BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028743
(204 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|118489878|gb|ABK96737.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 275
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/204 (88%), Positives = 191/204 (93%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
MVGDRGFDP LGKP EYLQ+D DSLDQNLAKN G+++GV D+ E++PTP QPY+EVF
Sbjct: 72 MVGDRGFDPFALGKPAEYLQFDLDSLDQNLAKNLAGDVIGVRVDATEVKPTPFQPYSEVF 131
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVEL+EGSSYLGQPLPFSLTTL
Sbjct: 132 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELIEGSSYLGQPLPFSLTTL 191
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVA 180
IWIEVIVIGYIE+QRNAELDP KRLYPGGYFDPLGLASDP K+ENLQLAEIKHARLAMVA
Sbjct: 192 IWIEVIVIGYIEFQRNAELDPEKRLYPGGYFDPLGLASDPEKIENLQLAEIKHARLAMVA 251
Query: 181 FLIFGIQAAFTGKGPISFVATFNQ 204
FLIFGIQAAFTGKGPISFVATFN
Sbjct: 252 FLIFGIQAAFTGKGPISFVATFNN 275
>gi|224101127|ref|XP_002312153.1| light-harvesting complex II protein Lhcb8 [Populus trichocarpa]
gi|222851973|gb|EEE89520.1| light-harvesting complex II protein Lhcb8 [Populus trichocarpa]
Length = 275
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/204 (87%), Positives = 191/204 (93%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
MVGDRGFDP LGKP EYLQ+D DSLDQNLAKN G+++GV D+ E++PTP QPY+EVF
Sbjct: 72 MVGDRGFDPFALGKPAEYLQFDLDSLDQNLAKNLAGDVIGVRVDATEVKPTPFQPYSEVF 131
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVEL+EGSSYLGQPLPFSLTTL
Sbjct: 132 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELIEGSSYLGQPLPFSLTTL 191
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVA 180
IWIEVIV+GYIE+QRNAELDP KRLYPGGYFDPLGLASDP K+ENLQLAEIKHARLAMVA
Sbjct: 192 IWIEVIVVGYIEFQRNAELDPEKRLYPGGYFDPLGLASDPEKIENLQLAEIKHARLAMVA 251
Query: 181 FLIFGIQAAFTGKGPISFVATFNQ 204
FLIFGIQAAFTGKGPISFVATFN
Sbjct: 252 FLIFGIQAAFTGKGPISFVATFNN 275
>gi|312281687|dbj|BAJ33709.1| unnamed protein product [Thellungiella halophila]
Length = 276
Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/204 (85%), Positives = 190/204 (93%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
M+GDRGFDP GLGKP EYLQYDFD LDQNLAKN GE++G+I DS E+ PTP QPYTEVF
Sbjct: 73 MIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGEVIGIIQDSSEINPTPFQPYTEVF 132
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
G+QRFRECELIHGRWAMLGTLGAIAVEALTG+AWQDAGKVELVEGSSYLGQPLPFSLTTL
Sbjct: 133 GIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTL 192
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVA 180
IWIEV+V+GYIE+QRNAELDP KR+YPGGYFDPLGL SDP KL+ L+LAEIKH+RLAMVA
Sbjct: 193 IWIEVLVVGYIEFQRNAELDPEKRIYPGGYFDPLGLGSDPEKLDTLKLAEIKHSRLAMVA 252
Query: 181 FLIFGIQAAFTGKGPISFVATFNQ 204
FLIFG+QAAFTGKGPISF+ATFN
Sbjct: 253 FLIFGLQAAFTGKGPISFIATFNN 276
>gi|255571917|ref|XP_002526901.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223533800|gb|EEF35532.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 282
Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 175/204 (85%), Positives = 191/204 (93%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
MVGDRGFDP GLGKP EYLQ++ DSLDQNLAKN G+++GV + E++PTP QPY+EVF
Sbjct: 79 MVGDRGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGVRVEPNEVKPTPFQPYSEVF 138
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECE+IHGRWAMLGTLGA+AVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL
Sbjct: 139 GLQRFRECEVIHGRWAMLGTLGALAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 198
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVA 180
IWIEV+VIGYIE+QRNAELDP KR+YPGGYFDPLGLASDP K ENLQLAEIKH+RLAMVA
Sbjct: 199 IWIEVLVIGYIEFQRNAELDPEKRIYPGGYFDPLGLASDPEKKENLQLAEIKHSRLAMVA 258
Query: 181 FLIFGIQAAFTGKGPISFVATFNQ 204
FLIFGIQAAFTGKGPI+FVATFNQ
Sbjct: 259 FLIFGIQAAFTGKGPIAFVATFNQ 282
>gi|297823921|ref|XP_002879843.1| LHCB4.3 [Arabidopsis lyrata subsp. lyrata]
gi|297325682|gb|EFH56102.1| LHCB4.3 [Arabidopsis lyrata subsp. lyrata]
Length = 276
Score = 364 bits (935), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 171/204 (83%), Positives = 191/204 (93%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
M+GDRGFDP GLGKP EYLQYDFD LDQNLAKN G+++G+I DS E++PTP QPYTEVF
Sbjct: 73 MIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQDSSEIKPTPFQPYTEVF 132
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
G+QRFRECELIHGRWAMLGTLGAIAVEALTG+AWQDAGKVELVEGSSYLGQPLPFSLTTL
Sbjct: 133 GIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTL 192
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVA 180
IWIEV+V+GYIE+QRN+ELDP KR+YPGGYFDPLGLA+DP KL+ L+LAEIKH+RLAMVA
Sbjct: 193 IWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVA 252
Query: 181 FLIFGIQAAFTGKGPISFVATFNQ 204
FLIF +QAAFTGKGPISF+ATFN
Sbjct: 253 FLIFALQAAFTGKGPISFLATFNN 276
>gi|15225630|ref|NP_181539.1| chlorophyll a-b binding protein CP29.3 [Arabidopsis thaliana]
gi|38503231|sp|Q9S7W1.1|CB4C_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.3,
chloroplastic; AltName: Full=LHCB4.3; AltName:
Full=LHCII protein 4.3; Flags: Precursor
gi|4741956|gb|AAD28775.1|AF134128_1 Lhcb4:3 protein [Arabidopsis thaliana]
gi|17979325|gb|AAL49888.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|20465761|gb|AAM20369.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330254684|gb|AEC09778.1| chlorophyll a-b binding protein CP29.3 [Arabidopsis thaliana]
Length = 276
Score = 362 bits (930), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 169/204 (82%), Positives = 191/204 (93%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
M+GDRGFDP GLGKP EYLQYDFD LDQNLAKN G+++G+I +S E++PTP QPYTEVF
Sbjct: 73 MIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVF 132
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
G+QRFRECELIHGRWAMLGTLGAIAVEALTG+AWQDAGKVELVEGSSYLGQPLPFSLTTL
Sbjct: 133 GIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTL 192
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVA 180
IWIEV+V+GYIE+QRN+ELDP KR+YPGGYFDPLGLA+DP KL+ L+LAEIKH+RLAMVA
Sbjct: 193 IWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVA 252
Query: 181 FLIFGIQAAFTGKGPISFVATFNQ 204
FLIF +QAAFTGKGP+SF+ATFN
Sbjct: 253 FLIFALQAAFTGKGPVSFLATFNN 276
>gi|21594018|gb|AAM65936.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
Length = 276
Score = 356 bits (914), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 167/204 (81%), Positives = 189/204 (92%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
M+GDRGFDP GLGKP EYLQYD LDQNLAKN G+++G+I +S E++PTP QPYTEVF
Sbjct: 73 MIGDRGFDPFGLGKPAEYLQYDXXGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVF 132
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
G+QRFRECELIHGRWAMLGTLGAIAVEALTG+AWQDAGKVELVEGSSYLGQPLPFSLTTL
Sbjct: 133 GIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTL 192
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVA 180
IWIEV+V+GYIE+QRN+ELDP KR+YPGGYFDPLGLA+DP KL+ L+LAEIKH+RLAMVA
Sbjct: 193 IWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVA 252
Query: 181 FLIFGIQAAFTGKGPISFVATFNQ 204
FLIF +QAAFTGKGP+SF+ATFN
Sbjct: 253 FLIFALQAAFTGKGPVSFLATFNN 276
>gi|380504948|gb|AFD62761.1| LHCB, partial [Citrus sinensis]
Length = 169
Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 36 GELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQ 95
GELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQ
Sbjct: 1 GELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQ 60
Query: 96 DAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLG 155
DAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLG
Sbjct: 61 DAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLG 120
Query: 156 LASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ 204
LASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ
Sbjct: 121 LASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ 169
>gi|356539957|ref|XP_003538459.1| PREDICTED: chlorophyll a-b binding protein CP29.3,
chloroplastic-like [Glycine max]
Length = 282
Score = 338 bits (868), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 163/205 (79%), Positives = 182/205 (88%), Gaps = 1/205 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
M+GDRGFDP G KP EYLQ+D DSLDQNLAKN G+++G + E++PTP QPY+EVF
Sbjct: 78 MIGDRGFDPFGFAKPAEYLQFDLDSLDQNLAKNIAGDVIGTRVEVAEVKPTPFQPYSEVF 137
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
G+QRFRECELIHGRWAMLG+LGA+AVEALTGVAWQDAGKVELVEGSSYLG PLPFSLTTL
Sbjct: 138 GIQRFRECELIHGRWAMLGSLGALAVEALTGVAWQDAGKVELVEGSSYLGLPLPFSLTTL 197
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEVIVIGYIE+QRNAELDP KRLYPGG +FDPLGLA+DP + LQLAEIKH+RLAMV
Sbjct: 198 IWIEVIVIGYIEFQRNAELDPEKRLYPGGRFFDPLGLANDPEEKARLQLAEIKHSRLAMV 257
Query: 180 AFLIFGIQAAFTGKGPISFVATFNQ 204
FLIF IQAA TGKGPISF+ATFN+
Sbjct: 258 VFLIFAIQAAVTGKGPISFLATFNK 282
>gi|357461189|ref|XP_003600876.1| Chlorophyll a-b binding protein CP29.3 [Medicago truncatula]
gi|355489924|gb|AES71127.1| Chlorophyll a-b binding protein CP29.3 [Medicago truncatula]
Length = 278
Score = 336 bits (862), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 161/205 (78%), Positives = 180/205 (87%), Gaps = 1/205 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
M+GDRGFDPLGL KP EYLQ+D DSLDQNLAKN G+++G +S ++ PTP QPYTEVF
Sbjct: 74 MIGDRGFDPLGLAKPVEYLQFDLDSLDQNLAKNLAGDIIGTRVESTDVNPTPFQPYTEVF 133
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
G+QRFRECE+IHGRWAMLG LGA+AVEA TGVAWQDAGKVELVEGSSY G LPFS++TL
Sbjct: 134 GIQRFRECEVIHGRWAMLGALGALAVEAFTGVAWQDAGKVELVEGSSYFGFSLPFSISTL 193
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRNAELDP KRLYPGG +FDPLGLASDP + E LQLAEIKH+RLAMV
Sbjct: 194 IWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLASDPEEKERLQLAEIKHSRLAMV 253
Query: 180 AFLIFGIQAAFTGKGPISFVATFNQ 204
FLIF IQAA TGKGPI F+ATFNQ
Sbjct: 254 VFLIFAIQAAVTGKGPIGFIATFNQ 278
>gi|356568441|ref|XP_003552419.1| PREDICTED: chlorophyll a-b binding protein CP29.3,
chloroplastic-like [Glycine max]
Length = 278
Score = 335 bits (860), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 161/205 (78%), Positives = 180/205 (87%), Gaps = 1/205 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
M+GDRGFDP G KP EYLQ+D DSLDQNLAKN G+++G + +++PTP QPY+EVF
Sbjct: 74 MIGDRGFDPFGFAKPAEYLQFDLDSLDQNLAKNVAGDVIGTRVEVADVKPTPFQPYSEVF 133
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
G+QRFRECELIHGRWAMLG LGA+ VEALTGVAWQDAGKVELVEGSSYLG PLPFSLTTL
Sbjct: 134 GIQRFRECELIHGRWAMLGALGALVVEALTGVAWQDAGKVELVEGSSYLGLPLPFSLTTL 193
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEVIVIGYIE+QRNAELDP KRLYPGG +FDPLGLA+DP + LQLAEIKH+RLAMV
Sbjct: 194 IWIEVIVIGYIEFQRNAELDPEKRLYPGGRFFDPLGLANDPEEKARLQLAEIKHSRLAMV 253
Query: 180 AFLIFGIQAAFTGKGPISFVATFNQ 204
FLIF IQAA TGKGPISF+ATFN+
Sbjct: 254 VFLIFAIQAAVTGKGPISFLATFNK 278
>gi|115472753|ref|NP_001059975.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|3075488|gb|AAC14566.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|34394009|dbj|BAC84033.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|113611511|dbj|BAF21889.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|125558786|gb|EAZ04322.1| hypothetical protein OsI_26463 [Oryza sativa Indica Group]
gi|215704418|dbj|BAG93852.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737393|dbj|BAG96322.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737709|dbj|BAG96839.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764955|dbj|BAG86652.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767447|dbj|BAG99675.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 290
Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 159/202 (78%), Positives = 179/202 (88%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ++ DSLDQNLAKN+ GE++G ++GE++ TP QPYTEVF
Sbjct: 71 LVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGEIIGTRFETGEVKSTPFQPYTEVF 130
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TL
Sbjct: 131 GLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTL 190
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRNAELDP KRLYPGG YFDPLGLASDP K E LQLAEIKHARLAMV
Sbjct: 191 IWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMV 250
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
AFL F +QAA TGKGP++ AT
Sbjct: 251 AFLGFAVQAAATGKGPLNNWAT 272
>gi|226358411|gb|ACO51068.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 285
Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 158/202 (78%), Positives = 175/202 (86%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQYD DSLDQNLAKN GE++G T+ +++ TP QPY+EVF
Sbjct: 68 LVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNMAGEIIGTRTEVADVKATPFQPYSEVF 127
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA+ VE LTGV WQDAGKVELVEGSSYLGQPLPFS+TTL
Sbjct: 128 GLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSMTTL 187
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIG+IE+QRNAELDP KRLYPGG YFDPLGLA+DP K LQLAEIKHARLAMV
Sbjct: 188 IWIEVLVIGFIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMV 247
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
AFL F +QAA TGKGP++ AT
Sbjct: 248 AFLGFAVQAAATGKGPLNNWAT 269
>gi|449460307|ref|XP_004147887.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
gi|449516143|ref|XP_004165107.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
Length = 284
Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 159/202 (78%), Positives = 175/202 (86%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQYD DSLDQNLAKN G+++G +S E++ TP QPYTEVF
Sbjct: 67 LVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQPYTEVF 126
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELVEGSSYLGQPLPFS+TTL
Sbjct: 127 GLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTL 186
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRNAELDP KRLYPGG +FDPLGLA DP K LQLAEIKHARLAMV
Sbjct: 187 IWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMV 246
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
AFL F +QAA TGKGP++ AT
Sbjct: 247 AFLGFAVQAAVTGKGPLNNWAT 268
>gi|225440674|ref|XP_002279834.1| PREDICTED: chlorophyll a-b binding protein CP29.2, chloroplastic
[Vitis vinifera]
gi|147784938|emb|CAN77492.1| hypothetical protein VITISV_010727 [Vitis vinifera]
Length = 288
Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 157/202 (77%), Positives = 177/202 (87%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQYD+DSLDQNLAKN G+++G + GE++ TP QPYTEVF
Sbjct: 70 LVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNIAGDVIGTRFEGGEVKSTPFQPYTEVF 129
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA+AVE+LTGV WQDAGKVEL+EGSSYLGQPLPFS+TTL
Sbjct: 130 GLQRFRECELIHGRWAMLATLGALAVESLTGVTWQDAGKVELIEGSSYLGQPLPFSMTTL 189
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRNAELDP KRLYPGG +FDPLGLA+DP K LQLAEIKHARLAM+
Sbjct: 190 IWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEKKAVLQLAEIKHARLAMI 249
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
FL F +QAA TGKGP++ AT
Sbjct: 250 GFLGFAVQAAVTGKGPLNNWAT 271
>gi|162458005|ref|NP_001105502.1| photosystem II subunit29 [Zea mays]
gi|2326947|emb|CAA90681.1| Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
gi|195639374|gb|ACG39155.1| hypothetical protein [Zea mays]
gi|414887094|tpg|DAA63108.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 1 [Zea
mays]
gi|414887095|tpg|DAA63109.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 2 [Zea
mays]
Length = 291
Score = 322 bits (825), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 157/202 (77%), Positives = 178/202 (88%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ++ DSLDQNLAKN+ G ++G +S E++ TPLQPY+EVF
Sbjct: 72 LVGDYGFDPFGLGKPVEYLQFELDSLDQNLAKNEAGGIIGTRFESSEVKSTPLQPYSEVF 131
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TL
Sbjct: 132 GLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTL 191
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRNAELDP KRLYPGG YFDPLGLA+DP K E LQLAEIKHARLAMV
Sbjct: 192 IWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMV 251
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
AFL F +QAA TGKGP++ AT
Sbjct: 252 AFLGFAVQAAATGKGPLNNWAT 273
>gi|346987811|gb|AEO51756.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 286
Score = 322 bits (824), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 156/202 (77%), Positives = 175/202 (86%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQYD DSLDQNLAKN G+++G +S E++ TP QPYTEVF
Sbjct: 69 LVGDYGFDPFGLGKPVEYLQYDLDSLDQNLAKNMAGDIIGTRVESSEVKSTPFQPYTEVF 128
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELVEGSSYLGQPLPFS++TL
Sbjct: 129 GLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTL 188
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV++IGYIE+QRNAELDP KRLYPGG +FDPLGLA+DP K LQLAEIKHARLAMV
Sbjct: 189 IWIEVLLIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMV 248
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
FL F +QAA TGKGP++ AT
Sbjct: 249 GFLGFAVQAAVTGKGPLNNWAT 270
>gi|160713961|gb|ABX47016.1| chloroplast chlorophyll a/b binding protein cab-PhE7 [Phyllostachys
edulis]
Length = 287
Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 157/202 (77%), Positives = 176/202 (87%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ++ DSLDQNLAKND G+++G + GE++ TP QPYTEVF
Sbjct: 68 LVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNDAGDIIGTRFEPGEVKSTPFQPYTEVF 127
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELV+GSSYLGQPLPFS+TTL
Sbjct: 128 GLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSMTTL 187
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV++IGYIE+QRNAELD KRLYPGG YFDPLGLASDP K E LQLAEIKHARLAMV
Sbjct: 188 IWIEVLLIGYIEFQRNAELDSEKRLYPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMV 247
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
FL F +QAA TGKGP++ AT
Sbjct: 248 GFLGFAVQAAATGKGPLNNWAT 269
>gi|159147191|gb|ABW90990.1| LHCB4 [Bambusa oldhamii]
Length = 287
Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 158/202 (78%), Positives = 175/202 (86%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP+GLGKP EYLQYD DSLDQNLAKN G+++G + GE++ TP QPYTEVF
Sbjct: 68 LVGDYGFDPIGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFEPGEVKSTPFQPYTEVF 127
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVEL GSSYLGQPLPFS+TTL
Sbjct: 128 GLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELENGSSYLGQPLPFSMTTL 187
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV++IGYIE+QRNAELDP KRLYPGG YFDPLGLASDP K E LQLAEIKHARLAMV
Sbjct: 188 IWIEVLLIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMV 247
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
FL F +QAA TGKGP++ AT
Sbjct: 248 GFLGFAVQAAATGKGPLNNWAT 269
>gi|4689382|gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [Vigna radiata]
Length = 290
Score = 321 bits (822), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 156/202 (77%), Positives = 175/202 (86%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ++ DSLDQNLAKN+ G ++G T+ +++ TP QPY+EVF
Sbjct: 71 LVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNEAGIIIGTRTEVADVKSTPFQPYSEVF 130
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELVEGSSYLGQPLPFS+TTL
Sbjct: 131 GLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTL 190
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRNAELDP KRLYPGG YFDPLGLASDP K LQLAEIKHARLAMV
Sbjct: 191 IWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMV 250
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
FL F +QAA TGKGP++ AT
Sbjct: 251 GFLGFAVQAAATGKGPLNNWAT 272
>gi|242050544|ref|XP_002463016.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
gi|241926393|gb|EER99537.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
Length = 288
Score = 321 bits (822), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 157/202 (77%), Positives = 178/202 (88%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ+D DSLDQNLAKN+ G ++G +S +++ TPLQPY+EVF
Sbjct: 69 LVGDYGFDPFGLGKPVEYLQFDLDSLDQNLAKNEPGVVIGTRFESSDVKSTPLQPYSEVF 128
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TL
Sbjct: 129 GLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTL 188
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRNAELDP KRLYPGG YFDPLGLA+DP K E LQLAEIKHARLAMV
Sbjct: 189 IWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMV 248
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
AFL F +QAA TGKGP++ AT
Sbjct: 249 AFLGFAVQAAATGKGPLNNWAT 270
>gi|356496185|ref|XP_003516950.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 319 bits (817), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 156/202 (77%), Positives = 174/202 (86%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ++ DSLDQNLAKN G+++G T+ +++ TP QPY+EVF
Sbjct: 71 LVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKSTPFQPYSEVF 130
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA+ VE LTGV WQDAGKVELVEGSSYLGQPLPFS+TTL
Sbjct: 131 GLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTL 190
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRNAELDP KRLYPGG YFDPLGLASDP K LQLAEIKHARLAMV
Sbjct: 191 IWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMV 250
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
FL F +QAA TGKGP++ AT
Sbjct: 251 GFLGFAVQAAATGKGPLNNWAT 272
>gi|356503628|ref|XP_003520609.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 319 bits (817), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 156/202 (77%), Positives = 174/202 (86%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ++ DSLDQNLAKN G+++G T+ +++ TP QPY+EVF
Sbjct: 71 LVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKSTPFQPYSEVF 130
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA+ VE LTGV WQDAGKVELVEGSSYLGQPLPFS+TTL
Sbjct: 131 GLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTL 190
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRNAELDP KRLYPGG YFDPLGLASDP K LQLAEIKHARLAMV
Sbjct: 191 IWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMV 250
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
FL F +QAA TGKGP++ AT
Sbjct: 251 GFLGFAVQAAATGKGPLNNWAT 272
>gi|357468737|ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355505708|gb|AES86850.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 347
Score = 319 bits (817), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 155/202 (76%), Positives = 174/202 (86%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ+D DSLDQNLAKN G+++G T+ +++ TP QPY+EVF
Sbjct: 129 LVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFADVKSTPFQPYSEVF 188
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA+ VE LTGV WQDAGKVELVEGS+YLGQPLPFS+TTL
Sbjct: 189 GLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSTYLGQPLPFSITTL 248
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRNAELD KRLYPGG +FDPLGLASDP K LQLAEIKHARLAMV
Sbjct: 249 IWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMV 308
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
AFL F +QAA TGKGP++ AT
Sbjct: 309 AFLGFAVQAAATGKGPLNNWAT 330
>gi|255574383|ref|XP_002528105.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223532494|gb|EEF34284.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 285
Score = 318 bits (816), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 154/202 (76%), Positives = 175/202 (86%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ++ DSLDQNLAKN G+++G T++ +++ TP QPY+EVF
Sbjct: 68 LVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNIAGDIIGTRTEAADVKSTPFQPYSEVF 127
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA+ VE LTGV WQDAGKVELVEGSSYLGQPLPFS+TTL
Sbjct: 128 GLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTL 187
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRN+ELDP KRLYPGG +FDPLGLA DP K LQLAEIKHARLAMV
Sbjct: 188 IWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAEDPEKKATLQLAEIKHARLAMV 247
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
AFL F +QAA TGKGP++ AT
Sbjct: 248 AFLGFAVQAAVTGKGPLNNWAT 269
>gi|255639053|gb|ACU19827.1| unknown [Glycine max]
Length = 290
Score = 318 bits (815), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 155/202 (76%), Positives = 173/202 (85%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ++ DSLDQNLAKN G+++G T+ +++ TP QPY+EVF
Sbjct: 71 LVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKSTPFQPYSEVF 130
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA+ VE LTGV WQDAGKVELVEGSSYLGQPLPFS+TTL
Sbjct: 131 GLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTL 190
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIE +VIGYIE+QRNAELDP KRLYPGG YFDPLGLASDP K LQLAEIKHARLAMV
Sbjct: 191 IWIEALVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMV 250
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
FL F +QAA TGKGP++ AT
Sbjct: 251 GFLGFAVQAAVTGKGPLNNWAT 272
>gi|217072728|gb|ACJ84724.1| unknown [Medicago truncatula]
gi|388501002|gb|AFK38567.1| unknown [Medicago truncatula]
Length = 289
Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 155/202 (76%), Positives = 174/202 (86%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ+D DSLDQNLAKN G+++G T+ +++ TP QPY+EVF
Sbjct: 71 LVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFADVKSTPFQPYSEVF 130
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA+ VE LTGV WQDAGKVELVEGS+YLGQPLPFS+TTL
Sbjct: 131 GLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSTYLGQPLPFSITTL 190
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRNAELD KRLYPGG +FDPLGLASDP K LQLAEIKHARLAMV
Sbjct: 191 IWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMV 250
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
AFL F +QAA TGKGP++ AT
Sbjct: 251 AFLGFAVQAAATGKGPLNNWAT 272
>gi|322812534|pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 317 bits (811), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 152/197 (77%), Positives = 171/197 (86%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQYD+D LDQNLAKN G+++G T+S +++ T LQPY+EVF
Sbjct: 28 LVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVF 87
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA+ VE LTG+ WQDAGKVEL+EGSSYLGQPLPFS+TTL
Sbjct: 88 GLQRFRECELIHGRWAMLATLGALTVEGLTGITWQDAGKVELIEGSSYLGQPLPFSMTTL 147
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVA 180
IWIEV+VIGYIE+QRNAELD KRLYPGG FDPLGLASDP K LQLAEIKHARLAMV
Sbjct: 148 IWIEVLVIGYIEFQRNAELDTEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVG 207
Query: 181 FLIFGIQAAFTGKGPIS 197
FL F +QAA TGKGP++
Sbjct: 208 FLGFAVQAAVTGKGPLN 224
>gi|219362417|ref|NP_001136606.1| uncharacterized protein LOC100216729 [Zea mays]
gi|194696340|gb|ACF82254.1| unknown [Zea mays]
Length = 291
Score = 317 bits (811), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 154/202 (76%), Positives = 176/202 (87%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ++ DSLDQNLAKN+ G ++G +S +++ TPLQPY+EVF
Sbjct: 72 LVGDYGFDPFGLGKPVEYLQFELDSLDQNLAKNEAGGIIGTRFESSDVKSTPLQPYSEVF 131
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA+ VE LTGV WQDAGKVELV+GSSYLGQPLPF+++TL
Sbjct: 132 GLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVDGSSYLGQPLPFTISTL 191
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRNAELDP KRLYPGG YFDPL LA+DP K E LQLAEIKHARLAMV
Sbjct: 192 IWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLALAADPEKKERLQLAEIKHARLAMV 251
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
AFL F +QAA TGKGP++ AT
Sbjct: 252 AFLGFAVQAAATGKGPLNNWAT 273
>gi|357122377|ref|XP_003562892.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Brachypodium distachyon]
Length = 288
Score = 316 bits (810), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 156/202 (77%), Positives = 174/202 (86%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQYD DSLDQNLA+N GE++G + +++ TPLQPY EVF
Sbjct: 71 LVGDYGFDPFGLGKPAEYLQYDPDSLDQNLAQNLAGEVIGTRFEDADIKSTPLQPYAEVF 130
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA+ VE LTGV WQDAGKVELV+GSSYLGQPLPF++TTL
Sbjct: 131 GLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVDGSSYLGQPLPFTITTL 190
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRNAELDP KRLYPGG YFDPLGLA+DP K E LQLAEIKHARLAMV
Sbjct: 191 IWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMV 250
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
FL F +QAA TGKGP++ AT
Sbjct: 251 GFLGFAVQAAATGKGPLNNWAT 272
>gi|297810243|ref|XP_002873005.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
gi|297318842|gb|EFH49264.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 315 bits (807), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 152/202 (75%), Positives = 175/202 (86%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ+D DSLDQNLAKN G+++G T++ + + TP QPY+EVF
Sbjct: 73 LVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVF 132
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
G+QRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TL
Sbjct: 133 GIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTL 192
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+V+GYIE+QRNAELD KRLYPGG YFDPLGLA+DP K LQLAEIKHARLAMV
Sbjct: 193 IWIEVLVVGYIEFQRNAELDSEKRLYPGGKYFDPLGLAADPEKRAQLQLAEIKHARLAMV 252
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
AFL F +QAA TGKGP++ AT
Sbjct: 253 AFLGFAVQAAATGKGPLNNWAT 274
>gi|15081739|gb|AAK82524.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
Length = 290
Score = 315 bits (806), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 152/202 (75%), Positives = 175/202 (86%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ+D DSLDQNLAKN G+++G T++ + + TP QPY+EVF
Sbjct: 72 LVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVF 131
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
G+QRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TL
Sbjct: 132 GIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTL 191
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRNAELD KRLYPGG +FDPLGLA+DP K LQLAEIKHARLAMV
Sbjct: 192 IWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMV 251
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
AFL F +QAA TGKGP ++ AT
Sbjct: 252 AFLGFAVQAAATGKGPRNYWAT 273
>gi|15231990|ref|NP_187506.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
gi|38503262|sp|Q9XF88.1|CB4B_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.2,
chloroplastic; AltName: Full=LHCB4.2; AltName:
Full=LHCII protein 4.2; Flags: Precursor
gi|4741954|gb|AAD28774.1|AF134127_1 Lhcb4.2 protein [Arabidopsis thaliana]
gi|6403491|gb|AAF07831.1|AC010871_7 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17473745|gb|AAL38316.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148559|gb|AAM10170.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332641177|gb|AEE74698.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
Length = 287
Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 155/202 (76%), Positives = 173/202 (85%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ+D DSLDQNLAKN GE++G T++ + + TP QPY+EVF
Sbjct: 69 LVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVF 128
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGAI VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TL
Sbjct: 129 GLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTL 188
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRNAELD KRLYPGG +FDPLGLASDP K LQLAEIKHARLAMV
Sbjct: 189 IWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMV 248
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
FL F +QAA TGKGP++ AT
Sbjct: 249 GFLGFAVQAAATGKGPLNNWAT 270
>gi|20260162|gb|AAM12979.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 152/202 (75%), Positives = 175/202 (86%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ+D DSLDQNLAKN G+++G T++ + + TP QPY+EVF
Sbjct: 72 LVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVF 131
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
G+QRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TL
Sbjct: 132 GIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTL 191
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRNAELD KRLYPGG +FDPLGLA+DP K LQLAEIKHARLAMV
Sbjct: 192 IWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMV 251
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
AFL F +QAA TGKGP++ AT
Sbjct: 252 AFLGFAVQAAATGKGPLNNWAT 273
>gi|224090986|ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
gi|118489077|gb|ABK96345.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222855110|gb|EEE92657.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
Length = 285
Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 152/202 (75%), Positives = 173/202 (85%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ++ DSLDQNLAKN G+++G T+ +++ TP QPY+EVF
Sbjct: 68 LVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNLAGDIIGTRTEFADVKSTPFQPYSEVF 127
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELVEGSSYLGQPLPFS+T L
Sbjct: 128 GLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITAL 187
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIE ++IGYIE+QRNAELDP KRLYPGG +FDPLGLASDP K LQLAEIKHARLAMV
Sbjct: 188 IWIEAVIIGYIEFQRNAELDPEKRLYPGGQFFDPLGLASDPEKKATLQLAEIKHARLAMV 247
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
AFL F +QA TGKGP++ AT
Sbjct: 248 AFLGFAVQAWVTGKGPLNNWAT 269
>gi|15241005|ref|NP_195773.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
gi|38502901|sp|Q07473.1|CB4A_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.1,
chloroplastic; AltName: Full=LHCB4.1; AltName:
Full=LHCII protein 4.1; Flags: Precursor
gi|298036|emb|CAA50712.1| CP29 [Arabidopsis thaliana]
gi|7327812|emb|CAB82269.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|15081815|gb|AAK82562.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16323075|gb|AAL15272.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16648983|gb|AAL24343.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|20148703|gb|AAM10242.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|22137102|gb|AAM91396.1| At5g01530/F7A7_50 [Arabidopsis thaliana]
gi|110741014|dbj|BAE98601.1| Lhcb4- protein [Arabidopsis thaliana]
gi|332002974|gb|AED90357.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
Length = 290
Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 152/202 (75%), Positives = 175/202 (86%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ+D DSLDQNLAKN G+++G T++ + + TP QPY+EVF
Sbjct: 72 LVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVF 131
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
G+QRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TL
Sbjct: 132 GIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTL 191
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRNAELD KRLYPGG +FDPLGLA+DP K LQLAEIKHARLAMV
Sbjct: 192 IWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMV 251
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
AFL F +QAA TGKGP++ AT
Sbjct: 252 AFLGFAVQAAATGKGPLNNWAT 273
>gi|445116|prf||1908421A light-harvesting complex IIa protein
Length = 286
Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 154/202 (76%), Positives = 173/202 (85%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQYD DSLDQNLA+N GE++G + +++ TP QPY EVF
Sbjct: 68 LVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAGEIIGTRFEDADVKSTPFQPYAEVF 127
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA+ VE LTGV WQDAGKVELV+GSSYLGQPLPF++TTL
Sbjct: 128 GLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVDGSSYLGQPLPFTITTL 187
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRNAELDP +RLYPGG YFDPLGLA+DP K E LQLAEIKHARLAMV
Sbjct: 188 IWIEVLVIGYIEFQRNAELDPERRLYPGGSYFDPLGLAADPEKKETLQLAEIKHARLAMV 247
