Query 028742
Match_columns 204
No_of_seqs 112 out of 391
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 18:17:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028742.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2234-2238//hhsearch_pdb/028742hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xoy_A Hypothetical protein AT 1.0 1 1 342.4 11.8 150 14-168 10-161 (161)
2 1wwy_A Thioredoxin-like protei 1.0 1 1 330.1 12.5 159 15-194 7-168 (171)
3 1jhj_A APC10; beta sandwich, j 1.0 1 1 35.7 8.3 133 23-169 21-162 (171)
4 1gqp_A DOC1/APC10; cell cycle, 1.0 1 1 33.6 7.7 135 22-170 51-196 (221)
5 4dxt_A SUN domain-containing p 1.0 1 1 29.3 13.7 113 38-168 67-196 (198)
6 2yc2_A IFT25, intraflagellar t 1.0 1 1 21.6 10.8 109 37-167 26-138 (139)
7 1tvg_A LOC51668 protein; cell 1.0 1 1 19.3 12.9 112 36-169 33-148 (153)
8 4a41_A GH89_CBM32-5, alpha-N-a 1.0 1 1 16.6 12.0 102 1-110 1-116 (161)
9 3o4f_A Spermidine synthase; am 1.0 1 1 16.4 -5.5 35 58-92 59-97 (294)
10 4gm2_A ATP-dependent CLP prote 1.0 1 1 14.4 -2.1 63 1-71 1-65 (205)
No 1
>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: b.18.1.26
Probab=1.00 E-value=1 Score=342.45 Aligned_cols=150 Identities=32% Similarity=0.509 Sum_probs=139.7
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCC
Q ss_conf 87755432221146526973777776222200120002899962004999974389920478213779999719999999
Q 028742 14 CSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTSP 93 (204)
Q Consensus 14 ~~~~~~L~~~ID~~~v~cLN~~~~~~~~~i~k~~~~r~d~~~~~l~S~D~D~QLiI~IpF~~~Vkl~sI~I~~~~~~~~P 93 (204)
..++++|+++||+++++|||++.+++++++||+|+ |.+...+ ++| |+|+||||+|||+++||||||+|+++++ ++|
T Consensus 10 ~~~~~~L~~~Id~~~v~cLNe~~~~~~~~v~k~~~-r~~~~~~-leS-D~DeQLli~IPFt~~VKl~Si~i~~~~~-~~P 85 (161)
T 1xoy_A 10 PKGQVDLLDFIDWSGVECLNQSSSHSLPNALKQGY-REDEGLN-LES-DADEQLLIYIPFNQVIKLHSFAIKGPEE-EGP 85 (161)
T ss_dssp CSSCEESSTTBCCSSCEESCSCTTSCSHHHHSTTS-CCTTTCC-EEC-SSCSSEEEEEEEEEEECEEEEEEECCTT-TSE
T ss_pred CCCHHHHHHHCCCCCCEEECCCCCCCHHHEECHHH-HCCCCCC-CCC-CCCCEEEEEEECCCCEEEEEEEEECCCC-CCC
T ss_conf 76322456628525347965889987654655046-2568854-747-9980579995668957898999978999-999
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCEEEEEECC-CCCEEEEECCCCCCCCCCEEEEEECCCCCC-CEEEEEEEEEEEEE
Q ss_conf 1699843599888433336785438993066-652279960256746655899998089999-83499999999477
Q 028742 94 SKMRVFINREGIDFSDAQDMQAIQEWDLVEN-LQGVLEYQTRYSKFQSVANITLHFPDNFGG-DTTQIHYIGLKGEA 168 (204)
Q Consensus 94 k~iKlf~N~~~ldF~~~~~~~p~q~l~l~~~-~~g~~e~~Lk~~KFqnV~sLtifi~~n~g~-~~t~I~yIgl~G~~ 168 (204)
|+||||+|||+|||+++++.+|+|+|+|+++ +.| .+|+||++|||||++|||||++|+|+ |.|+|+||||+|+.
