+++++|++| ++||+|++|+||||++++|+||++||+|++.+++ ++|+|+|+++++++||+.|++
T Consensus 118 ~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~~ 196 (266)
T 1g0u_M 118 EALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSP-TLATGFGAHMANPLLRKVVDRES 196 (266)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCS-EEECTHHHHTHHHHHTTTCSSGG
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEECC-EEEECCCHHHHHHHHHHHHCCCC
T ss_conf 87999999999999999752689996289999999089987999999998778579-89981688999999998621215
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC-CEEEE
Q ss_conf ---9999899999999999957402212796899999389-57999
Q 028737 156 ---DMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPT-EIKER 197 (204)
Q Consensus 156 ---~~s~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~k~-g~~~~ 197 (204)
+|+.+||++++.+||..+.++|..++++++|++|+++ |++..
T Consensus 197 ~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~ 242 (266)
T 1g0u_M 197 DIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFK 242 (266)
T ss_dssp GGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEC
T ss_conf 6789899999999999999999746778993899999789996984
Done!