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
AFL F +QAA TGKG ++ AT
Sbjct: 248 AFLGFAVQAAATGKGRLNNWAT 269
>gi|110377766|gb|ABG73415.1| chloroplast pigment-binding protein CP29 [Nicotiana tabacum]
Length = 285
Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 155/203 (76%), Positives = 175/203 (86%), Gaps = 2/203 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ+D DSLDQNLAKN G+++G T+ +++ TP QPY+EVF
Sbjct: 65 LVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTELADVKSTPFQPYSEVF 124
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA+ VE LTG+ WQDAGKVELVEGSSYLGQPLPFS+TTL
Sbjct: 125 GLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTL 184
Query: 121 IWIEVIVIGYI-EYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAM 178
IWIEV+VIGYI E+QRNAELDP KRLYPGG +FDPLGLA+DP K LQLAEIKHARLAM
Sbjct: 185 IWIEVLVIGYIVEFQRNAELDPEKRLYPGGSFFDPLGLAADPEKKATLQLAEIKHARLAM 244
Query: 179 VAFLIFGIQAAFTGKGPISFVAT 201
VAFL F +QAA TGKGP++ AT
Sbjct: 245 VAFLGFAVQAAATGKGPLNNWAT 267
>gi|312281599|dbj|BAJ33665.1| unnamed protein product [Thellungiella halophila]
Length = 288
Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 153/202 (75%), Positives = 173/202 (85%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ+D DSLDQNLAKN G+++G T+ + TP QPY+EVF
Sbjct: 69 LVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEEAAPKSTPFQPYSEVF 128
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
G+QRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TL
Sbjct: 129 GIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTL 188
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRNAELD KRLYPGG +FDPLGLASDP K LQLAEIKHARLAMV
Sbjct: 189 IWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPEKTAQLQLAEIKHARLAMV 248
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
AFL F +QAA TGKGP++ AT
Sbjct: 249 AFLGFAVQAAATGKGPLNNWAT 270
>gi|297829418|ref|XP_002882591.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
gi|297328431|gb|EFH58850.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
Length = 287
Score = 312 bits (800), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 153/202 (75%), Positives = 173/202 (85%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ+D DSLDQNLAKN G+++G T++ + + TP QPY+EVF
Sbjct: 69 LVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEAVDPKSTPFQPYSEVF 128
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGAI VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TL
Sbjct: 129 GLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTL 188
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+V+GYIE+QRNAELD KRLYPGG +FDPLGLASDP K LQLAEIKHARLAMV
Sbjct: 189 IWIEVLVVGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPEKKAQLQLAEIKHARLAMV 248
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
FL F +QAA TGKGP++ AT
Sbjct: 249 GFLGFAVQAAATGKGPLNNWAT 270
>gi|13877547|gb|AAK43851.1|AF370474_1 chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|23198310|gb|AAN15682.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 312 bits (800), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 151/202 (74%), Positives = 174/202 (86%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ+D DSLDQNLAKN G+++G T++ + + TP QPY+EVF
Sbjct: 72 LVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVF 131
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
G+QRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TL
Sbjct: 132 GIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTL 191
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
IWIEV+VIGYIE+QRNAELD KRLYPGG +FDPL LA+DP K LQLAEIKHARLAMV
Sbjct: 192 IWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLSLAADPEKTAQLQLAEIKHARLAMV 251
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
AFL F +QAA TGKGP++ AT
Sbjct: 252 AFLGFAVQAAATGKGPLNNWAT 273
>gi|224140409|ref|XP_002323575.1| predicted protein [Populus trichocarpa]
gi|222868205|gb|EEF05336.1| predicted protein [Populus trichocarpa]
Length = 283
Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 152/202 (75%), Positives = 174/202 (86%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLG+P EYLQ++ DSLDQNLAKN G+++G T+ +++ TP QPY+EVF
Sbjct: 66 LVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAGDIIGTRTEVSDVKSTPFQPYSEVF 125
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELVEGSSYLGQPLPFS+TTL
Sbjct: 126 GLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTL 185
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
I IEV+VIGYIE+QRNAELDP KRLYPGG +FDPLGLA+DP K LQLAEIKHARLAMV
Sbjct: 186 ILIEVLVIGYIEFQRNAELDPEKRLYPGGNFFDPLGLAADPEKKATLQLAEIKHARLAMV 245
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
AFL F +QA TGKGP++ AT
Sbjct: 246 AFLGFAVQAWVTGKGPLNNWAT 267
>gi|118489398|gb|ABK96503.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 283
Score = 310 bits (794), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 152/202 (75%), Positives = 174/202 (86%), Gaps = 1/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLG+P EYLQ++ DSLDQNLAKN G+++G T+ +++ TP QPY+EVF
Sbjct: 66 LVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAGDIIGTRTEVSDVKSTPFQPYSEVF 125
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAML TLGA++VE LTGV WQDAGKVELVEGSSYLGQPLPFS+TTL
Sbjct: 126 GLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTL 185
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
I IEV+VIGYIE+QRNAELDP KRLYPGG +FDPLGLA+DP K LQLAEIKHARLAMV
Sbjct: 186 ILIEVLVIGYIEFQRNAELDPEKRLYPGGNFFDPLGLAADPEKKATLQLAEIKHARLAMV 245
Query: 180 AFLIFGIQAAFTGKGPISFVAT 201
AFL F +QA TGKGP++ AT
Sbjct: 246 AFLGFAVQAWVTGKGPLNNWAT 267
>gi|125600703|gb|EAZ40279.1| hypothetical protein OsJ_24721 [Oryza sativa Japonica Group]
Length = 267
Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 149/190 (78%), Positives = 168/190 (88%), Gaps = 1/190 (0%)
Query: 13 GKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIH 72
G P EYLQ++ DSLDQNLAKN+ GE++G ++GE++ TP QPYTEVFGLQRFRECELIH
Sbjct: 60 GAPAEYLQFELDSLDQNLAKNNAGEIIGTRFETGEVKSTPFQPYTEVFGLQRFRECELIH 119
Query: 73 GRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIE 132
GRWAML TLGA++VE LTGV WQDAGKVELV+GSSYLGQPLPFS++TLIWIEV+VIGYIE
Sbjct: 120 GRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIE 179
Query: 133 YQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFT 191
+QRNAELDP KRLYPGG YFDPLGLASDP K E LQLAEIKHARLAMVAFL F +QAA T
Sbjct: 180 FQRNAELDPEKRLYPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVAFLGFAVQAAAT 239
Query: 192 GKGPISFVAT 201
GKGP++ AT
Sbjct: 240 GKGPLNNWAT 249
>gi|302784975|ref|XP_002974259.1| light-harvesting complex [Selaginella moellendorffii]
gi|300157857|gb|EFJ24481.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 144/198 (72%), Positives = 163/198 (82%), Gaps = 2/198 (1%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLG-VITDSGELQPTPLQPYTEV 59
+VGD GFDPLGLGKP YLQ+D DSLD +LAKN GELLG + D ++ TPLQPYTE+
Sbjct: 81 LVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLGERVEDLSTIRATPLQPYTEI 140
Query: 60 FGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTT 119
FGLQRFRECELIHGRWAML TLGAIAVE TGV WQDAGKVEL +G SY G LPF++T
Sbjct: 141 FGLQRFRECELIHGRWAMLATLGAIAVETFTGVTWQDAGKVELDQGPSYFGFSLPFTITA 200
Query: 120 LIWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAM 178
L+WIEV+VIG+IE+QRN ELDP KRLYPGG YFDPLGLA+DP + E L+LAEIKHARLAM
Sbjct: 201 LVWIEVLVIGFIEFQRNTELDPEKRLYPGGSYFDPLGLAADPERKEVLKLAEIKHARLAM 260
Query: 179 VAFLIFGIQAAFTGKGPI 196
VA F +QAA TGKGP+
Sbjct: 261 VAAFGFAVQAAATGKGPL 278
>gi|302807871|ref|XP_002985629.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146538|gb|EFJ13207.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 144/198 (72%), Positives = 163/198 (82%), Gaps = 2/198 (1%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLG-VITDSGELQPTPLQPYTEV 59
+VGD GFDPLGLGKP YLQ+D DSLD +LAKN GELLG + D ++ TPLQPYTE+
Sbjct: 81 LVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLGERVEDLSTIRATPLQPYTEI 140
Query: 60 FGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTT 119
FGLQRFRECELIHGRWAML TLGAIAVE TGV WQDAGKVEL +G SY G LPF++T
Sbjct: 141 FGLQRFRECELIHGRWAMLATLGAIAVETFTGVTWQDAGKVELDQGPSYFGFSLPFTITA 200
Query: 120 LIWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAM 178
L+WIEV+VIG+IE+QRN ELDP KRLYPGG YFDPLGLA+DP + E L+LAEIKHARLAM
Sbjct: 201 LVWIEVLVIGFIEFQRNTELDPEKRLYPGGSYFDPLGLAADPERKEVLKLAEIKHARLAM 260
Query: 179 VAFLIFGIQAAFTGKGPI 196
VA F +QAA TGKGP+
Sbjct: 261 VAAFGFAVQAAATGKGPL 278
>gi|116779436|gb|ABK21281.1| unknown [Picea sitchensis]
gi|116780920|gb|ABK21880.1| unknown [Picea sitchensis]
gi|116785937|gb|ABK23915.1| unknown [Picea sitchensis]
gi|116792210|gb|ABK26276.1| unknown [Picea sitchensis]
gi|224284045|gb|ACN39760.1| unknown [Picea sitchensis]
gi|224285097|gb|ACN40276.1| unknown [Picea sitchensis]
Length = 288
Score = 285 bits (730), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 143/203 (70%), Positives = 166/203 (81%), Gaps = 2/203 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDPLGLGKP+EYLQYD DSLDQNL N G+LLG +++P+ +QPY+EVF
Sbjct: 83 LVGDYGFDPLGLGKPSEYLQYDVDSLDQNLDLNLPGDLLGDFVGDPDIKPS-IQPYSEVF 141
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAMLG LGA+AVE TG+ WQDAGKVELVEGSSY G LPF+++TL
Sbjct: 142 GLQRFRECELIHGRWAMLGVLGALAVEGFTGIYWQDAGKVELVEGSSYFGFSLPFNMSTL 201
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
I IEV+++GYIE+QRNAE+DP RLYPGG YFDP GLA D K + L+LAEIKHARLAMV
Sbjct: 202 ILIEVLLLGYIEFQRNAEVDPETRLYPGGKYFDPFGLAVDEIKKDRLKLAEIKHARLAMV 261
Query: 180 AFLIFGIQAAFTGKGPISFVATF 202
AFLIF IQAA T KGP++ F
Sbjct: 262 AFLIFAIQAAVTSKGPLTLFVEF 284
>gi|116790890|gb|ABK25779.1| unknown [Picea sitchensis]
Length = 288
Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 143/203 (70%), Positives = 165/203 (81%), Gaps = 2/203 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDPLGLGKP+EYLQYD DSLDQNL N G+LLG +++P+ +QPY+EVF
Sbjct: 83 LVGDYGFDPLGLGKPSEYLQYDVDSLDQNLDLNLPGDLLGDFVGDPDIKPS-IQPYSEVF 141
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAMLG LGA+AVE TG+ WQDAGKVELVEGSSY G LPF+++TL
Sbjct: 142 GLQRFRECELIHGRWAMLGVLGALAVEGFTGIYWQDAGKVELVEGSSYFGFSLPFNMSTL 201
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
I IEV+++GYIE+QRNAE+DP RLYPGG YFDP GLA D K + L LAEIKHARLAMV
Sbjct: 202 ILIEVLLLGYIEFQRNAEVDPETRLYPGGKYFDPFGLAVDEIKKDRLNLAEIKHARLAMV 261
Query: 180 AFLIFGIQAAFTGKGPISFVATF 202
AFLIF IQAA T KGP++ F
Sbjct: 262 AFLIFAIQAAVTSKGPLTLFVEF 284
>gi|116792229|gb|ABK26282.1| unknown [Picea sitchensis]
Length = 288
Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 142/203 (69%), Positives = 166/203 (81%), Gaps = 2/203 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDPLGLGKP+EYLQYD DSLDQNL N G+LLG +++P+ +QPY+EVF
Sbjct: 83 LVGDYGFDPLGLGKPSEYLQYDVDSLDQNLDLNLPGDLLGDFVGDPDIKPS-IQPYSEVF 141
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRECELIHGRWAMLG LGA+AVE TG+ WQDAGKVELVEGSSY G LPF+++TL
Sbjct: 142 GLQRFRECELIHGRWAMLGVLGALAVEGFTGIYWQDAGKVELVEGSSYFGFSLPFNMSTL 201
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMV 179
I IEV+++GYIE+QRNAE+DP RLYPGG YFDP GLA + K + L+LAEIKHARLAMV
Sbjct: 202 ILIEVLLLGYIEFQRNAEVDPETRLYPGGKYFDPFGLAVEEIKKDRLKLAEIKHARLAMV 261
Query: 180 AFLIFGIQAAFTGKGPISFVATF 202
AFLIF IQAA T KGP++ F
Sbjct: 262 AFLIFAIQAAVTSKGPLTLFVEF 284
>gi|168067076|ref|XP_001785452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168067086|ref|XP_001785457.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662935|gb|EDQ49732.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662940|gb|EDQ49737.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 296
Score = 268 bits (686), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 137/201 (68%), Positives = 161/201 (80%), Gaps = 2/201 (0%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGV-ITDSGELQPTPLQPYTEVFG 61
GD GFDPL LGK EYLQ + DSL+QNLAKN+ G+++G I+ E+ PTP QPY+EVFG
Sbjct: 80 GDYGFDPLSLGKSPEYLQIELDSLNQNLAKNEAGDVIGTRISKKEEIAPTPFQPYSEVFG 139
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLI 121
LQRFRECELIHGRWAML LGA++VEA TGV WQDAGKVELV+G+SY G PLPFS+T+L+
Sbjct: 140 LQRFRECELIHGRWAMLAILGALSVEAFTGVTWQDAGKVELVDGASYFGLPLPFSITSLV 199
Query: 122 WIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVA 180
+IE ++G+IE+QRNAELDP KRLYPGG +FDPL A K E L+LAEIKHARLAMVA
Sbjct: 200 YIEAFLVGFIEFQRNAELDPEKRLYPGGKFFDPLNFADTEEKKETLKLAEIKHARLAMVA 259
Query: 181 FLIFGIQAAFTGKGPISFVAT 201
L F QAA TGKGP+ AT
Sbjct: 260 ALGFAAQAAATGKGPLDNWAT 280
>gi|168040609|ref|XP_001772786.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168040679|ref|XP_001772821.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675863|gb|EDQ62353.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675898|gb|EDQ62388.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 296
Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 137/201 (68%), Positives = 161/201 (80%), Gaps = 2/201 (0%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGV-ITDSGELQPTPLQPYTEVFG 61
GD GFDPL LGK EYLQ + DSL+QNLAKN+ G+++G I+ E+ PTP QPY+EVFG
Sbjct: 80 GDYGFDPLSLGKSPEYLQIELDSLNQNLAKNEAGDVIGTRISKKEEIAPTPFQPYSEVFG 139
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLI 121
LQRFRECELIHGRWAML LGA++VEA TGV WQDAGKVELV+G+SY G PLPFS+T+L+
Sbjct: 140 LQRFRECELIHGRWAMLAILGALSVEAFTGVTWQDAGKVELVDGASYFGLPLPFSITSLV 199
Query: 122 WIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVA 180
+IE ++G+IE+QRNAELDP KRLYPGG +FDPL A K E L+LAEIKHARLAMVA
Sbjct: 200 YIEAFLVGFIEFQRNAELDPEKRLYPGGKFFDPLNFADTEDKKETLKLAEIKHARLAMVA 259
Query: 181 FLIFGIQAAFTGKGPISFVAT 201
L F QAA TGKGP+ AT
Sbjct: 260 ALGFAAQAAATGKGPLDNWAT 280
>gi|224285629|gb|ACN40533.1| unknown [Picea sitchensis]
Length = 249
Score = 262 bits (669), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 130/188 (69%), Positives = 152/188 (80%), Gaps = 2/188 (1%)
Query: 16 TEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRW 75
+EYLQYD DSLDQNL N G+LLG +++P+ +QPY+EVFGLQRFRECELIHGRW
Sbjct: 59 SEYLQYDVDSLDQNLDLNLPGDLLGDFVGDPDIKPS-IQPYSEVFGLQRFRECELIHGRW 117
Query: 76 AMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQR 135
AMLG LGA+AVE TG+ WQDAGKVELVEGSSY G LPF+++TLI IEV+++GYIE+QR
Sbjct: 118 AMLGVLGALAVEGFTGIYWQDAGKVELVEGSSYFGFSLPFNMSTLILIEVLLLGYIEFQR 177
Query: 136 NAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKG 194
NAE+DP RLYPGG YFDP GLA D K + L+LAEIKHARLAMVAFLIF IQAA T KG
Sbjct: 178 NAEVDPETRLYPGGKYFDPFGLAVDEIKKDRLKLAEIKHARLAMVAFLIFAIQAAVTSKG 237
Query: 195 PISFVATF 202
P++ F
Sbjct: 238 PLTLFVEF 245
>gi|295798043|emb|CBL86548.1| chlorophyll a/b binding protein [Olea europaea]
Length = 179
Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 123/160 (76%), Positives = 140/160 (87%), Gaps = 1/160 (0%)
Query: 43 TDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVEL 102
T++ +++ TP QPY+EVFGLQRFRECELIHGRW ML TLGA+ VE LTGV WQDAGKVEL
Sbjct: 2 TEAADVKSTPFQPYSEVFGLQRFRECELIHGRWGMLATLGALTVEWLTGVTWQDAGKVEL 61
Query: 103 VEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPG 161
VEG+SYLGQPLPFS+TTLIWIEV+VIGYIE+QRNAE+DP KR YPGG +FDPLGLA+DP
Sbjct: 62 VEGASYLGQPLPFSITTLIWIEVLVIGYIEFQRNAEVDPEKRXYPGGSFFDPLGLAADPE 121
Query: 162 KLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
K LQLAEIKHARLAMVAFL F +QAA TGKGP++ AT
Sbjct: 122 KKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWAT 161
>gi|388508870|gb|AFK42501.1| unknown [Medicago truncatula]
Length = 224
Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 111/145 (76%), Positives = 127/145 (87%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
M+GDRGFDPLGL KP EYLQ+D DSLDQNLAKN G+++G +S ++ PTP QPYTEVF
Sbjct: 74 MIGDRGFDPLGLAKPVEYLQFDLDSLDQNLAKNLAGDIIGTRVESTDVNPTPFQPYTEVF 133
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
G+QRFRECE+IHGRWAMLG LGA+AVEA TGVAWQDAGKVELVEGSSY G LPFS++TL
Sbjct: 134 GIQRFRECEVIHGRWAMLGALGALAVEAFTGVAWQDAGKVELVEGSSYFGFSLPFSISTL 193
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRL 145
IWIEV+VIGYIE+QRNAELDP K +
Sbjct: 194 IWIEVLVIGYIEFQRNAELDPEKSI 218
>gi|384248209|gb|EIE21694.1| hypothetical protein COCSUDRAFT_67011 [Coccomyxa subellipsoidea
C-169]
Length = 316
Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/202 (58%), Positives = 144/202 (71%), Gaps = 3/202 (1%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITD-SGELQPTPLQPYTEVFG 61
GDRGFDPLGL P +YLQ D LDQN A N G ++G ++ T LQPY EVFG
Sbjct: 97 GDRGFDPLGLSSPQDYLQVGIDQLDQNKAVNKAGAIVGKFAAPKTKISDTALQPYDEVFG 156
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLI 121
LQRFRE ELIHGRWAMLG LG + EA TGV+W DAGKVEL +G+ YLG LPFS++ L+
Sbjct: 157 LQRFRETELIHGRWAMLGALGVLVAEASTGVSWVDAGKVEL-DGAQYLGFSLPFSISQLV 215
Query: 122 WIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLAS-DPGKLENLQLAEIKHARLAMVA 180
WIE I++G E RN EL+P R+YPGGYFDPLGLA+ D + L+ AE+KH RLAM+A
Sbjct: 216 WIEAILVGGAEIYRNRELEPQARIYPGGYFDPLGLATGDDARAFKLKEAELKHGRLAMIA 275
Query: 181 FLIFGIQAAFTGKGPISFVATF 202
FL FG+QA TG+G + +A F
Sbjct: 276 FLGFGVQALATGQGALGSLAKF 297
>gi|145079082|tpg|DAA05897.1| TPA_inf: chloroplast light-harvesting protein CP29 precursor Lhcb4
[Acetabularia acetabulum]
Length = 275
Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 119/205 (58%), Positives = 143/205 (69%), Gaps = 4/205 (1%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTP--LQPYTEVF 60
GDRGFDPLGL KPTEYLQ + D + N+ N G ++G +S EL + LQPY EVF
Sbjct: 69 GDRGFDPLGLAKPTEYLQVELDEQNINMGVNKAGGIIGSYQESAELVSSEKRLQPYKEVF 128
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GL+RFRECELIHGRWAML LG I E TGV+W +AGKVEL +G+ Y LPFS+T L
Sbjct: 129 GLERFRECELIHGRWAMLACLGCIVAEGATGVSWVEAGKVEL-DGAQYFNFNLPFSITQL 187
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLE-NLQLAEIKHARLAMV 179
+WIE I++G E RN ELD VKR YPGG FDPL LASD + L+ AEIKHARLAM+
Sbjct: 188 VWIEAILVGGAEIYRNTELDSVKRCYPGGIFDPLKLASDDSERSFKLKEAEIKHARLAMI 247
Query: 180 AFLIFGIQAAFTGKGPISFVATFNQ 204
AFL + IQA TG+G + +A F +
Sbjct: 248 AFLGYSIQAGVTGQGALGSLALFAK 272
>gi|302839735|ref|XP_002951424.1| chlorophyll a/b-binding protein of photosystem II [Volvox carteri
f. nagariensis]
gi|300263399|gb|EFJ47600.1| chlorophyll a/b-binding protein of photosystem II [Volvox carteri
f. nagariensis]
Length = 317
Score = 228 bits (582), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 117/203 (57%), Positives = 143/203 (70%), Gaps = 4/203 (1%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGE--LQPTPLQPYTEVF 60
GDRGFDPLGL KP+E++ D DQN AKN+ G + V+T + + L PY+EVF
Sbjct: 106 GDRGFDPLGLAKPSEFVVIGVDENDQNAAKNNKGSVEAVVTATPDEVSAENRLAPYSEVF 165
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GL RFRECELIHGRWAML LG + EA TGV+W DAGKVEL +G+SY G LPFS+T L
Sbjct: 166 GLARFRECELIHGRWAMLACLGCLVAEATTGVSWVDAGKVEL-DGASYAGLSLPFSITQL 224
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLAS-DPGKLENLQLAEIKHARLAMV 179
IWIEVI++G E RN E +P KR YPGG+FDPL LAS D + L+ AEIKHARLAMV
Sbjct: 225 IWIEVILVGGAEIYRNTETNPEKRCYPGGFFDPLKLASEDEERAFRLKTAEIKHARLAMV 284
Query: 180 AFLIFGIQAAFTGKGPISFVATF 202
+F + +QA TG+G + +A F
Sbjct: 285 SFFGYSVQAFTTGEGALGSLAKF 307
>gi|159478202|ref|XP_001697193.1| chlorophyll a-b binding protein of photosystem II [Chlamydomonas
reinhardtii]
gi|60391855|sp|Q93WD2.3|CB29_CHLRE RecName: Full=Chlorophyll a-b binding protein CP29; AltName:
Full=Lhcbm4
gi|15430560|dbj|BAB64415.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas reinhardtii]
gi|15430568|dbj|BAB64419.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas reinhardtii]
gi|27542567|gb|AAO16494.1| CP29-like protein [Chlamydomonas reinhardtii]
gi|158274667|gb|EDP00448.1| chlorophyll a-b binding protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 280
Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/209 (56%), Positives = 146/209 (69%), Gaps = 16/209 (7%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTP--------LQ 54
GDRGFDPLGL KP+E++ D DQN AKN+ G + ++ Q TP L
Sbjct: 69 GDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIV------QATPDEVSSENRLA 122
Query: 55 PYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLP 114
PY+EVFGL RFRECELIHGRWAML LGA+ EA TGV+W +AGKVEL +G+SY G LP
Sbjct: 123 PYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLP 181
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLAS-DPGKLENLQLAEIKH 173
FS+T LIWIEVI++G E+ RN+E +P KR YPGG FDPL LAS D + L+ AEIKH
Sbjct: 182 FSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKH 241
Query: 174 ARLAMVAFLIFGIQAAFTGKGPISFVATF 202
ARLAMV+F +G+QA TG+G + +A F
Sbjct: 242 ARLAMVSFFGYGVQALSTGEGALGSLAKF 270
>gi|87313187|gb|ABD37890.1| light-harvesting chlorophyll-a/b binding protein Lhcb4 [Mesostigma
viride]
gi|145079643|tpg|DAA05922.1| TPA_inf: chloroplast light-harvesting complex protein CP29
precursor Lhcb4 [Mesostigma viride]
Length = 306
Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/202 (54%), Positives = 143/202 (70%), Gaps = 2/202 (0%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSG-ELQPTPLQPYTEV 59
M+GD G+D LGL P E+LQYD D D N A + GE++G I +G E+ TP QPY EV
Sbjct: 93 MIGDYGYDILGLAAPKEFLQYDVDGNDINAAVSAPGEIIGTIKKTGPEVDATPFQPYAEV 152
Query: 60 FGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTT 119
F ++RFRE ELI+GRWAMLG GA+A E TG+ W D GKV L +GSS+ G PLP+++T
Sbjct: 153 FSIERFRETELINGRWAMLGVAGALAGEMQTGINWVDIGKVMLEQGSSFGGLPLPWTMTQ 212
Query: 120 LIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLA-SDPGKLENLQLAEIKHARLAM 178
L+ IEV+++G+ E RN ELDP KRLYPGG FDP G + ++ +L+LAEIKHARL M
Sbjct: 213 LVIIEVVLVGWAEILRNNELDPEKRLYPGGPFDPFGFTKASESRVNDLKLAEIKHARLGM 272
Query: 179 VAFLIFGIQAAFTGKGPISFVA 200
+A L F +Q A+TG GPI +A
Sbjct: 273 MASLGFAVQYAYTGAGPIKNLA 294
>gi|255646663|gb|ACU23805.1| unknown [Glycine max]
Length = 129
Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 110/129 (85%), Positives = 119/129 (92%), Gaps = 1/129 (0%)
Query: 77 MLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRN 136
MLG+LGA+AVEALTGVAWQDAGKVELVEGSSYLG PLPFSLTTLIWIEVIVIGYIE+QRN
Sbjct: 1 MLGSLGALAVEALTGVAWQDAGKVELVEGSSYLGLPLPFSLTTLIWIEVIVIGYIEFQRN 60
Query: 137 AELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGP 195
AELDP KRLYPGG +FDPLGLA+DP + LQLAEIKH+RLAMV FLIF IQAA TGKGP
Sbjct: 61 AELDPEKRLYPGGRFFDPLGLANDPEEKARLQLAEIKHSRLAMVVFLIFAIQAAVTGKGP 120
Query: 196 ISFVATFNQ 204
ISF+ATFN+
Sbjct: 121 ISFLATFNK 129
>gi|87313237|gb|ABD37915.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas incerta]
Length = 259
Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 110/186 (59%), Positives = 133/186 (71%), Gaps = 4/186 (2%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGE--LQPTPLQPYTEVF 60
GDRGFDPLGL KP+E++ D DQN+ KN+ G + ++ S + L PY+EVF
Sbjct: 75 GDRGFDPLGLSKPSEFVVIGVDENDQNVGKNNKGTVEAIVQASPDEVSSENRLAPYSEVF 134
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GL RFRECELIHGRWAML LGA+ EA TGV+W +AGKVEL +G+SY G LPFS+T L
Sbjct: 135 GLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQL 193
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLAS-DPGKLENLQLAEIKHARLAMV 179
IWIEVI++G E+ RN E DP KR YPGG FDPL LAS D + L+ AEIKHARLAMV
Sbjct: 194 IWIEVILVGGAEFYRNTETDPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMV 253
Query: 180 AFLIFG 185
+F +G
Sbjct: 254 SFFGYG 259
>gi|193875788|gb|ACF24530.1| chlorophyll a/b binding protein CP29 [Gymnochlora stellata]
Length = 290
Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 114/208 (54%), Positives = 140/208 (67%), Gaps = 12/208 (5%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVI------TDSGELQPTPLQPY 56
GDRGFDPLGL KP EYLQYD D LDQN A N G+++G D G L PY
Sbjct: 88 GDRGFDPLGLSKPAEYLQYDVDQLDQNQAVNFAGKVIGKFDGGIDEVDGGNT----LSPY 143
Query: 57 TEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFS 116
+++FGL+RFRECELIHGRWAML TLGA+ E TGV W AGKVEL +G+ YL LPF+
Sbjct: 144 SDIFGLRRFRECELIHGRWAMLATLGAVVAELSTGVPWDQAGKVEL-DGARYLNFNLPFT 202
Query: 117 LTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPG-KLENLQLAEIKHAR 175
++ L +EV+++G E RN E D KRLYPGGYFDPLGL + + +NL+ AEIKH R
Sbjct: 203 VSQLTLLEVLLVGGAEIYRNTETDLDKRLYPGGYFDPLGLTTKSAEQTQNLREAEIKHGR 262
Query: 176 LAMVAFLIFGIQAAFTGKGPISFVATFN 203
LAMVA G+QA TG+G + ++ N
Sbjct: 263 LAMVAAFGCGVQAFTTGEGLLDNLSFLN 290
>gi|384248196|gb|EIE21681.1| chlorophyll a/b-binding protein CP29 [Coccomyxa subellipsoidea
C-169]
Length = 267
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/189 (58%), Positives = 134/189 (70%), Gaps = 5/189 (2%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPT--PLQPYTEVF 60
GDRGFDPL L KP+E+LQ D D D N + N G ++G + S ++Q T L PY+EVF
Sbjct: 70 GDRGFDPLELSKPSEFLQVDLDQSDINKSVNKAGGIVGKYSSS-KVQATGAALSPYSEVF 128
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
GLQRFRE ELIHGRWAMLG LG + EA TGV+W DAGKVEL +G+ YLG LPFS++ L
Sbjct: 129 GLQRFRETELIHGRWAMLGALGVVIAEATTGVSWVDAGKVEL-DGTQYLGFSLPFSISQL 187
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLE-NLQLAEIKHARLAMV 179
IWIEV+++G E RN D +R+YPGG FDPL LASD + L+ AEIKH RLAMV
Sbjct: 188 IWIEVLLVGGAEIYRNRSTDLQERIYPGGLFDPLKLASDDSQRTFKLREAEIKHGRLAMV 247
Query: 180 AFLIFGIQA 188
AFL +Q+
Sbjct: 248 AFLGAQLQS 256
>gi|32307468|gb|AAP79139.1| chlorophyll a/b-binding protein CP29 [Bigelowiella natans]
Length = 291
Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/205 (55%), Positives = 137/205 (66%), Gaps = 6/205 (2%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSG--ELQP-TPLQPYTEV 59
GDRGFDPLGL KP EYLQ+D D LDQN A N G ++G D G E+ L PY+++
Sbjct: 89 GDRGFDPLGLSKPAEYLQFDVDQLDQNAAVNRAGRVIGQY-DGGIDEVNTENSLSPYSDI 147
Query: 60 FGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTT 119
FGL+RFRECELIHGRWAML TLGAI E TGV W AGKVEL +G+ YL LPF+++
Sbjct: 148 FGLRRFRECELIHGRWAMLATLGAIVAELSTGVPWDQAGKVEL-DGARYLNFDLPFTVSQ 206
Query: 120 LIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPG-KLENLQLAEIKHARLAM 178
L +EV+++G E RN E D KRLYPGG FDPLG + + L+ AEIKH RLAM
Sbjct: 207 LTLLEVLLVGGAEIYRNTETDLDKRLYPGGTFDPLGFTTKSDEQTMRLREAEIKHGRLAM 266
Query: 179 VAFLIFGIQAAFTGKGPISFVATFN 203
VA G+QA TG+G I ++ N
Sbjct: 267 VAAFGCGVQAFTTGEGLIENLSFLN 291
>gi|307105262|gb|EFN53512.1| hypothetical protein CHLNCDRAFT_56266 [Chlorella variabilis]
Length = 276
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/204 (52%), Positives = 134/204 (65%), Gaps = 3/204 (1%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDS-GELQPTPLQPYTEVFG 61
GDRGFDPLGL KP EYLQ D D L+QN A N G ++G T E+ PL PY+EVFG
Sbjct: 72 GDRGFDPLGLSKPVEYLQVDLDQLEQNNAVNKAGSVVGSFTPVIDEVSAVPLAPYSEVFG 131
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLI 121
LQRFRE ELIHGRWAML LGA+ E +TG +W A + + + Y G LPFS+ L
Sbjct: 132 LQRFRENELIHGRWAMLACLGALVQEGVTGDSWV-AAQTLVYDSPQYAGVELPFSIYNLA 190
Query: 122 WIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPG-KLENLQLAEIKHARLAMVA 180
+++G +E RN ELDP KR YPGG FDPL LASD + + L+ AEIKHARLAMV
Sbjct: 191 IANSVLMGGVELFRNGELDPEKRCYPGGVFDPLSLASDDSERTDKLREAEIKHARLAMVG 250
Query: 181 FLIFGIQAAFTGKGPISFVATFNQ 204
FL + +QA +TG+G + + F +
Sbjct: 251 FLGYTVQAWYTGEGALGSLRKFGE 274
>gi|145078670|tpg|DAA05880.1| TPA_inf: chloroplast light-harvesting protein CP29 precursor Lhcb4
[Euglena gracilis]
Length = 263
Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/184 (55%), Positives = 126/184 (68%), Gaps = 2/184 (1%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGE-LQPTPLQPYTEVFG 61
GDRGFDP G KP E LQY + D L+KN E +G + + + L PL P++ FG
Sbjct: 56 GDRGFDPWGFAKPEELLQYTTGTADITLSKNKDEEYVGKVKEERDVLTGEPLVPWSSAFG 115
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLI 121
L+R RECELIHGRWAML LGA+ EA+TGVAWQ+AG VE EG +Y G LPFS + +
Sbjct: 116 LKRLRECELIHGRWAMLFVLGALVGEAVTGVAWQNAGLVEAREGYTYFGFSLPFSGSQIT 175
Query: 122 WIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLAS-DPGKLENLQLAEIKHARLAMVA 180
W EV+ +G++E RN E++ KR+YPGG FDPLGLAS D L+ AEIKHARLAMVA
Sbjct: 176 WFEVLTMGFVEIFRNTEMNIEKRVYPGGAFDPLGLASKDAETTFRLKEAEIKHARLAMVA 235
Query: 181 FLIF 184
FL F
Sbjct: 236 FLGF 239
>gi|255088738|ref|XP_002506291.1| chlorophyll a/b-binding protein CP29, chloroplast precursor
[Micromonas sp. RCC299]
gi|226521563|gb|ACO67549.1| chlorophyll a/b-binding protein CP29, chloroplast precursor
[Micromonas sp. RCC299]
Length = 271
Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/201 (51%), Positives = 131/201 (65%), Gaps = 6/201 (2%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPT--PLQPYTEVF 60
GD GFDP GL PTEYLQ++ DSL+ + A N G ++G + + +PT + P+ E F
Sbjct: 68 GDAGFDPFGLSAPTEYLQFELDSLNGSAAVNKSGNVIGKLKKV-DNKPTERTIVPFNEAF 126
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
+ RFRECEL H RWAMLG LGA+ E TG++W DAGKV L E SYLG + +TTL
Sbjct: 127 DIVRFRECELQHSRWAMLGLLGAVVAEGQTGISWVDAGKV-LNEQPSYLGFDINVPVTTL 185
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLAS--DPGKLENLQLAEIKHARLAM 178
+WIEV+ +G+ E +R+AELD KR YPGGYFDPLG AS P L LQ AE+KH RLAM
Sbjct: 186 VWIEVLAMGFAEVKRSAELDSNKRCYPGGYFDPLGFASSASPEALFKLQTAELKHGRLAM 245
Query: 179 VAFLIFGIQAAFTGKGPISFV 199
+ L IQA G P+ +
Sbjct: 246 IGMLGISIQALKNGLSPLEAI 266
>gi|303288485|ref|XP_003063531.1| chlorophyll a/b-binding protein CP29, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226455363|gb|EEH52667.1| chlorophyll a/b-binding protein CP29, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 274
Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/198 (51%), Positives = 132/198 (66%), Gaps = 6/198 (3%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPT--PLQPYTEVF 60
GD GFDP GL KP EYLQ+D D+L+Q+ A N G ++G + + +PT + P+ E F
Sbjct: 72 GDAGFDPFGLSKPVEYLQFDLDALNQSAAINPSGNVIGKLKKV-DNKPTERTIVPFNEAF 130
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
+ RFRECEL H RWAMLG +GA+ E+ TG++W DAGKV L E YLG + +TTL
Sbjct: 131 DIVRFRECELQHSRWAMLGLVGAVVAESETGISWVDAGKV-LNEQPQYLGFDINVPVTTL 189
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLA--SDPGKLENLQLAEIKHARLAM 178
+WIEV+ +G+ E +R++ELD KR YPGGYFDPLGLA +D L LQ AE+KH RLAM
Sbjct: 190 VWIEVLTMGFAEVKRSSELDSNKRCYPGGYFDPLGLAASADAEALFKLQTAELKHGRLAM 249
Query: 179 VAFLIFGIQAAFTGKGPI 196
+ L QAA G P+
Sbjct: 250 IGMLGIASQAAKNGLSPL 267
>gi|118486699|gb|ABK95186.1| unknown [Populus trichocarpa]
Length = 142
Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 110/126 (87%), Gaps = 1/126 (0%)
Query: 77 MLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRN 136
ML TLGA++VE LTGV WQDAGKVELVEGSSYLGQPLPFS+TTLI IEV+VIGYIE+QRN
Sbjct: 1 MLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLILIEVLVIGYIEFQRN 60
Query: 137 AELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGP 195
AELDP KRLYPGG +FDPLGLA+DP K LQLAEIKHARLAMVAFL F +QA TGKGP
Sbjct: 61 AELDPEKRLYPGGNFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGP 120
Query: 196 ISFVAT 201
++ AT
Sbjct: 121 LNNWAT 126
>gi|412985267|emb|CCO20292.1| unknown [Bathycoccus prasinos]
Length = 277
Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 137/210 (65%), Gaps = 8/210 (3%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVI--TDSGELQPTPLQPYTE 58
M GDRGFDP GL KPTEYLQ+D D LD + AKN G ++G + TD+ + T + P+ E
Sbjct: 70 MPGDRGFDPFGLSKPTEYLQFDLDRLDGSAAKNPSGNVIGKLKKTDNKPTERT-IVPFNE 128
Query: 59 VFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPL---PF 115
F + RFRECEL+H RWAMLG +G I EA TGVAWQDAGKVEL E + YLG L
Sbjct: 129 AFDINRFRECELLHSRWAMLGLVGVIFGEAGTGVAWQDAGKVEL-EQTQYLGFNLWGEGS 187
Query: 116 SLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLAS-DPGKLENLQLAEIKHA 174
+L L IEV+++G +E+ R+AELD KR YPGG FDPLG AS P + L+ AE+KH
Sbjct: 188 NLAALTAIEVLLVGTLEFYRSAELDQEKRCYPGGAFDPLGFASKSPEETFRLKTAELKHG 247
Query: 175 RLAMVAFLIFGIQAAFTGKGPISFVATFNQ 204
RLAMVA QA G+G + + + +
Sbjct: 248 RLAMVAMFGVAQQALNNGEGALEALTSIGK 277
>gi|308812794|ref|XP_003083704.1| CP29-like light-harvesting chlorophyll a/b binding protein chlor
(IC) [Ostreococcus tauri]
gi|63029289|gb|AAY27543.1| chloroplast chlorophyll a/b-binding protein CP29 precursor Lhcb4
[Ostreococcus tauri]
gi|116055585|emb|CAL58253.1| CP29-like light-harvesting chlorophyll a/b binding protein chlor
(IC) [Ostreococcus tauri]
Length = 257
Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 103/195 (52%), Positives = 132/195 (67%), Gaps = 5/195 (2%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDS-GELQPTPLQPYTEVFG 61
GDRGFDP GLGKP EYLQ+D D+LD + A+N G ++G + + + + + PY E F
Sbjct: 59 GDRGFDPFGLGKPAEYLQFDLDALDGSAARNPSGNVIGKLKKADSKPKARTIVPYDEAFD 118
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLI 121
+ RFRECEL+H RWAMLG +GA A EA TG+ W DAGK+EL E YLG P+ ++T L
Sbjct: 119 IMRFRECELLHSRWAMLGLVGAAAAEAATGITWADAGKIEL-EQPQYLGFPIQLTVTQLT 177
Query: 122 WIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQL--AEIKHARLAMV 179
IEV+ +GY+E R+AELD KR+YPGG FDPLG + E +L AE+KH RLAM
Sbjct: 178 IIEVLAMGYLEIARSAELDQNKRMYPGGAFDPLGYVAKADAQEEFRLKTAELKHGRLAMA 237
Query: 180 AFLIFGIQAAFTGKG 194
LI I+AA TG+G
Sbjct: 238 GMLIISIEAA-TGRG 251
>gi|334184840|ref|NP_001189719.1| chlorophyll a-b binding protein CP29.3 [Arabidopsis thaliana]
gi|330254685|gb|AEC09779.1| chlorophyll a-b binding protein CP29.3 [Arabidopsis thaliana]
Length = 185
Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/101 (82%), Positives = 93/101 (92%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
M+GDRGFDP GLGKP EYLQYDFD LDQNLAKN G+++G+I +S E++PTP QPYTEVF
Sbjct: 73 MIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVF 132
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVE 101
G+QRFRECELIHGRWAMLGTLGAIAVEALTG+AWQDAGKVE
Sbjct: 133 GIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVE 173
>gi|145354756|ref|XP_001421643.1| possibly CP29, chlorophyll a/b binding [Ostreococcus lucimarinus
CCE9901]
gi|144581881|gb|ABO99936.1| possibly CP29, chlorophyll a/b binding [Ostreococcus lucimarinus
CCE9901]
Length = 260
Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 101/191 (52%), Positives = 129/191 (67%), Gaps = 5/191 (2%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDS-GELQPTPLQPYTEVFG 61
GDRGFDP L KP EY+Q+D D+LD + A N G ++G + + + + + PY E F
Sbjct: 64 GDRGFDPFNLSKPIEYVQFDLDALDGSAATNPAGRVIGKLKKTDNKPKARAIVPYDESFD 123
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLP-FSLTTL 120
+ RFRECEL+H RWAMLG +GA A EA TG++W DAGKVEL E YLG PLP S+ +L
Sbjct: 124 IMRFRECELLHSRWAMLGLVGATAAEAATGISWADAGKVEL-EQPQYLGFPLPGLSVASL 182
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQL--AEIKHARLAM 178
IEV+ +GY+E R+AELD KR+YPGG FDPLG ++ E +L AE+KH RLAM
Sbjct: 183 TAIEVLAMGYLEVARSAELDQNKRMYPGGAFDPLGYVANADAEEEFRLKTAELKHGRLAM 242
Query: 179 VAFLIFGIQAA 189
V LI I+AA
Sbjct: 243 VGMLIISIEAA 253
>gi|30680697|ref|NP_850545.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
gi|332641176|gb|AEE74697.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
Length = 227
Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/115 (69%), Positives = 90/115 (78%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ+D DSLDQNLAKN GE++G T++ + + TP QPY+EVF
Sbjct: 69 LVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVF 128
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPF 115
GLQRFRECELIHGRWAML TLGAI VE LTGV WQDAGKV + SS L L F
Sbjct: 129 GLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVSPLFFSSLLRLCLAF 183
>gi|223943043|gb|ACN25605.1| unknown [Zea mays]
gi|414887093|tpg|DAA63107.1| TPA: hypothetical protein ZEAMMB73_194761 [Zea mays]
Length = 173
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/101 (73%), Positives = 86/101 (85%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ++ DSLDQNLAKN+ G ++G +S E++ TPLQPY+EVF
Sbjct: 72 LVGDYGFDPFGLGKPVEYLQFELDSLDQNLAKNEAGGIIGTRFESSEVKSTPLQPYSEVF 131
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVE 101
GLQRFRECELIHGRWAML TLGA++VE LTGV WQDAGKV
Sbjct: 132 GLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVR 172
>gi|151381077|gb|ABS11036.1| chloroplast chlorophyll a/b-binding protein [Brassica oleracea var.