T Consensus 86 k~iKlf~N~~~ldFd~a~~~~p~Q~~el~~~~~~g-~~~~lr~vkFqnV~sLtlf~~~n~~g~e~T~I~~I~l~G~~ 161 (161)
T 1xoy_A 86 KTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKG-KPVVLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGST 161 (161)
T ss_dssp EEEEEEESCSCCCHHHHTTSCCSEEECCCTTGGGT-CCEECCTTTCSCEEEEEEEEEEETTCCSCCEESEEEEEECC
T ss_pred CEEEEEECCCCCCHHHHCCCCCCEEEECCCCCCCC-CEEECCCEEECCCCEEEEEEECCCCCCCCEEEEEEEEEECC
T ss_conf 38998507998884360348986589878876788-58863504574667899998058899751899999998039
No 2
>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical protein, regulatory protei apoptosis, cancer; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=330.10 Aligned_cols=159 Identities=29% Similarity=0.460 Sum_probs=138.6
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCC
Q ss_conf 77554322211465269737777762222001200028999620049999743899204782137799997199999991
Q 028742 15 SSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPS 94 (204)
Q Consensus 15 ~~~~~L~~~ID~~~v~cLN~~~~~~~~~i~k~~~~r~d~~~~~l~S~D~D~QLiI~IpF~~~Vkl~sI~I~~~~~~~~Pk 94 (204)
+++++||++||+++++|||+++.+++..+++. ...+ ++| |+|+||||+|||+++||||||+|++++++++||
T Consensus 7 ~~~~~L~~~ID~~~v~cLNe~~~~~~~~~l~~------~~~~-leS-D~DeQLli~IPFt~~VKl~Si~i~~~~~~~~Pk 78 (171)
T 1wwy_A 7 GGYMDLMPFINKAGCECLNESDEHGFDNCLRK------DTTF-LES-DCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPK 78 (171)
T ss_dssp CCCBCCGGGEEEEEEEEESCCSSSCSSTTSSS------SSCC-BCC-SSCSCCEEEEEEEEEEEEEEEEECCCSSSCCBC
T ss_pred CCHHHHHHHCCCCCCEEECCCCCCCHHHHHCC------CCCC-CCC-CCCCEEEEEEECCCCEEEEEEEEECCCCCCCCC
T ss_conf 64112466285066379668899888886344------8873-757-998068999666895789999998799888983
Q ss_pred EEEEEECC-CCCCCCCCCCCCCCEEEEEECC-CCCEEEEECCCCCCCCCCEEEEEECCCCCC-CEEEEEEEEEEEEECCC
Q ss_conf 69984359-9888433336785438993066-652279960256746655899998089999-83499999999477476
Q 028742 95 KMRVFINR-EGIDFSDAQDMQAIQEWDLVEN-LQGVLEYQTRYSKFQSVANITLHFPDNFGG-DTTQIHYIGLKGEATQL 171 (204)
Q Consensus 95 ~iKlf~N~-~~ldF~~~~~~~p~q~l~l~~~-~~g~~e~~Lk~~KFqnV~sLtifi~~n~g~-~~t~I~yIgl~G~~~~~ 171 (204)
+||||+|| ++|||++|++.+|+|+|+|+++ +.+..+|+||++|||||++|||||++|+|+ |.|+|+||||+|++..
