BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028742
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XOY|A Chain A, Solution Structure Of At3g04780.1, An Arabidopsis Ortholog
Of The C-Terminal Domain Of Human Thioredoxin-Like
Protein
Length = 161
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 21/156 (13%)
Query: 20 LYKHIDLSKVSALNEA----VPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTT 75
L ID S V LN++ +P ++K ++ E G +LES D D +LL+YIPF
Sbjct: 16 LLDFIDWSGVECLNQSSSHSLPNALKQGYREDE------GLNLES-DADEQLLIYIPFNQ 68
Query: 76 DVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLV-ENLQG---VLEY 131
+K+ S +I G + P ++ F N+E + FS+ D +L ENL+G VL
Sbjct: 69 VIKLHSFAI-KGPEEEGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGKPVVL-- 125
Query: 132 QTRYSKFQSVANITLHFPDN-FGGDTTQIHYIGLKG 166
+Y KFQ+V ++T+ N G + T++ I L G
Sbjct: 126 --KYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYG 159
>pdb|1WWY|A Chain A, Solution Structure Of The Duf1000 Domain Of A
Thioredoxin-Li 1
Length = 171
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 26/161 (16%)
Query: 45 KAWEQRLNSSGEH------------LESNDGDPELLVYIPFTTDVKIKSISIVGGADGTS 92
KA + LN S EH LES D D +LL+ + F VK+ S+ G +G
Sbjct: 18 KAGCECLNESDEHGFDNCLRKDTTFLES-DCDEQLLITVAFNQPVKLYSMKFQGPDNGQG 76
Query: 93 PSKMRVFIN-REGIDFSDAQDMQAIQEWDLVEN---LQGVLEYQTRYSKFQSVANITLHF 148
P +++FIN +DF +A+ + Q +L E+ G++ RY KFQ+V ++T+
Sbjct: 77 PKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPL--RYVKFQNVNSVTIFV 134
Query: 149 PDNFG-GDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPS 188
N G +TT+I Y G Q AT + + + PS
Sbjct: 135 QSNQGEEETTRISYFTFIGTPVQ------ATNMNDFKSGPS 169
>pdb|3VOF|A Chain A, Cellobiohydrolase Mutant, Cccel6c D102a, In The Closed
Form
Length = 395
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 146 LHF-----PDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPN 186
LHF PD+ G T +H +G AT K + TI +PN
Sbjct: 141 LHFSIVLEPDSLGNMVTNMHVPKCQGAATAYKEGIAYTIASLQKPN 186
>pdb|3A64|A Chain A, Crystal Structure Of Cccel6c, A Glycoside Hydrolase Family
6 Enzyme, From Coprinopsis Cinerea
pdb|3A9B|A Chain A, Cccel6c, A Glycoside Hydrolase Family 6 Enzyme, Complexed
With Cellobiose
pdb|3ABX|A Chain A, Cccel6c, A Glycoside Hydrolase Family 6 Enzyme, Complexed
With P-Nitrophenyl Beta-D-Cellotrioside
Length = 395
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 146 LHF-----PDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPN 186
LHF PD+ G T +H +G AT K + TI +PN
Sbjct: 141 LHFSIVLEPDSLGNMVTNMHVPKCQGAATAYKEGIAYTIASLQKPN 186
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 110 AQDMQAIQEWDLVENLQGVLEYQTRYS---KFQSVANITLHFPDNFGGDTTQIHYI 162
A ++A++ D+V + G L+ +++ + + V + FP FG D +H +
Sbjct: 69 ASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAV 124
>pdb|4DT6|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor
pdb|4DUM|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor
Length = 240
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 18 WSLYKHIDLSKVSALNEAVPGSVKSVFK-----AWEQRLNSSG 55
W+LY HI LS + +PG S+FK WE N G
Sbjct: 96 WALYNHIQLS-----SNLMPGCDYSLFKDGIEPMWEDEKNKRG 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,945,728
Number of Sequences: 62578
Number of extensions: 236647
Number of successful extensions: 408
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 15
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)