gemmifera]
Length = 157
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/102 (71%), Positives = 84/102 (82%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGD GFDP GLGKP EYLQ+D DSLDQNLAKN G+++G T+ + TP QPY+EVF
Sbjct: 41 LVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEEAAPKSTPFQPYSEVF 100
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVEL 102
G+QRFRECELIHGRWAML TLGA++VE LTGV WQDAGKV L
Sbjct: 101 GIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVML 142
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 88/136 (64%), Gaps = 1/136 (0%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGS-SYLGQPLPFSLTTL 120
LQRF+E EL+H RWAM G GA+ E L W A + G+ +YLG P+PF+L+TL
Sbjct: 68 LQRFQEAELVHSRWAMAGVAGALGAELLGQGDWYQAPLWAVNGGAPTYLGIPVPFNLSTL 127
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVA 180
+ IE + I E QRNAE D KR YPGG FDPLG + D LE +L E+K+ RLAM+A
Sbjct: 128 LAIEFVAIAGAEAQRNAEPDAEKRKYPGGAFDPLGFSKDSKVLEENKLKELKNGRLAMLA 187
Query: 181 FLIFGIQAAFTGKGPI 196
F+ F Q A TGKGP+
Sbjct: 188 FVGFIAQHAATGKGPL 203
Score = 36.2 bits (82), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMV 179
PG + FDP GL S P L+ Q AE+ H+R AM
Sbjct: 51 PGSFGFDPFGLGSTPANLQRFQEAELVHSRWAMA 84
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 98/144 (68%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+R++E ELIH RWAML G + EAL W A + V G ++YLG P+P+ +L
Sbjct: 80 LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAAVPGGQATYLGNPVPWGTLP 139
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I ++E+QR+ E DP K+ YPGG FDPLG + DP KLE L++ EIK+ RLA+
Sbjct: 140 TILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLAL 199
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +AT
Sbjct: 200 LAFVGFCVQQSAYPGTGPLENLAT 223
>gi|7271945|gb|AAF44702.1|AF241524_1 chlorophyll a/b-binding protein type I [Asarina barclaiana]
Length = 169
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 97/144 (67%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+R++E ELIH RWAML G + EAL W A + V G ++YLG P+P+ +L
Sbjct: 17 LERYKESELIHCRWAMLAVPGILVPEALGFGNWVKAQEWAAVPGGQATYLGNPVPWGTLP 76
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I ++E+QR+ E DP KR YPGG FDPLG + DP K E L++ EIK+ RLA+
Sbjct: 77 TILVIEFLAIAFVEHQRSMEKDPEKRKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLAL 136
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +AT
Sbjct: 137 LAFVGFCVQQSAYPGTGPLENLAT 160
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 98/144 (68%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+R++E ELIH RWAML G + EAL W A + + G ++YLGQP+P+ +L
Sbjct: 81 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLP 140
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I ++E+QR+ E DP K+ YPGG FDPLG + DP K E L++ EIK+ RLA+
Sbjct: 141 TILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLAL 200
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +AT
Sbjct: 201 LAFVGFCVQQSAYPGTGPLENLAT 224
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 98/144 (68%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+RF+E ELIH RWAML G + EAL W A + V G ++YLGQP+P+ +L
Sbjct: 82 LERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLP 141
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I ++E+QR+ E DP K+ YPGG FDPLG + DP KL+ ++ EIK+ RLA+
Sbjct: 142 TILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPEKLKEYKVKEIKNGRLAL 201
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +AT
Sbjct: 202 LAFVGFCVQQSAYPGTGPLENLAT 225
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 98/144 (68%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+R++E ELIH RWAML G + EAL W A + + G ++YLG P+P+ +L
Sbjct: 80 LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLP 139
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I ++E+QR+ E DP K+ YPGG FDPLG + DP KLE L++ EIK+ RLA+
Sbjct: 140 TILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLAL 199
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +AT
Sbjct: 200 LAFVGFCVQQSAYPGTGPLENLAT 223
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 97/144 (67%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+R++E ELIH RWAML G I EAL W A + + G ++YLGQP+P+ +L
Sbjct: 81 LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLP 140
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I ++E+QR+ E D K+ YPGG FDPLG + DP K E L++ EIK+ RLA+
Sbjct: 141 TILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLAL 200
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +AT
Sbjct: 201 LAFVGFCVQQSAYPGTGPLENLAT 224
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 98/144 (68%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+R++E ELIH RWAML G + EAL W A + + G ++YLG P+P+ +L
Sbjct: 32 LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLP 91
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I ++E+QR+ E DP K+ YPGG FDPLG + DP KLE L++ EIK+ RLA+
Sbjct: 92 TILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLAL 151
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +AT
Sbjct: 152 LAFVGFCVQQSAYPGTGPLENLAT 175
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 98/144 (68%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+R++E ELIH RWAML G + EAL W A + + G ++YLG P+P+ +L
Sbjct: 80 LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLP 139
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I ++E+QR+ E DP K+ YPGG FDPLG + DP KLE L++ EIK+ RLA+
Sbjct: 140 TILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLAL 199
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +AT
Sbjct: 200 LAFVGFCVQQSAYPGTGPLENLAT 223
>gi|303324978|pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 98/144 (68%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+R++E ELIH RWAML G + EAL W A + + G ++YLG P+P+ +L
Sbjct: 20 LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLP 79
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I ++E+QR+ E DP K+ YPGG FDPLG + DP KLE L++ EIK+ RLA+
Sbjct: 80 TILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLAL 139
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +AT
Sbjct: 140 LAFVGFCVQQSAYPGTGPLENLAT 163
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 96/144 (66%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+R++E ELIH RWAML G + EAL W A + G ++YLGQP+P+ +L
Sbjct: 80 LERYKESELIHCRWAMLAVPGILIPEALGLGNWVKAQEWAAAPGGQATYLGQPVPWGTLP 139
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I ++E+QR+ E DP K+ YPGG FDPLG + DP K E ++ EIK+ RLA+
Sbjct: 140 TVLAIEFVAIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPKKFEEYKVKEIKNGRLAL 199
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +AT
Sbjct: 200 LAFVGFCVQQSAYPGTGPLENLAT 223
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 97/144 (67%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+R++E ELIH RWAML G + EAL W A + + G ++YLG P+P+ +L
Sbjct: 80 LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLP 139
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I ++E+QR+ E DP K+ YPGG FDPLG + DP K E L++ EIK+ RLA+
Sbjct: 140 TILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLAL 199
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +AT
Sbjct: 200 LAFVGFCVQQSAYPGTGPLENLAT 223
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 92/144 (63%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
+RF+E E+ H RWAML G + EAL W A + V G ++YLG P+P+ SL
Sbjct: 81 FERFKESEVYHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGNPVPWGSLP 140
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I + E+QR E DP K+ YPGG FDPLG + DP K E +L EIK+ RLAM
Sbjct: 141 TILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAM 200
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +AT
Sbjct: 201 LAFVGFCVQQSAYPGTGPLENLAT 224
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 96/144 (66%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+R++E ELIH RWAML G I EAL W A + + G ++YLGQP+P+ +L
Sbjct: 81 LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLP 140
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I ++E+QR+ E D K+ YPGG FDPLG + DP K E L++ EIK+ RLA+
Sbjct: 141 TILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLAL 200
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+A + F + Q+A+ G GP+ +AT
Sbjct: 201 LAIVGFCVQQSAYLGTGPLENLAT 224
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 95/144 (65%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+RF+E ELIH RWAML G + EAL W A + + G ++YLGQP+P+ +L
Sbjct: 80 LERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLP 139
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I ++E+QR+ E DP K+ YPGG FDPLG + DP K ++ EIK+ RLA+
Sbjct: 140 TILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPAKFHEYKVKEIKNGRLAL 199
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ + Q+A+ G GP+ +AT
Sbjct: 200 LAFVGICVQQSAYPGTGPLENLAT 223
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 95/144 (65%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+RF+E ELIH RWAML G + EAL W A + + G ++YLG P+P+ +L
Sbjct: 80 LERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGTLP 139
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I ++E+QR+ E DP K+ YPGG FDPLG + DP K ++ EIK+ RLA+
Sbjct: 140 TVLAIEFLAISFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKVKEIKNGRLAL 199
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +AT
Sbjct: 200 LAFVGFCVQQSAYPGTGPLENLAT 223
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 93/144 (64%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPFS-LT 118
L+R++E ELIH RWAML G + EAL W +A K + G ++YLG P+P+ L
Sbjct: 82 LERYKESELIHCRWAMLAVPGVLIPEALGLGNWVEAQKWAAIPGNQATYLGAPVPWGYLP 141
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
++ +E + I ++E QRN E DP KR YPGG FDPLG + DP K + ++ EIK+ RLA+
Sbjct: 142 VILAVEFLSIAFVESQRNGEPDPEKRKYPGGAFDPLGFSKDPAKFKEYKVKEIKNGRLAL 201
Query: 179 VAFLIFGIQA-AFTGKGPISFVAT 201
+AF+ F +QA A G GP+ +AT
Sbjct: 202 LAFVGFCVQASANPGTGPLENLAT 225
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 93/144 (64%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPFS-LT 118
L+R++E ELIH RWAML G + EAL W +A K + G ++YLG P+P+ L
Sbjct: 82 LERYKESELIHCRWAMLAVPGVLIPEALGLGNWVEAQKWAAIPGNQATYLGAPVPWGYLP 141
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
++ +E + I ++E QRN E DP KR YPGG FDPLG + DP K + ++ EIK+ RLA+
Sbjct: 142 VILAVEFLSIAFVESQRNGEPDPEKRKYPGGAFDPLGFSKDPAKFKEYKVKEIKNGRLAL 201
Query: 179 VAFLIFGIQA-AFTGKGPISFVAT 201
+AF+ F +QA A G GP+ +AT
Sbjct: 202 LAFVGFCVQASANPGTGPLENLAT 225
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 92/144 (63%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
+RF+E E+ H RWAML G + EAL W A + V G ++YLG P+P+ +L
Sbjct: 81 FERFKESEVYHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGAPVPWGTLP 140
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I + E+QR E DP K+ YPGG FDPLG + DP K E +L EIK+ RLAM
Sbjct: 141 TILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAM 200
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +A+
Sbjct: 201 LAFVGFCVQQSAYPGTGPLENLAS 224
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 92/144 (63%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
+RF+E E+ H RWAML G + EAL W A + V G ++YLG P+P+ +L
Sbjct: 85 FERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVKAQEWAAVPGGQATYLGAPVPWGTLP 144
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ +E + I + E+QR E DP K+ YPGG FDPLG + DP KLE +L EIK+ RLAM
Sbjct: 145 TILAVEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSRDPAKLEEYKLKEIKNGRLAM 204
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +A
Sbjct: 205 LAFVGFCVQQSAYPGTGPLENLAA 228
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/144 (49%), Positives = 90/144 (62%), Gaps = 5/144 (3%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+RF+E ELIH RWAML G + EAL W A K G ++YLG P+P+ +L
Sbjct: 36 LERFKESELIHARWAMLAVPGVLIPEALGYGNWVSAQKWAATPGGQATYLGNPVPWGTLP 95
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
++ +E I I + E QRN E DP KR YPGG FDP+G S LE L+L EIK+ RLA+
Sbjct: 96 VILAVEFIAIAFAESQRNGESDPEKRKYPGGAFDPMGF-SKGANLEELKLKEIKNGRLAL 154
Query: 179 VAFLIFGIQA-AFTGKGPISFVAT 201
VAFL F IQA A+ G GP+ + T
Sbjct: 155 VAFLGFAIQAIAYPGTGPLENLKT 178
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 94/144 (65%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+RF+E ELIH RWAML G + EAL W A + + G ++YLG P+P +L
Sbjct: 80 LERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPRGTLP 139
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I ++E+QR+ E DP K+ YPGG FDPLG + DP K ++ EIK+ RLA+
Sbjct: 140 TVLAIEFLAISFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKVKEIKNGRLAL 199
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +AT
Sbjct: 200 LAFVGFCVQQSAYPGTGPLENLAT 223
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 92/144 (63%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
+RF+E E+ H RWAML G + EAL W A + V G ++YLG P+P+ +L
Sbjct: 32 FERFKESEVYHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGAPVPWGTLP 91
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I + E+QR E DP K+ YPGG FDPLG + DP K E +L EIK+ RLAM
Sbjct: 92 TILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAM 151
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +A+
Sbjct: 152 LAFVGFCVQQSAYPGTGPLENLAS 175
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 92/144 (63%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
+RF+E E+ H RWAML G + EAL W A + V G ++YLG P+P+ +L
Sbjct: 81 FERFKESEVYHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGAPVPWGTLP 140
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I + E+QR E DP K+ YPGG FDPLG + DP K E +L EIK+ RLAM
Sbjct: 141 TILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAM 200
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +A+
Sbjct: 201 LAFVGFCVQQSAYPGTGPLENLAS 224
>gi|222424528|dbj|BAH20219.1| AT3G54890 [Arabidopsis thaliana]
Length = 159
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 95/141 (67%), Gaps = 4/141 (2%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLTTLI 121
++E ELIH RWAML G + EAL W A + + G ++YLG P+P+ +L T++
Sbjct: 1 YKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTIL 60
Query: 122 WIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAF 181
IE + I ++E+QR+ E DP K+ YPGG FDPLG + DP KLE L++ EIK+ RLA++AF
Sbjct: 61 AIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAF 120
Query: 182 LIFGI-QAAFTGKGPISFVAT 201
+ F + Q+A+ G GP+ +AT
Sbjct: 121 VGFCVQQSAYPGTGPLENLAT 141
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/144 (49%), Positives = 90/144 (62%), Gaps = 5/144 (3%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+RF+E ELIH RWAML G + EAL W A K G ++YLG P+P+ +L
Sbjct: 79 LERFKESELIHARWAMLAVPGVLIPEALGYGNWVSAQKWAATPGGQATYLGNPVPWGNLP 138
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
++ IE + I + E QRN E DP KR YPGG FDPLG S LE L+L EIK+ RLA+
Sbjct: 139 VILAIEFLAIAFAESQRNGEPDPEKRKYPGGAFDPLGF-SKGANLEELKLKEIKNGRLAL 197
Query: 179 VAFLIFGIQA-AFTGKGPISFVAT 201
VAFL F +QA A+ G GP+ + T
Sbjct: 198 VAFLGFAVQAIAYPGTGPLENLKT 221
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 93/144 (64%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGK-VELVEG-SSYLGQPLPF-SLT 118
+RF+E E+ H RWAML G + EAL W A + L +G ++YLG P+P+ +L
Sbjct: 105 FERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLP 164
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I + E QR E DP K+ YPGG FDPLG + DP K E L+L EIK+ RLAM
Sbjct: 165 TILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAM 224
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +AT
Sbjct: 225 LAFVGFCVQQSAYPGTGPLENLAT 248
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/144 (49%), Positives = 91/144 (63%), Gaps = 5/144 (3%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+RF+E ELIH RWAML G + EAL W A K G ++YLG P+P+ +L
Sbjct: 36 LERFKESELIHARWAMLAIPGVLIPEALGYGNWVSAQKWAATPGGQATYLGNPVPWGNLP 95
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
++ +E I I ++E QRN E DP KR YPGG FDPLG S LE L+L EIK+ RLA+
Sbjct: 96 IILAVEFIAIAFVESQRNGESDPEKRKYPGGPFDPLGF-SKGANLEELKLKEIKNGRLAL 154
Query: 179 VAFLIFGIQA-AFTGKGPISFVAT 201
VAFL F +QA A+ G GP+ + T
Sbjct: 155 VAFLGFVVQAVAYPGTGPLENLKT 178
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 93/144 (64%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGK-VELVEG-SSYLGQPLPF-SLT 118
+RF+E E+ H RWAML G + EAL W A + L +G ++YLG P+P+ +L
Sbjct: 80 FERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLP 139
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I + E QR E DP K+ YPGG FDPLG + DP K E L+L EIK+ RLAM
Sbjct: 140 TILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAM 199
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +AT
Sbjct: 200 LAFVGFCVQQSAYPGTGPLENLAT 223
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 93/145 (64%), Gaps = 4/145 (2%)
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SL 117
L+RF+E ELIH RWAML G + EAL W A + V G ++YLG P+P+ +L
Sbjct: 81 NLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGNPVPWGTL 140
Query: 118 TTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLA 177
T++ IE + I ++E+QR+ E DP K+ YPGG FDPLG + DP ++ EIK+ RLA
Sbjct: 141 PTILAIEFLAISFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKTFHEYKVKEIKNGRLA 200
Query: 178 MVAFLIFGI-QAAFTGKGPISFVAT 201
++AF+ F + Q+A+ G GP+ +A
Sbjct: 201 LLAFVGFCVQQSAYPGTGPLENLAA 225
>gi|544700|gb|AAB29485.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 221
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 93/144 (64%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGK-VELVEG-SSYLGQPLPF-SLT 118
+RF+E E+ H RWAML G + EAL W A + L +G ++YLG P+P+ +L
Sbjct: 56 FERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLP 115
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I + E QR E DP K+ YPGG FDPLG + DP K E L+L EIK+ RLAM
Sbjct: 116 TILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAM 175
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +AT
Sbjct: 176 LAFVGFCVQQSAYPGTGPLENLAT 199
>gi|225580691|gb|ACN94453.1| photosystem I light-harvesting cholrophyll-a/b protein 2
[Dunaliella salina]
Length = 228
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 87/149 (58%), Gaps = 1/149 (0%)
Query: 46 GELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELV-E 104
G PL+ E LQR+RE ELIH RWAMLG G +AVE L W DA + +
Sbjct: 52 GNFNFDPLELGKEKGTLQRYREAELIHCRWAMLGAAGCLAVEVLGLGNWYDAPLWAVTGD 111
Query: 105 GSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ G +PF + T++ +EV+ + E RN D KRLYPGG FDPLG + DP E
Sbjct: 112 KPTWFGIEVPFDIATILGVEVVAMAVAEGLRNDNQDMEKRLYPGGAFDPLGFSKDPKSFE 171
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGK 193
+ +L E+K+ RLAMVA L F Q A TGK
Sbjct: 172 DKKLKELKNGRLAMVACLGFAGQHAATGK 200
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 91/144 (63%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
+RF+E E+ H RWAML G + EAL W A + G ++YLG P+P+ +L
Sbjct: 77 FERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPGGQATYLGNPVPWGTLP 136
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I + E+QR E DP K+ YPGG FDPLG + DP K E +L EIK+ RLAM
Sbjct: 137 TILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAM 196
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +A+
Sbjct: 197 LAFVAFCVQQSAYPGTGPLENLAS 220
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 92/144 (63%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGS--SYLGQPLPFS-LT 118
L+R++E ELIH RWAML G + EAL W +A K + GS +Y G P+P+ L
Sbjct: 81 LERYKESELIHCRWAMLAVPGMLIPEALGLGNWVEAQKWAAIPGSQATYFGVPVPWGYLP 140
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
++ +E + I ++E QRN E DP KR YPGG FDPLG + DP K + ++ EIK+ RLA+
Sbjct: 141 IVLAVEFLAIAFVESQRNGEPDPEKRKYPGGAFDPLGFSKDPVKFKEYKVKEIKNGRLAL 200
Query: 179 VAFLIFGIQA-AFTGKGPISFVAT 201
+AF+ F +QA A G GP+ +AT
Sbjct: 201 LAFVGFCVQASANPGTGPLENLAT 224
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 92/144 (63%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGS--SYLGQPLPFS-LT 118
L+R++E ELIH RWAML G + EAL W +A K + GS +Y G P+P+ L
Sbjct: 42 LERYKESELIHCRWAMLAVPGMLIPEALGLGNWVEAQKWAAIPGSQATYFGVPVPWGYLP 101
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
++ +E + I ++E QRN E DP KR YPGG FDPLG + DP K + ++ EIK+ RLA+
Sbjct: 102 IVLAVEFLAIAFVESQRNGEPDPEKRKYPGGAFDPLGFSKDPVKFKEYKVKEIKNGRLAL 161
Query: 179 VAFLIFGIQA-AFTGKGPISFVAT 201
+AF+ F +QA A G GP+ +AT
Sbjct: 162 LAFVGFCVQASANPGTGPLENLAT 185
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 93/145 (64%), Gaps = 4/145 (2%)
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SL 117
L+RF+E ELIH RWAML G + EAL W A + + G ++YLG P+P+ +L
Sbjct: 80 NLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGTL 139
Query: 118 TTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLA 177
T++ IE + I ++E+QR+ E DP K+ YPGG FDPLG + DP K ++ E+K+ RLA
Sbjct: 140 PTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKIKEVKNGRLA 199
Query: 178 MVAFL-IFGIQAAFTGKGPISFVAT 201
++AF+ I Q A+ G GP+ +AT
Sbjct: 200 LLAFVGIVVQQTAYPGTGPLENLAT 224
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/147 (48%), Positives = 88/147 (59%), Gaps = 4/147 (2%)
Query: 52 PLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG-SSYLG 110
PL + L+RF E E+IHGRWAMLG GA+AVE L W DA + G +++ G
Sbjct: 61 PLSLGKDPASLKRFTESEVIHGRWAMLGVAGALAVELLGYGNWYDAPLWAVTGGKATWFG 120
Query: 111 QPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAE 170
+PF L TL+ E + + E QRN D +YPGG FDPLG A D K L+L E
Sbjct: 121 IEVPFDLNTLLAFEFVAMAAAEGQRN---DAGGVIYPGGAFDPLGFAKDSSKAGELKLKE 177
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPIS 197
IK+ RLAMVAFL F Q A TGKGP++
Sbjct: 178 IKNGRLAMVAFLGFIAQHAATGKGPLA 204
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 92/144 (63%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
+RF+E E+ H RWAML G + EAL W A + V G ++Y G P+P+ +L
Sbjct: 82 FERFKESEVYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAAVPGGQATYFGVPVPWGNLP 141
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I + E+QR E DP K+ YPGG FDPLG + DP KLE +L EIK+ RLAM
Sbjct: 142 TILAIEFLAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKDPVKLEEYKLKEIKNGRLAM 201
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +A+
Sbjct: 202 LAFVGFCVQQSAYPGTGPLENLAS 225
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 91/144 (63%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
+RF+E E+ H RWAML G + EAL W A + G ++YLG P+P+ +L
Sbjct: 77 FERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPGGQATYLGNPVPWGTLP 136
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I + E+QR E DP K+ YPGG FDPLG + DP K E +L EIK+ RLAM
Sbjct: 137 TILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAM 196
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +A+
Sbjct: 197 LAFVGFCVQQSAYPGTGPLENLAS 220
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 90/139 (64%), Gaps = 4/139 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGK-VELVEG-SSYLGQPLPF-SLT 118
+RF+E E+ H RWAML G + EAL W A + L +G ++YLG P+P+ +L
Sbjct: 82 FERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLP 141
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I + E QR E DP K+ YPGG FDPLG + DP K E L+L EIK+ RLAM
Sbjct: 142 TILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAM 201
Query: 179 VAFLIFGI-QAAFTGKGPI 196
+AF+ F + Q+A+ G GP+
Sbjct: 202 LAFVGFCVQQSAYPGTGPL 220
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 95/144 (65%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+R++E ELIH RWAML G + EAL W A + + G ++YLG P+P+ +L
Sbjct: 80 LERYKESELIHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAIPGGQATYLGNPVPWGNLP 139
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I ++E+QR+ E D K+ YPGG FDPLG + DP K E ++ EIK+ RLA+
Sbjct: 140 TILAIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKFEEYKVKEIKNGRLAI 199
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +A+
Sbjct: 200 LAFVGFCVQQSAYPGTGPLENLAS 223
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 95/144 (65%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+R++E ELIH RWAML G + EAL W A + + G ++YLG P+P+ +L
Sbjct: 37 LERYKESELIHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAIPGGQATYLGNPVPWGNLP 96
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I ++E+QR+ E D K+ YPGG FDPLG + DP K E ++ EIK+ RLA+
Sbjct: 97 TILAIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPVKFEEYKVKEIKNGRLAI 156
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +A+
Sbjct: 157 LAFVGFCVQQSAYPGTGPLENLAS 180
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 91/144 (63%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
+RF+E E+ H RWAML G + EAL W A + V G ++Y G P+P+ +L
Sbjct: 50 FERFKESEVYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAAVPGGQATYFGVPVPWGNLP 109
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I + E+QR E DP K+ YPGG FDPLG + DP K E +L EIK+ RLAM
Sbjct: 110 TILAIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAM 169
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +A+
Sbjct: 170 LAFVGFCVQQSAYPGTGPLENLAS 193
>gi|145079882|tpg|DAA05946.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Micromonas sp. CCMP490]
Length = 223
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 87/147 (59%), Gaps = 5/147 (3%)
Query: 52 PLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQ 111
PL E L RF+E E+IH RWAMLG GA EA+TGV W +A + + +YLG
Sbjct: 62 PLGLGKEPANLARFQEAEIIHSRWAMLGVAGAAGQEAITGVTWIEA---PVQDSQTYLGA 118
Query: 112 PLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
PF L ++ IEV V+ ++E QR+ E DP KRLYPGG FDP G S E L+ EI
Sbjct: 119 ESPFPLPVVVAIEVFVMAFVEQQRSNEKDPAKRLYPGGAFDPAGF-SKGADFETLKKKEI 177
Query: 172 KHARLAMVAFL-IFGIQAAFTGKGPIS 197
+ R+AM+AF + G A +GP+S
Sbjct: 178 ANGRVAMLAFAGLIGQAQATNLEGPLS 204
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 23/42 (54%)
Query: 151 FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
FDPLGL +P L Q AEI H+R AM+ Q A TG
Sbjct: 60 FDPLGLGKEPANLARFQEAEIIHSRWAMLGVAGAAGQEAITG 101
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 92/144 (63%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+R++E ELIH RWAML G + EAL W A + G ++YLGQP+P+ +L
Sbjct: 79 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAATPGGQATYLGQPVPWGTLP 138
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
++ IE + I ++E+QR+ E D K+ YPGG FDPLG + DP K E ++ EIK+ RLA+
Sbjct: 139 IILAIEFVAIAFVEHQRSMEKDTEKKKYPGGAFDPLGYSKDPQKFEEYKVKEIKNGRLAL 198
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ + Q A+ G GP+ +AT
Sbjct: 199 LAFVGICVQQTAYPGTGPLENLAT 222
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 91/143 (63%), Gaps = 4/143 (2%)
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLTT 119
+RF+E E+ H RWAML G + EAL W A + V G ++Y G P+P+ +L T
Sbjct: 52 ERFKESEVYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAAVPGGQATYFGVPVPWGNLPT 111
Query: 120 LIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMV 179
++ IE + I + E+QR E DP K+ YPGG FDPLG + DP KLE +L EI++ RLAM+
Sbjct: 112 ILAIEFLAIAFAEHQRTMEKDPEKKKYPGGAFDPLGFSKDPVKLEEYKLKEIRNGRLAML 171
Query: 180 AFLIFGI-QAAFTGKGPISFVAT 201
AF+ F + Q+ + G GP+ +A+
Sbjct: 172 AFVGFCVQQSPYPGTGPLENLAS 194
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 90/142 (63%), Gaps = 4/142 (2%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLTTL 120
R++E ELIH RWAML G + EAL W A + G ++YLG P+P+ +L +
Sbjct: 82 RYKESELIHCRWAMLAVPGVLIPEALGLGNWVSAQQWAATPGGQATYLGNPVPWGTLPII 141
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVA 180
+ IE + + ++E +R E D KR YPGG FDPLG A DP KLE +L E+K+ RLA++A
Sbjct: 142 LAIEFLAVAFVEAKRGEEPDHEKRKYPGGPFDPLGFAKDPKKLEEYKLKELKNGRLALLA 201
Query: 181 FLIFGIQA-AFTGKGPISFVAT 201
FL F +QA A+ G GP+ +A+
Sbjct: 202 FLGFSVQAIAYPGTGPLENLAS 223
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 89/139 (64%), Gaps = 4/139 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGK-VELVEG-SSYLGQPLPF-SLT 118
+RF+E E+ H RWAML G + EAL W A + L +G ++Y G P+P+ +L
Sbjct: 82 FERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYFGVPVPWGNLP 141
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I + E QR E DP K+ YPGG FDPLG + DP K E L+L EIK+ RLAM
Sbjct: 142 TILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAM 201
Query: 179 VAFLIFGI-QAAFTGKGPI 196
+AF+ F + Q+A+ G GP+
Sbjct: 202 LAFVGFCVQQSAYPGTGPL 220
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 89/144 (61%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+RF+E ELIH RWAML G + EAL W +A + G ++YLG P+P+ +L
Sbjct: 83 LERFKESELIHCRWAMLAVPGCLIPEALGLGNWVEAQQWAATPGGQATYLGTPVPWGTLP 142
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
+I IE + I ++E +R KR YPGG FDPLG + DP K E +L E+K+ RLA+
Sbjct: 143 VIIAIEFVAIAFVESRRIGVPSAEKRKYPGGAFDPLGFSKDPKKFEEFKLKEVKNGRLAL 202
Query: 179 VAFLIFGIQ-AAFTGKGPISFVAT 201
+AFL F Q AA+ G GP+ +AT
Sbjct: 203 LAFLGFCAQAAAYPGTGPLQNLAT 226
>gi|159474444|ref|XP_001695335.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158275818|gb|EDP01593.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 239
Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 88/151 (58%), Gaps = 4/151 (2%)
Query: 52 PLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG-SSYLG 110
PL E L+RF E E+IHGRWAMLG G++AVE L W DA + G +++ G
Sbjct: 61 PLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNWYDAPLWAVNGGKATWFG 120
Query: 111 QPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAE 170
+PF L L+ E + + E QR D +YPGG FDPLG A D K L+L E
Sbjct: 121 IEVPFDLNALLAFEFVAMAAAEGQRG---DAGGVVYPGGAFDPLGFAKDSSKSGELKLKE 177
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
IK+ RLAMVAFL F Q A TGKGPI+ A+
Sbjct: 178 IKNGRLAMVAFLGFVAQHAATGKGPIAAWAS 208
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 87/148 (58%), Gaps = 6/148 (4%)
Query: 52 PLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYL 109
PL E L+RF E E+IHGRWAMLG G++AVE L W DA + V G +++
Sbjct: 61 PLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNWYDA-PLWAVNGGKATWF 119
Query: 110 GQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
G +PF L L+ E + + E QR D +YPGG FDPLG A D K L+L
Sbjct: 120 GIEVPFDLNALLAFEFVAMAAAEGQRG---DAGGVVYPGGAFDPLGFAKDSSKSGELKLK 176
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPIS 197
EIK+ RLAMVAFL F Q A TGKGPI+
Sbjct: 177 EIKNGRLAMVAFLGFVAQHAATGKGPIA 204
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 52 PLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG-SSYLG 110
PL E L+RF E E+IHGRWAMLG G++AVE L W DA + G +++ G
Sbjct: 57 PLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNWYDAPLWAVNGGKATWFG 116
Query: 111 QPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAE 170
+PF L L+ E + + E QR D +YPGG FDPLG A D K L+L E
Sbjct: 117 IEVPFDLNALLAFEFVAMAAAEGQRG---DAGGVVYPGGAFDPLGFAKDSSKSGELKLKE 173
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPIS 197
IK+ RLAMVAFL F Q A TGKGPI+
Sbjct: 174 IKNGRLAMVAFLGFVAQHAATGKGPIA 200
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 87/147 (59%), Gaps = 4/147 (2%)
Query: 52 PLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG-SSYLG 110
PL + L+RF E E+IHGRWAMLG G++AVE L W DA + G +++ G
Sbjct: 25 PLSLGKDPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNWYDAPLWAVNGGKATWFG 84
Query: 111 QPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAE 170
+PF L TL+ E + + E QR D +YPGG FDPLG A D K L+L E
Sbjct: 85 IDVPFDLNTLLAFEFVAMAAAEGQRG---DAGGVVYPGGAFDPLGFAKDASKSGELKLKE 141
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPIS 197
+K+ RLAMVAFL F Q A TGKGPI+
Sbjct: 142 VKNGRLAMVAFLGFVAQHAATGKGPIA 168
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 91/144 (63%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+RF+E ELIH WAML G + EAL W A + V G ++YLG P+P+ +L
Sbjct: 76 LERFKESELIHCGWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGNPVPWGTLP 135
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
T++ IE + I ++E+QR+ DP K+ YPGG FDPLG + DP ++ E+K+ RLA+
Sbjct: 136 TILAIEFLAISFVEHQRSMGKDPEKKKYPGGAFDPLGYSKDPKTFHEYKVKELKNGRLAL 195
Query: 179 VAFLIFGI-QAAFTGKGPISFVAT 201
+AF+ F + Q+A+ G GP+ +A
Sbjct: 196 LAFVGFCVQQSAYPGTGPLENLAA 219
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 89/144 (61%), Gaps = 4/144 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPFSLTT 119
L+R++E ELIH RWAML G + EAL W +A K + G ++YLG P+P+
Sbjct: 82 LERYKESELIHCRWAMLAVPGVLIPEALGLGNWVEAQKWAAIPGGQATYLGVPVPWGYFP 141
Query: 120 LIW-IEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAM 178
+I I + + + E QRN E D KR YPGG FDPLG + DP K E ++ EIK+ RLA+
Sbjct: 142 IILSIFFLKMAFAESQRNGEPDLEKRKYPGGAFDPLGFSKDPAKFEEYKVKEIKNGRLAL 201
Query: 179 VAFLIFGIQA-AFTGKGPISFVAT 201
+AF+ F +QA A G GP+ +AT
Sbjct: 202 LAFVGFCVQASANPGTGPLENLAT 225
>gi|255070015|ref|XP_002507089.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226522364|gb|ACO68347.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 227
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 95/201 (47%), Gaps = 48/201 (23%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
M D GFDPLGLGK E
Sbjct: 53 MPCDYGFDPLGLGK-------------------------------------------EPD 69
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
L RF+E ELIH RWAMLG GA E +TG+ W +A + +YLG +PF L +
Sbjct: 70 NLARFQEAELIHARWAMLGVSGAAGAEIITGINWVEA---PVQSQQTYLGNTIPFPLPAI 126
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVA 180
IEV V+ Y+E +R +E D KR+YPGG FDP G S E L+ E+ + R+AM+A
Sbjct: 127 AAIEVFVMAYVESKRGSETDRSKRMYPGGAFDPAGF-SKGADFEKLKRKELANGRVAMLA 185
Query: 181 FL-IFGIQAAFTGKGPISFVA 200
F I G A +GP++ +A
Sbjct: 186 FAGIIGEAQANNLEGPVAALA 206
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 90/158 (56%), Gaps = 18/158 (11%)
Query: 57 TEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT---GVA-----WQDAG-KVELVEGSS 107
+ F LQR+RE ELIHGRWAMLG +G E L GV W AG ++ EG +
Sbjct: 279 ADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLN 338
Query: 108 YLGQPLPF---SLTTLIWIEVIVIGYIEYQRNAELDP------VKRLYPGGYFDPLGLAS 158
Y GQP SL ++ +V+++G +E R P + RLYPGG FDPLGLA
Sbjct: 339 YFGQPALIHAKSLLAILATQVLLMGAVEAYRAGNTAPGQFGEDLDRLYPGGPFDPLGLAD 398
Query: 159 DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
DP L++ EIK+ RLAMVA L F QA TG+GP+
Sbjct: 399 DPDTFAELKVKEIKNGRLAMVAMLGFYAQAIVTGEGPV 436
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 83/155 (53%), Gaps = 23/155 (14%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
LQR+RE ELIHGRWAMLG LG + E L+ W AG EG YLG
Sbjct: 41 LQRYREAELIHGRWAMLGALGVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLGDA 100
Query: 113 LPFSLTTLIWI---EVIVIGYIEYQRNA--------ELDPVKRLYPGGYFDPLGLASDPG 161
+++ I +V+++G E R +LD LYPGG FDPLGLA+DP
Sbjct: 101 RLVHAQSILLILGTQVLLMGAAEAYRTGNGLGNFGKDLD---SLYPGGPFDPLGLANDPD 157
Query: 162 KLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L L++ EIK+ RLAM A F +QA TG+ P+
Sbjct: 158 TLAELKVKEIKNGRLAMFAMFGFYVQAIVTGESPL 192
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 90/158 (56%), Gaps = 18/158 (11%)
Query: 57 TEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT---GVA-----WQDAG-KVELVEGSS 107
+ F LQR+RE ELIHGRWAMLG +G E L GV W AG ++ EG +
Sbjct: 22 ADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLN 81
Query: 108 YLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAELDP------VKRLYPGGYFDPLGLAS 158
Y GQP +L+ I +V+++G +E R P + RLYPGG FDPLGLA
Sbjct: 82 YFGQPALIHAKSLLAILATQVLLMGAVEAYRAGNTAPGQFGEDLDRLYPGGPFDPLGLAD 141
Query: 159 DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
DP L++ EIK+ RLAMVA L F QA TG+GP+
Sbjct: 142 DPDTFAELKVKEIKNGRLAMVAMLGFYAQAIVTGEGPV 179
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 90/158 (56%), Gaps = 18/158 (11%)
Query: 57 TEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT---GVA-----WQDAG-KVELVEGSS 107
+ F LQR+RE ELIHGRWAMLG +G E L GV W AG ++ EG +
Sbjct: 506 ADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLN 565
Query: 108 YLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAELDP------VKRLYPGGYFDPLGLAS 158
Y GQP +L+ I +V+++G +E R P + RLYPGG FDPLGLA
Sbjct: 566 YFGQPALIHAKSLLAILATQVLLMGAVEAYRAGNTAPGQFGEDLDRLYPGGPFDPLGLAD 625
Query: 159 DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
DP L++ EIK+ RLAM+A L F QA TG+GP+
Sbjct: 626 DPDTFAELKVKEIKNGRLAMMAMLGFYAQAIVTGEGPV 663
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 81/152 (53%), Gaps = 17/152 (11%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
LQR+RE ELIHGRWAMLG LG + E L+ W AG EG YLG
Sbjct: 268 LQRYREAELIHGRWAMLGALGVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLGDA 327
Query: 113 LPFSLTTLIWI---EVIVIGYIEYQRNAEL-----DPVKRLYPGGYFDPLGLASDPGKLE 164
+++ I +V+++G E R + LYPGG FDPLGLA+DP L
Sbjct: 328 RLVHAQSILLILGTQVLLMGAAEAYRTGNGLGNFGKDLDSLYPGGPFDPLGLANDPDTLA 387
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM A F +QA TG+ P+
Sbjct: 388 ELKVKEIKNGRLAMFAMFGFYVQAIVTGESPL 419
>gi|307106821|gb|EFN55066.1| hypothetical protein CHLNCDRAFT_35848 [Chlorella variabilis]
Length = 219
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 85/147 (57%), Gaps = 6/147 (4%)
Query: 52 PLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSS--YL 109
PL E LQRF+E E+IHGRWAMLG G + VE L W DA + LV+G S Y
Sbjct: 52 PLGLAKEAPSLQRFKESEVIHGRWAMLGAAGVLGVEVLGYGNWYDA-PLPLVQGGSATYF 110
Query: 110 GQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
G +PF L TL IE + E R A +P KR+YPGG FDP G++ G + L+
Sbjct: 111 GASIPFDLGTLAAIEFAAMAGAESFRGAA-EPEKRVYPGGPFDPAGMSK--GNQDELRTK 167
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM+A L F Q A TG P+
Sbjct: 168 EIKNGRLAMIACLGFVAQHAATGASPL 194
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 86/153 (56%), Gaps = 5/153 (3%)
Query: 46 GELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG 105
G+ PL + L R+RE E+++GRWAMLG G +A E + W A + G
Sbjct: 58 GDFGYDPLGLAKDPVSLARYREAEVMNGRWAMLGVAGMLAPELVGQGTWLSAQDWAVTGG 117
Query: 106 S-SYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLE 164
+YLG LP+ T++ +E + ++E R E DP+KR+YPGG FDPLG GK E
Sbjct: 118 KPTYLGNELPYGFGTVLAVEFFCLSWVEISRGLEKDPMKRIYPGGAFDPLGF----GKDE 173
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
++ E+++ RLAMVAF+ Q G GP+S
Sbjct: 174 VNKVKELRNGRLAMVAFVGMWCQGIHVGGGPVS 206
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
Query: 30 LAKNDVGELL-GVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEA 88
LAK+++ E L G + P L E F R++ ELIH RWAMLG G + EA
Sbjct: 20 LAKDEIPEYLTGEVPGDYGYDPFGLSKKPEDF--DRYQAYELIHARWAMLGAAGFVLPEA 77
Query: 89 LTG--------VAWQDAGKVELVEGSS--YLGQPLPFSLTTLIWIEVIVIGYIEYQRNAE 138
W G + L+EG S Y G +P +L + EVI++G EY R+
Sbjct: 78 FNKFGAVCGPEAVWWKTGAL-LLEGDSIKYFGATVPLNLAAAVIAEVILVGGAEYYRSTN 136
Query: 139 LDPV----KRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKG 194
P+ RL+PGG FDPLGLA DP + L++ EIK+ RLAM + L F +QA TG+G
Sbjct: 137 KSPLGSDLDRLHPGGAFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFVQAYVTGEG 196
Query: 195 PI 196
P+
Sbjct: 197 PV 198
>gi|145332845|ref|NP_001078288.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645787|gb|AEE79308.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 213
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 3/117 (2%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLT 118
L+R++E ELIH RWAML G + EAL W A + + G ++YLG P+P+ +L
Sbjct: 80 LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLP 139
Query: 119 TLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHAR 175
T++ IE + I ++E+QR+ E DP K+ YPGG FDPLG + DP KLE L++ EIK+ +
Sbjct: 140 TILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGK 196
>gi|303277087|ref|XP_003057837.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226460494|gb|EEH57788.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 237
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 83/157 (52%), Gaps = 18/157 (11%)
Query: 58 EVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKV----ELVEGSSYLGQPL 113
+V + + E E+IHGRWAML G +A E TGV W D G + +E S+ G P
Sbjct: 59 DVLSMNKAAEYEVIHGRWAMLAIPGIVAQEQATGVPWYDTGALCTPASCLENYSFPGAPA 118
Query: 114 PFS--------LTTLIWIEVIVIGYIEYQRNAELDPVK-----RLYPGGYFDPLGLASDP 160
P + ++ EV+ +G E R + P K LYPGG FDPLG A
Sbjct: 119 PLAPEGSGAPYFWAVLAFEVVAVGLAEAYRGGIVSPPKGFPEPSLYPGGRFDPLGFAEK- 177
Query: 161 GKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
G LE L+L E+KH RLAM AFL +Q FTG GP++
Sbjct: 178 GDLEKLKLQELKHCRLAMGAFLGCLVQKEFTGVGPVA 214
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 98/214 (45%), Gaps = 59/214 (27%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD G+DP GL K E DFD
Sbjct: 77 GDYGYDPFGLSKKPE----DFD-------------------------------------- 94
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQP 112
R++ ELIH RWAMLG G + EA W G + L+EG S Y G
Sbjct: 95 -RYQAYELIHARWAMLGAAGFVLPEAFNKFGAVCGPEAVWWKTGAL-LLEGDSIKYFGAT 152
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAELD-----PVKRLYPGGYFDPLGLASDPGKLENLQ 167
+P +L + EVI++G EY R+ D + RL+PGG FDPLGLA DP + L+
Sbjct: 153 VPINLAAAVIAEVILVGGAEYYRSTNKDVYGLQDLDRLHPGGAFDPLGLAKDPDQFALLK 212
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
+ EIK+ RLAM + L F +QA TG+GP+ +A
Sbjct: 213 VKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAA 246
>gi|11066109|gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI [Chlamydomonas reinhardtii]
Length = 239
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 84/147 (57%), Gaps = 4/147 (2%)
Query: 52 PLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEG-SSYLG 110
PL E L+RF E E+IHGRWAMLG G++AVE L W DA + G +++ G
Sbjct: 61 PLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNWYDAPLWAVNGGKATWFG 120
Query: 111 QPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAE 170
+PF L L+ E + + E QR +R PGG FDPLG A D K L+L E
Sbjct: 121 IEVPFDLNALLAFEFVAMAAAEGQRRRC---RRRRLPGGAFDPLGFAKDSSKSGELKLKE 177
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPIS 197
IK+ RLAMVAFL F Q A TGK P++
Sbjct: 178 IKNGRLAMVAFLGFVAQHAATGKAPLA 204
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 85/148 (57%), Gaps = 15/148 (10%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSSYLGQP--- 112
R+RE E+IH RWAMLG LG + E L+ V W+ ++ EG YLG+P
Sbjct: 39 RYREIEVIHARWAMLGALGCLTPELLSQNGFTFQEPVWWKAGAQILSSEGLDYLGKPNLV 98
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAE----LDPVKRLYPGGYFDPLGLASDPGKLENLQL 168
S+ + ++VI++G E R A +D + +LYPGG FDPL ASDP L L++
Sbjct: 99 HAQSIVATLAVQVILMGSAEAYRAAGSAPGVDGLDKLYPGGPFDPLEFASDPDTLAELKV 158
Query: 169 AEIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM + F +QA TGKGP+
Sbjct: 159 KEIKNGRLAMFSMFGFFVQAIVTGKGPL 186
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 100/209 (47%), Gaps = 55/209 (26%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD G+DP GLGK E DF
Sbjct: 93 GDYGYDPFGLGKKPE----DF--------------------------------------- 109
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQP 112
+++ ELIH RWAMLG GA+ EA W G + L++G++ Y G
Sbjct: 110 AKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGNS 168
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
+P +L + EV+++G EY R LD +L+PGG FDPLGLASDP + L++ EI
Sbjct: 169 IPINLVVAVIAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAAILKVKEI 228
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPISFVA 200
K+ RLAM + L F IQA TG+GP+ +A
Sbjct: 229 KNGRLAMFSMLAFFIQAYVTGEGPVENLA 257
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 86/148 (58%), Gaps = 16/148 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG---VAWQDAGKVELVE-GSSYLGQP---LP 114
R+RE E+IH RWAMLG LG + E L G +AW +AG + G YLG P
Sbjct: 81 FARYREIEVIHARWAMLGALGCVVPELLDGTNHIAWFNAGATIFSDDGLQYLGIPGLINA 140
Query: 115 FSLTTLIWIEVIVIGYIE-YQRN-----AELDPVKRLYPGGYFDPLGLASDPGKLENLQL 168
S+ + ++VI++ Y+E Y+ N LD V YPGG FDPLGLA DP L++
Sbjct: 141 KSIVATLIVQVILMSYVEGYRVNGGPAGTGLDAV---YPGGSFDPLGLADDPDTFSELKV 197
Query: 169 AEIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM++ F IQA TG+GPI
Sbjct: 198 KEIKNGRLAMLSMFGFFIQAIVTGEGPI 225
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 99/209 (47%), Gaps = 55/209 (26%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD G+DP GLGK E DF
Sbjct: 94 GDYGYDPFGLGKKPE----DF--------------------------------------- 110
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQP 112
+++ ELIH RWAMLG GA+ EA W G + L++G++ Y G
Sbjct: 111 AKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGNS 169
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
+P +L + EVI++G EY R LD +L+PGG FDPLGLASDP + L++ EI
Sbjct: 170 IPINLVVAVIAEVILVGGAEYYRITNGLDLEDKLHPGGPFDPLGLASDPDQAAILKVKEI 229
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPISFVA 200
K+ RLAM + F IQA TG+GP+ +A
Sbjct: 230 KNGRLAMFSMFAFFIQAYVTGEGPVENLA 258
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 99/209 (47%), Gaps = 55/209 (26%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD G+DP GLGK E DF
Sbjct: 94 GDYGYDPFGLGKKPE----DF--------------------------------------- 110
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS--SYLGQP 112
+++ ELIH RWAMLG GA+ EA W G + L++G+ SY G
Sbjct: 111 AKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGAL-LLDGNTLSYFGNS 169