T Consensus 79 ~iKlf~N~~~~ldFd~a~~~~p~Q~~eL~~~~~~~g~~~~Lr~vkFqnV~sLtlf~~~n~~g~e~T~I~~I~l~Ge~~~- 157 (171)
T 1wwy_A 79 YVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQ- 157 (171)
T ss_dssp EEEEEESCSSCCCTTHHHHSCCSSCEECCTTTSSTTCCEECCTTTCTTEEEEEEEECCBTTCCSSCCBCCEEEEEEESS-
T ss_pred EEEEEECCCCCCCHHHHCCCCCCEEEECCCCCCCCCCEEECCCEEECCCCEEEEEEECCCCCCCCEEEEEEEEEEEECC-
T ss_conf 8998554899868002022898558981874467783887140577365789999826889986289999999847467-
Q ss_pred CCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 55503986443299999986655
Q 028742 172 KRDVVATIVYELRPNPSDHKTKS 194 (204)
Q Consensus 172 ~r~~v~~~vYE~~~n~~Dh~~~~ 194 (204)
+ -||.+.|+.+
T Consensus 158 ------~------~~m~~~k~~~ 168 (171)
T 1wwy_A 158 ------A------TNMNDFKSGP 168 (171)
T ss_dssp ------C------CSCCCCCCCC
T ss_pred ------C------CCHHHCCCCC
T ss_conf ------5------1488844588
No 3
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9
Probab=1.00 E-value=1 Score=35.71 Aligned_cols=133 Identities=20% Similarity=0.248 Sum_probs=89.2
Q ss_pred CCCCCCCEEECCCCC---CCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCEEEEEEEEECC---CCCCCCCEE
Q ss_conf 211465269737777---76222200120002899962004999974389920478213779999719---999999169
Q 028742 23 HIDLSKVSALNEAVP---GSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGG---ADGTSPSKM 96 (204)
Q Consensus 23 ~ID~~~v~cLN~~~~---~~~~~i~k~~~~r~d~~~~~l~S~D~D~QLiI~IpF~~~Vkl~sI~I~~~---~~~~~Pk~i 96 (204)
..|+++..++-.... ..+.+++.. +.+.| -+| |.-..=.|.|-|...|.++.|.|..- ++...|++|
T Consensus 21 ~~ei~~~a~w~vSS~k~g~gv~~L~D~-----~~~Ty-WqS-dg~qpH~I~i~f~k~v~i~~l~i~vd~~~DeSYtPs~I 93 (171)
T 1jhj_A 21 VREIGSQAVWSLSSCKPGFGVDQLRDD-----NLETY-WQS-DGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKI 93 (171)
T ss_dssp EEECGGGEEEEESCCBTTBSTHHHHSS-----CTTCC-EEC-CSSSSEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEE
T ss_pred CEECCCCEEEEEEECCCCCCHHHCCCC-----CCCEE-ECC-CCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEE
T ss_conf 267268718999836887795773789-----97811-854-99998499999779936899999987787789796799
Q ss_pred EEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCC--CCCCCCEEEEEECCCC-CCCEEEEEEEEEEEEEC
Q ss_conf 9843599888433336785438993066652279960256--7466558999980899-99834999999994774
Q 028742 97 RVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYS--KFQSVANITLHFPDNF-GGDTTQIHYIGLKGEAT 169 (204)
Q Consensus 97 Klf~N~~~ldF~~~~~~~p~q~l~l~~~~~g~~e~~Lk~~--KFqnV~sLtifi~~n~-g~~~t~I~yIgl~G~~~ 169 (204)
.+++-... . +.....++++.+. .|++.++++-. +.....-|.|.|..|+ +|--|+|..|.++|...
T Consensus 94 ~v~aG~~~---~---dL~ei~~v~l~~p-~Gwv~i~l~~~~~~~~~~~~IQI~I~~nhqnG~DthIR~ikI~G~~~ 162 (171)
T 1jhj_A 94 SVRVGNNF---H---NLQEIRQLELVEP-SGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVE 162 (171)
T ss_dssp EEEEESST---T---SCEEEEEEECSSC-EEEEEEECBCTTSSBEEEEEEEEEEEEEGGGCSSCEECEEEEEEEC-
T ss_pred EEEEECCC---C---CCEEEEEEECCCC-CEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEEEECCC
T ss_conf 99984880---5---2026789990699-88899986268898506899999994367789863888889980389
No 4
>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9
Probab=1.00 E-value=1 Score=33.63 Aligned_cols=135 Identities=18% Similarity=0.237 Sum_probs=89.2
Q ss_pred CCCCCCCCEEECCCCC---CCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCEEEEEEEEECC---CCCCCCCE
Q ss_conf 2211465269737777---76222200120002899962004999974389920478213779999719---99999916
Q 028742 22 KHIDLSKVSALNEAVP---GSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGG---ADGTSPSK 95 (204)
Q Consensus 22 ~~ID~~~v~cLN~~~~---~~~~~i~k~~~~r~d~~~~~l~S~D~D~QLiI~IpF~~~Vkl~sI~I~~~---~~~~~Pk~ 95 (204)
.+.|+.+.-++-.... +.+..++.. +.+.| -|| |--.-=.|.|-|...|.|+.|.|-.. ++...|++
T Consensus 51 ~l~eI~~~A~WsvSS~K~g~gV~~L~D~-----s~~Ty-WQS-DG~qPH~ItI~f~k~v~I~~L~iyvD~~~DeSYtPs~ 123 (221)
T 1gqp_A 51 RMINVTHLALWKPSSFKLGNPVDFALDD-----NYDTF-WQS-DGGQPHQLDIMFSKRMDICVMAIFFSMIADESYAPSL 123 (221)
T ss_dssp SEEECGGGSEEEESCCCTTCCGGGGSSS-----CTTCC-EEC-CSSSSEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEE
T ss_pred CCEECCCCEEEEEECCCCCCCHHHHCCC-----CCCCE-ECC-CCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCEE
T ss_conf 7066147559998448886887885089-----84620-435-8998748999984892679999997777778879779
Q ss_pred EEEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCC----CCCCCCEEEEEECCCCC-CCEEEEEEEEEEEEECC
Q ss_conf 99843599888433336785438993066652279960256----74665589999808999-98349999999947747
Q 028742 96 MRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYS----KFQSVANITLHFPDNFG-GDTTQIHYIGLKGEATQ 170 (204)
Q Consensus 96 iKlf~N~~~ldF~~~~~~~p~q~l~l~~~~~g~~e~~Lk~~----KFqnV~sLtifi~~n~g-~~~t~I~yIgl~G~~~~ 170 (204)
|++.+-...-|. ....++++.+ ..|++.++|+-. .+.....|.|.|..|+. |--|+|..|.++|-...
T Consensus 124 I~V~aG~~~~dL------~e~~~v~l~~-p~GWv~i~l~d~~~~~~~l~~~~IQI~I~~nhqnGrDThIRqIkI~Gp~~~ 196 (221)
T 1gqp_A 124 VKVYAGHSPSDA------RFYKMLEVRN-VNGWVALRFLDNREDDQLLKCQFIRLLFPVNHENGKDTHLRGIRLYVPSNE 196 (221)
T ss_dssp EEEEEESSTTTC------EEEEEEEEEE-CEEEEEECCC--------EEEEEEEEEEEEESTTCSSCEESCEEEEEEC--
T ss_pred EEEEEECCCCCC------EEEEEEEECC-CCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEEECCCCC
T ss_conf 999972896750------4889999069-988999976678777870578899999960137897437777999766876
No 5
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* 4fi9_A
Probab=1.00 E-value=1 Score=29.28 Aligned_cols=113 Identities=14% Similarity=0.218 Sum_probs=72.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCEEEEEEEEECCC--------CCCCCCEEEEEECCCCC----
Q ss_conf 762222001200028999620049999743899204782137799997199--------99999169984359988----
Q 028742 38 GSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGA--------DGTSPSKMRVFINREGI---- 105 (204)
Q Consensus 38 ~~~~~i~k~~~~r~d~~~~~l~S~D~D~QLiI~IpF~~~Vkl~sI~I~~~~--------~~~~Pk~iKlf~N~~~l---- 105 (204)
.++..+|.||. ..... -.......+ +-|-+..++.+.+|.|--.+ -.+|||.+.||.-...-
T Consensus 67 ~~P~~~L~p~~---~pG~C-W~f~g~~g~--l~I~Ls~~I~~~~VtieHi~~~~sp~~~~~SAPKdf~V~g~~~~~~~~~ 140 (198)
T 4dxt_A 67 QSPRVILQPDV---HPGNC-WAFQGPQGF--AVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEG 140 (198)
T ss_dssp CCGGGGGSSCC---STTCS-EEEETTCEE--EEEEEEEEEEEEEEEEECCCGGGSGGGCCTTSBCEEEEEEESSSSCCCC
T ss_pred CCCHHEECCCC---CCCCE-EECCCCCCE--EEEECCCEEEEEEEEEECCCHHCCCCCCCCCCCCEEEEEEECCCCCCCC
T ss_conf 99520674899---97656-502798626--6533287378889999747611165667578995789999737788773
Q ss_pred ----CCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCC-CEEEEEEEEEEEEE
Q ss_conf ----8433336785438993066652279960256746655899998089999-83499999999477
Q 028742 106 ----DFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGG-DTTQIHYIGLKGEA 168 (204)
Q Consensus 106 ----dF~~~~~~~p~q~l~l~~~~~g~~e~~Lk~~KFqnV~sLtifi~~n~g~-~~t~I~yIgl~G~~ 168 (204)
.|.=-.+..+.|+|.|+.. .-.-++.+.|-|.+|+|. +.|-||++.+.|+.