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
+P +L + EV+++G EY R LD +L+PGG FDPLGLASDP + L++ EI
Sbjct: 170 IPINLVVAVIAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAAILKVKEI 229
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPISFVA 200
K+ RLAM + F IQA TG+GP+ +A
Sbjct: 230 KNGRLAMFSMFAFFIQAYVTGEGPVENLA 258
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 99/209 (47%), Gaps = 55/209 (26%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD G+DP GLGK E DF
Sbjct: 94 GDYGYDPFGLGKKPE----DF--------------------------------------- 110
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQP 112
+++ ELIH RWAMLG GA+ EA W G + L++G++ Y G
Sbjct: 111 AKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGNS 169
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
+P +L + EV+++G EY R LD +L+PGG FDPLGLASDP + L++ EI
Sbjct: 170 IPINLVVAVIAEVVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLASDPDQAAILKVKEI 229
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPISFVA 200
K+ RLAM + F IQA TG+GP+ +A
Sbjct: 230 KNGRLAMFSMFAFFIQAYVTGEGPVENLA 258
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 90/155 (58%), Gaps = 21/155 (13%)
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEAL--------TGVAWQDAGKVELVEGSS--YLG 110
G++++R E++HGRWAMLG +G + E L G W D+G V L ++ + G
Sbjct: 101 GVEKYRPYEVLHGRWAMLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAG 160
Query: 111 QPLPFSLTTLIWIEVIVIGYIE---YQRNAE----LDPVKRLYPGG-YFDPLGLASDPGK 162
P P L + EV V IE YQ++ LDP LYPGG YFDPLGLASDP K
Sbjct: 161 IPNPVPLALAVIFEVAVFFLIENYRYQQDGPWGTGLDP---LYPGGKYFDPLGLASDPSK 217
Query: 163 LENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
+ L++ EIK+ RLAM+AFL F +Q T +GP +
Sbjct: 218 ADELKVKEIKNGRLAMMAFLGFVVQYFVTKEGPYA 252
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 82/149 (55%), Gaps = 9/149 (6%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
+++ ELIH RWAMLG G + EA W G + L G+ +Y G
Sbjct: 103 FDKYQAYELIHARWAMLGAAGFVIPEAFNKFGAQCGPEAVWFKTGALLLDGGTLNYFGAN 162
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIK 172
+P +L + EVI++G EY R+ + RL+PGG FDPLGLA DP L++ EIK
Sbjct: 163 IPINLVLAVLAEVILVGGAEYYRSINNLGLDRLHPGGPFDPLGLAKDPDNFALLKVKEIK 222
Query: 173 HARLAMVAFLIFGIQAAFTGKGPISFVAT 201
+ RLAM A L F IQA TG+GP+ + T
Sbjct: 223 NGRLAMFAMLGFFIQAYATGEGPVENLTT 251
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 83/150 (55%), Gaps = 10/150 (6%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
+++ ELIH RWAMLG G I EA W G + L G+ SY G
Sbjct: 130 FDKYQAYELIHARWAMLGAAGFIMPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGAS 189
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
+P +L + EVI++G EY R LD +L+PGG FDPLGLA DP + L++ EI
Sbjct: 190 IPINLIAAVVAEVILVGGAEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQFALLKVKEI 249
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
K+ RLAM + L F +QA TG+GP+ +A
Sbjct: 250 KNGRLAMFSMLGFFVQAYVTGEGPVENLAA 279
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 85/164 (51%), Gaps = 18/164 (10%)
Query: 44 DSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVA-----WQDAG 98
DS L PL + +RE E+IH RWAMLG LG I E L W AG
Sbjct: 120 DSAGLSADPLT-------FKGYRETEVIHARWAMLGALGCIFPELLNSAGFNLPVWFKAG 172
Query: 99 KVELVEGSSYLGQP---LPFSLTTLIWIEVIVIGYIE-YQRNAEL--DPVKRLYPGGYFD 152
G YLG P S ++ ++V+++G E Y+ N +P LYPGG FD
Sbjct: 173 GTIFENGIDYLGNPNLVHAQSALAVLSVQVVLMGASEAYRFNGGPLGEPADVLYPGGAFD 232
Query: 153 PLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
PLG A DP K L++ EIK+ RLAM A L + +QA TGKGPI
Sbjct: 233 PLGFAKDPSKAAELKVKEIKNGRLAMTAMLGYYVQALATGKGPI 276
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 83/150 (55%), Gaps = 10/150 (6%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
+++ ELIH RWAMLG G I EA W G + L G+ SY G
Sbjct: 130 FDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGAS 189
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
+P +L + EVI++G EY R LD +L+PGG FDPLGLA DP + L++ EI
Sbjct: 190 IPINLIAAVVAEVILVGGAEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQFALLKVKEI 249
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
K+ RLAM + L F +QA TG+GP+ +A
Sbjct: 250 KNGRLAMFSMLGFFVQAYVTGEGPVENLAA 279
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 83/150 (55%), Gaps = 10/150 (6%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
+++ ELIH RWAMLG G I EA W G + L G+ SY G
Sbjct: 105 FDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGAS 164
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
+P +L + EVI++G EY R LD +L+PGG FDPLGLA DP + L++ EI
Sbjct: 165 IPINLIAAVVAEVILVGGAEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQFALLKVKEI 224
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
K+ RLAM + L F +QA TG+GP+ +A
Sbjct: 225 KNGRLAMFSMLGFFVQAYVTGEGPVENLAA 254
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 83/150 (55%), Gaps = 10/150 (6%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
+++ ELIH RWAMLG G I EA W G + L G+ SY G
Sbjct: 130 FDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGAS 189
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
+P +L + EVI++G EY R LD +L+PGG FDPLGLA DP + L++ EI
Sbjct: 190 IPINLIAAVVAEVILVGGAEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQFALLKVKEI 249
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
K+ RLAM + L F +QA TG+GP+ +A
Sbjct: 250 KNGRLAMFSMLGFFVQAYVTGEGPVENLAA 279
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 87/152 (57%), Gaps = 15/152 (9%)
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEAL--------TGVAWQDAGKVELVEGSS--YLG 110
G++++R E++HGRWAMLG +G + E L G W D+G V L ++ + G
Sbjct: 108 GVEKYRPYEVLHGRWAMLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAG 167
Query: 111 QPLPFSLTTLIWIEVIVIGYIEYQRNAELDP----VKRLYPGG-YFDPLGLASDPGKLEN 165
P P L + EV V IE R + P + LYPGG YFDPLGLASDP K +
Sbjct: 168 IPNPVPLALAVIFEVAVFFLIENYRYQQDGPWGTGLDPLYPGGKYFDPLGLASDPSKADE 227
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
L++ EIK+ RLAM+AFL F +Q T +GP +
Sbjct: 228 LKVKEIKNGRLAMMAFLGFVVQYFVTKEGPYA 259
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 84/149 (56%), Gaps = 10/149 (6%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
+++ ELIH RWAMLG G I EA W G + L G+ +Y G+P
Sbjct: 115 FAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP 174
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
+P +L + E++++G EY R LD +L+PGG FDPLGLA DP + L++ EI
Sbjct: 175 IPINLIVAVVAEIVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEI 234
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPISFVA 200
K+ RLAM A L F QA TG+GP+ +A
Sbjct: 235 KNGRLAMFAMLGFYFQAYVTGEGPVENLA 263
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 90/162 (55%), Gaps = 12/162 (7%)
Query: 49 QPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKV 100
P+ L E F +++ ELIH RWAMLG G I EA W G +
Sbjct: 105 DPSGLSKKPEDF--SKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGAL 162
Query: 101 ELVEGS-SYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLAS 158
L G+ +Y G+P+P +L + E++++G EY R L+ +L+PGG FDPLGLA+
Sbjct: 163 LLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLAN 222
Query: 159 DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
DP + L++ EIK+ RLAM A L F QA TG+GP+ +A
Sbjct: 223 DPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLA 264
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 85/149 (57%), Gaps = 10/149 (6%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
+++ ELIH RWAMLG G I EA W G + L G+ +Y G+P
Sbjct: 116 FSKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP 175
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
+P +L + E++++G EY R L+ +L+PGG FDPLGLA+DP + L++ EI
Sbjct: 176 IPINLIVAVIAEIVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEI 235
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPISFVA 200
K+ RLAM A L F QA TG+GP+ +A
Sbjct: 236 KNGRLAMFAMLGFYFQAYVTGEGPVENLA 264
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 84/149 (56%), Gaps = 10/149 (6%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
+++ ELIH RWAMLG G I EA W G + L G+ +Y G+P
Sbjct: 114 FAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP 173
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
+P +L + E++++G EY R LD +L+PGG FDPLGLA DP + L++ EI
Sbjct: 174 IPINLILAVVAEIVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEI 233
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPISFVA 200
K+ RLAM A L F QA TG+GP+ +A
Sbjct: 234 KNGRLAMFAMLGFYFQAYVTGEGPVENLA 262
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 90/158 (56%), Gaps = 18/158 (11%)
Query: 62 LQRFRECELIHGRWAMLGTLGAI---AVEALTGV-----AWQDAGKVELVEGS-SYLGQP 112
+RFR E+IH RWAMLG LG I +E +GV W AG +G +YLG P
Sbjct: 79 FKRFRTVEVIHARWAMLGALGCIFPEVLEKYSGVEFGEAVWFKAGAQIFADGGLNYLGNP 138
Query: 113 ---LPFSLTTLIWIEVIVIGYIE-YQRNAEL-----DPVKRLYPGGYFDPLGLASDPGKL 163
S+ + ++V+++G +E Y+ N E + LYPGG FDPLGLA DP L
Sbjct: 139 GLVHAQSIVATLVVQVLLMGAVEIYRANGEGPSGFGEGQDNLYPGGAFDPLGLADDPDTL 198
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
L++ E+K+ RLAM++ L F +QA TGKGP+ + T
Sbjct: 199 AELKVKELKNGRLAMMSMLGFFVQAIVTGKGPLDNLLT 236
>gi|413935744|gb|AFW70295.1| hypothetical protein ZEAMMB73_802965 [Zea mays]
Length = 150
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 81/129 (62%), Gaps = 4/129 (3%)
Query: 77 MLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLTTLIWIEVIVIGYIEY 133
ML G + EAL W A + V G ++YLG P+P+ +L T++ IE + I + E+
Sbjct: 1 MLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEH 60
Query: 134 QRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGI-QAAFTG 192
QR E DP K+ YPGG FDPLG + DP K E +L EIK+ RLAM+AF+ F + Q+A+ G
Sbjct: 61 QRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPG 120
Query: 193 KGPISFVAT 201
GP+ +A+
Sbjct: 121 TGPLENLAS 129
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 85/149 (57%), Gaps = 10/149 (6%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
+++ ELIH RWAMLG G I EA W G + L G+ +Y G+P
Sbjct: 118 FAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP 177
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
+P +L + E++++G EY R L+ +L+PGG FDPLGLA+DP + L++ EI
Sbjct: 178 IPINLIVAVIAEIVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEI 237
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPISFVA 200
K+ RLAM A L F QA TG+GP+ +A
Sbjct: 238 KNGRLAMFAMLGFYFQAYVTGEGPVENLA 266
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 85/146 (58%), Gaps = 10/146 (6%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL---TGVAWQDAGKVEL-VEGSSYLGQPLPFSL 117
R+RE E+IH RWAMLG LG + E L VAW DAG +G YLG P +
Sbjct: 107 FSRYREIEVIHARWAMLGALGIVVPELLDQTNHVAWFDAGATIFGPKGIQYLGVPGLINA 166
Query: 118 TTLIW---IEVIVIGYIE-YQRNA--ELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
+I ++VI++G IE Y+ N + + ++YPG FDPLGLA DP L++ EI
Sbjct: 167 KNIIATVAVQVILMGAIEGYRVNGGPAGEGLDKVYPGESFDPLGLADDPDTFAELKVKEI 226
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPIS 197
K+ RLAM + F +QA TGKGPI+
Sbjct: 227 KNGRLAMFSNFGFFVQAIVTGKGPIA 252
>gi|412990175|emb|CCO19493.1| unknown [Bathycoccus prasinos]
Length = 184
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 84/138 (60%), Gaps = 7/138 (5%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFS-LTTL 120
L+RFRE EL++ RWAMLG G VEA WQ+A L S+ G LP S ++TL
Sbjct: 26 LERFREAELLNARWAMLGVAGCWGVEAGGFGTWQEA---PLAAQQSWGGIDLPISNMSTL 82
Query: 121 IWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVA 180
+ E++++ + E QR +E D KR+YPGG FDP GL+ G E+L+ EI + RLAMVA
Sbjct: 83 VGFEILLMAFAEQQRISETDVSKRMYPGGSFDPAGLSKGDG-FESLKRKEIANGRLAMVA 141
Query: 181 FL--IFGIQAAFTGKGPI 196
FL + QA G GP+
Sbjct: 142 FLGILAQNQAYPDGLGPV 159
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 83/149 (55%), Gaps = 10/149 (6%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
+++ ELIH RWAMLG G I EA W G + L G+ +Y G+P
Sbjct: 114 FAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP 173
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
+P + + E++++G EY R LD +L+PGG FDPLGLA DP + L++ EI
Sbjct: 174 IPINFILAVVAEIVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEI 233
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPISFVA 200
K+ RLAM A L F QA TG+GP+ +A
Sbjct: 234 KNGRLAMFAMLGFYFQAYVTGEGPVENLA 262
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 86/150 (57%), Gaps = 15/150 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGVA-----WQDAG-KVELVEGSSYLGQPL 113
R+RE E+IH RWAMLG LG + E A GV+ W AG ++ +G +YLG P
Sbjct: 72 FARYREIEVIHARWAMLGALGCVTPELLAKNGVSFGEAVWFKAGAQIFGSDGLNYLGNPS 131
Query: 114 ---PFSLTTLIWIEVIVIGYIE-YQRNAE---LDPVKRLYPGGYFDPLGLASDPGKLENL 166
S+ + +VI++G E Y+ N E ++ + LYPGG FDPLGLA DP L
Sbjct: 132 LVHAQSIIATLACQVILMGGAEAYRANGEGPGVEGLDSLYPGGPFDPLGLADDPDTFAEL 191
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGPI
Sbjct: 192 KTKEIKNGRLAMFSMFGFFVQAIVTGKGPI 221
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 83/149 (55%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA-------WQDAGKVELVEGS-SYLGQPL 113
+R+RE ELIH RWAMLG LG I E L W AG EG YLG P
Sbjct: 83 FKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGESVWFKAGAQIFQEGGLDYLGNPS 142
Query: 114 PF---SLTTLIWIEVIVIGYIE-YQRNAEL--DPVKRLYPGGYFDPLGLASDPGKLENLQ 167
S+ ++ +VI++G IE Y+ N + + +LYPGG FDPLGLA DP L+
Sbjct: 143 LVHAQSILAILGTQVILMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAELK 202
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGP+
Sbjct: 203 VKEIKNGRLAMFSMFGFFVQAIVTGKGPL 231
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+R+RE ELIH RWAMLG LG I E L W AG EG YLG P
Sbjct: 83 FKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYLGNPS 142
Query: 114 ---PFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ + ++VI++G +E Y+ N LDP LYPG FDPLGLA DP
Sbjct: 143 LVHAQNIVATLAVQVILMGLVEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTFA 199
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 200 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 231
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 86/150 (57%), Gaps = 12/150 (8%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQ 111
+ RE E+IH RWAMLG G I EA W G + L++G++ Y G
Sbjct: 88 FAKNRELEVIHCRWAMLGVAGFIIPEACNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGN 146
Query: 112 PLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAE 170
+P +L + EV+++G EY R LD +L+PGG FDPLGLASDP + L++ E
Sbjct: 147 SIPINLILAVIAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKE 206
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
IK+ RLAM + L F IQA TG+GP+ +A
Sbjct: 207 IKNGRLAMFSMLGFFIQAYVTGEGPVENLA 236
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+R+RE ELIH RWAMLG LG I E L W AG EG YLG P
Sbjct: 82 FKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYLGNPS 141
Query: 114 ---PFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ + ++VI++G +E Y+ N LDP LYPG FDPLGLA DP
Sbjct: 142 LVHAQNIVATLAVQVILMGLVEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTFA 198
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 199 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 230
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 82/149 (55%), Gaps = 10/149 (6%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
+++ ELIH RWAMLG G I EA W G + L G+ +Y G
Sbjct: 119 FAKYQAYELIHARWAMLGAAGFIVPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGNS 178
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
+P +L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ EI
Sbjct: 179 IPINLVVAVIAEVVLLGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEI 238
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPISFVA 200
K+ RLAM A L F QA TG+GP+ +A
Sbjct: 239 KNGRLAMFAMLGFYFQAYVTGEGPVENLA 267
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 87/151 (57%), Gaps = 12/151 (7%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQ 111
+++ ELIH RWAMLG G I EA W G + L++G++ Y G+
Sbjct: 117 FAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGK 175
Query: 112 PLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAE 170
+P +L + EV+++G EY R LD +L+PGG FDPLGLA+DP + L++ E
Sbjct: 176 NIPINLIFAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLANDPDQAALLKVKE 235
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
IK+ RLAM A L F IQA TG+GP+ +A
Sbjct: 236 IKNGRLAMFAMLGFFIQAYVTGEGPVENLAA 266
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 82/150 (54%), Gaps = 10/150 (6%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
+++ ELIH RWAMLG G I EA W G + L G+ SY G
Sbjct: 130 FDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGAS 189
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
+ +L + EVI++G EY R LD +L+PGG FDPLGLA DP + L++ EI
Sbjct: 190 IHINLIAAVVAEVILVGGAEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQFALLKVKEI 249
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
K+ RLAM + L F +QA TG+GP+ +A
Sbjct: 250 KNGRLAMFSMLGFFVQAYVTGEGPVENLAA 279
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 84/144 (58%), Gaps = 12/144 (8%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPL 113
+++ ELIH RWAMLG G I EA W G + L++G++ Y G+ +
Sbjct: 108 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNI 166
Query: 114 PFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIK 172
P +L + EV+++G EY R LD +L+PGG FDPLGLASDP + L+ EIK
Sbjct: 167 PINLVVAVIAEVVLLGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAAILKAKEIK 226
Query: 173 HARLAMVAFLIFGIQAAFTGKGPI 196
+ RLAM A L F +QA TG+GP+
Sbjct: 227 NGRLAMFAMLGFFLQAYVTGEGPV 250
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 86/151 (56%), Gaps = 12/151 (7%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQ 111
+++ ELIH RWAMLG G I EA W G + L++G++ Y G+
Sbjct: 114 FAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLYYFGK 172
Query: 112 PLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAE 170
+P +L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ E
Sbjct: 173 NIPINLVLAVIAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKE 232
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
IK+ RLAM + L F IQA TG+GP+ +A
Sbjct: 233 IKNGRLAMFSMLGFFIQAYVTGQGPVENLAA 263
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 83/149 (55%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQP- 112
+R+RE ELIH RWAMLG LG I E L W AG EG YLG P
Sbjct: 83 FKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGNPN 142
Query: 113 --LPFSLTTLIWIEVIVIGYIE-YQRNAEL--DPVKRLYPGGYFDPLGLASDPGKLENLQ 167
S+ ++ +V+++G IE Y+ N + + +LYPGG FDPLGLA DP L+
Sbjct: 143 LVHAQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAELK 202
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGP+
Sbjct: 203 VKEIKNGRLAMFSMFGFFVQAIVTGKGPL 231
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 85/152 (55%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
QR+RE ELIH RWAMLG LG + E A GV W AG EG +YLG P
Sbjct: 71 FQRYRELELIHARWAMLGALGIVTPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNPS 130
Query: 114 PF---SLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ + ++VI++G +E Y+ N LDP LYPG FDPLGLA DP
Sbjct: 131 LIHAQNIVATLAVQVILLGLVEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTFA 187
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 188 ELKVKEIKNGRLAMFSSFGFFVQAIVTGKGPI 219
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 83/153 (54%), Gaps = 21/153 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+R+RE ELIH RWAMLG LG + E L+ A W AG EG +YLG
Sbjct: 76 FKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNE 135
Query: 113 ---LPFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKL 163
S+ + +V+V+G E Y+ N LDP L+PGG FDPLGLA DP
Sbjct: 136 NLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDP---LHPGGAFDPLGLADDPDTF 192
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 193 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 225
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 83/153 (54%), Gaps = 21/153 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+R+RE ELIH RWAMLG LG + E L+ A W AG EG +YLG
Sbjct: 76 FKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNE 135
Query: 113 ---LPFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKL 163
S+ + +V+V+G E Y+ N LDP L+PGG FDPLGLA DP
Sbjct: 136 NLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDP---LHPGGAFDPLGLADDPDTF 192
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 193 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 225
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 83/153 (54%), Gaps = 21/153 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+R+RE ELIH RWAMLG LG + E L+ A W AG EG +YLG
Sbjct: 75 FKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNE 134
Query: 113 ---LPFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKL 163
S+ + +V+V+G E Y+ N LDP L+PGG FDPLGLA DP
Sbjct: 135 NLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDP---LHPGGAFDPLGLADDPDTF 191
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 192 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 224
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 83/153 (54%), Gaps = 21/153 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+R+RE ELIH RWAMLG LG + E L+ A W AG EG +YLG
Sbjct: 77 FKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNE 136
Query: 113 ---LPFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKL 163
S+ + +V+V+G E Y+ N LDP L+PGG FDPLGLA DP
Sbjct: 137 NLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDP---LHPGGAFDPLGLADDPDTF 193
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 194 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 226
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 84/156 (53%), Gaps = 17/156 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELV----------EGSSYLGQ 111
R+RE E+IH RWAMLG LG + E L D G+ + +G +YLG
Sbjct: 74 FARYREIEVIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFSDDGLNYLGN 133
Query: 112 PLPF---SLTTLIWIEVIVIGYIEYQRNAELDPVK----RLYPGGYFDPLGLASDPGKLE 164
P S+ ++ +++++G E R A PV+ LYPGG FDPLGLA DP L
Sbjct: 134 PSLIHAQSIVAVLLTQLVIMGAAEAYRYAGEGPVETSGDSLYPGGAFDPLGLADDPDTLA 193
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGK P+ +A
Sbjct: 194 ELKVKELKNGRLAMFSMFGFFVQALITGKSPLENLA 229
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 83/153 (54%), Gaps = 21/153 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+R+RE ELIH RWAMLG LG + E L+ A W AG EG +YLG
Sbjct: 76 FKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNE 135
Query: 113 ---LPFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKL 163
S+ + +V+V+G E Y+ N LDP L+PGG FDPLGLA DP
Sbjct: 136 NLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDP---LHPGGAFDPLGLADDPDTF 192
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 193 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 225
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+R+RE ELIH RWAMLG LG + E L W AG EG YLG P
Sbjct: 80 FKRYRELELIHARWAMLGALGCLTPELLAKNGTKFGEAVWFKAGAQIFSEGGLDYLGNPS 139
Query: 114 ---PFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ + ++VI++G IE Y+ N LDP LYPG FDPLGLA DP
Sbjct: 140 LVHAQNIVATLAVQVILMGLIEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTFA 196
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 197 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPV 228
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 83/153 (54%), Gaps = 21/153 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+R+RE ELIH RWAMLG LG + E L+ A W AG EG +YLG
Sbjct: 95 FKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNE 154
Query: 113 ---LPFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKL 163
S+ + +V+V+G E Y+ N LDP L+PGG FDPLGLA DP
Sbjct: 155 NLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDP---LHPGGAFDPLGLADDPDTF 211
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 212 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 244
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 83/149 (55%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQP- 112
+R+RE ELIH RWAMLG LG I E L W AG EG YLG P
Sbjct: 83 FKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGNPN 142
Query: 113 --LPFSLTTLIWIEVIVIGYIE-YQRNAEL--DPVKRLYPGGYFDPLGLASDPGKLENLQ 167
S+ ++ +V+++G IE Y+ N + + +LYPGG FDPLGLA DP L+
Sbjct: 143 LVHAQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAELK 202
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGP+
Sbjct: 203 VKEIKNGRLAMFSMFGFFVQAIVTGKGPL 231
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+R+RE ELIH RWAMLG LG + E L W AG EG YLG P
Sbjct: 80 FKRYRELELIHARWAMLGALGCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPS 139
Query: 114 ---PFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ + ++VI++G IE Y+ N LDP LYPG FDPLGLA DP
Sbjct: 140 LVHAQNIVATLAVQVILMGLIEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTFA 196
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 197 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPV 228
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 85/153 (55%), Gaps = 14/153 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAELDP---VKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW ++VI++G +E R A P V LYPGG FDPLGLA DP L+
Sbjct: 151 LVHAQSILAIWAVQVILMGAVEGYRIAGGPPGEVVDPLYPGGSFDPLGLAEDPEAFAELK 210
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
+ E+K+ RLAM + F +QA TGKGPI +A
Sbjct: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 243
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+R+RE ELIH RWAMLG LG + E L W AG EG YLG P
Sbjct: 79 FKRYRELELIHARWAMLGALGCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPS 138
Query: 114 ---PFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ + ++VI++G IE Y+ N LDP LYPG FDPLGLA DP
Sbjct: 139 LVHAQNIVATLAVQVILMGLIEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTFA 195
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 196 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPV 227
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 85/154 (55%), Gaps = 15/154 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG +G YLG P
Sbjct: 92 FARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENL 166
++ IW +VI++G +E R A +P+ LYPGG FDPLGLA+DP L
Sbjct: 152 LVHAQSILAIWATQVILMGAVEGYRVAGNEPLGEAEDLLYPGGSFDPLGLATDPEAFAEL 211
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++ E+K+ RLAM + F +QA TGKGPI +A
Sbjct: 212 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 245
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 84/153 (54%), Gaps = 14/153 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--------GVAWQDAGKVELVEGSSYLGQPL 113
R+RE E+IH RWAMLG LG + E L V W+ ++ G YLG P
Sbjct: 77 FARYREIEVIHARWAMLGALGCVTPELLAKNGVSFGEAVWWKAGSQIFAPGGLDYLGNPS 136
Query: 114 PF---SLTTLIWIEVIVIGYIE-YQRNA--ELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
S+ +++ +V+++G IE Y+ N + + LYPG FDPLGLA DP L+
Sbjct: 137 LIHAQSIIAIVFSQVLLMGLIEGYRVNGGPAGEGLDALYPGEAFDPLGLADDPDTFAELR 196
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
+ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 197 VKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 229
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQP- 112
+R+RE ELIH RWAMLG LG I E L W AG EG +YLG
Sbjct: 72 FKRYRELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGSQIFAEGGLNYLGNEN 131
Query: 113 --LPFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
S+ + +V+V+G E Y+ N LDP L+PGG FDPLGLA DP
Sbjct: 132 LVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDP---LHPGGAFDPLGLADDPDTFA 188
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 189 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 220
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+R+RE ELIH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 81 FKRYRELELIHARWAMLGALGCVTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPS 140
Query: 114 ---PFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ + +VI++G +E Y+ N LDP LYPG FDPLGLA DP
Sbjct: 141 LVHAQNIVATLACQVILMGLVEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTFA 197
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 198 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 229
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 83/153 (54%), Gaps = 21/153 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT---GVA-----WQDAGKVELVEGS-SYLGQP 112
+R+RE ELIH RWAMLG LG + E L+ GV+ W AG EG YLG
Sbjct: 79 FRRYRELELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNA 138
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKL 163
S+ ++ +V+++G IE R LDP LYPG FDPLGLA DP
Sbjct: 139 NLVHAQSILAILGCQVVLMGAIEAYRVNGGPLGEGLDP---LYPGDKFDPLGLADDPDTF 195
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 196 AELKIKEIKNGRLAMFSMFGFFVQAVVTGKGPI 228
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 86/153 (56%), Gaps = 21/153 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT---GVAWQDA------GKVELVEGSSYLGQP 112
R+RE E+IH RWA+LGTLG + E L GV +Q+A ++ +G +YLG P
Sbjct: 78 FSRYREIEVIHSRWALLGTLGIVTPELLEKYGGVKFQEAVWFKAGAQIFSADGLNYLGNP 137
Query: 113 L---PFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKL 163
S+ + +VI++G E Y+ N DP LYPGG FDPLGLA DP
Sbjct: 138 SLVHAQSIIATVATQVILLGLAEGYRVNGGPAGEITDP---LYPGGAFDPLGLADDPDTF 194
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLA A L F +QA TGKGPI
Sbjct: 195 AELKVKEIKNGRLAQFAALGFFVQAIVTGKGPI 227
>gi|361068437|gb|AEW08530.1| Pinus taeda anonymous locus CL265Contig2_04 genomic sequence
gi|383130109|gb|AFG45764.1| Pinus taeda anonymous locus CL265Contig2_04 genomic sequence
gi|383130111|gb|AFG45765.1| Pinus taeda anonymous locus CL265Contig2_04 genomic sequence
gi|383130113|gb|AFG45766.1| Pinus taeda anonymous locus CL265Contig2_04 genomic sequence
gi|383130115|gb|AFG45767.1| Pinus taeda anonymous locus CL265Contig2_04 genomic sequence
gi|383130117|gb|AFG45768.1| Pinus taeda anonymous locus CL265Contig2_04 genomic sequence
gi|383130119|gb|AFG45769.1| Pinus taeda anonymous locus CL265Contig2_04 genomic sequence
gi|383130121|gb|AFG45770.1| Pinus taeda anonymous locus CL265Contig2_04 genomic sequence
gi|383130123|gb|AFG45771.1| Pinus taeda anonymous locus CL265Contig2_04 genomic sequence
gi|383130125|gb|AFG45772.1| Pinus taeda anonymous locus CL265Contig2_04 genomic sequence
gi|383130127|gb|AFG45773.1| Pinus taeda anonymous locus CL265Contig2_04 genomic sequence
gi|383130129|gb|AFG45774.1| Pinus taeda anonymous locus CL265Contig2_04 genomic sequence
gi|383130131|gb|AFG45775.1| Pinus taeda anonymous locus CL265Contig2_04 genomic sequence
gi|383130133|gb|AFG45776.1| Pinus taeda anonymous locus CL265Contig2_04 genomic sequence
gi|383130135|gb|AFG45777.1| Pinus taeda anonymous locus CL265Contig2_04 genomic sequence
gi|383130137|gb|AFG45778.1| Pinus taeda anonymous locus CL265Contig2_04 genomic sequence
gi|383130139|gb|AFG45779.1| Pinus taeda anonymous locus CL265Contig2_04 genomic sequence
gi|383130141|gb|AFG45780.1| Pinus taeda anonymous locus CL265Contig2_04 genomic sequence
Length = 68
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
Query: 134 QRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
QRNAE+DP RLYPGG YFDP GLA+D K + L+LAEIKHARLAMVAFLIF IQAA T
Sbjct: 1 QRNAEVDPETRLYPGGKYFDPFGLAADETKKDRLKLAEIKHARLAMVAFLIFAIQAAVTS 60
Query: 193 KGPIS 197
KGP++
Sbjct: 61 KGPLT 65
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 82/152 (53%), Gaps = 17/152 (11%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELV----------EGSSYLGQ 111
R+RE ELIH RWA+LG LG + E L D G+ + +G +YLG
Sbjct: 79 FARYREIELIHSRWALLGALGILTPEYLQRSGAVDFGEAAVWFKAGASIFGDDGLNYLGN 138
Query: 112 PLPF---SLTTLIWIEVIVIGYIEYQRNAELDPVK----RLYPGGYFDPLGLASDPGKLE 164
P S+ + +++++G E R A PV +LYPGG+FDPLGL DP L
Sbjct: 139 PQLIHAQSIVATLLAQIVLVGTAEAYRYAGEGPVDTSGDKLYPGGFFDPLGLGDDPEALA 198
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLA V+ F +QA TGKGP+
Sbjct: 199 ELKVKEIKNGRLAQVSVFGFFVQALVTGKGPL 230
>gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-binding protein of photosystem II
[Cryptomeria japonica]
Length = 266
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 89/168 (52%), Gaps = 22/168 (13%)
Query: 50 PTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVEL 102
P QP E F + RE E+IH RWAMLG LG + E L+ GV W AG
Sbjct: 82 PPVCQPDPETFA--KNRELEVIHARWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIF 139
Query: 103 VEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFD 152
EG YLG P ++ IW +VI++G +E R A DP LYPGG FD
Sbjct: 140 SEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEITDP---LYPGGSFD 196
Query: 153 PLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
PLGLA DP L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 197 PLGLADDPEAFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPLENLA 244
>gi|154357560|gb|ABS78804.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 86/147 (58%), Gaps = 12/147 (8%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLP 114
++ ELIH RWAMLG G I EAL W G + L++G++ Y G+ +P
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIP 59
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKH 173
+L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ EIK+
Sbjct: 60 INLVLAVIAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKN 119
Query: 174 ARLAMVAFLIFGIQAAFTGKGPISFVA 200
RLAM A L F IQA TG+GP+ +A
Sbjct: 120 GRLAMFAMLGFFIQAYVTGEGPVENLA 146
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQP- 112
+R+RE ELIH RWAMLG LG I E L W AG EG +YLG
Sbjct: 55 FKRYRELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGSQIFAEGGLNYLGNEN 114
Query: 113 --LPFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
S+ + +V+V+G E Y+ N LDP L+PGG FDPLGLA DP
Sbjct: 115 LVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDP---LHPGGAFDPLGLADDPDTFA 171
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 172 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 203
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 84/150 (56%), Gaps = 17/150 (11%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQPLP 114
R+RE ELIH RWA+LG LG + E L+ A W AG +G +YLG
Sbjct: 78 RYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESL 137
Query: 115 F---SLTTLIWIEVIVIGYIE-YQRNAE----LDPVKRLYPGGYFDPLGLASDPGKLENL 166
S+ + ++V+++G E Y+ N LD + LYPGG FDPLGLA DP L
Sbjct: 138 IHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAEL 197
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM + L F +QA TGKGP+
Sbjct: 198 KVKEIKNGRLAMFSCLGFFVQAIVTGKGPV 227
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENL 166
++ IW +VI++G +E R A P+ LYPGG FDPLGLA+DP L
Sbjct: 151 LVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAEL 210
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 211 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 83/150 (55%), Gaps = 15/150 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGVA-----WQDAG-KVELVEGSSYLGQPL 113
R+RE E+IH RWAMLG LG + E A GV+ W AG ++ +G +YLG
Sbjct: 77 FARYREIEVIHARWAMLGALGCVTPELLAKNGVSFGEAVWFKAGAQIFGSDGLNYLGNSS 136
Query: 114 ---PFSLTTLIWIEVIVIGYIEYQRNAELDP----VKRLYPGGYFDPLGLASDPGKLENL 166
S+ + +VI++G E R A P + LYPGG FDPLGLA DP L
Sbjct: 137 LVHAQSIIATLACQVILMGGAEAYRAAGEGPGLEGLDSLYPGGPFDPLGLADDPDTFSEL 196
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 197 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 226
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 84/150 (56%), Gaps = 17/150 (11%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQPLP 114
R+RE ELIH RWA+LG LG + E L+ A W AG +G +YLG
Sbjct: 78 RYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESL 137
Query: 115 F---SLTTLIWIEVIVIGYIE-YQRNAE----LDPVKRLYPGGYFDPLGLASDPGKLENL 166
S+ + ++V+++G E Y+ N LD + LYPGG FDPLGLA DP L
Sbjct: 138 IHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAEL 197
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM + L F +QA TGKGP+
Sbjct: 198 KVKEIKNGRLAMFSCLGFFVQAIVTGKGPV 227
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQP- 112
+R+RE ELIH RWAMLG LG I E L W AG EG +YLG
Sbjct: 75 FKRYRELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGAQIFAEGGLNYLGNEN 134
Query: 113 --LPFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
S+ + +V+V+G E Y+ N LDP L+PGG FDPLGLA DP
Sbjct: 135 LIHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDP---LHPGGAFDPLGLADDPDTFA 191
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 192 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 223
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+R+RE ELIH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 80 FKRYRELELIHARWAMLGALGCVTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPS 139
Query: 114 ---PFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ + +VI++G +E Y+ N LDP LYPG FDPLGLA DP
Sbjct: 140 LVHAQNIVATLACQVILMGLVEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTFA 196
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 197 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 228
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 83/153 (54%), Gaps = 21/153 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT---GVA-----WQDAGKVELVEGS-SYLGQP 112
+R+RE ELIH RWAMLG LG + E L+ GV+ W AG EG YLG
Sbjct: 79 FRRYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNA 138
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKL 163
S+ ++ +V+++G IE R LDP LYPG FDPLGLA DP
Sbjct: 139 NLVHAQSILAILGCQVVLMGAIEAYRVNGGPLGEGLDP---LYPGDKFDPLGLADDPDTF 195
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 196 AELKIKEIKNGRLAMFSMFGFYVQAVVTGKGPI 228
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENL 166
++ IW +VI++G +E R A P+ LYPGG FDPLGLA+DP L
Sbjct: 151 LVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLAADPEAFAEL 210
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 211 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 85/151 (56%), Gaps = 15/151 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA-------WQDAGKVELVEGS-SYLGQP- 112
+R+RE ELIH RWAMLG LG I E L W AG EG YLG P
Sbjct: 94 FKRYRELELIHARWAMLGALGCITPELLAKNGTPIVEPVWFKAGAQIFAEGGLDYLGNPG 153
Query: 113 --LPFSLTTLIWIEVIVIGYIE-YQRNA--ELDPVKRLYPGG-YFDPLGLASDPGKLENL 166
S+ + ++VI++G IE Y+ N + + +L+PGG +FDPLGLA DP L
Sbjct: 154 LVHAQSILATLAVQVILMGAIEGYRVNGGPAGEGLDKLHPGGQFFDPLGLAEDPDAFAEL 213
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
++ EIK+ RLAM + F +QA TGKGP++
Sbjct: 214 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLA 244
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQP- 112
+R+RE ELIH RWAMLG LG I E L W AG EG +YLG
Sbjct: 75 FKRYRELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGAQIFAEGGLNYLGNEN 134
Query: 113 --LPFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
S+ + +V+V+G E Y+ N LDP L+PGG FDPLGLA DP
Sbjct: 135 LIHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDP---LHPGGAFDPLGLADDPDTFA 191
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 192 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 223
>gi|388506626|gb|AFK41379.1| unknown [Lotus japonicus]
Length = 147
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 82/129 (63%), Gaps = 4/129 (3%)
Query: 77 MLGTLGAIAVEALTGVAWQDAGKVELVEG--SSYLGQPLPF-SLTTLIWIEVIVIGYIEY 133
ML G + EAL W A + + G ++YLG P+P+ +L T++ IE + I ++E+
Sbjct: 1 MLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEH 60
Query: 134 QRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGI-QAAFTG 192
QR+ E DP K+ YPGG FDPLG + DP K ++ EIK+ RLA++AF+ F + Q+A+ G
Sbjct: 61 QRSMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPG 120
Query: 193 KGPISFVAT 201
GP+ +AT
Sbjct: 121 TGPLENLAT 129
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+R+RE ELIH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 80 FKRYRELELIHARWAMLGALGCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPS 139
Query: 114 ---PFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ + +VI++G +E Y+ N LDP LYPG FDPLGLA DP
Sbjct: 140 LVHAQNIVATLACQVILMGLVEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTFA 196
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 197 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 228
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+R+RE ELIH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 80 FKRYRELELIHARWAMLGALGCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPS 139
Query: 114 ---PFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ + +VI++G +E Y+ N LDP LYPG FDPLGLA DP
Sbjct: 140 LVHAQNIVATLACQVILMGLVEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTFA 196
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 197 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 228
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+R+RE ELIH RWAMLG LG + E L W AG EG YLG P
Sbjct: 83 FKRYRELELIHARWAMLGALGCLTPELLAKNGTQFGEAVWFKAGAQIFSEGGLDYLGNPS 142
Query: 114 ---PFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ + +VI++G +E Y+ N LDP LYPG FDPLGLA DP
Sbjct: 143 LVHAQNIVATLACQVILMGLVEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTFA 199
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 200 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPV 231
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+R+RE ELIH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 80 FKRYRELELIHARWAMLGALGCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPS 139
Query: 114 ---PFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ + +VI++G +E Y+ N LDP LYPG FDPLGLA DP
Sbjct: 140 LVHAQNIVATLACQVILMGLVEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTFA 196
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 197 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 228
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 85/152 (55%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPL 113
+R+RE ELIH RWAMLG LG + E L GV W AG EG +YLG P
Sbjct: 80 FKRYRELELIHARWAMLGALGIVTPELLQKNGVQFGEAVWFKAGAQIFQEGGLNYLGNPS 139
Query: 114 PF---SLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ + ++V+++G +E Y+ N LDP LYPG FDPLGLA DP
Sbjct: 140 LIHAQNIVATLAVQVVLLGLVEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTFA 196
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 197 ELKVKEIKNGRLAMFSSFGFFVQAIVTGKGPI 228
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 82/149 (55%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
R RE ELIH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 89 FARNRELELIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 148
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW ++V+++G++E R + + ++YPGG FDPLGLA DP L+
Sbjct: 149 LVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELK 208
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM + F +QA TGKGPI
Sbjct: 209 VKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG +G YLG P
Sbjct: 92 FARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENL 166
++ IW +VI++G +E R A P+ LYPGG FDPLGLA+DP L
Sbjct: 152 LVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAEL 211
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++ E+K+ RLAM + F +QA TGKGPI +A
Sbjct: 212 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 245
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 99/198 (50%), Gaps = 31/198 (15%)
Query: 30 LAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEAL 89
+A++++ LL T G+ PL + L +++ EL+H RWAML GAI E L
Sbjct: 62 MARDEINPLLNG-TLPGDYGYDPLGLAKDAETLSKYQANELLHARWAMLAAAGAIIPEGL 120
Query: 90 T-------GVAWQDAGKVELVEGS-SYLGQPL-----PFSLTTLIWIEVIVIGYIE-YQR 135
G W + G L G+ ++ P+ P L ++ V ++G E Y+R
Sbjct: 121 AANGADVKGATWFETGAAMLNGGTLNWFAVPIANISNPLPLFVVVAANVALMGAAENYRR 180
Query: 136 NAE----------------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMV 179
E D + LYPGG FDPLGLA DP L L++ EIK+ RLAMV
Sbjct: 181 TGEGPAGYSPGVGKFDESAYDSMDSLYPGGPFDPLGLADDPEVLAELKVKEIKNGRLAMV 240
Query: 180 AFLIFGIQAAFTGKGPIS 197
+FL F +QAA TG+GP +
Sbjct: 241 SFLGFAVQAAVTGEGPYA 258
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 82/150 (54%), Gaps = 17/150 (11%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALT---------GVAWQDAGKVELVEGS-SYLGQP- 112
R+R E+IH RWA+LG LG + E L W AG EG +YLG P
Sbjct: 86 RYRTIEVIHARWALLGALGIVTPEILAQNGVPFSGDAAIWFKAGSEIFKEGGLNYLGNPN 145
Query: 113 --LPFSLTTLIWIEVIVIGYIE-YQRNAE---LDPVKRLYPGGYFDPLGLASDPGKLENL 166
S+ + ++VIV+G E ++ N E ++ + LYPGG FDPLGLA DP L
Sbjct: 146 LIHAQSILATLAVQVIVMGAAEGFRANGEAPGVEGLDTLYPGGPFDPLGLADDPDTFAEL 205
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM A F +QA TGKGPI
Sbjct: 206 KVKEIKNGRLAMFACFGFFVQAIVTGKGPI 235
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 69 FAKNRELEVIHCRWAMLGALGCVFPEVLSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 128
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW ++V+++G++E R LDP+ YPGG FDPLGLA DP
Sbjct: 129 LIHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPI---YPGGAFDPLGLADDPDAFA 185