T Consensus 141 ~~Lg~f~Y~~~~~~~QtF~l~~~------------~~~~~~~V~l~i~SN~G~~~~TClYr~RVhG~~ 196 (198)
T 4dxt_A 141 TLLGKFTYDQDGEPIQTFHFQAP------------TMATYQVVELRILTNWGHPEYTCIYRFRVHGEP 196 (198)
T ss_dssp EEEEEEECCTTSCSEEEEECSSC------------CSCCEEEEEEEECCBSSCSSEEEECEEEEEEEC
T ss_pred EEEEEEEECCCCCCCEEEEECCC------------CCCCEEEEEEEEECCCCCCCCEEEEEEEECCEE
T ss_conf 79799998999986258781797------------875166999999777899996899999982786
No 6
>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A
Probab=1.00 E-value=1 Score=21.63 Aligned_cols=109 Identities=9% Similarity=0.082 Sum_probs=65.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEECCCC--CCCCCCCCCC
Q ss_conf 77622220012000289996200499997438992047821377999971999999916998435998--8843333678
Q 028742 37 PGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREG--IDFSDAQDMQ 114 (204)
Q Consensus 37 ~~~~~~i~k~~~~r~d~~~~~l~S~D~D~QLiI~IpF~~~Vkl~sI~I~~~~~~~~Pk~iKlf~N~~~--ldF~~~~~~~ 114 (204)
.+++.++|..- ..+-| .|+...+| -|-|-|.++++|..|.|.. ..++.+++.+.... -+|..+.
T Consensus 26 ~~~~~~~iDg~----~~T~W--~s~g~~pq-~i~I~~~~~~~is~~~i~~----~~~k~~~ie~s~~~~p~~w~~i~--- 91 (139)
T 2yc2_A 26 RFPPENMLDGK----DNTFW--VTTGMFPQ-EFVLRLESCIRVSKITTLS----LNVRKLAVEKCDQDKPDQFEKVF--- 91 (139)
T ss_dssp TSCGGGGGSSC----TTCCE--ECCSSSCE-EEEEEEEEEEEEEEEEEEE----ESEEEEEEEEECSSSCCCCEEEE---
T ss_pred CCCHHHEECCC----CCCEE--ECCCCCCE-EEEEECCCCEEEEEEEEEE----CCCCEEEEEEECCCCCCCEEEEE---
T ss_conf 78914338799----99779--67899783-9999889945887999996----47768999995699987528988---
Q ss_pred CCEEEEEE-CC-CCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEEEE
Q ss_conf 54389930-66-6522799602567466558999980899998349999999947
Q 028742 115 AIQEWDLV-EN-LQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGE 167 (204)
Q Consensus 115 p~q~l~l~-~~-~~g~~e~~Lk~~KFqnV~sLtifi~~n~g~~~t~I~yIgl~G~ 167 (204)
+.++. .+ ......++++.. ++-|-|.|.++++. -+.||.|.+.|+
T Consensus 92 ---~~~f~~~~~~~q~~~f~~~~~----a~~lrl~i~s~~d~-f~~iy~~~v~G~ 138 (139)
T 2yc2_A 92 ---EVELANRGDRLQTEVHQVNIR----AKYLKFILLQGHGE-FATVNRVSVVGG 138 (139)
T ss_dssp ---EEECCCC--CCEEEEEEEEEE----EEEEEEEEEEESSS-CCEEEEEEEEEC
T ss_pred ---EEEEECCCCCCEEEECCCCCC----EEEEEEEEEECCCC-EEEEEEEEEEEC
T ss_conf ---888616899713897048772----89999999703676-699999999956
No 7
>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A
Probab=1.00 E-value=1 Score=19.28 Aligned_cols=112 Identities=15% Similarity=0.123 Sum_probs=64.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEECCCCC--CCCCCCCC
Q ss_conf 7776222200120002899962004999974389920478213779999719999999169984359988--84333367
Q 028742 36 VPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGI--DFSDAQDM 113 (204)
Q Consensus 36 ~~~~~~~i~k~~~~r~d~~~~~l~S~D~D~QLiI~IpF~~~Vkl~sI~I~~~~~~~~Pk~iKlf~N~~~l--dF~~~~~~ 113 (204)
..+++.++|..- ..+-| . |+...+| -|-|-|.++++|..|.|.. ..++.++|++....- +|..+
T Consensus 33 ~~~~~~~~iDgn----~~T~W-~-t~g~~Pq-~i~Idf~k~~~is~~~i~~----~~vk~~~ie~s~d~~p~~w~~i--- 98 (153)
T 1tvg_A 33 EKHPPENIIDGN----PETFW-T-TTGMFPQ-EFIICFHKHVRIERLVIQS----YFVQTLKIEKSTSKEPVDFEQW--- 98 (153)
T ss_dssp TTSCGGGGGSSC----TTCCE-E-CCSCSSE-EEEEEEEEEEEEEEEEEEE----ESEEEEEEEEECSSSSCCCEEE---
T ss_pred CCCCHHHCCCCC----CCCEE-E-CCCCCCC-EEEEECCCCEEEEEEEEEE----CCCEEEEEEEECCCCCCCEEEE---
T ss_conf 666877707699----88568-8-7999882-8999989955897999996----5878999999779997652896---
Q ss_pred CCCEEEEEECC--CCCEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEEEEEC
Q ss_conf 85438993066--652279960256746655899998089999834999999994774
Q 028742 114 QAIQEWDLVEN--LQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEAT 169 (204)
Q Consensus 114 ~p~q~l~l~~~--~~g~~e~~Lk~~KFqnV~sLtifi~~n~g~~~t~I~yIgl~G~~~ 169 (204)
-+.++... ......+++ . ..++-|-|-|.++.+. -.+||.|.+.|+..
T Consensus 99 ---~e~ef~~~~n~~Q~~~~~~-~---~~a~~lRl~i~s~~d~-fv~Iy~l~v~G~~~ 148 (153)
T 1tvg_A 99 ---IEKDLVHTEGQLQNEEIVA-H---GSATYLRFIIVSAFDH-FASVHSVSAEGTVV 148 (153)
T ss_dssp ---EEEECCCCTTCCEEEEECC-C---EEEEEEEEEEEEESSS-CCEEEEEEEEEEEE
T ss_pred ---EEEEECCCCCCEEEEECCC-C---CEEEEEEEEEECCCCC-EEEEEEEEEEEEEC
T ss_conf ---7888127789689997578-8---4468999999812036-89999999998871
No 8
>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A*
Probab=1.00 E-value=1 Score=16.57 Aligned_cols=102 Identities=13% Similarity=0.156 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCC---C-CCCCCCCCCCCCCCCCEEECCCCC----CCCCCCCCCCCCCCCCCCCCEECCCC----CCCEE
Q ss_conf 988899999887---8-877554322211465269737777----76222200120002899962004999----97438
Q 028742 1 MACLHDHSCEDH---D-CSSDWSLYKHIDLSKVSALNEAVP----GSVKSVFKAWEQRLNSSGEHLESNDG----DPELL 68 (204)
Q Consensus 1 ~~~~h~~~c~~~---~-~~~~~~L~~~ID~~~v~cLN~~~~----~~~~~i~k~~~~r~d~~~~~l~S~D~----D~QLi 68 (204)
|++.|.|.++.+ . .+....+++.-.++ +++-.+... +.+.+++.. +...+ -.| +. ....-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~wt-vtAsS~~~~~~~~~~~~~a~DG-----~~~T~-W~s-~~~~~~~~p~~ 72 (161)
T 4a41_A 1 MGSSHHHHHHSSGLVPRGSHMASALPQGNMK-ATATSEHPDVGNEGLAKFAIDG-----KENTI-WHT-KYNPVEELPQS 72 (161)
T ss_dssp ----------------------CBCCGGGCE-EEESCCCCCSSSCCCGGGGGSS-----CTTCC-EEC-CTTTTCCSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE-EEEECCCCCCCCCCCHHHCCCC-----CCCCE-EEE-CCCCCCCCCEE