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 186 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 217
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG +G YLG P
Sbjct: 92 FARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENL 166
++ IW +VI++G +E R A P+ LYPGG FDPLGLA+DP L
Sbjct: 152 LVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAEL 211
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++ E+K+ RLAM + F +QA TGKGPI +A
Sbjct: 212 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 245
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 81/148 (54%), Gaps = 20/148 (13%)
Query: 66 RECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPFSL 117
RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 95 RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 154
Query: 118 TTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQL 168
++ IW ++V+++G++E R LDP+ YPGG FDPLGLA DP L++
Sbjct: 155 QSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPI---YPGGAFDPLGLADDPDAFAELKV 211
Query: 169 AEIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM + F +QA TGKGPI
Sbjct: 212 KEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 85/150 (56%), Gaps = 17/150 (11%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAG-KVELVEGSSYLGQPLP 114
R+RE ELIH RWA+LG LG + E L+ A W AG ++ G +YLG
Sbjct: 78 RYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFAAGGLNYLGNESL 137
Query: 115 F---SLTTLIWIEVIVIGYIE-YQRNAE----LDPVKRLYPGGYFDPLGLASDPGKLENL 166
S+ + ++V+++G E Y+ N LD + LYPGG FDPLGLA DP L
Sbjct: 138 IHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAEL 197
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM + L F +QA TGKGP+
Sbjct: 198 KVKEIKNGRLAMFSCLGFFVQAIVTGKGPV 227
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG +G YLG P
Sbjct: 58 FARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPS 117
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENL 166
++ IW +VI++G +E R A P+ LYPGG FDPLGLA+DP L
Sbjct: 118 LVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAEL 177
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++ E+K+ RLAM + F +QA TGKGPI +A
Sbjct: 178 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 211
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG +G YLG P
Sbjct: 74 FARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPS 133
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENL 166
++ IW +VI++G +E R A P+ LYPGG FDPLGLA+DP L
Sbjct: 134 LVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAEL 193
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++ E+K+ RLAM + F +QA TGKGPI +A
Sbjct: 194 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 227
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG +G YLG P
Sbjct: 87 FARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPS 146
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENL 166
++ IW +VI++G +E R A P+ LYPGG FDPLGLA+DP L
Sbjct: 147 LVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAEL 206
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++ E+K+ RLAM + F +QA TGKGPI +A
Sbjct: 207 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 240
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG +G YLG P
Sbjct: 87 FARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPS 146
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENL 166
++ IW +VI++G +E R A P+ LYPGG FDPLGLA+DP L
Sbjct: 147 LVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAEL 206
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++ E+K+ RLAM + F +QA TGKGPI +A
Sbjct: 207 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 240
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 84/150 (56%), Gaps = 12/150 (8%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQ 111
+++ ELIH RWAMLG G I EA W G + L++G++ Y G
Sbjct: 115 FTKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGN 173
Query: 112 PLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAE 170
+P +L + EV+++G EY R L+ +L+PGG FDPLGLA DP + L++ E
Sbjct: 174 NIPINLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKE 233
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
IK+ RLAM A L F QA TG+GP+ +A
Sbjct: 234 IKNGRLAMFAMLGFYFQAYVTGEGPVENLA 263
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 97/207 (46%), Gaps = 55/207 (26%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD G+DP GLGK E N AK
Sbjct: 92 VAGDYGYDPFGLGKKPE-----------NFAK---------------------------- 112
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS--SYLG 110
++ ELIH RWAMLG G I EAL W G + L++G+ SY G
Sbjct: 113 ----YQAFELIHARWAMLGAAGCIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLSYFG 167
Query: 111 QPLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
+ +P +L + EV+++G EY R LD +L+PGG FDPL LA DP + L++
Sbjct: 168 KNIPINLVLAVVGEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLDLAKDPEQGALLKVK 227
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM + F IQA TG+GP+
Sbjct: 228 EIKNGRLAMFSMFAFFIQAYVTGEGPV 254
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 82/150 (54%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 92 KNRELEVIHSRWAMLGALGCVFPELLSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLV 151
Query: 116 SLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW ++V+++G+IE R LDP LYPGG FDPLGLA DP L
Sbjct: 152 HAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDP---LYPGGAFDPLGLADDPDAFAEL 208
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ E+K+ RLAM + F +QA TGKGP+
Sbjct: 209 KVKELKNGRLAMFSMFGFFVQAIVTGKGPV 238
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 83/155 (53%), Gaps = 23/155 (14%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAG-KVELVEGSSYLGQP 112
L R+RE E+IH RWAMLG LG + E L G W AG ++ +G +YLG P
Sbjct: 139 LARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNP 198
Query: 113 LPFSLTTLIWI---EVIVIGYIEYQR--------NAELDPVKRLYPGGYFDPLGLASDPG 161
+++ + ++G +E R ELD LYPGG FDPLGLA+DP
Sbjct: 199 SLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFGRELD---TLYPGGPFDPLGLANDPD 255
Query: 162 KLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L L++ E+K+ RLAMVA L F +Q T GP+
Sbjct: 256 ALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 290
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 80/150 (53%), Gaps = 18/150 (12%)
Query: 62 LQRFRECELIHGRWAMLGT---LGAIAVEALTGVAWQDAG-KVELVEGSSYLGQPLPFSL 117
L R+RE E+IH RWAML T L V G W AG ++ +G +YLG P
Sbjct: 374 LARYREAEVIHARWAMLVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHA 433
Query: 118 TTLIWI---EVIVIGYIEYQR--------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
+++ + ++G +E R ELD LYPGG FDPLGLA+DP L L
Sbjct: 434 QSVVLTFLSTLAIMGAVEAYRYGGGVGDFGRELD---TLYPGGPFDPLGLANDPDALAEL 490
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ E+K+ RLAMVA L F +Q T GP+
Sbjct: 491 KVKELKNGRLAMVAMLGFYVQPLVTKAGPV 520
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 38/55 (69%)
Query: 142 VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ LYPGG FDPLGLA+DP L L++ E+K+ RLAMVA L F +Q T GP+
Sbjct: 1 LDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 55
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 80/154 (51%), Gaps = 18/154 (11%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--------GVAWQDAGKVELVE-GSSYLGQP 112
R+RE ELIH RWAMLG LG + E L G W AG + G +YLG P
Sbjct: 71 FARYREIELIHARWAMLGALGCVVPELLAKNGTPLPDGGVWFKAGAAIFADDGLNYLGNP 130
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKL 163
S+ + +V+V+G E R L+ RLYPG FDP+GLA DP
Sbjct: 131 NLIHAQSILATLAFQVVVMGAAESFRFNGGAPGGFLEGNDRLYPGDQFDPMGLAEDPDTF 190
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
L++ EIK+ RLAM + F +QA TG+GPI+
Sbjct: 191 AELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIA 224
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 81/149 (54%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A +GV W AG EG YLG P
Sbjct: 94 FARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 153
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +VI++G +E R A D +YPGG FDPLGLA DP L+
Sbjct: 154 LVHAQSILAIWACQVILMGAVEGYRVAGGPLGDVTDPIYPGGSFDPLGLADDPDTFAELK 213
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGP+
Sbjct: 214 VKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 82/150 (54%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
R RE E+IH RWAMLG LG E L GV W AG EG YLG P
Sbjct: 93 RNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLI 152
Query: 116 SLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW ++V+++G++E R LDP+ YPGG FDPLGLA DP L
Sbjct: 153 HAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPI---YPGGAFDPLGLADDPDAFAEL 209
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+R+RE ELIH RWAMLG LG + E L W AG EG YLG P
Sbjct: 80 FKRYRELELIHARWAMLGALGCLTPELLAKNGTKFGEAVWFKAGAQIFSEGGLDYLGNPS 139
Query: 114 ---PFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ + +VI++G IE Y+ N LDP LYPG FDPLGLA DP
Sbjct: 140 LVHAQNIVATLACQVILMGLIEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTFA 196
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ E+K+ RLAM + F +QA TGKGP+
Sbjct: 197 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPV 228
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 81/150 (54%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG I E L+ W AG EG YLG P
Sbjct: 92 KNRELEVIHARWAMLGALGCIFPELLSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLI 151
Query: 116 SLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW +V+++G+IE R LDP LYPGG FDPLGLA DP L
Sbjct: 152 HAQSILAIWATQVVLMGFIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFAEL 208
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 209 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 238
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 82/149 (55%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQP- 112
+R+RE ELIH RWAMLG LG I E L W AG EG YLG
Sbjct: 76 FKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGNSN 135
Query: 113 --LPFSLTTLIWIEVIVIGYIE-YQRNAEL--DPVKRLYPGGYFDPLGLASDPGKLENLQ 167
S+ ++ +V+++G IE Y+ N + + +LYPGG FDPLGLA DP L+
Sbjct: 136 LVHAQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFSELK 195
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGP+
Sbjct: 196 VKEIKNGRLAMFSMFGFFVQAIVTGKGPL 224
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 82/150 (54%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
R RE E+IH RWAMLG LG E L GV W AG EG YLG P
Sbjct: 93 RNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLI 152
Query: 116 SLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW ++V+++G++E R LDP+ YPGG FDPLGLA DP L
Sbjct: 153 HAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPI---YPGGAFDPLGLADDPDAFAEL 209
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 83/150 (55%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
R RE E+IH RWAMLG LG + E L GV W AG EG YLG P
Sbjct: 93 RNRELEVIHSRWAMLGALGIVFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 152
Query: 116 SLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW ++V+++G++E R LDP+ YPGG FDPLGLA DP L
Sbjct: 153 HAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPI---YPGGAFDPLGLADDPDAFAEL 209
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 210 KVKELKNGRLAMFSVFGFFVQAIVTGKGPI 239
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A +GV W AG EG YLG P
Sbjct: 93 FARNRELEVIHARWAMLGALGCVTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVTDPI---YPGGSFDPLGLADDPDTFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 81/150 (54%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
R RE E+IH RWAMLG LG E L GV W AG EG YLG P
Sbjct: 93 RNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLI 152
Query: 116 SLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW +V+++G++E R LDP LYPGG FDPLGLA DP L
Sbjct: 153 HAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPDSFAEL 209
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 82/150 (54%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
R RE E+IH RWAMLG LG E L GV W AG EG YLG P
Sbjct: 93 RNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 152
Query: 116 SLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW ++V+++G++E R LDP+ YPGG FDPLGLA DP L
Sbjct: 153 HAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPI---YPGGAFDPLGLADDPDAFAEL 209
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 81/149 (54%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A +GV W AG EG YLG P
Sbjct: 93 FARNRELEVIHARWAMLGALGCVTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +VI++G +E R A D +YPGG FDPLGLA DP L+
Sbjct: 153 LVHAQSILAIWASQVILMGAVEGYRVAGGPLGDVTDPIYPGGSFDPLGLADDPDTFAELK 212
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGP+
Sbjct: 213 VKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 82/149 (55%), Gaps = 16/149 (10%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQPLP 114
R R ELIHGRWAMLG LG I E L + W AG +G YLG P
Sbjct: 92 RNRALELIHGRWAMLGALGCITPELLQKYSRVTLKEPVWFKAGAQIFSDGGLDYLGNPNL 151
Query: 115 FSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR---LYPGG-YFDPLGLASDPGKLENLQ 167
++ +W ++V+++G +E R L V LYPGG YFDPLGLA DP L L+
Sbjct: 152 IHAQSILAVWAVQVVLMGAVEAYRTNGLPGVGEGGDLYPGGKYFDPLGLADDPETLAELK 211
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM + F +QA TGKGP+
Sbjct: 212 VKELKNGRLAMFSMFGFFVQAIVTGKGPL 240
>gi|157987285|gb|ABW07804.1| light-harvesting chlorphyll binding protein 3 [Solenostemon
scutellarioides]
Length = 193
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 80/149 (53%), Gaps = 16/149 (10%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTGV--------AWQDAGKVELVEGS-SYLGQP-- 112
+ R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 18 KNRALEVIHGRWAMLGALGCITPEVLQKWLNVTFKEPVWFKAGAQIFTEGGLDYLGNPNL 77
Query: 113 -LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLENLQ 167
S+ ++ +V+V+G +E R LD V LYPGG YFDPLGLA DP L+
Sbjct: 78 VHAQSILAVLGFQVVVMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELK 137
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGP+
Sbjct: 138 VKEIKNGRLAMFSMFGFFVQAIVTGKGPL 166
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG E L GV W AG EG YLG P
Sbjct: 91 FARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPN 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G++E R LDP LYPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPDSFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 81/149 (54%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A +GV W AG EG YLG P
Sbjct: 92 FARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +VI++G +E R A D +YPGG FDPLGLA DP L+
Sbjct: 152 LVHAQSILAIWASQVILMGAVEGYRVAGGPLGDVTDPIYPGGSFDPLGLADDPDTFAELK 211
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGP+
Sbjct: 212 VKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPN 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G++E R LDP+ YPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPI---YPGGAFDPLGLADDPDAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 85/150 (56%), Gaps = 12/150 (8%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQ 111
++++ ELIH RWAMLG G I EA W G + L++G++ Y G+
Sbjct: 117 FEKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGK 175
Query: 112 PLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAE 170
+P +L + EVI++G EY R L +L+PGG FDPLGLA DP + L++ E
Sbjct: 176 NIPINLVLAVVAEVILVGGAEYFRITNGLGFDDKLHPGGPFDPLGLAKDPDQAALLKVKE 235
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
IK+ RLAM A L F QA TG+GP+ +A
Sbjct: 236 IKNGRLAMFAMLGFFFQAYVTGEGPVENLA 265
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 80/151 (52%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
R R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 92 FARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNP 151
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +VI++G +E R LD V LYPGG YFDPLGLA DP
Sbjct: 152 NLVHAQSILAVLGFQVILMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAE 211
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 81/147 (55%), Gaps = 14/147 (9%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
R RE E+IH RWAMLG LG + E A +GV W AG EG YLG P
Sbjct: 95 RNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLV 154
Query: 116 SLTTL--IW-IEVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
++ IW +VI++G +E R A D +YPGG FDPLGLA DP L++
Sbjct: 155 HAQSILAIWACQVILMGAVEGYRVAGGPLGDVTDPIYPGGSFDPLGLADDPDTFAELKVK 214
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM + F +QA TGKGP+
Sbjct: 215 EIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 80/151 (52%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
R R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 96 FARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNP 155
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +VI++G +E R LD V LYPGG YFDPLGLA DP
Sbjct: 156 NLVHAQSILAVLGFQVILMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAE 215
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 216 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 246
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 83/155 (53%), Gaps = 23/155 (14%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAG-KVELVEGSSYLGQP 112
L R+RE E+IH RWAMLG LG + E L G W AG ++ +G +YLG P
Sbjct: 433 LARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNP 492
Query: 113 LPFSLTTLIWI---EVIVIGYIEYQR--------NAELDPVKRLYPGGYFDPLGLASDPG 161
+++ + ++G +E R ELD LYPGG FDPLGLA+DP
Sbjct: 493 SLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFGRELD---TLYPGGPFDPLGLANDPD 549
Query: 162 KLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L L++ E+K+ RLAMVA L F +Q T GP+
Sbjct: 550 ALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 584
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 78/151 (51%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGV--------AWQDAGKVELVEGS-SYLGQP 112
QR+R+ EL +GRWAMLG LG +A E L+ V W G L GS YL P
Sbjct: 198 FQRYRDAELQNGRWAMLGVLGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANP 257
Query: 113 LPFSLTTLIWIEVIVIGYI---EYQRNAELDPV----KRLYPGGYFDPLGLASDPGKLEN 165
+ L+ V+ + + E R A P+ + YPGG FDPLGL+ DP
Sbjct: 258 KLIHASNLLLTLVLELVFFFAAETWREAGEGPLGKAQDKSYPGGVFDPLGLSKDPAAFAE 317
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ E+K+ RLAM+A L +QA TG+ P+
Sbjct: 318 AKVKEVKNGRLAMLAMLGLFVQAGVTGQSPL 348
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 15/118 (12%)
Query: 91 GVAWQDAG-KVELVEGSSYLGQPLPFSLTTLIWI---EVIVIGYIEYQR--------NAE 138
G W AG ++ +G +YLG P +++ + ++G +E R E
Sbjct: 9 GAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFGRE 68
Query: 139 LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LD LYPGG FDPLGLA+DP L L++ E+K+ RLAMVA L F +Q T GP+
Sbjct: 69 LD---TLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 123
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 89 FARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 148
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 149 LVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVTDPI---YPGGSFDPLGLADDPDTFA 205
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 206 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 237
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 80/151 (52%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
R R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 93 FARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNP 152
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +VI++G +E R LD V LYPGG YFDPLGLA DP
Sbjct: 153 NLVHAQSILAVLGFQVILMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAE 212
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 213 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 243
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 80/149 (53%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +VI++G +E R A D +YPGG FDPLGLA DP L+
Sbjct: 151 LVHAQSILAIWASQVILMGAVEGYRVAGGPLGDVTDPIYPGGSFDPLGLADDPDTFAELK 210
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGP+
Sbjct: 211 VKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 82/150 (54%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPF 115
R RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 92 RNRELEVIHSRWAMLGALGCVFPELLSKNGVQFGEAVWFKAGSQIFSEGGLDYLGNPNLV 151
Query: 116 SLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW +V+++G++E R +LD +LYPGG FDPLGLA DP L
Sbjct: 152 HAQSILAIWACQVVLMGFVEGYRVGGGPLGEDLD---KLYPGGAFDPLGLADDPEAFAEL 208
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ E+K+ RLAM + F +QA TGKGP+
Sbjct: 209 KVKELKNGRLAMFSMFGFFVQAIVTGKGPV 238
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 66 RECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPFSL 117
RE E+IH RWAMLG LG I E L+ W AG EG YLG P
Sbjct: 94 RELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 153
Query: 118 TTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQL 168
++ IW +V+++G IE R LDP LYPGG FDPLGLA DP L++
Sbjct: 154 QSILAIWATQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFAELKV 210
Query: 169 AEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 211 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 242
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 82/153 (53%), Gaps = 21/153 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+++RE ELIH RWAMLG LG + E L W AG +G YLG P
Sbjct: 76 FKKYRETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGGLDYLGSP 135
Query: 113 LPF---SLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKL 163
S+ ++ +VI++G IE Y+ N LDP LYPG FDPLGLA DP
Sbjct: 136 ALIHAQSIGAIVISQVILMGLIEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTF 192
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 193 AELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPV 225
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG +G YLG P
Sbjct: 70 FARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPS 129
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENL 166
++ IW +VI++G +E R A P+ LYPGG FDPLGLA+DP L
Sbjct: 130 LVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAEL 189
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 190 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 223
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 82/153 (53%), Gaps = 21/153 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+++RE ELIH RWAMLG LG + E L W AG +G YLG P
Sbjct: 73 FKKYRETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGGLDYLGSP 132
Query: 113 LPF---SLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKL 163
S+ ++ +VI++G IE Y+ N LDP LYPG FDPLGLA DP
Sbjct: 133 ALIHAQSIGAIVISQVILMGLIEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTF 189
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 190 AELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPV 222
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 83/155 (53%), Gaps = 23/155 (14%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAG-KVELVEGSSYLGQP 112
L R+RE E+IH RWAMLG LG + E L G W AG ++ +G +YLG P
Sbjct: 87 LARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNP 146
Query: 113 LPFSLTTLIWI---EVIVIGYIEYQR--------NAELDPVKRLYPGGYFDPLGLASDPG 161
+++ + ++G +E R ELD LYPGG FDPLGLA+DP
Sbjct: 147 SLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFGRELD---TLYPGGPFDPLGLANDPD 203
Query: 162 KLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L L++ E+K+ RLAMVA L F +Q T GP+
Sbjct: 204 ALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 238
Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG 91
L R+RE E+IH RWAMLG LG + E L G
Sbjct: 322 LARYREAEVIHARWAMLGALGVVTPELLAG 351
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 82/149 (55%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 89 FARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 148
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW ++V+++G++E R + + ++YPGG FDPLGLA DP L+
Sbjct: 149 LVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELK 208
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM + F +QA TGKGPI
Sbjct: 209 VKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 82/149 (55%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 79 FARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 138
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW ++V+++G++E R + + ++YPGG FDPLGLA DP L+
Sbjct: 139 LVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELK 198
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM + F +QA TGKGPI
Sbjct: 199 VKELKNGRLAMFSMFGFFVQAIVTGKGPI 227
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 84/153 (54%), Gaps = 14/153 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 89 FARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 148
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G++E R + + ++YPGG FDPLGLA DP L+
Sbjct: 149 LVHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELK 208
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
+ E+K++RLAM + F +QA TGKGPI +A
Sbjct: 209 VKELKNSRLAMFSMFGFFVQAIVTGKGPIENLA 241
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 80/149 (53%), Gaps = 16/149 (10%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTGV--------AWQDAGKVELVEGS-SYLGQP-- 112
+ R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 95 KNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNL 154
Query: 113 -LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLENLQ 167
S+ ++ +V+++G +E R LD V LYPGG YFDPLGLA DP L+
Sbjct: 155 VHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPATFAELK 214
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGP+
Sbjct: 215 VKEIKNGRLAMFSMFGFFVQAIVTGKGPL 243
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 82/150 (54%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG + E A TGV W AG EG YLG P
Sbjct: 94 KNRELEVIHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 153
Query: 116 SLTTL--IWI-EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW +V+++G IE R LDP LYPGG FDPLGLA DP L
Sbjct: 154 HAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFAEL 210
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 211 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 81/147 (55%), Gaps = 14/147 (9%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPF 115
R RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 93 RNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLV 152
Query: 116 SLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
++ IW +V+++G++E R + + ++YPGG FDPLGLA DP L++
Sbjct: 153 HAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVK 212
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM + F +QA TGKGPI
Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 85/147 (57%), Gaps = 14/147 (9%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAG-KVELVEGSSYLGQPLPF 115
+ RE E+IH RWAMLGT+G I E L GV W AG ++ EG +YLG P
Sbjct: 96 KNRELEVIHARWAMLGTVGCIVPELLERNGVKIGEAVWFKAGSQIFRDEGLNYLGDPKLI 155
Query: 116 SLTTLIWI---EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
++ + +VI++G IE R + +P LYPGG FDPL LA DP + L++
Sbjct: 156 HAQNILAVLAAQVILMGAIEGYRISGGPLGEPTDPLYPGGNFDPLHLADDPEEFAILKVK 215
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM A L F +QA TGKGP+
Sbjct: 216 EIKNGRLAMFAMLGFYVQAIVTGKGPL 242
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG +G YLG P
Sbjct: 91 FARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENL 166
++ IW +VI++G +E R A P+ LYPGG FDPLGLA+DP L
Sbjct: 151 LVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAEL 210
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 211 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 89 FARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 148
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 149 LVHAQSILAIWASQVILMGAVEGYRVAGGPLGEVTDPI---YPGGSFDPLGLADDPDTFA 205
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 206 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 237
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG +G YLG P
Sbjct: 90 FARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENL 166
++ IW +VI++G +E R A P+ LYPGG FDPLGLA+DP L
Sbjct: 150 LVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAEL 209
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG +G YLG P
Sbjct: 91 FARNRELEVIHSRWAMLGALGCVFPELLARNGVEFGEAVWFKAGSQIFSDGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENL 166
++ IW +VI++G +E R A P+ LYPGG FDPLGLA+DP L
Sbjct: 151 LVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAEL 210
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 211 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 82/150 (54%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG + E A TGV W AG EG YLG P
Sbjct: 94 KNRELEVIHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 153
Query: 116 SLTTL--IWI-EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW +V+++G IE R LDP LYPGG FDPLGLA DP L
Sbjct: 154 HAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFAEL 210
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 211 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A +GV W AG EG YLG P
Sbjct: 89 FARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 148
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 149 LVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVTDPI---YPGGSFDPLGLADDPDTFA 205
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 206 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 237
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 82/149 (55%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 45 FARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 104
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW ++V+++G++E R + + ++YPGG FDPLGLA DP L+
Sbjct: 105 LVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELK 164
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM + F +QA TGKGPI
Sbjct: 165 VKELKNGRLAMFSMFGFFVQAIVTGKGPI 193
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+R+RE ELIH RWAMLG LG + E L W AG EG YLG P
Sbjct: 80 FKRYRELELIHARWAMLGALGCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPS 139
Query: 114 ---PFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ + ++VI++G IE Y+ N LDP LYPG FDPLGLA DP
Sbjct: 140 LVHAQNIVATLAVQVILMGLIEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTFA 196
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ LAM + F +QA TGKGP+
Sbjct: 197 ELKVKEIKNGALAMFSMFGFFVQAIVTGKGPV 228
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 83/155 (53%), Gaps = 23/155 (14%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAG-KVELVEGSSYLGQP 112
L R+RE E+IH RWAMLG LG + E L G W AG ++ +G +YLG P
Sbjct: 176 LARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNP 235
Query: 113 LPFSLTTLIWI---EVIVIGYIEYQR--------NAELDPVKRLYPGGYFDPLGLASDPG 161
+++ + ++G +E R ELD LYPGG FDPLGLA+DP
Sbjct: 236 SLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFGRELD---TLYPGGPFDPLGLANDPD 292
Query: 162 KLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L L++ E+K+ RLAMVA L F +Q T GP+
Sbjct: 293 ALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 327
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 83/155 (53%), Gaps = 23/155 (14%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAG-KVELVEGSSYLGQP 112
L R+RE E+IH RWAMLG LG + E L G W AG ++ +G +YLG P
Sbjct: 637 LARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNP 696
Query: 113 LPFSLTTLIWI---EVIVIGYIEYQR--------NAELDPVKRLYPGGYFDPLGLASDPG 161
+++ + ++G +E R ELD LYPGG FDPLGLA+DP
Sbjct: 697 SLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDSGRELD---TLYPGGPFDPLGLANDPD 753
Query: 162 KLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L L++ E+K+ RLAMVA L F +Q T GP+
Sbjct: 754 ALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 788
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 85/155 (54%), Gaps = 23/155 (14%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT---GV-----AWQDAGKVELVE-GSSYLGQP 112
L R+R ++IHGRWAMLG LG E + GV W AG E G +YLGQP
Sbjct: 879 LARYRVAQVIHGRWAMLGVLGCWFPECINRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQP 938
Query: 113 LPFSLTTLIWI---EVIVIGYIEYQRNA--------ELDPVKRLYPGGYFDPLGLASDPG 161
+++ ++++G +E R+A +LDP LYPGG FDPLGLA DP
Sbjct: 939 GLIHAQSVVLTFLSTLVLMGAVEAYRSAGSVGDFGADLDP---LYPGGPFDPLGLADDPE 995
Query: 162 KLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ E+K+ RLAMVA F +Q TGKGP+
Sbjct: 996 AFLELKVKEVKNGRLAMVAIFGFFVQGILTGKGPV 1030
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 78/151 (51%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGV--------AWQDAGKVELVEGS-SYLGQP 112
QR+R+ EL +GRWAMLG LG +A E L+ V W G L GS YL P
Sbjct: 402 FQRYRDAELQNGRWAMLGVLGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANP 461
Query: 113 LPFSLTTLIWIEVIVIGYI---EYQRNAELDPV----KRLYPGGYFDPLGLASDPGKLEN 165
+ L+ V+ + + E R A P+ + YPGG FDPLGL+ DP
Sbjct: 462 KLIHASNLLLTLVLELVFFFAAETWREAGEGPLGKAQDKSYPGGVFDPLGLSKDPAAFAE 521
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ E+K+ RLAM+A L +QA TG+ P+
Sbjct: 522 AKVKEVKNGRLAMLAMLGLFVQAGVTGQSPL 552
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 11/80 (13%)
Query: 125 VIVIGYIEYQRNA--------ELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARL 176
++++G +E R+A +LDP LYPGG FDPLGLA DP L++ E+K+ RL
Sbjct: 14 LVLMGAVEAYRSAGSVGDFGADLDP---LYPGGPFDPLGLADDPEAFLELKVKEVKNGRL 70
Query: 177 AMVAFLIFGIQAAFTGKGPI 196
AMVA F +Q TGKGP+
Sbjct: 71 AMVAIFGFSVQGILTGKGPV 90
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 81/149 (54%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 91 FARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPN 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G++E R + + ++YPGG FDPLGLA DP L+
Sbjct: 151 LVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELK 210
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGPI
Sbjct: 211 VKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 150 LIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+KH RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKELKHGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 82/147 (55%), Gaps = 15/147 (10%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEAL---TGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
+RE EL+H RWAMLGTLG EAL +G+ W AG EG YLG P
Sbjct: 89 YREIELMHARWAMLGTLGCFLPEALEKYSGINFGESVWFKAGGQIFQEGGLDYLGNPSLV 148
Query: 116 ---SLTTLIWIEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
S+ ++I+ +++G +E R + ++YPGG FDPLGL DP L L++
Sbjct: 149 HAQSIIATVFIQALLMGLVEGYRVGGGPLGEAGDKMYPGGSFDPLGLGDDPDTLAELKVK 208
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM + + IQA TGKGP+
Sbjct: 209 EIKNGRLAMFSMFGYFIQAIVTGKGPV 235
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 82/153 (53%), Gaps = 21/153 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+++RE ELIH RWAMLG LG + E L W AG +G YLG P
Sbjct: 23 FKKYRETELIHARWAMLGALGCVTPEILARYGGTSFGESVWFRAGAQIFKDGGLDYLGSP 82
Query: 113 LPF---SLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKL 163
S+ ++ +VI++G IE Y+ N LDP LYPG FDPLGLA DP
Sbjct: 83 ALIHAQSIGAIVISQVILMGLIEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTF 139
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 140 AELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPV 172
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 82/147 (55%), Gaps = 15/147 (10%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEAL---TGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
+RE EL+H RWAMLGTLG EAL +G+ W AG EG YLG P
Sbjct: 89 YREIELMHARWAMLGTLGCFLPEALEKYSGINFGESVWFKAGGQIFQEGGLDYLGNPSLV 148
Query: 116 ---SLTTLIWIEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
S+ ++I+ +++G +E R + ++YPGG FDPLGL DP L L++
Sbjct: 149 HAQSIIATVFIQALLMGLVEGYRVGGGPLGEAGDKMYPGGSFDPLGLGDDPDTLAELKVK 208
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM + + IQA TGKGP+
Sbjct: 209 EIKNGRLAMFSMFGYFIQAIVTGKGPV 235
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 83/149 (55%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GVA-----WQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 91 FARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPN 150
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G++E R + + ++YPGG FDPLGLA DP L+
Sbjct: 151 LIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELK 210
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGPI
Sbjct: 211 VKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 82/150 (54%), Gaps = 15/150 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG +G YLG P
Sbjct: 91 FARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENL 166
++ IW +VI++G +E R A P+ LYPGG FDPLGLA+DP L
Sbjct: 151 LVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAEL 210
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ E+K+ RLAM + F +QA TGKGP+
Sbjct: 211 KVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A +GV W AG EG YLG P
Sbjct: 93 FARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPI---YPGGSFDPLGLADDPDTFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 80/149 (53%), Gaps = 16/149 (10%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP-- 112
R R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 90 RNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNL 149
Query: 113 -LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLENLQ 167
S+ ++ +V+++G +E R LD V LYPGG YFDPLGLA DP L+
Sbjct: 150 VHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELK 209
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F IQA TGKGP+
Sbjct: 210 VKEIKNGRLAMFSMFGFFIQAIVTGKGPL 238
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGESVWFKAGSQIFSEGGLDYLGNPN 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G++E R LDP+ YPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPI---YPGGAFDPLGLADDPDAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 79/153 (51%), Gaps = 21/153 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+R+RE ELIH RWAMLG LG I E L W AG EG YLG P
Sbjct: 83 FKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYLGNPS 142
Query: 114 PFSLTTLIW----IEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKL 163
+ +VI++G +E Y+ N LDP LYPG FDPLGLA DP
Sbjct: 143 LVHAQNIRRHPGRFKVILMGLVEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTF 199
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 200 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 232
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 80/149 (53%), Gaps = 16/149 (10%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTGV--------AWQDAGKVELVEGS-SYLGQP-- 112
+ R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 94 KNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNL 153
Query: 113 -LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLENLQ 167
S+ ++ +VI++G +E R LD V LYPGG YFDPLGLA DP L+
Sbjct: 154 VHAQSILAVLGFQVILMGLVEGYRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELK 213
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGP+
Sbjct: 214 VKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
>gi|145079798|tpg|DAA05935.1| TPA_inf: chloroplast light-harvesting complex protein precursor
Lhcp2.5 [Micromonas sp. CCMP490]
Length = 231
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 95/189 (50%), Gaps = 27/189 (14%)
Query: 28 QNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE 87
+ K D+ G GE +P+ P FG ++ E E+IHGRWAMLG GA A E
Sbjct: 26 STMIKADIYPEFGTYPGGGE---SPIIP----FGSEKNAEREVIHGRWAMLGVTGAWAAE 78
Query: 88 ALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQ 134
TG+ W AG + + + + P ++ L W IEV+++G E
Sbjct: 79 NGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWAVLAIEVVLVGLAEAY 138
Query: 135 RNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 188
R DP V + PGG FDPLGLA + G LE L++ E+KH RL+M A+L +Q
Sbjct: 139 RTGLSDPAFDELTVGDVSPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWLGCIMQG 197
Query: 189 AFTGKGPIS 197
T +GPI+
Sbjct: 198 LATQEGPIA 206
>gi|145079780|tpg|DAA05933.1| TPA_inf: chloroplast light-harvesting complex protein precursor
Lhcp2.4 [Micromonas sp. CCMP490]
Length = 231
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 95/189 (50%), Gaps = 27/189 (14%)
Query: 28 QNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE 87
+ K D+ G GE +P+ P FG ++ E E+IHGRWAMLG GA A E
Sbjct: 26 STMIKADIYPEFGTYPGGGE---SPIIP----FGSEKNAEREVIHGRWAMLGVTGAWAAE 78
Query: 88 ALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQ 134
TG+ W AG + + + + P ++ L W IEV+++G E
Sbjct: 79 NGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWAVLAIEVVLVGLAEAY 138
Query: 135 RNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 188
R DP V + PGG FDPLGLA + G LE L++ E+KH RL+M A+L +Q
Sbjct: 139 RTGLSDPAFDELTVGDVSPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWLGCIMQG 197
Query: 189 AFTGKGPIS 197
T +GPI+
Sbjct: 198 LATQEGPIA 206
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A +GV W AG EG YLG P
Sbjct: 93 FARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPI---YPGGSFDPLGLADDPDTFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A +GV W AG EG YLG P
Sbjct: 94 FARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 153
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 154 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPI---YPGGSFDPLGLADDPDTFA 210
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
>gi|303271155|ref|XP_003054939.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|303272221|ref|XP_003055472.1| prasinophyte specific chlorophyll a/b-binding protein [Micromonas
pusilla CCMP1545]
gi|303277051|ref|XP_003057819.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|303277801|ref|XP_003058194.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226460476|gb|EEH57770.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226460851|gb|EEH58145.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226462913|gb|EEH60191.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226463446|gb|EEH60724.1| prasinophyte specific chlorophyll a/b-binding protein [Micromonas
pusilla CCMP1545]
Length = 231
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 95/189 (50%), Gaps = 27/189 (14%)
Query: 28 QNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE 87
+ K D+ G GE +P+ P FG ++ E E+IHGRWAMLG GA A E
Sbjct: 26 STVVKADIYPEFGTYPGGGE---SPIIP----FGSEKNAEREVIHGRWAMLGVTGAWAAE 78
Query: 88 ALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQ 134
TG+ W AG + + + + P ++ L W IEV+++G E
Sbjct: 79 NGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWNVLIIEVVLVGLAEAY 138
Query: 135 RNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 188
R DP V + PGG FDPLGLA + G LE L++ E+KH RL+M A+L +Q
Sbjct: 139 RTGLSDPVFDELTVGDVSPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWLGCIMQG 197
Query: 189 AFTGKGPIS 197
T +GPI+
Sbjct: 198 LATQEGPIA 206
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A +GV W AG EG YLG P
Sbjct: 93 FARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPI---YPGGSFDPLGLADDPDTFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 80/151 (52%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGV--------AWQDAGKVELVEGS-SYLGQP 112
+ R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 91 FAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 150
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +VI++G +E R LD V LYPGG YFDPLGLA DP
Sbjct: 151 NLVHAQSILAVLGFQVILMGLVEGYRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAE 210
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A +GV W AG EG YLG P
Sbjct: 93 FARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPI---YPGGSFDPLGLADDPDTFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 82/150 (54%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG + E A TGV W AG EG YLG P
Sbjct: 94 KNRELEVIHCRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 153
Query: 116 SLTTL--IWI-EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW +V+++G IE R LDP LYPGG FDPLGLA DP L
Sbjct: 154 HAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPESFAEL 210
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 211 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 82/150 (54%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG + E L GV W AG EG YLG P
Sbjct: 93 KNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLI 152
Query: 116 SLTTL--IWI-EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW +V+++G++E R LDP+ YPGG FDPLGLA DP L
Sbjct: 153 HAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDPI---YPGGAFDPLGLADDPDAFAEL 209
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIITGKGPI 239
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 83/149 (55%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GVA-----WQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 63 FARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPN 122