T ss_conf 9755444223467424897556613803789-9981357898888848975869-----99980-992-88788999979
Q ss_pred EEEECCCCEEEEEEEEECCCC--CCCCCEEEEEECCCCCCCCCC
Q ss_conf 992047821377999971999--999916998435998884333
Q 028742 69 VYIPFTTDVKIKSISIVGGAD--GTSPSKMRVFINREGIDFSDA 110 (204)
Q Consensus 69 I~IpF~~~Vkl~sI~I~~~~~--~~~Pk~iKlf~N~~~ldF~~~ 110 (204)
|.|-|.++.+|.+|.+....+ ...|+..+|++-...-.|..+
T Consensus 73 i~iDLg~~~~I~~v~~~~r~~~~~~~~~~y~I~~S~DG~~W~~v 116 (161)
T 4a41_A 73 ITLELGGSYEINKFTYLPRSGAKNGNITKYELHVSEDGNNFRKI 116 (161)
T ss_dssp EEEEEEEEEEEEEEEEECCSSCCTTCEEEEEEEEESSSSCEEEE
T ss_pred EEEECCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEE
T ss_conf 99986997798189998367899996799999998798851895
No 9
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=1.00 E-value=1 Score=16.44 Aligned_cols=35 Identities=26% Similarity=0.597 Sum_probs=26.0
Q ss_pred EECCCCCC----CEEEEEECCCCEEEEEEEEECCCCCCC
Q ss_conf 00499997----438992047821377999971999999
Q 028742 58 LESNDGDP----ELLVYIPFTTDVKIKSISIVGGADGTS 92 (204)
Q Consensus 58 l~S~D~D~----QLiI~IpF~~~Vkl~sI~I~~~~~~~~ 92 (204)
+++...|+ |+|.|+|....=+.+.++|.++.++..
T Consensus 59 ~q~te~De~~YhE~l~h~~l~~~p~pk~VLIiGgGdG~~ 97 (294)
T 3o4f_A 59 VQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAM 97 (294)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHSSCCCEEEEESCTTSHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHH
T ss_conf 240146678999999889986289977699988894699
No 10
>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A
Probab=1.00 E-value=1 Score=14.42 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=33.4
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEECCCCCC-CCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEE
Q ss_conf 988899999887-88775543222114652697377777-622220012000289996200499997438992
Q 028742 1 MACLHDHSCEDH-DCSSDWSLYKHIDLSKVSALNEAVPG-SVKSVFKAWEQRLNSSGEHLESNDGDPELLVYI 71 (204)
Q Consensus 1 ~~~~h~~~c~~~-~~~~~~~L~~~ID~~~v~cLN~~~~~-~~~~i~k~~~~r~d~~~~~l~S~D~D~QLiI~I 71 (204)
|++.|.|.++.+ -.....+||+..=...+-.|+..-.. .+..++..- .+ +++.|.+..+.++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~di~s~Ll~~Riifl~~~I~d~~a~~iiaqL-------l~-L~~ed~~k~I~lyI 65 (205)
T 4gm2_A 1 MGSSHHHHHHSSGRENLYFQGPSLLLSKRIIFLSSPIYPHISEQIISQL-------LY-LEYESKRKPIHLYI 65 (205)
T ss_dssp ---------------------CHHHHTTTEEEECSCCCHHHHHHHHHHH-------HH-HHHHCTTCCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEECCEECHHHHHHHHHHH-------HH-HHHCCCCCCEEEEE
T ss_conf 9866554223468888876888887218889989887689999999999-------99-87449999889999
Done!