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G++E R + + ++YPGG FDPLGLA DP L+
Sbjct: 123 LIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELK 182
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGPI
Sbjct: 183 VKEIKNGRLAMFSMFGFFVQAIVTGKGPI 211
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 82/150 (54%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG + E A TGV W AG EG YLG P
Sbjct: 94 KNRELEVIHCRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 153
Query: 116 SLTTL--IWI-EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW +V+++G IE R LDP LYPGG FDPLGLA DP L
Sbjct: 154 HAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFAEL 210
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 211 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE ELIH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELELIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW ++V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGAFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKKGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 82/150 (54%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG + E A TGV W AG EG YLG P
Sbjct: 94 KNRELEVIHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 153
Query: 116 SLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW +V+++G IE R LDP LYPGG FDPLGLA DP L
Sbjct: 154 HAQSILAIWAFQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFAEL 210
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 211 KVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 104 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQ 163
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G IE R A DP+ YPGG FDPLGLA DP
Sbjct: 164 LIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGLADDPDAFA 220
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 221 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 256
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 82/150 (54%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG + E A TGV W AG EG YLG P
Sbjct: 94 KNRELEVIHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 153
Query: 116 SLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW +V+++G IE R LDP LYPGG FDPLGLA DP L
Sbjct: 154 HAQSILAIWAFQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFAEL 210
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 211 KVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 86/157 (54%), Gaps = 21/157 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+++RE E+IH RWA+LG LG + E L+ A W AG EG YLG P
Sbjct: 81 FKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSP 140
Query: 113 LPF---SLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKL 163
++ + ++V+++G IE Y+ N LDP LYPG FDPLGLA DP
Sbjct: 141 ALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTF 197
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 198 AELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLA 234
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 82/147 (55%), Gaps = 14/147 (9%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
+ RE ELIH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 94 KNRELELIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLV 153
Query: 116 SLTTL--IW-IEVIVIGYIEYQRNA--ELDPVKR-LYPGGYFDPLGLASDPGKLENLQLA 169
++ IW +V+++G +E R A L V+ LYPGG FDPLGLA DP L++
Sbjct: 154 HAQSILAIWAFQVVLMGAVEGYRVAGGPLGEVEDPLYPGGSFDPLGLADDPEAFAELKVK 213
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
E+K+ RLAM + F +QA TGKGPI
Sbjct: 214 ELKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 81/145 (55%), Gaps = 14/145 (9%)
Query: 66 RECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPFSL 117
RE E+IHGRWAMLG LG + E L GV W AG EG YLG P
Sbjct: 94 RELEVIHGRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 153
Query: 118 TTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
++ IW +V+++G++E R + + +YPGG FDPLGLA DP L++ EI
Sbjct: 154 QSILAIWACQVVLMGFVEGYRVGGGPLGEGLDAIYPGGAFDPLGLADDPDAFAELKVKEI 213
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPI 196
K+ RLAM + F +QA TGKGPI
Sbjct: 214 KNGRLAMFSMFGFFVQAIVTGKGPI 238
>gi|303283632|ref|XP_003061107.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226457458|gb|EEH54757.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 232
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 95/189 (50%), Gaps = 27/189 (14%)
Query: 28 QNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE 87
+ K D+ G GE +P+ P FG ++ E E+IHGRWAMLG GA A E
Sbjct: 27 STVVKADIYPEFGTYPGGGE---SPIIP----FGSEKNAEREVIHGRWAMLGVTGAWAAE 79
Query: 88 ALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQ 134
TG+ W AG + + + + P ++ L W IEV+++G E
Sbjct: 80 NGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWAVLAIEVVLVGLAEAY 139
Query: 135 RNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 188
R DP V + PGG FDPLGLA + G LE L++ E+KH RL+M A+L +Q
Sbjct: 140 RTGLSDPVFDELTVGDVSPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWLGCIMQG 198
Query: 189 AFTGKGPIS 197
T +GPI+
Sbjct: 199 LATQEGPIA 207
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG + EG YLG P
Sbjct: 88 FARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSLIFSEGGLDYLGNPS 147
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 148 LIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 204
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 205 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 240
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG E L GV W AG EG YLG P
Sbjct: 91 FARNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G++E R LDP LYPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPDAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ E+K+ RLAM + F +QA TGKGP+
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPV 239
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 87 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 146
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW ++V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 147 LIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 203
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 204 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 239
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 91/174 (52%), Gaps = 27/174 (15%)
Query: 44 DSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQD 96
D+ EL P E F + RE E+IH RWAMLG LG + E A GV W
Sbjct: 82 DTAELSADP-----ETFA--KNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 134
Query: 97 AGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLY 146
AG EG YLG P ++ IW +V+++G +E R A +DP LY
Sbjct: 135 AGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LY 191
Query: 147 PGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
PGG FDPLGLA DP L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 192 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A +GV W AG EG YLG P
Sbjct: 91 FARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 151 LVHAQSILAIWASQVVLMGAVEGYRVAGGPLGEITDPI---YPGGSFDPLGLADDPDTFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 104 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQ 163
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G IE R A DP+ YPGG FDPLGLA DP
Sbjct: 164 LIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGLADDPDAFA 220
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 221 DVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 256
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW ++V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGAFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 59 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQ 118
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G IE R A DP+ YPGG FDPLGLA DP
Sbjct: 119 LIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGLADDPDAFA 175
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 176 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 211
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 82/150 (54%), Gaps = 15/150 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--------GVAWQDAGKVELVEGSSYLGQPL 113
++RE E+IH RWAMLG LG + E L V W+ ++ G YLG P
Sbjct: 61 FAKYREIEVIHARWAMLGALGCLTPELLAKNGVSFGEAVWWKAGAQIFAPGGLDYLGNPS 120
Query: 114 PFSLTTLIWI---EVIVIGYIEYQR---NAELDPVKRLYPGG-YFDPLGLASDPGKLENL 166
++I I +V+++G IE R + + ++YPGG YFDPLGLA DP L
Sbjct: 121 LVHAQSIIAILASQVLLMGAIEGYRVYGGPGGEGLDKVYPGGDYFDPLGLADDPDTFAEL 180
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 181 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 210
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 82/151 (54%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL---TGV-----AWQDAGKVELVEGS-SYLGQP 112
R R E+IHGRWAMLG LG + E L GV W AG EG YLG P
Sbjct: 92 FARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNP 151
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +V+++G +E R LD V LYPGG YFDPLGLA DP
Sbjct: 152 NLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAE 211
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 84/153 (54%), Gaps = 20/153 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+R+RE ELIH RWAMLG LG I E A GV W AG EG +YLG
Sbjct: 81 FRRYRELELIHARWAMLGALGCITPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNSS 140
Query: 114 PF---SLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
S+ + +VI++G +E Y+ N LDP LYPG FDPLGLA DP
Sbjct: 141 LIHAQSILATLACQVILMGLVEGYRVNGGPAGEGLDP---LYPGEAFDPLGLADDPDTFA 197
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
L++ EIK+ RLAM + F +QA TG+GPI+
Sbjct: 198 ELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIA 230
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 83/152 (54%), Gaps = 15/152 (9%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
R RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 94 RNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLV 153
Query: 116 SLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENLQL 168
++ IW +VI++G +E R P+ LYPGG FDPLGLA+DP L++
Sbjct: 154 HAQSILAIWATQVILMGAVEGYRVPGDGPLGEAEDLLYPGGSFDPLGLATDPVAFAELKV 213
Query: 169 AEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G IE R A +DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVILMGAIEGYRVAGGPLGEVIDP---LYPGGSFDPLGLAEDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 90 FARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP LYPGG FDPLGLA DP
Sbjct: 150 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G++E R LDP+ YPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPI---YPGGAFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 80/149 (53%), Gaps = 16/149 (10%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTGV--------AWQDAGKVELVEGS-SYLGQP-- 112
+ R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 90 KNRALEVIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGSQIFTEGGLDYLGNPNL 149
Query: 113 -LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLENLQ 167
S+ ++ +V+++G +E R LD V LYPGG YFDPLGLA DP L+
Sbjct: 150 VHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELK 209
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGP+
Sbjct: 210 VKEIKNGRLAMFSMFGFFVQAIVTGKGPL 238
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 80/153 (52%), Gaps = 21/153 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+ +RE ELIH RWAMLG LG + E L A W AG EG YLG P
Sbjct: 55 FKAYREQELIHARWAMLGALGCVTPEILAKYAGVSCGESVWFKAGSQIFQEGGLDYLGNP 114
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKL 163
S+ ++ +V+++G IE R LDP L+PG FDPLGLA DP
Sbjct: 115 SLVHAQSILAILGCQVVLMGLIEAYRVNGGPLGEGLDP---LHPGDKFDPLGLADDPDTF 171
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 172 AELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPI 204
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 80/152 (52%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG E L+ W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPN 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW ++V+++G+IE R LDP LYPGG FDPL LA DP
Sbjct: 151 LIHAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDP---LYPGGAFDPLNLAEDPEAFS 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 80/150 (53%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG E L+ W AG EG YLG P
Sbjct: 93 KNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLI 152
Query: 116 SLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW ++V+++G+IE R LDP LYPGG FDPL LA DP L
Sbjct: 153 HAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDP---LYPGGAFDPLNLAEDPEAFSEL 209
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 80/152 (52%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG E L+ W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPN 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW ++V+++G+IE R LDP LYPGG FDPL LA DP
Sbjct: 151 LIHAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDP---LYPGGAFDPLNLAEDPEAFS 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 84/153 (54%), Gaps = 20/153 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+R+RE ELIH RWAMLG LG I E A GV W AG EG +YLG
Sbjct: 82 FRRYRELELIHARWAMLGALGCITPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNSS 141
Query: 114 PF---SLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
S+ + +VI++G +E Y+ N LDP LYPG FDPLGLA DP
Sbjct: 142 LIHAQSILATLACQVILMGLVEGYRVNGGPAGEGLDP---LYPGEAFDPLGLADDPDTFA 198
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
L++ EIK+ RLAM + F +QA TG+GPI+
Sbjct: 199 ELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIA 231
>gi|255071911|ref|XP_002499630.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas sp. RCC299]
gi|255071913|ref|XP_002499631.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas sp. RCC299]
gi|255072873|ref|XP_002500111.1| prasinophyte specific chlorophyll a/b-binding protein [Micromonas
sp. RCC299]
gi|255080166|ref|XP_002503663.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas sp. RCC299]
gi|226514892|gb|ACO60888.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas sp. RCC299]
gi|226514893|gb|ACO60889.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas sp. RCC299]
gi|226515373|gb|ACO61369.1| prasinophyte specific chlorophyll a/b-binding protein [Micromonas
sp. RCC299]
gi|226518930|gb|ACO64921.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas sp. RCC299]
Length = 231
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 95/189 (50%), Gaps = 27/189 (14%)
Query: 28 QNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE 87
+ K D+ G GE +P+ P FG ++ E E+IHGRWAMLG GA A E
Sbjct: 26 SKVIKADIYPEFGTYPGGGE---SPIIP----FGSEKNAEREVIHGRWAMLGVTGAWAAE 78
Query: 88 ALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQ 134
TG+ W AG + + + + P ++ L W IEV+++G E
Sbjct: 79 NGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWAVLAIEVVLVGLAEAY 138
Query: 135 RNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 188
R DP V + PGG FDPLGLA + G LE L++ E+KH RL+M A+L +Q
Sbjct: 139 RTGLSDPVFDELTVGDVSPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWLGCIMQG 197
Query: 189 AFTGKGPIS 197
T +GPI+
Sbjct: 198 LATQEGPIA 206
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 86/156 (55%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG++ E L+ GV W AG EG YLG P
Sbjct: 58 FSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 117
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 118 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 174
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 175 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 210
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW ++VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLKNLA 243
>gi|147860827|emb|CAN83151.1| hypothetical protein VITISV_031291 [Vitis vinifera]
Length = 244
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 80/153 (52%), Gaps = 16/153 (10%)
Query: 60 FGLQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLG 110
F R R E+IHGRWAMLG LG I E L W AG EG YLG
Sbjct: 66 FAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLG 125
Query: 111 QP---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKL 163
P S+ ++ +V+++G +E R L V LYPGG YFDPLGLA DP
Sbjct: 126 NPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGDGNNLYPGGQYFDPLGLADDPVTF 185
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 186 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 218
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 80/150 (53%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG E L+ W AG EG YLG P
Sbjct: 93 KNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLI 152
Query: 116 SLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW ++V+++G+IE R LDP LYPGG FDPL LA DP L
Sbjct: 153 HAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDP---LYPGGAFDPLNLAEDPEAFSEL 209
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|145079885|tpg|DAA05947.1| TPA_inf: chloroplast light-harvesting complex protein precursor
Lhcp2.1 [Micromonas sp. CCMP490]
Length = 231
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 94/189 (49%), Gaps = 27/189 (14%)
Query: 28 QNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE 87
+ K D+ G GE +P+ P FG ++ E E+IHGRWAMLG GA A E
Sbjct: 26 STMIKADIYPEFGTYPGGGE---SPIIP----FGSEKNAEREVIHGRWAMLGVTGAWAAE 78
Query: 88 ALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQ 134
TG+ W AG + + + + P ++ L W IEV+++G E
Sbjct: 79 NGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWAVLAIEVVLVGLAEAY 138
Query: 135 RNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 188
R DP V + PGG FDPLGLA + G LE L++ E+KH RL+M A+L Q
Sbjct: 139 RTGLTDPAFDELTVGDVSPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWLGCISQG 197
Query: 189 AFTGKGPIS 197
T +GPI+
Sbjct: 198 LATQEGPIA 206
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE ++IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FARNRELQVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENL 166
++ IW +VI++G +E R A P+ LYPGG FDPLGLA+DP L
Sbjct: 152 LVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAEL 211
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++ EIK+ RLAM + F QA TGKGP+ +A
Sbjct: 212 KVKEIKNGRLAMFSMFGFFAQAIVTGKGPLENLA 245
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 100 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 159
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 160 LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPDAFA 216
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 217 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 252
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 81/149 (54%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 89 FARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 148
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G++E R + + ++YPGG FDPLGLA DP L+
Sbjct: 149 LVHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELK 208
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM + F +QA TGKGPI
Sbjct: 209 VKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 80/150 (53%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG E L+ W AG EG YLG P
Sbjct: 93 KNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLI 152
Query: 116 SLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW ++V+++G+IE R LDP LYPGG FDPL LA DP L
Sbjct: 153 HAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDP---LYPGGAFDPLNLAEDPEAFSEL 209
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 150 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 207 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 242
>gi|157987283|gb|ABW07803.1| chlorophyll A-B binding protein [Solenostemon scutellarioides]
Length = 170
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 85/152 (55%), Gaps = 14/152 (9%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPF 115
R RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 16 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLI 75
Query: 116 SLTTL--IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
++ IW +V+++G IE R + + ++YPGG FDPLGLA DP L++
Sbjct: 76 HAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDKVYPGGSFDPLGLADDPEAFAELKVK 135
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
E+K+ RLAM + F +QA TGKGPI ++T
Sbjct: 136 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLST 167
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 92 FSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 80/152 (52%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG E L GV W AG EG YLG P
Sbjct: 91 FARNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW V+++G++E R LDP LYPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWATRVVLMGFVEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPDAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ E+K+ RLAM + F +QA TGKGP+
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPV 239
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L V W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEVVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 100 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 159
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 160 LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPDAFA 216
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 217 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 252
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 94 FSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 153
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 154 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 210
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 211 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 246
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 81/150 (54%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 74 KNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 133
Query: 116 SLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW +V+++G IE R LDP LYPGG FDPLGLA DP L
Sbjct: 134 HAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFAEL 190
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 191 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 220
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 80/147 (54%), Gaps = 14/147 (9%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPF 115
R RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 92 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLI 151
Query: 116 SLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
++ IW +V+++G IE R + + ++YPGG FDPLGLA DP L++
Sbjct: 152 HAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPDAFAELKVK 211
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
E+K+ RLAM + F +QA TGKGPI
Sbjct: 212 ELKNGRLAMFSMFGFFVQAIVTGKGPI 238
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 92 FSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 95 FSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 154
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 155 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 211
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 212 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 247
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 102 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 161
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 162 LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPDAFA 218
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 219 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 254
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 96 FARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 155
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 156 LIHAQSILAIWASQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPDAFA 212
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGPI +A
Sbjct: 213 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 248
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 80/147 (54%), Gaps = 14/147 (9%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPF 115
R RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 93 RNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLV 152
Query: 116 SLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
++ IW +V+++G IE R + + ++YPGG FDPLGLA DP L++
Sbjct: 153 HAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVK 212
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM + F +QA TGKGPI
Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 61 FAKNRELEVIHARWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 120
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 121 LVHAQSILAIWATQVILMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 177
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 178 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 213
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE ELIH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FAKNRELELIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 89 FAKNRELEVIHSRWAMLGGLGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 148
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW ++V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 149 LIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGAFDPLGLADDPEAFA 205
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 206 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 241
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 83/153 (54%), Gaps = 21/153 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL--TGVA------WQDAGKVELVEGS-SYLGQP 112
R+RE E+IH RWAMLG LG + E L G A W AG +G YLG
Sbjct: 70 FSRYRELEVIHARWAMLGALGCVTPELLQKNGAANFGEAVWFKAGAQIFQDGGLDYLGNA 129
Query: 113 ---LPFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKL 163
S+ ++ +++++G IE Y+ N DP+ YPG FDPLGLA DP L
Sbjct: 130 NLVHAQSIVAVLLTQIVLMGLIEGYRVNGGPAGEITDPI---YPGEAFDPLGLADDPDTL 186
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAMV+ F IQA TGKGPI
Sbjct: 187 AELKVKEIKNGRLAMVSMFGFFIQAIVTGKGPI 219
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWATQVILMGAVEGYRVAGGPLGEITDP---LYPGGSFDPLGLAEDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGPI +A
Sbjct: 210 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 245
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG++ E A GV W AG EG YLG P
Sbjct: 90 FARNRELEVIHSRWAMLGALGSVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 150 LIHAQSILAIWASQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 63 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 122
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW ++VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 123 LVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 179
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 180 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 215
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 88 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 147
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW ++V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 148 LIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 204
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 205 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 240
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 84/154 (54%), Gaps = 16/154 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 97 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 156
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENL 166
++ IW +VI++G +E R A P++ +YPGG FDPLGLA DP L
Sbjct: 157 LVHAQSILAIWACQVILMGAVEGYRIAG-GPLREVTDPIYPGGSFDPLGLADDPDAFAEL 215
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 216 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 249
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHARWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWATQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 81/147 (55%), Gaps = 15/147 (10%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEAL---TGV-----AWQDAGKVELVEGS-SYLGQPL-- 113
+RE E+IH RWAMLGTLG + E L +GV W AG EG YLG P
Sbjct: 174 YRETEVIHARWAMLGTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLV 233
Query: 114 -PFSLTTLIWIEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
S+ ++ +VI++G E R + + + PGG FDPLGLA DP L++
Sbjct: 234 HAQSILAILACQVILMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVK 293
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM + L F +QA TGKGP+
Sbjct: 294 EIKNGRLAMFSMLGFYVQAISTGKGPV 320
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 82/149 (55%), Gaps = 16/149 (10%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALT---GV-----AWQDAGKVELVEGS-SYLGQPLP 114
R R ELIHGRWAMLG LG + E L+ GV W AG +G YLG P
Sbjct: 89 RNRALELIHGRWAMLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNL 148
Query: 115 FSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR---LYPGG-YFDPLGLASDPGKLENLQ 167
++ IW +VI++G +E R L V LYPGG YFDPLG A DP L L+
Sbjct: 149 VHAQSILAIWACQVILMGLVEGYRINGLPDVGEGGDLYPGGQYFDPLGFADDPETLAELK 208
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGP+
Sbjct: 209 VKEIKNGRLAMFSMFGFFVQAIVTGKGPL 237
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 94 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 153
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 154 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPDAFA 210
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 246
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 58 FSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 117
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 118 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 174
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 175 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 210
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 81/145 (55%), Gaps = 14/145 (9%)
Query: 66 RECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPFSL 117
RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 93 RELEVIHSRWAMLGALGCVFPEILSKNGIKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 152
Query: 118 TTL--IW-IEVIVIGYIEYQR--NAELDP-VKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
++ IW ++V+++G+IE R LD + +YPGG FDPLGLA DP L++ E+
Sbjct: 153 QSILAIWAVQVVLMGFIEGYRVGGGPLDEGLDIIYPGGAFDPLGLADDPDTAAELKVKEL 212
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPI 196
K+ RLAM + F +QA TGKGP+
Sbjct: 213 KNGRLAMFSMFGFFVQAIVTGKGPV 237
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 63 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 122
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW ++VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 123 LVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 179
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 180 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 215
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 65 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 124
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW ++VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 125 LVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 181
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 182 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 217
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 82/149 (55%), Gaps = 16/149 (10%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALT---GV-----AWQDAGKVELVEGS-SYLGQPLP 114
R R ELIHGRWAMLG LG + E L+ GV W AG +G YLG P
Sbjct: 89 RNRALELIHGRWAMLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNL 148
Query: 115 FSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR---LYPGG-YFDPLGLASDPGKLENLQ 167
++ IW +VI++G +E R L V LYPGG YFDPLG A DP L L+
Sbjct: 149 VHAQSILAIWACQVILMGLVEGYRINGLPDVGEGGDLYPGGQYFDPLGFADDPETLAELK 208
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGP+
Sbjct: 209 VKEIKNGRLAMFSMFGFFVQAIVTGKGPL 237
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 79/152 (51%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+R+RE ELIH RWAMLG LG E L W AG EG YLG P
Sbjct: 79 FKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPS 138
Query: 114 PFSLTTLIW---IEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ ++VI++G IE Y+ N LDP LYPG FDPLGLA DP
Sbjct: 139 LVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDP---LYPGESFDPLGLADDPDTFA 195
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLA + F +QA TGKGP+
Sbjct: 196 ELKVKEIKNGRLASFSMFGFFVQAIVTGKGPV 227
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 83/152 (54%), Gaps = 20/152 (13%)
Query: 66 RECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPFSL 117
RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 90 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 149
Query: 118 TTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQL 168
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP L++
Sbjct: 150 QSILAIWACQVVLMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLAEDPEAFAELKV 206
Query: 169 AEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 238
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG+I E A GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHCRWAMLGALGSIFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEIVDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGESVWFKAGAQIFSEGGLDYLGNPN 150
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G++E R LDP+ YPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDPI---YPGGAFDPLGLADDPDAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ E+K+ RLAM + F +QA TGKGP+
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPV 239
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 65 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 124
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW ++VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 125 LVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 181
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 182 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 217
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 79/151 (52%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+ R E+IHGRWAMLG G I E L W AG EG YLG P
Sbjct: 89 FAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP 148
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +VI++G +E R LD V LYPGG YFDPLGLA DP
Sbjct: 149 NLVHAQSILAVLGFQVILMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAE 208
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 102 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 161
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 162 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPDAFA 218
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 219 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 254
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 97 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 156
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 157 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPDAFA 213
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 214 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 249
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 79/151 (52%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+ R E+IHGRWAMLG G I E L W AG EG YLG P
Sbjct: 89 FAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRVEFKEPVWFKAGSQIFSEGGLDYLGNP 148
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +VI++G +E R LD V LYPGG YFDPLGLA DP
Sbjct: 149 NLVHAQSILAVLGFQVILMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAE 208
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
>gi|255078326|ref|XP_002502743.1| prasinophyte specific chlorophyll a/b-binding protein [Micromonas
sp. RCC299]
gi|255079024|ref|XP_002503092.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas sp. RCC299]
gi|255080886|ref|XP_002504009.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precuror [Micromonas sp. RCC299]
gi|226518009|gb|ACO64001.1| prasinophyte specific chlorophyll a/b-binding protein [Micromonas
sp. RCC299]
gi|226518358|gb|ACO64350.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas sp. RCC299]
gi|226519276|gb|ACO65267.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precuror [Micromonas sp. RCC299]
Length = 231
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 94/189 (49%), Gaps = 27/189 (14%)
Query: 28 QNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE 87
+ K D+ G GE +P+ P FG ++ E E+IHGRWAMLG GA A E
Sbjct: 26 SKVIKADIYPEFGTYPGGGE---SPIIP----FGSEKNAEREVIHGRWAMLGVTGAWAAE 78
Query: 88 ALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQ 134
TG+ W AG + + + + P ++ L W IEV+++G E
Sbjct: 79 NGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWAVLAIEVVLVGLAEAY 138
Query: 135 RNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 188
R DP V + PGG FDPLGLA + G LE L++ E+KH RL+M A+L Q
Sbjct: 139 RTGLSDPVFDELTVGDVSPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWLGCIFQG 197
Query: 189 AFTGKGPIS 197
T +GPI+
Sbjct: 198 LATQEGPIA 206
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FTKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G IE R A DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDP---LYPGGSFDPLGLAEDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 65 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 124
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW ++VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 125 LVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 181
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 182 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 217
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 58 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 117
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 118 LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 174
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 175 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 210
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 79/151 (52%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+ R E+IHGRWAMLG G I E L W AG EG YLG P
Sbjct: 89 FAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP 148
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +VI++G +E R LD V LYPGG YFDPLGLA DP
Sbjct: 149 NLVHAQSILAVLGFQVILMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAE 208
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP +
Sbjct: 150 LVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLAEDPERSA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 81/149 (54%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 89 FARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 148
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW ++V+++G++E R + + ++YP G FDPLGLA DP L+
Sbjct: 149 LVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPSGAFDPLGLADDPDTFAELK 208
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM + F +QA TGKGPI
Sbjct: 209 VKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 97 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 156
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 157 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPDAFA 213
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 214 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 249
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 81/147 (55%), Gaps = 15/147 (10%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEAL---TGV-----AWQDAGKVELVEGS-SYLGQPL-- 113
+RE E+IH RWAMLGTLG + E L +GV W AG EG YLG P
Sbjct: 173 YRETEVIHARWAMLGTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLV 232
Query: 114 -PFSLTTLIWIEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
S+ ++ +VI++G E R + + + PGG FDPLGLA DP L++
Sbjct: 233 HAQSILAILACQVILMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVK 292
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM + L F +QA TGKGP+
Sbjct: 293 EIKNGRLAMFSMLGFYVQAISTGKGPV 319
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 80/147 (54%), Gaps = 20/147 (13%)
Query: 67 ECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPFSLT 118
E E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 96 ELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQ 155
Query: 119 TL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
++ IW ++V+++G++E R LDP LYPGG FDPLGLA DP L++
Sbjct: 156 SILAIWAVQVVLMGFVEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFAELKVK 212
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
E+K+ RLAM + F +QA TGKGP+
Sbjct: 213 ELKNGRLAMTSMFGFFVQAIVTGKGPV 239
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 83/153 (54%), Gaps = 14/153 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G +E R A + V LYPGG FDPLGLA DP L+
Sbjct: 152 LVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELK 211
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
+ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 212 VKEIKNGRLAMFSMFGFFVQALVTGKGPLENLA 244
>gi|115791|sp|P09755.1|CB22_SOYBN RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18548|emb|CAA31418.1| chlorophyll a/b binding preprotein (AA -33 to 223) [Glycine max]
Length = 256
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 89/173 (51%), Gaps = 24/173 (13%)
Query: 45 SGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDA 97
+GE P T + RE E+IH RWAMLG LG + E A GV W A
Sbjct: 69 TGEFHGLSADPET----FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKA 124
Query: 98 GKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYP 147
G EG YLG P ++ IW +VI++G +E R A DP+ YP
Sbjct: 125 GSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YP 181
Query: 148 GGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
GG FDPLGLA DP L L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 182 GGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 234
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 97 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 156
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 157 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPDAFA 213
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 214 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 249
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLAEDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE ELIH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 59 FAKNRELELIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 118
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 119 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLADDPEAFA 175
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 176 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 211
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex II, partial [Chlorella
pyrenoidosa]
Length = 179
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 80/151 (52%), Gaps = 17/151 (11%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPF 115
R+RE E+IH RWAMLG LG I E L W AG +G +YLG
Sbjct: 12 RYREIEVIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGAQIFQDGGLNYLGNESLV 71
Query: 116 ---SLTTLIWIEVIVIGYIEYQRNAELDP------VKRLYPGGYFDPLGLASDPGKLENL 166
S+ + ++V+++G E R P + LYPGG FDPLGLA DP L L
Sbjct: 72 HAQSILATLAVQVLLMGAAESYRANGGAPGGFGEDLDSLYPGGAFDPLGLADDPDTLAEL 131
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
++ EIK+ RLAM + F +QA TG+GPI+
Sbjct: 132 KVKEIKNGRLAMFSMFGFFVQAIVTGQGPIA 162
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 97/227 (42%), Gaps = 73/227 (32%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD G+DPLGLGK TE +
Sbjct: 76 LAGDYGYDPLGLGKDTETVA---------------------------------------- 95
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEAL-------TGVAWQDAGKVELVEGS-SYLGQP 112
++RE EL+H RWAML G + E L G W + G L G+ +Y P
Sbjct: 96 ---KYREYELLHARWAMLAAAGILIPEGLQANGANIKGGVWFETGAEMLNGGTLNYFAVP 152
Query: 113 L-----PFSLTTLIWIEVIVIGYIEYQRNAELDP-----------------VKRLYPGGY 150
P L +I IEV ++G +E+ R P + +YPGG
Sbjct: 153 WGIVSNPLPLFAVIAIEVGLMGAVEFYRRNGTGPAGYSPGIGKFDSSVFEGLDSIYPGGP 212
Query: 151 FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
FDPLGLA DP + L++ EIK+ RLAMV+ L F IQ+ TG+GP +
Sbjct: 213 FDPLGLADDPEVFQELKVKEIKNGRLAMVSVLAFAIQSYVTGEGPYT 259
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 97 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 156
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 157 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPDAFA 213
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 214 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 249
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 80/149 (53%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 91 FARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPN 150
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ +W +V+++G IE R + + ++YPGG FDPLGLA DP L+
Sbjct: 151 LIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELK 210
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGPI
Sbjct: 211 VKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 150 LIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVENLA 242
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 97 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 156
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 157 LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPDAFA 213
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 214 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 249
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 82/149 (55%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E L GV W AG EG YLG P
Sbjct: 86 FARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 145
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G++E R + + ++YPGG FDPLGLA DP L+
Sbjct: 146 LVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTAAELK 205
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM + F +QA TGKGPI
Sbjct: 206 VKELKNGRLAMFSMFGFFVQAIVTGKGPI 234
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 82/149 (55%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNA--ELDPVKR-LYPGGYFDPLGLASDPGKLENLQ 167
++ IW +VI++G +E R A L V+ +YPGG FDPLGLA DP L+
Sbjct: 151 LVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELK 210
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM + F +QA TGKGPI
Sbjct: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 97 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 156
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 157 LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPDAFA 213
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 214 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 249
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 101 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 160
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 161 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPI---YPGGSFDPLGLADDPDAFA 217
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGPI +A
Sbjct: 218 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 253
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 102 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 161
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 162 LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPDAFA 218
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 219 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 254
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 82/149 (55%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E L GV W AG EG YLG P
Sbjct: 86 FARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 145
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G++E R + + ++YPGG FDPLGLA DP L+
Sbjct: 146 LVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTAAELK 205
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM + F +QA TGKGPI
Sbjct: 206 VKELKNGRLAMFSMFGFFVQAIVTGKGPI 234
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVIDP---LYPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 80/152 (52%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G++E R LDP LYPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWATQVVLMGFVEGYRIGGGPLGEGLDP---LYPGGAFDPLGLADDPDAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA GKGPI
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVPGKGPI 239
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G IE R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 97 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 156
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 157 LVHAQSILAIWACQVILMGAVEGYRIAGGPLGXVTDPI---YPGGSFDPLGLADDPDAFA 213
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 214 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 249
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 100 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 159
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 160 LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLAEDPEAFA 216
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 217 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 252
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP LYPGG FDPLGLA DP
Sbjct: 150 LIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGPI +A
Sbjct: 207 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 242
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 21 FAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 80
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G IE R LDP LYPGG FDPLGLA DP
Sbjct: 81 LIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFA 137
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 138 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 169
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 89 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 148
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 149 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLADDPEAFA 205
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 206 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 241
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 81 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 140
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 141 LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPDAFA 197
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 198 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 233
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 81/149 (54%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 89 FAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPN 148
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G+IE R + + ++YPGG FDPLGLA DP L+
Sbjct: 149 LVHAQSILAIWACQVVLMGFIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPDTAAELK 208
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM + F +QA TGKGP+
Sbjct: 209 VKELKNGRLAMFSMFGFFVQAIVTGKGPV 237
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 97 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 156
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 157 LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPDAFA 213
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 214 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 249
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 113 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 172
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 173 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLADDPEAFA 229
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 230 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 265
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 80/149 (53%), Gaps = 16/149 (10%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP-- 112
R R E+IHGRWAMLG LG I E L W AG +G YLG P
Sbjct: 87 RNRALEVIHGRWAMLGALGCITPEVLQKWVNVNFKEPVWFKAGAQIFSQGGLDYLGNPNL 146
Query: 113 -LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLENLQ 167
S+ ++ +V+++G +E R LD V LYPGG YFDPLGLA DP L+
Sbjct: 147 VHAQSILAVLGFQVLLMGAVEGFRINGLDGVGNGNDLYPGGQYFDPLGLADDPVTFAELK 206
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGP+
Sbjct: 207 VKEIKNGRLAMFSMFGFFVQAIVTGKGPL 235
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEIVDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 80/147 (54%), Gaps = 14/147 (9%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 92 KNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 151
Query: 116 SLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
++ IW +V+++G+IE R + + +YPGG FDPLGLA DP L++
Sbjct: 152 HAQSILAIWACQVVLMGFIEGYRVGGGPLGEGLDSIYPGGAFDPLGLADDPEAFAELKVK 211
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM + F +QA TGKGPI
Sbjct: 212 EIKNGRLAMFSMFGFFVQAIVTGKGPI 238
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 82/156 (52%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 90 FARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP LYPGG FDPLG A DP
Sbjct: 150 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGFADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 90 FARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 150 LIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKELKNGRLAMFSIFGFFVQAIVTGKGPLENLA 242
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 128 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 187
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G IE R A +DP LYPGG FDPLGLA DP
Sbjct: 188 LIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 244
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 245 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 280
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 100 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 159
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 160 LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPI---YPGGSFDPLGLADDPDAFA 216
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGPI +A
Sbjct: 217 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 252
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWGCQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 75 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 134
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 135 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 191
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 192 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 227
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 150 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 82/151 (54%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL---TGV-----AWQDAGKVELVEGS-SYLGQP 112
R R E+IHGRWAMLG LG + E L GV W AG EG YLG P
Sbjct: 91 FARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGAQIFSEGGLDYLGNP 150
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +V+++G +E R LD V LYPGG YFDPLGLA DP
Sbjct: 151 NLVHAQSILAVLGSQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAE 210
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 100 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 159
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 160 LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPDAFA 216
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 217 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 248
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 100 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 159
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 160 LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPI---YPGGSFDPLGLADDPDAFA 216
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGPI +A
Sbjct: 217 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 252
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 82/149 (55%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E L GV W AG EG YLG P
Sbjct: 17 FARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 76
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G++E R + + ++YPGG FDPLGLA DP L+
Sbjct: 77 LVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTAAELK 136
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM + F +QA TGKGPI
Sbjct: 137 VKELKNGRLAMFSMFGFFVQAIVTGKGPI 165
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 100 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 159
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 160 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPI---YPGGSFDPLGLADDPDAFA 216
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGPI +A
Sbjct: 217 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 252
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 FVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A G+ W AG EG YLG P
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSFDPLGLAEDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 89 FARNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 148
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 149 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 205
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 206 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 241
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 80/145 (55%), Gaps = 14/145 (9%)
Query: 66 RECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPFSL 117
RE ELIH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 93 RELELIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHA 152
Query: 118 TTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
++ IW ++V+++G++E R + + ++YPGG FDPLGLA DP L++ E+
Sbjct: 153 QSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKEL 212
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPI 196
K+ RLAM + F +QA GKGPI
Sbjct: 213 KNGRLAMFSMFGFFVQAIVRGKGPI 237
>gi|302584050|gb|ADL57411.1| chloroplast LHCII type I chlorophyll a-b binding precursor protein
[Ipomoea nil]
Length = 179
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 87/161 (54%), Gaps = 22/161 (13%)
Query: 57 TEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SY 108
TE F + RE E+IH RWAMLG LG + E L+ GV W AG EG Y
Sbjct: 2 TETFA--KNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDY 59
Query: 109 LGQPLPFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASD 159
LG P ++ IW +V+++G +E R A DP LYPGG FDPLGLA D
Sbjct: 60 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDP---LYPGGSFDPLGLADD 116
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
P L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 117 PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 157
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 82/149 (55%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E L GV W AG EG YLG P
Sbjct: 88 FARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 147
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G++E R + + ++YPGG FDPLGLA DP L+
Sbjct: 148 LVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTAAELK 207
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM + F +QA TGKGPI
Sbjct: 208 VKELKNGRLAMFSMFGFFVQAIVTGKGPI 236
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP LYPGG FDPLGLA DP
Sbjct: 150 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEIVDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFNEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP LYPGG FDPLGLA DP
Sbjct: 150 LIHAQSILAIWACQVILMGAVEGYRVAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP LYPGG FDPLGLA DP
Sbjct: 150 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L GV W AG EG YLG P
Sbjct: 52 FAKNRELEVIHCRWAMLGALGCVFPELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 111
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G IE R LDP LYPGG FDPLGLA DP
Sbjct: 112 LIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFA 168
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 169 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 200
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 88 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 147
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 148 LIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 204
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 205 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 240
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 150 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 82/150 (54%), Gaps = 15/150 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+ +RE ELIH RWAMLG LG + E L+ A W AG EG YLG P
Sbjct: 51 FKAYREQELIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNP 110
Query: 113 ---LPFSLTTLIWIEVIVIGYIE-YQRNAEL--DPVKRLYPGGYFDPLGLASDPGKLENL 166
S+ ++ +V+++G IE Y+ N + + L+PG FDPLGLA DP L
Sbjct: 111 SLVHAQSILAILGCQVVLMGLIEAYRVNGGPLGEGLDTLHPGESFDPLGLADDPDTFAEL 170
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 171 KIKEIKNGRLAMFSMFGFYVQAIVTGKGPI 200
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 78/147 (53%), Gaps = 16/147 (10%)
Query: 66 RECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP---L 113
R E+IHGRWAMLG G I E L W AG EG YLG P
Sbjct: 49 RALEVIHGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVH 108
Query: 114 PFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLENLQLA 169
S+ ++ +VI++G +E R LD V LYPGG YFDPLGLA DP L++
Sbjct: 109 AQSILAVLGFQVILMGLVEGLRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 168
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM + F +QA TGKGP+
Sbjct: 169 EIKNGRLAMFSMFGFFVQAIVTGKGPL 195
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 79/152 (51%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG E L+ W AG EG YLG P
Sbjct: 92 FAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPN 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G+IE R LDP LYPGG FDPL LA DP
Sbjct: 152 LIHAQSILAIWACQVVLMGFIEGYRIGGGPLGEGLDP---LYPGGAFDPLNLAEDPEAFS 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 209 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 79/152 (51%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG E L+ W AG EG YLG P
Sbjct: 92 FAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGSPN 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G+IE R LDP LYPGG FDPL LA DP
Sbjct: 152 LIHAQSILAIWACQVVLMGFIEGYRIGGGPLGEGLDP---LYPGGAFDPLNLAEDPEAFS 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 209 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 88 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 147
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 148 LIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 204
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 205 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 240
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 81/150 (54%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 94 KNRELEVIHCRWAMLGALGCLFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 153
Query: 116 SLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW +V+++G IE R LDP LYPGG FDPLGLA DP L
Sbjct: 154 HAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFAEL 210
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 211 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQP- 112
+ RE E+IHGRWAMLG LG + E A GV W AG EG YLG P
Sbjct: 104 FAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPN 163
Query: 113 --LPFSLTTLIWIEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
S+ ++ +VI++G IE R A DP+ YPGG FDPLG A DP
Sbjct: 164 LIHAQSILAILACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGWADDPDAFA 220
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 221 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 256
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 81/150 (54%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG + E A TGV W AG EG YLG P
Sbjct: 94 KNRELEVIHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 153
Query: 116 SLTTL--IWI-EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW +V ++G IE R LDP LYPGG FDPLGLA DP L
Sbjct: 154 HAQSILAIWASQVGLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFAEL 210
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 211 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQP- 112
+ RE E+IHGRWAMLG LG + E A GV W AG EG YLG P
Sbjct: 104 FAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPN 163
Query: 113 --LPFSLTTLIWIEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
S+ ++ +VI++G IE R A DP+ YPGG FDPLG A DP
Sbjct: 164 LVHAQSILAILACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGWADDPDAFA 220
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 221 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 256
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP LYPGG FDPLGLA DP
Sbjct: 152 LIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|145079828|tpg|DAA05939.1| TPA_inf: chloroplast light-harvesting complex protein precursor
Lhcp2.3 [Micromonas sp. CCMP490]
Length = 244
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 103/205 (50%), Gaps = 28/205 (13%)
Query: 12 LGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELI 71
LG+ + +Q D + + + D+ G GE +P+ P FG ++ E E+I
Sbjct: 24 LGRRPQGVQ-GHDQVRVHHDQADIYPEFGTYPGGGE---SPIIP----FGSEKNAEREVI 75
Query: 72 HGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW 122
HGRWAMLG GA A E TG+ W AG + + + + P ++ L W
Sbjct: 76 HGRWAMLGVTGAWAAENGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFW 135
Query: 123 ----IEVIVIGYIEYQRNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIK 172
IEV+++G E R DP V + PGG FDPLGLA + G LE L++ E+K
Sbjct: 136 AVLAIEVVLVGLAEAYRTGLSDPAFDELTVGDVSPGGRFDPLGLA-ESGDLEELKIKELK 194
Query: 173 HARLAMVAFLIFGIQAAFTGKGPIS 197
H RL+M A+L +Q T +GPI+
Sbjct: 195 HCRLSMFAWLGCIMQGLATQEGPIA 219
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 97 FAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 156
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 157 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPDAFA 213
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGPI +A
Sbjct: 214 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 249
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 83/153 (54%), Gaps = 14/153 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFREGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G +E R A + V LYPGG FDPLGLA DP L+
Sbjct: 151 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVNPLYPGGSFDPLGLADDPEAFAELK 210
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
+ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 211 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW ++V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 79/149 (53%), Gaps = 16/149 (10%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTGV--------AWQDAGKVELVEGS-SYLGQP-- 112
R R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 93 RNRALEVIHGRWAMLGALGCITPEVLQKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNL 152
Query: 113 -LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLENLQ 167
S+ ++ +VI++G +E R L V LYPGG YFDPLGLA DP L+
Sbjct: 153 VHAQSILAVLGFQVILMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELK 212
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGP+
Sbjct: 213 VKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQP- 112
+ RE E+IHGRWAMLG LG + E A GV W AG EG YLG P
Sbjct: 104 FAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPN 163
Query: 113 --LPFSLTTLIWIEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
S+ ++ +VI++G IE R A DP+ YPGG FDPLG A DP
Sbjct: 164 LVHAQSILAILACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGWADDPDAFA 220
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 221 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 256
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW ++V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGAFDPLGLADDPEACA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ +IK+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKKIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDP---LYPGGSFDPLGLAEDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G IE R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDP---LYPGGTFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 DVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG +G YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G IE R A DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDP---LYPGGSFDPLGLAEDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQP- 112
+ RE E+IHGRWAMLG LG + E A GV W AG EG YLG P
Sbjct: 104 FAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPN 163
Query: 113 --LPFSLTTLIWIEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
S+ ++ +VI++G IE R A DP+ YPGG FDPLG A DP
Sbjct: 164 LVHAQSILAILACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGWADDPDAFA 220
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 221 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 256
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP LYPGG FDPLGLA DP
Sbjct: 150 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 85 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 144
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 145 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 201
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 202 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 237
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQP- 112
+ RE E+IHGRWAMLG LG + E A GV W AG EG YLG P
Sbjct: 104 FAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPN 163
Query: 113 --LPFSLTTLIWIEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
S+ ++ +VI++G IE R A DP+ YPGG FDPLG A DP
Sbjct: 164 LVHAQSILAILACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGWADDPDAFA 220
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 221 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 256
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 60 FAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 119
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G IE R LDP LYPGG FDPLGLA DP
Sbjct: 120 LIHAQSILAIWAFQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFA 176
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 177 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 208
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQP- 112
+ RE E+IHGRWAMLG LG + E A GV W AG EG YLG P
Sbjct: 104 FAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPN 163
Query: 113 --LPFSLTTLIWIEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
S+ ++ +VI++G IE R A DP+ YPGG FDPLG A DP
Sbjct: 164 LVHAQSILAILACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGWADDPDAFA 220
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 221 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 256
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G IE R A DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVQFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 80/149 (53%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPEVLSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPN 150
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G IE R + + ++YPGG FDPLGLA DP L+
Sbjct: 151 LIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGSFDPLGLADDPEAFAELK 210
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM + F +QA TGKGPI
Sbjct: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G IE R A DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 55 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 114
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 115 LVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 171
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 172 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 207
>gi|313302|emb|CAA51943.1| chlorophyll a/b /c binding protein precursor [Mantoniella squamata]
Length = 231
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 94/189 (49%), Gaps = 27/189 (14%)
Query: 28 QNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE 87
+ K D+ G GE +P+ P FG ++ E E+IHGRWAMLG GA A E
Sbjct: 26 STVVKADIYPEFGTYPGGGE---SPIIP----FGSEKNAEREVIHGRWAMLGVTGAWAAE 78
Query: 88 ALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQ 134
TG+ W AG + + + + P ++ L W IEV+++G E
Sbjct: 79 NGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWAVLAIEVVLVGLAEAY 138
Query: 135 RNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 188
R D V + PGG FDPLGLA + G LE L++ E+KH RL+M A+L QA
Sbjct: 139 RTGLSDSPFEELTVGDVSPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWLGCIFQA 197
Query: 189 AFTGKGPIS 197
T +GPI+
Sbjct: 198 LATQEGPIA 206
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP LYPGG FDPLGLA DP
Sbjct: 150 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 79/151 (52%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
R R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 91 FARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNP 150
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +VI++G +E R L V LYPGG YFDPLGLA DP
Sbjct: 151 NLVHAQSILAVLGFQVILMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAE 210
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 211 LRVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 59 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 118
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 119 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 175
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 176 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 211
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 79/149 (53%), Gaps = 16/149 (10%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP-- 112
R R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 93 RNRALEVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNPNL 152
Query: 113 -LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLENLQ 167
S+ ++ +VI++G +E R L V LYPGG YFDPLGLA DP L+
Sbjct: 153 VHAQSILAVLGFQVILMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELK 212
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGP+
Sbjct: 213 VKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 81/151 (53%), Gaps = 17/151 (11%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+ +RE ELIH RWAMLG LG + E L+ A W AG EG YLG P
Sbjct: 70 FKAYREQELIHARWAMLGALGCVTPEILSKYAGVSLGESVWFKAGSQIFQEGGLDYLGNP 129
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLEN 165
S+ ++ +V+++G IE R P+ + L+PG FDPLGLA DP
Sbjct: 130 SLVHAQSILAILGCQVVLMGLIEAYR-VNGGPLGKGLDVLHPGEKFDPLGLADDPDTFAE 188
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 189 LKVKEIKNGRLAMFSMFGFYVQAIVTGKGPI 219
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 59 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 118
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 119 LIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 175
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 176 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 211
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG +G YLG P
Sbjct: 96 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSDGGLDYLGNPS 155
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 156 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPI---YPGGSFDPLGLADDPDAFA 212
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGPI +A
Sbjct: 213 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 248
>gi|15218330|ref|NP_173034.1| light harvesting complex photosystem II subunit 6 [Arabidopsis
thaliana]
gi|8927661|gb|AAF82152.1|AC034256_16 Identical to Lhcb6 protein from Arabidopsis thaliana gb|AF134130
and is a member of the Chlorophyll A-B binding proteins
PF|00504. ESTs gb|AI100562, gb|AI999227, gb|AA067457,
gb|BE037598, gb|BE039058, gb|BE038945, gb|BE038657,
gb|BE038604, gb|H76294, gb|H77256, gb|N65776, gb|N38000,
gb|R90377, gb|R90578, gb|R90082, gb|T44923, gb|T76598,
gb|T04144, gb|T43786, gb|T76834, gb|T04153, gb|T45475,
gb|T76179, gb|T46781, gb|T45938, gb|T45430, gb|W43165,
gb|Z18774 come from this gene [Arabidopsis thaliana]
gi|12083258|gb|AAG48788.1|AF332425_1 putative chlorophyll binding protein [Arabidopsis thaliana]
gi|17473665|gb|AAL38289.1| Lhcb6 protein [Arabidopsis thaliana]
gi|20148631|gb|AAM10206.1| chlorophyll A-B binding protein [Arabidopsis thaliana]
gi|332191248|gb|AEE29369.1| light harvesting complex photosystem II subunit 6 [Arabidopsis
thaliana]
Length = 258
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 103/230 (44%), Gaps = 91/230 (39%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 79 GDFGFDPLGLGKDPAFLKW----------------------------------------- 97
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQP---LPFSLTT 119
+RE ELIHGRWAM LG +A +GVAW +AG QP PFS +
Sbjct: 98 --YREAELIHGRWAMAAVLGIFVGQAWSGVAWFEAGA-----------QPDAIAPFSFGS 144
Query: 120 LIWIEVIVIGYIEYQR-----NAELDPVK------------------RLYPGG-YFDPLG 155
L+ +++++G++E +R N + V+ + YPGG +FDPLG
Sbjct: 145 LLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGRFFDPLG 204
Query: 156 LAS---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LA D KLE L+LAEIKH+RLAMVA LIF +A GK P+
Sbjct: 205 LAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAMLIFYFEAG-QGKTPL 253
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG + FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 78 PGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 124
>gi|4741960|gb|AAD28777.1|AF134130_1 Lhcb6 protein [Arabidopsis thaliana]
Length = 258
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 103/230 (44%), Gaps = 91/230 (39%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 79 GDFGFDPLGLGKDPAFLKW----------------------------------------- 97
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQP---LPFSLTT 119
+RE ELIHGRWAM LG +A +GVAW +AG QP PFS +
Sbjct: 98 --YREAELIHGRWAMAAVLGIFVGQAWSGVAWFEAGA-----------QPDAIAPFSFGS 144
Query: 120 LIWIEVIVIGYIEYQR-----NAELDPVK------------------RLYPGG-YFDPLG 155
L+ +++++G++E +R N + V+ + YPGG +FDPLG
Sbjct: 145 LLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGRFFDPLG 204
Query: 156 LAS---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LA D KLE L+LAEIKH+RLAMVA LIF +A GK P+
Sbjct: 205 LAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAMLIFYFEAG-QGKTPL 253
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 16/117 (13%)
Query: 79 GTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAE 138
G GA A+ + G Q G+ L+ ++ QP WI + G
Sbjct: 21 GKRGATALASGVGTGAQRVGRKTLIVAAA-AAQP------KKSWIPAVKGG------GNF 67
Query: 139 LDP--VKRLYPGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
LDP + PG + FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 68 LDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 124
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 80/147 (54%), Gaps = 14/147 (9%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 92 KNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLI 151
Query: 116 SLTTL--IWI-EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
++ IW +V+++G IE R + + +LYPGG FDPLGLA DP L++
Sbjct: 152 HAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDKLYPGGAFDPLGLADDPEAFAELKVK 211
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
E+K+ RLAM + F +QA TGKGPI
Sbjct: 212 ELKNGRLAMFSMFGFFVQAIVTGKGPI 238
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP LYPGG FDPLGLA DP
Sbjct: 153 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 89 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 148
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 149 LIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 205
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + L F +QA TGKGP+ +A
Sbjct: 206 ELKVKELKNGRLAMFSMLGFFVQAIVTGKGPLENLA 241
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 86 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 145
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 146 LIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 202
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 203 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 238
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 80 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 139
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 140 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 196
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 197 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 232
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 96 FAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 155
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP LYPGG FDPLGLA DP
Sbjct: 156 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFA 212
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 213 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 248
>gi|313300|emb|CAA51944.1| chlorophyll a/b /c binding protein precursor [Mantoniella squamata]
Length = 222
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 94/189 (49%), Gaps = 27/189 (14%)
Query: 28 QNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE 87
+ K D+ G GE +P+ P FG ++ E E+IHGRWAMLG GA A E
Sbjct: 17 STVVKADIYPEFGTYPGGGE---SPIIP----FGSEKNAEREVIHGRWAMLGVTGAWAAE 69
Query: 88 ALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQ 134
TG+ W AG + + + + P ++ L W IEV+++G E
Sbjct: 70 NGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWAVLAIEVVLVGLAEAY 129
Query: 135 RNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 188
R D V + PGG FDPLGLA + G LE L++ E+KH RL+M A+L QA
Sbjct: 130 RTGLSDSPFEELTVGDVSPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWLGCIFQA 188
Query: 189 AFTGKGPIS 197
T +GPI+
Sbjct: 189 LATQEGPIA 197
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 104 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPN 163
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G IE R A DP+ YPGG FDPLGLA DP
Sbjct: 164 LVHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGLADDPDAFA 220
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 221 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 256
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 82/150 (54%), Gaps = 15/150 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+ +RE ELIH RWAMLG LG + E L+ A W AG EG YLG P
Sbjct: 70 FKAYREQELIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNP 129
Query: 113 ---LPFSLTTLIWIEVIVIGYIE-YQRNAEL--DPVKRLYPGGYFDPLGLASDPGKLENL 166
S+ ++ +V+++G IE Y+ N + + L+PG FDPLGLA DP L
Sbjct: 130 SLVHAQSILAILGCQVVLMGLIEAYRVNGGPLGEGLDVLHPGEKFDPLGLADDPDTFAEL 189
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 190 KVKEIKNGRLAMFSMFGFYVQAIVTGKGPI 219
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 150 LIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b binding protein [Hedera helix]
Length = 193
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 19 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 78
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 79 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 135
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 136 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 171
>gi|293218|gb|AAA20111.1| chlorophyll a/b binding protein [Mantoniella squamata]
gi|311364|emb|CAA80458.1| chlorophyll a/b binding protein [Mantoniella squamata]
Length = 231
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 93/189 (49%), Gaps = 27/189 (14%)
Query: 28 QNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE 87
+ K D+ G GE +P+ P FG ++ E E+IHGRWAMLG GA A E
Sbjct: 26 STVVKADIYPEFGTYPGGGE---SPIIP----FGSEKNAEREVIHGRWAMLGVTGAWAAE 78
Query: 88 ALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQ 134
TG+ W AG + + + + P ++ L W IEV+++G E
Sbjct: 79 NGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWAVLAIEVVLVGLAEAY 138
Query: 135 RNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 188
R D V + PGG FDPLGLA G LE L++ E+KH RL+M A+L QA
Sbjct: 139 RTGLSDSPFEELTVGDVSPGGRFDPLGLAGS-GDLEELKIKELKHCRLSMFAWLGCIFQA 197
Query: 189 AFTGKGPIS 197
T +GPI+
Sbjct: 198 LATQEGPIA 206
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 82/151 (54%), Gaps = 20/151 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 65 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 124
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW ++VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 125 LVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 181
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGP 195
L++ E+K+ RLAM + F +QA TGKGP
Sbjct: 182 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 212
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP LYPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 80/150 (53%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG E L GV W AG EG YLG P
Sbjct: 93 KNRELEVIHSRWAMLGALGCTFPEILERNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 152
Query: 116 SLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW +V+++G IE R LDP LYPGG FDPLGLA DP L
Sbjct: 153 HAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPDAFAEL 209
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 150 LIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 87 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFMAGSQIFSEGGLDYLGNPS 146
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 147 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEIVDP---LYPGGSFDPLGLADDPEAFA 203
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 204 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 239
>gi|242074752|ref|XP_002447312.1| hypothetical protein SORBIDRAFT_06g032690 [Sorghum bicolor]
gi|241938495|gb|EES11640.1| hypothetical protein SORBIDRAFT_06g032690 [Sorghum bicolor]
Length = 255
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 99/227 (43%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 76 GDFGFDPLGLGKDPAFLKW----------------------------------------- 94
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM LG +A +G+ W +AG G PFS +L+
Sbjct: 95 --YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLLG 144
Query: 123 IEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS 158
+++++G++E +R + P R YPGG +FDPLGLA
Sbjct: 145 TQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANFTGEQGYPGGKFFDPLGLAG 204
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKHARLAM+A LIF +A GK P+
Sbjct: 205 TVKDGVYIPDVDKLERLKLAEIKHARLAMLAMLIFYFEAG-QGKTPL 250
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG + FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 75 PGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 121
>gi|412986902|emb|CCO15328.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Bathycoccus prasinos]
Length = 230
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 94/189 (49%), Gaps = 27/189 (14%)
Query: 28 QNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE 87
+ K D+ G GE +P+ P FG ++ E E+IHGRWA LG GA A E
Sbjct: 25 SKVVKADIYPEFGTYPGGGE---SPIIP----FGDEKNAEREIIHGRWAQLGVTGAWAAE 77
Query: 88 ALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQ 134
TG+ W AG + + + + P ++ L W IE +++G E
Sbjct: 78 NGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWNVLIIETVLVGAAEGY 137
Query: 135 RNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 188
R +DP V + PGG FDPLGLA + G LE L++ E+KH RL+M A+L QA
Sbjct: 138 RTGLIDPVFDELSVGDVSPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWLGCIFQA 196
Query: 189 AFTGKGPIS 197
T +GPI+
Sbjct: 197 LATQEGPIA 205
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 82/150 (54%), Gaps = 15/150 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+ +RE ELIH RWAMLG LG + E L+ A W AG EG YLG P
Sbjct: 70 FKAYREQELIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNP 129
Query: 113 ---LPFSLTTLIWIEVIVIGYIE-YQRNAEL--DPVKRLYPGGYFDPLGLASDPGKLENL 166
S+ ++ +V+++G IE Y+ N + + L+PG FDPLGLA DP L
Sbjct: 130 SLVHAQSILAILGCQVVLMGLIEAYRVNGGPLGEGLDVLHPGEKFDPLGLADDPDTFAEL 189
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 190 KVKEIKNGRLAMFSMFGFYVQAIVTGKGPI 219
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 87 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 146
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP LYPGG FDPLGLA DP
Sbjct: 147 LIHAQSILAIWATQVLLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFA 203
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGPI +A
Sbjct: 204 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 239
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 94 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 153
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP+ YPGG FDPLGLA DP
Sbjct: 154 LIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPI---YPGGSFDPLGLADDPEAFA 210
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 211 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 246
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 82/151 (54%), Gaps = 17/151 (11%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQP--- 112
++RE E+IH RWAMLG LG I E A GV W AG +G +YLG
Sbjct: 74 KYREIEVIHARWAMLGALGCITPELLAKNGVPFGEAVWFKAGAQIFQDGGLNYLGNENLV 133
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAELDP------VKRLYPGGYFDPLGLASDPGKLENL 166
S+ + ++V+++G E R P + LYPGG FDPLGLA DP L L
Sbjct: 134 HAQSILATLAVQVLLMGAAESYRANGGAPGGFGEDLDSLYPGGAFDPLGLADDPDTLAEL 193
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
++ EIK+ RLAM + F +QA TG+GPI+
Sbjct: 194 KVKEIKNGRLAMFSMFGFFVQAIVTGQGPIA 224
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 80/149 (53%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G++E R + + +YPGG FDPLGLA DP L+
Sbjct: 151 LVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDAIYPGGAFDPLGLADDPDAFAELK 210
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGPI
Sbjct: 211 VKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 86/156 (55%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQP- 112
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 89 FAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPG 148
Query: 113 LPFSLTTL-IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
L + + L IW +VI++G +E R +DP LYPGG FDPLGLA DP
Sbjct: 149 LVHAQSILAIWACQVILMGAVEGYRIGGGPLGEVIDP---LYPGGSFDPLGLADDPEAFA 205
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 206 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 241
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP LYPGG FDPLGLA DP
Sbjct: 153 LIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEITDPI---YPGGSFDPLGLADDPEAFS 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 87/157 (55%), Gaps = 21/157 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGVA------WQDAGKVELVEGS-SYLGQP 112
+R+R+ ELIH RWA+LG LG + E A GVA W G EG +YLG
Sbjct: 82 FKRYRQLELIHARWALLGALGCVVPELLARNGVAMPADGVWFKVGAEIFKEGGLNYLGNE 141
Query: 113 ---LPFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKL 163
S+ + ++++++G+ E Y+ N LDP LYPGG FDPLGLA DP L
Sbjct: 142 NLVHAQSIVATLLVQLVLMGWAEGYRINGGPLGEGLDP---LYPGGAFDPLGLADDPDTL 198
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ R+AM A F +QA T KGP+ +A
Sbjct: 199 AELKVKELKNGRMAMAAMFGFLVQAIVTQKGPLENLA 235
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 85/154 (55%), Gaps = 16/154 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 64 FAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 123
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENL 166
++ IW +VI++G +E R A P+ + LYPGG FDPLGLA DP L
Sbjct: 124 LVHAQSILAIWATQVILMGAVEGYRVAG-GPLGKVTGPLYPGGSFDPLGLADDPEAFAEL 182
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 183 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 216
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 89 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 148
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 149 LIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 205
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 206 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 241
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 79/151 (52%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
+ R E+IHGRWAMLG G I E L W AG EG YLG P
Sbjct: 88 FAKNRALEVIHGRWAMLGAFGCITPEVLEKWVKVDFKEPVWFKAGSQIFTEGGLDYLGNP 147
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +V+++G +E R L V LYPGG YFDPLGLA DP L
Sbjct: 148 NLVHAQSILAVLGFQVVLMGLVESFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTLAE 207
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 238
>gi|357163903|ref|XP_003579885.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Brachypodium distachyon]
Length = 256
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 100/229 (43%), Gaps = 85/229 (37%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLGK +L++
Sbjct: 75 LPGDFGFDPLGLGKDPAFLKW--------------------------------------- 95
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
+RE ELIHGRWAM LG +A +GV W +AG + G PFS +L
Sbjct: 96 ----YREAELIHGRWAMAAVLGIFVGQAYSGVPWFEAG--------AQPGAVAPFSFGSL 143
Query: 121 IWIEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGL 156
+ +++++G++E +R + P R YPGG +FDPLGL
Sbjct: 144 LGTQLLLMGWVESKRWVDFFNPDSQAVEWATPWSRTADNFANSTGDQGYPGGKFFDPLGL 203
Query: 157 AS---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKHARLAM+A LIF +A GK P+
Sbjct: 204 GGDTKDGVYIPDTDKLERLKLAEIKHARLAMLAMLIFYFEAG-QGKTPL 251
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP LYPGG FDPLGLA DP
Sbjct: 150 LVHAQSILAIWASQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFS 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 79/149 (53%), Gaps = 16/149 (10%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP-- 112
R R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 92 RNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNPNL 151
Query: 113 -LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLENLQ 167
S+ ++ +V+++G +E R L V LYPGG YFDPLGLA DP L+
Sbjct: 152 VHAQSILAVLGFQVVLMGLVEGFRINGLPGVGDGNNLYPGGQYFDPLGLADDPVTFAELK 211
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGP+
Sbjct: 212 VKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
>gi|145079253|tpg|DAA05906.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm8 [Acetabularia acetabulum]
Length = 220
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 82/153 (53%), Gaps = 21/153 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT---GVA-----WQDAGKVELVEGS-SYLGQP 112
+ +RE ELIH RWAMLG LG + E L+ GV+ W AG EG YLG
Sbjct: 71 FKAYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNS 130
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKL 163
S+ ++ +V+++G IE R LDP L+PG FDPLGLA DP
Sbjct: 131 NLIHAQSILAILGCQVVLMGLIEAYRVNGGPLGEGLDP---LHPGDKFDPLGLADDPDTF 187
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 188 AELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPI 220
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 89 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 148
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 149 LIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 205
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 206 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 241
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 79/151 (52%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
R R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 92 FARNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP 151
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +V+++G +E R L V LYPGG YFDPLGLA DP
Sbjct: 152 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAE 211
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
>gi|224070503|ref|XP_002303160.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
gi|118487218|gb|ABK95437.1| unknown [Populus trichocarpa]
gi|118489807|gb|ABK96703.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222840592|gb|EEE78139.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
Length = 257
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 100/227 (44%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 78 GDYGFDPLGLGKDPAFLKW----------------------------------------- 96
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM +G +A +G+ W +AG G PFS +L+
Sbjct: 97 --YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLLG 146
Query: 123 IEVIVIGYIEYQR-----NAELDPVK------------------RLYPGG-YFDPLGLAS 158
++I++G++E +R N E V+ + YPGG +FDPLG A
Sbjct: 147 TQLILMGWVESKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFAG 206
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKHARLAM+A LIF +A GK P+
Sbjct: 207 TLKNGVYIPDEEKLERLKLAEIKHARLAMIAMLIFYFEAG-QGKTPL 252
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG Y FDPLGL DP L+ + AE+ H R AM A + + A++G
Sbjct: 77 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 123
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 150 LIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 82/149 (55%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPEILARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G++E R + + ++YPGG FDPLGLA DP L+
Sbjct: 151 LVHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGSFDPLGLADDPEAFAELK 210
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM + F +QA TGKGPI
Sbjct: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDP---LYPGGSFDPLGLAEDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E K+ RLAM + F IQA TGKGP+ +A
Sbjct: 210 ELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLA 245
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 80/152 (52%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG E L GV W AG EG YLG P
Sbjct: 91 FARNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G++E R LDP LYPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPDAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ E+K+ RLAM + F +QA T KGP+
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTDKGPV 239
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 78/152 (51%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG E L+ W AG EG YLG P
Sbjct: 92 FAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPN 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G+IE R LDP LYPGG FDPL LA DP
Sbjct: 152 LIHAQSILAIWACQVVLMGFIEGYRIGGGPLGEGLDP---LYPGGAFDPLNLAEDPEAFS 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ E+K+ RLAM F +QA TGKGPI
Sbjct: 209 ELKVKELKNGRLAMFPMFGFFVQAIVTGKGPI 240
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVQFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TG GPI +A
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGNGPIENLA 243
>gi|115833|sp|P27524.1|CB4A_SOLLC RecName: Full=Chlorophyll a-b binding protein CP24 10A,
chloroplastic; Short=CAB-10A; Short=LHCP; Flags:
Precursor
gi|170394|gb|AAA34143.1| a-binding protein [Solanum lycopersicum]
Length = 256
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 99/227 (43%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 77 GDYGFDPLGLGKDPAFLKW----------------------------------------- 95
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM LG +A +G+ W +AG G PFS TL+
Sbjct: 96 --YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGTLLG 145
Query: 123 IEVIVIGYIEYQRNAE-LDPVKRL----------------------YPGG-YFDPLGLAS 158
++I++G++E +R + DP + YPGG +FDPL LA
Sbjct: 146 TQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAG 205
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L++AEIKHARLAM+A LIF +A GK P+
Sbjct: 206 TLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEAG-QGKTPL 251
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG Y FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 76 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 122
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 89 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 148
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 149 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEITDPI---YPGGSFDPLGLADDPEAFA 205
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 206 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 241
>gi|168068370|ref|XP_001786045.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662226|gb|EDQ49142.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 83/157 (52%), Gaps = 15/157 (9%)
Query: 59 VFGLQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--Y 108
+ L+ ++ ELIH RWA+L G + A W G + L+EG S Y
Sbjct: 28 LMSLKSYQAYELIHARWAILRAAGFVPPNAFNKFGSVCGPEAMWWKTGAL-LLEGDSIKY 86
Query: 109 LGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPV----KRLYPGGYFDPLGLASDPGKLE 164
G +P +L + EV ++G EY R+ P+ RL+PGG FDPLGLA DP +
Sbjct: 87 FGATVPINLAAAVISEVNLVGGSEYYRSTNKSPLGSDLDRLHPGGAFDPLGLAKDPDQFA 146
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
L++ EI + RLAM + L F ++A TG+GP+ +A
Sbjct: 147 LLKVKEIMNGRLAMFSMLGFFVKAYVTGEGPVENLAA 183
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWATQVLLMGAVEGYRIAGGPLGEVIDP---LYPGGSFDPLGLADDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWASQVVLMGAVEGYRVAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 151 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 151 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 89 FARNRELEVIHSRWAMLGALGIVFPEPLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 148
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP YPGG FDPLGLA DP
Sbjct: 149 LIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPT---YPGGSFDPLGLADDPEAFA 205
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 206 ELKVKELKNGRLAMFSVFGFFVQAIVTGKGPLENLA 241
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 99/227 (43%), Gaps = 73/227 (32%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD G+DPLGLGK E +
Sbjct: 79 LAGDYGYDPLGLGKDPETVA---------------------------------------- 98
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEAL-------TGVAWQDAGKVELVEGS-SYLGQP 112
++RE EL+H RWAML G + E L G W + G L G+ +Y P
Sbjct: 99 ---KYRENELLHARWAMLAAAGILIPEGLQANGANIKGGTWFETGAEMLNGGTLNYFAVP 155
Query: 113 L-----PFSLTTLIWIEVIVIGYIE-YQRNAE----------------LDPVKRLYPGGY 150
P L +I +EV ++G +E Y+RN D + LYPGG
Sbjct: 156 WGIVSNPLPLFAVIAVEVGLMGAVEFYRRNGTGPAGYSPGIGKFDSSVFDGLDPLYPGGP 215
Query: 151 FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
FDPLGLA DP L+ L++ EIK+ RLAMV+ L F +Q+ TG+GP +
Sbjct: 216 FDPLGLADDPEVLQELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYA 262
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 80/147 (54%), Gaps = 15/147 (10%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEAL---TGV-----AWQDAGKVELVEGS-SYLGQPL-- 113
+RE E+IH RWAMLG LG + E L +GV W AG EG YLG P
Sbjct: 174 YRETEVIHARWAMLGALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLV 233
Query: 114 -PFSLTTLIWIEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
S+ ++ +VI++G E R + + + PGG FDPLGLA DP L++
Sbjct: 234 HAQSILAILACQVILMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVK 293
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM + L F +QA TGKGP+
Sbjct: 294 EIKNGRLAMFSMLGFYVQAIATGKGPV 320
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 99/227 (43%), Gaps = 73/227 (32%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD G+DPLGLGK E +
Sbjct: 49 LAGDYGYDPLGLGKDPETVA---------------------------------------- 68
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEAL-------TGVAWQDAGKVELVEGS-SYLGQP 112
++RE EL+H RWAML G + E L G W + G L G+ +Y P
Sbjct: 69 ---KYRENELLHARWAMLAAAGILIPEGLQANGANIKGGTWFETGAEMLNGGTLNYFAVP 125
Query: 113 L-----PFSLTTLIWIEVIVIGYIE-YQRNAE----------------LDPVKRLYPGGY 150
P L +I +EV ++G +E Y+RN D + LYPGG
Sbjct: 126 WGIVSNPLPLFAVIAVEVGLMGAVEFYRRNGSGPAGYSPGIGKFDSSVFDGLDPLYPGGP 185
Query: 151 FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
FDPLGLA DP L+ L++ EIK+ RLAMV+ L F +Q+ TG+GP +
Sbjct: 186 FDPLGLADDPEVLQELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYA 232
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 79/151 (52%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
+ R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 87 FAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP 146
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +V+++G +E R L V LYPGG YFDPLGLA DP
Sbjct: 147 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPATFAE 206
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 207 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 237
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 151 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 82/149 (55%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GVA-----WQDAGKVELVEGS-SYLGQPL 113
R E E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 91 FARNLELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPN 150
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G++E R + + ++YPGG FDPLGLA DP L+
Sbjct: 151 LIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELK 210
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGPI
Sbjct: 211 VKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 65 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 124
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW ++VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 125 LVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 181
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 182 EXKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 217
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ IK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 79/151 (52%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGV--------AWQDAGKVELVEGS-SYLGQP 112
R R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 55 FARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNP 114
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +V+++G +E R L V LYPGG YFDPLGLA DP
Sbjct: 115 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGDGNNLYPGGQYFDPLGLADDPVTFAE 174
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 175 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 205
>gi|104763696|gb|ABF74606.1| chloroplast chlorophyll a/b-binding protein [Agave tequilana]
Length = 186
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 12 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 71
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP LYPGG FDPLGLA DP
Sbjct: 72 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFA 128
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 129 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 164
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 150 LIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 80/149 (53%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 89 FARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 148
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G++E R + + ++YPGG FDPLGLA DP L+
Sbjct: 149 LVHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELK 208
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ LAM + F +QA TGKGPI
Sbjct: 209 VKELKNGSLAMFSMFGFFVQAIVTGKGPI 237
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG +G YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSQGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 150 LIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 81 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 140
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 141 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 197
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 198 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 233
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 83/153 (54%), Gaps = 14/153 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 49 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 108
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G +E R A + V LYPGG FDPLGLA DP L+
Sbjct: 109 LVHAQSILAIWATQVLLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELK 168
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
+ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 169 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 201
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IHGRWAMLG LG + E A GV W G EG YLG P
Sbjct: 90 FAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA D
Sbjct: 150 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLADDAEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 152
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R +DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWASQVILMGAVEGYRIGGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 150 LIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEITDPI---YPGGSFDPLGLADDPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPI---YPGGSFDPLGLADDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 82/147 (55%), Gaps = 15/147 (10%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEAL---TGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
+RE E+IH RWAMLG LG + E L +GV W AG EG YLG P
Sbjct: 161 YRETEVIHARWAMLGALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLV 220
Query: 116 ---SLTTLIWIEVIVIGYIE-YQRNA--ELDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
S+ ++ +VI++G E Y+ N + + + PGG FDPLGLA DP L++
Sbjct: 221 HAQSILAILACQVILMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVK 280
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM + L F +QA TGKGP+
Sbjct: 281 EIKNGRLAMFSMLGFYVQAIATGKGPV 307
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFG 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K RLAM++ F +QA TGKGP+ +A
Sbjct: 208 ELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLA 243
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 82/156 (52%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 100 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 159
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 160 LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPDAFA 216
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RL M + F +QA TGKGPI +A
Sbjct: 217 ELKVKEIKNGRLTMFSMFGFFVQAIVTGKGPIEDLA 252
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 86/148 (58%), Gaps = 12/148 (8%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPL 113
R++ ELIH RWAMLG G I EA W G + L+EG++ Y G +
Sbjct: 112 RYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGAL-LLEGNTLNYFGNSI 170
Query: 114 PFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIK 172
P +L + EV+++G EY R LD +L+PGG FDPLGLASDP + L++ EIK
Sbjct: 171 PINLAVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIK 230
Query: 173 HARLAMVAFLIFGIQAAFTGKGPISFVA 200
+ RLAM + L F IQA TG+GP+ +A
Sbjct: 231 NGRLAMFSMLGFFIQAYVTGEGPVENLA 258
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG +G YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG I E A GV W AG EG YLG P
Sbjct: 103 FAKNRELEVIHSRWAMLGALGCIFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPN 162
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW ++V+++G +E R A DP LYPG FDPLGLA DP
Sbjct: 163 LIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEITDP---LYPGNSFDPLGLADDPEAFA 219
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 220 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 255
>gi|308812366|ref|XP_003083490.1| prasinophyte specific LHC gene (IC) [Ostreococcus tauri]
gi|63029291|gb|AAY27544.1| chloroplast prasinophyte chlorophyll a/b-binding protein Lhcp2.1
[Ostreococcus tauri]
gi|116055371|emb|CAL58039.1| prasinophyte specific LHC gene (IC), partial [Ostreococcus tauri]
Length = 233
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 93/186 (50%), Gaps = 28/186 (15%)
Query: 32 KNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTG 91
K D+ G GE +P+ P FG ++ E E+IHGRWAMLG GA A E TG
Sbjct: 31 KADIYPEFGTYPGGGE---SPIIP----FGSEKNAEREVIHGRWAMLGVTGAWAAENGTG 83
Query: 92 VAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQRNAE 138
+ W AG + + + + P ++ L W IE++++G E R
Sbjct: 84 IPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWNVLIIEIVLVGAAEAYRTGI 143
Query: 139 LDP-------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFT 191
D V + PGG FDPLGLA + G LE L++ E+KH RL+M A+L QA T
Sbjct: 144 SDSPFDDGLTVGDVNPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWLGCIFQALAT 202
Query: 192 GKGPIS 197
+GPI+
Sbjct: 203 QEGPIA 208
>gi|671737|emb|CAA52749.1| Chloropyll a/b binding protein [Amaranthus hypochondriacus]
Length = 186
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 12 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 71
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 72 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPDAFA 128
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ LAM + F +QA TGKGP+ +A
Sbjct: 129 ELKVKEIKNGMLAMFSMFGFFVQAIVTGKGPLENLA 164
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW + +++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWACQAVLMGAVEGYRIAGGPLGEIVDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 80/149 (53%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
R RE +IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 89 FARNRELGVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 148
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G++E R + + ++YPGG FDPLGLA DP L+
Sbjct: 149 LVHAQSILAIWASQVVLMGFVEGYRIGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELK 208
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM + F +QA TGKGPI
Sbjct: 209 VKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 83/154 (53%), Gaps = 18/154 (11%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQP- 112
R+RE E+IH RWAMLG LG I E A GV W AG +G +YLG
Sbjct: 70 FSRYREVEVIHARWAMLGALGCITPELLAKNGVPFGEAVWFKAGAQIFQDGGLNYLGNEN 129
Query: 113 --LPFSLTTLIWIEVIVIGYIEYQRNAELDP------VKRLYPGG-YFDPLGLASDPGKL 163
S+ + ++VI++G E R P + LYPGG +FDPLGLA DP L
Sbjct: 130 LVHAQSILATLAVQVILMGAAEAYRANGGAPGGFGEDLDSLYPGGKFFDPLGLADDPDTL 189
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
L++ E+K+ RLAM + F +QA TG+GPI+
Sbjct: 190 AELKVKELKNGRLAMFSMFGFFVQAIVTGQGPIA 223
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 79/151 (52%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+ R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 23 FAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP 82
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +V+++G +E R L V LYPGG YFDPLGLA DP
Sbjct: 83 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPTTFAE 142
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 143 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 173
>gi|308806061|ref|XP_003080342.1| prasinophyte specific LHC (IC) [Ostreococcus tauri]
gi|63029309|gb|AAY27553.1| chloroplast prasinophyte chlorophyll a/b-binding protein Lhcp2.3
[Ostreococcus tauri]
gi|116058802|emb|CAL54509.1| prasinophyte specific LHC (IC), partial [Ostreococcus tauri]
Length = 233
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 93/186 (50%), Gaps = 28/186 (15%)
Query: 32 KNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTG 91
K D+ G GE +P+ P FG ++ E E+IHGRWAMLG GA A E TG
Sbjct: 31 KADIYPEFGTYPGGGE---SPIIP----FGSEKNAEREVIHGRWAMLGVTGAWAAENGTG 83
Query: 92 VAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQRNAE 138
+ W AG + + + + P ++ L W IE++++G E R
Sbjct: 84 IPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWNVLIIEIVLVGAAEAYRTGI 143
Query: 139 LDP-------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFT 191
D V + PGG FDPLGLA + G LE L++ E+KH RL+M A+L QA T
Sbjct: 144 SDSPFDDGLTVGDVNPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWLGCIFQALAT 202
Query: 192 GKGPIS 197
+GPI+
Sbjct: 203 QEGPIA 208
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 82/156 (52%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 97 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 156
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 157 LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPI---YPGGSFDPLGLADDPDAFA 213
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F QA TGKGPI +A
Sbjct: 214 ELKVKELKNGRLAMFSMFGFFXQAIVTGKGPIENLA 249
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 104 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGWLDYLGSPN 163
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G IE R A DP+ YPGG FDPLGLA DP
Sbjct: 164 LVHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGLADDPDAFA 220
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 221 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 256
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 78/147 (53%), Gaps = 16/147 (10%)
Query: 66 RECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP---L 113
R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 94 RALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVH 153
Query: 114 PFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLENLQLA 169
S+ ++ +V+++G +E R L V LYPGG YFDPLGLA DP L++
Sbjct: 154 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVK 213
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM + F +QA TGKGP+
Sbjct: 214 EIKNGRLAMFSMFGFFVQAIVTGKGPL 240
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGESVWFKAGAQIFSEGGLDYLGNPN 150
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G++E R LDP+ YPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDPI---YPGGAFDPLGLADDPDAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ E+K+ RLA + F +QA TGKGP+
Sbjct: 208 ELKVKELKNGRLATFSMFGFFVQAIVTGKGPV 239
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 92 FSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA P +
Sbjct: 152 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDP---LYPGGRFDPLGLAERPQAFD 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ALKVKEIKNGRLAMFSMFGFLVQAIVTGKGPLENLA 244
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG +LG P
Sbjct: 97 FAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDHLGNPS 156
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 157 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPDAFA 213
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGPI +A
Sbjct: 214 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 249
>gi|63029307|gb|AAY27552.1| chloroplast prasinophyte chlorophyll a/b-binding protein Lhcp2.2
[Ostreococcus tauri]
Length = 233
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 93/186 (50%), Gaps = 28/186 (15%)
Query: 32 KNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTG 91
K D+ G GE +P+ P FG ++ E E+IHGRWAMLG GA A E TG
Sbjct: 31 KADIYPEFGTYPGGGE---SPIIP----FGSEKNAEREVIHGRWAMLGVTGAWAAENGTG 83
Query: 92 VAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQRNAE 138
+ W AG + + + + P ++ L W IE++++G E R
Sbjct: 84 IPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWNVLIIEIVLVGAAEAYRTGI 143
Query: 139 LDP-------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFT 191
D V + PGG FDPLGLA + G LE L++ E+KH RL+M A+L QA T
Sbjct: 144 SDSPFDDGLTVGDVNPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWLGCIFQALAT 202
Query: 192 GKGPIS 197
+GPI+
Sbjct: 203 QEGPIA 208
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 78/151 (51%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
R R E+IHGRWAMLG G I E L W AG EG YLG P
Sbjct: 93 FARNRALEVIHGRWAMLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP 152
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +V+++G +E R L V LYPGG YFDPLGLA DP
Sbjct: 153 NLVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGEGNDLYPGGPYFDPLGLADDPVTFAE 212
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 213 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 243
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 80/147 (54%), Gaps = 14/147 (9%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 93 KNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLV 152
Query: 116 SLTTL--IWI-EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
++ IW +V+++G IE R + + ++YPGG FDPLGLA DP L++
Sbjct: 153 HAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGSFDPLGLADDPEAFAELKVK 212
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
E+K+ RLAM + F +QA TGKGP+
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPV 239
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 78/151 (51%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
R R E+IHGRWAMLG G I E L W AG EG YLG P
Sbjct: 93 FARNRALEVIHGRWAMLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP 152
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +V+++G +E R L V LYPGG YFDPLGLA DP
Sbjct: 153 NLVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGEGNDLYPGGPYFDPLGLADDPVTFAE 212
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 213 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 243
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 80/152 (52%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 98 FAKNRELEVIHSRWAMLGALGCVFPELLSKNGIKFGEAVWFKAGSQIFKEGGLDYLGNPS 157
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 158 LVHAQSILAIWASQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLAEDPEAFA 214
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ E+K+ RLAM + F +QA TGKGP+
Sbjct: 215 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 246
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 79/151 (52%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
+ R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 87 FAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP 146
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +V+++G +E R L V LYPGG YFDPLGLA DP
Sbjct: 147 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAE 206
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 207 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 237
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 80/152 (52%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 89 FAKNRELEVIHSRWAMLGALGCVFPELLSKNGIKFGEAVWFKAGSQIFKEGGLDYLGNPS 148
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 149 LVHAQSILAIWASQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLAEDPEAFA 205
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ E+K+ RLAM + F +QA TGKGP+
Sbjct: 206 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 237
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 79/149 (53%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA-------WQDAGKVELVEGS-SYLGQP- 112
++RE ELIH RWAMLG LG + EAL W AG EG YLG
Sbjct: 182 FAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLGNSN 241
Query: 113 --LPFSLTTLIWIEVIVIGYIE-YQRNAEL--DPVKRLYPGGYFDPLGLASDPGKLENLQ 167
S+ ++ +V+++G E Y+ N + LYPGG FDPLGLA DP L+
Sbjct: 242 LVHAQSILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELK 301
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM A F +QA TG+GP+
Sbjct: 302 VKELKNGRLAMFAMFGFYVQALVTGEGPV 330
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 79/149 (53%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA-------WQDAGKVELVEGS-SYLGQP- 112
++RE ELIH RWAMLG LG + EAL W AG EG YLG
Sbjct: 422 FAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLGNSN 481
Query: 113 --LPFSLTTLIWIEVIVIGYIE-YQRNAEL--DPVKRLYPGGYFDPLGLASDPGKLENLQ 167
S+ ++ +V+++G E Y+ N + LYPGG FDPLGLA DP L+
Sbjct: 482 LVHAQSILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELK 541
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM A F +QA TG+GP+
Sbjct: 542 VKELKNGRLAMFAMFGFYVQALVTGEGPV 570
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 116 SLTTLIWIEVIVIGYIE-YQRNAEL--DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIK 172
S+ ++ +V+++G E Y+ N + LYPGG FDPLGLA DP L++ E+K
Sbjct: 7 SILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELK 66
Query: 173 HARLAMVAFLIFGIQAAFTGKGPI 196
+ RLAM A F +QA TG+GP+
Sbjct: 67 NGRLAMFAMFGFYVQALVTGEGPV 90
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 78/147 (53%), Gaps = 16/147 (10%)
Query: 66 RECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP---L 113
R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 92 RALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVH 151
Query: 114 PFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLENLQLA 169
S+ ++ +V+++G +E R L V LYPGG YFDPLGLA DP L++
Sbjct: 152 AQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVK 211
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM + F +QA TGKGP+
Sbjct: 212 EIKNGRLAMFSMFGFFVQAIVTGKGPL 238
>gi|308802077|ref|XP_003078352.1| prasinophyte specific LHC (IC) [Ostreococcus tauri]
gi|116056804|emb|CAL53093.1| prasinophyte specific LHC (IC), partial [Ostreococcus tauri]
Length = 212
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 93/186 (50%), Gaps = 28/186 (15%)
Query: 32 KNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTG 91
K D+ G GE +P+ P FG ++ E E+IHGRWAMLG GA A E TG
Sbjct: 10 KADIYPEFGTYPGGGE---SPIIP----FGSEKNAEREVIHGRWAMLGVTGAWAAENGTG 62
Query: 92 VAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQRNAE 138
+ W AG + + + + P ++ L W IE++++G E R
Sbjct: 63 IPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWNVLIIEIVLVGAAEAYRTGI 122
Query: 139 LDP-------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFT 191
D V + PGG FDPLGLA + G LE L++ E+KH RL+M A+L QA T
Sbjct: 123 SDSPFDDGLTVGDVNPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWLGCIFQALAT 181
Query: 192 GKGPIS 197
+GPI+
Sbjct: 182 QEGPIA 187
>gi|63029285|gb|AAY27541.1| chloroplast prasinophyte chlorophyll a/b-binding protein Lhcp2.4
[Ostreococcus tauri]
Length = 211
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 93/186 (50%), Gaps = 28/186 (15%)
Query: 32 KNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTG 91
K D+ G GE +P+ P FG ++ E E+IHGRWAMLG GA A E TG
Sbjct: 9 KADIYPEFGTYPGGGE---SPIIP----FGSEKNAEREVIHGRWAMLGVTGAWAAENGTG 61
Query: 92 VAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQRNAE 138
+ W AG + + + + P ++ L W IE++++G E R
Sbjct: 62 IPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWNVLIIEIVLVGAAEAYRTGI 121
Query: 139 LDP-------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFT 191
D V + PGG FDPLGLA + G LE L++ E+KH RL+M A+L QA T
Sbjct: 122 SDSPFDDGLTVGDVNPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWLGCIFQALAT 180
Query: 192 GKGPIS 197
+GPI+
Sbjct: 181 QEGPIA 186
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 78/147 (53%), Gaps = 14/147 (9%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG + E L W AG EG YLG P
Sbjct: 95 KNRELEVIHSRWAMLGALGCVTPELLAKNGIKFGEAVWFKAGSQIFKEGGLDYLGNPNLV 154
Query: 116 SLTTL--IWI-EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
++ IW +VI++G +E R + + ++YPGG FDPLGLA DP L++
Sbjct: 155 HAQSILAIWASQVILMGAVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPDTFAELKVK 214
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
E+K+ RLAM + F QA TGKGPI
Sbjct: 215 ELKNGRLAMFSMFGFFTQAIVTGKGPI 241
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 78/150 (52%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG E L+ W AG EG YLG P
Sbjct: 94 KNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLI 153
Query: 116 SLTTL--IWI-EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW +V+++G IE R LDP LYPGG FDPL LA DP L
Sbjct: 154 HAQSILAIWASQVVLMGLIEGYRIGGGPLGEGLDP---LYPGGAFDPLNLAEDPEAFSEL 210
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 211 KVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G++E R LD ++YPGG FDPLGLA DP
Sbjct: 151 LVHAQSILAIWASQVVLMGFVEGYRVGGGPLGWGLD---KIYPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|15487738|gb|AAL00912.1|AF398734_1 ASCAB9-C [Argyroxiphium sandwicense]
gi|15487744|gb|AAL00915.1|AF398737_1 ASCAB9-C [Dubautia laxa]
Length = 171
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 85/148 (57%), Gaps = 12/148 (8%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLP 114
++ ELIH RWAMLG G I EA W G + L++G++ Y G+ +P
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGAL-LLDGNTLNYFGKNIP 59
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKH 173
+L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ EIK+
Sbjct: 60 INLVVAVVTEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 119
Query: 174 ARLAMVAFLIFGIQAAFTGKGPISFVAT 201
RLAM + F IQA TG+GP+ +A+
Sbjct: 120 GRLAMFSMFAFFIQAYVTGQGPVENLAS 147
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 78/149 (52%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG E L+ W AG EG YLG P
Sbjct: 89 FARNRELEVIHSRWAMLGALGCFFPEILSKNGVNFGEAVWFKAGAQIFSEGGLDYLGNPA 148
Query: 114 ---PFSLTTLIWIEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
P S+ + ++V+++G++E R + + ++YPGG FD LGLA DP +
Sbjct: 149 LVRPQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDHLGLAEDPDTFAEFK 208
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E + RLAM + L F +QA TGKGPI
Sbjct: 209 VKEFNNGRLAMFSMLGFFVQAIVTGKGPI 237
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 79/149 (53%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA-------WQDAGKVELVEGS-SYLGQP- 112
++RE ELIH RWAMLG LG + EAL W AG EG YLG
Sbjct: 165 FAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLGNSN 224
Query: 113 --LPFSLTTLIWIEVIVIGYIE-YQRNAEL--DPVKRLYPGGYFDPLGLASDPGKLENLQ 167
S+ ++ +V+++G E Y+ N + LYPGG FDPLGLA DP L+
Sbjct: 225 LVHAQSILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELK 284
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM A F +QA TG+GP+
Sbjct: 285 VKELKNGRLAMFAMFGFYVQALVTGEGPV 313
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 79/149 (53%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA-------WQDAGKVELVEGS-SYLGQP- 112
++RE ELIH RWAMLG LG + EAL W AG EG YLG
Sbjct: 405 FAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLGNSN 464
Query: 113 --LPFSLTTLIWIEVIVIGYIE-YQRNAEL--DPVKRLYPGGYFDPLGLASDPGKLENLQ 167
S+ ++ +V+++G E Y+ N + LYPGG FDPLGLA DP L+
Sbjct: 465 LVHAQSILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELK 524
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM A F +QA TG+GP+
Sbjct: 525 VKELKNGRLAMFAMFGFYVQALVTGEGPV 553
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 79/149 (53%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA-------WQDAGKVELVEGS-SYLGQP- 112
++RE ELIH RWAMLG LG + EAL W AG EG YLG
Sbjct: 645 FAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLGNSN 704
Query: 113 --LPFSLTTLIWIEVIVIGYIE-YQRNAEL--DPVKRLYPGGYFDPLGLASDPGKLENLQ 167
S+ ++ +V+++G E Y+ N + LYPGG FDPLGLA DP L+
Sbjct: 705 LVHAQSILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELK 764
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM A F +QA TG+GP+
Sbjct: 765 VKELKNGRLAMFAMFGFYVQALVTGEGPV 793
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 36/52 (69%)
Query: 145 LYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LYPGG FDPLGLA DP L++ E+K+ RLAM A F +QA TG+GP+
Sbjct: 22 LYPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPV 73
>gi|312281533|dbj|BAJ33632.1| unnamed protein product [Thellungiella halophila]
Length = 258
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 98/227 (43%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 79 GDFGFDPLGLGKDPAFLKW----------------------------------------- 97
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM LG +A +GV W +AG PFS +L+
Sbjct: 98 --YREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPRAIA--------PFSFGSLLG 147
Query: 123 IEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS 158
+++++G++E +R + P R YPGG +FDPLGLA
Sbjct: 148 TQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANYTGDQGYPGGRFFDPLGLAG 207
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKH+RLAMVA LIF +A GK P+
Sbjct: 208 KTRDGVYEPDREKLERLKLAEIKHSRLAMVAMLIFYFEAG-QGKTPL 253
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG + FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 78 PGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 124
>gi|297850008|ref|XP_002892885.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
gi|297338727|gb|EFH69144.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 100/230 (43%), Gaps = 91/230 (39%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 77 GDYGFDPLGLGKDPAFLKW----------------------------------------- 95
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQP---LPFSLTT 119
+RE ELIHGRWAM LG +A +GV W +AG QP PFS +
Sbjct: 96 --YREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGA-----------QPEAIAPFSFGS 142
Query: 120 LIWIEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLG 155
L+ +++++G++E +R + P R YPGG +FDPLG
Sbjct: 143 LLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANYTGDQGYPGGRFFDPLG 202
Query: 156 LAS---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LA D KLE L+LAEIKH+RLAM+A LIF +A GK P+
Sbjct: 203 LAGKNRDGVYEPDVEKLERLKLAEIKHSRLAMLAMLIFYFEAG-QGKTPL 251
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG Y FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 76 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 122
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 80/147 (54%), Gaps = 15/147 (10%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEALT---GV-----AWQDAGKVELVEGS-SYLGQPLPF 115
+RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 158 YRETEVIHARWAMLGALGCVTPELLSKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLI 217
Query: 116 ---SLTTLIWIEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
S+ ++ +V+++G E R + + + PGG FDPLGLA DP L++
Sbjct: 218 HAQSILAILACQVVLMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVK 277
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM + L F +QA TGKGP+
Sbjct: 278 EIKNGRLAMFSMLGFYVQAIATGKGPV 304
>gi|224054274|ref|XP_002298178.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
gi|118486723|gb|ABK95197.1| unknown [Populus trichocarpa]
gi|222845436|gb|EEE82983.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
Length = 257
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 101/227 (44%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 78 GDYGFDPLGLGKDPAFLKW----------------------------------------- 96
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM LG +A +G+ W +AG + G PFS +L+
Sbjct: 97 --YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLG 146
Query: 123 IEVIVIGYIEYQR-----NAELDPVK------------------RLYPGG-YFDPLGLAS 158
+++++G++E +R N E V+ + YPGG +FDPLG A
Sbjct: 147 TQLLLMGWVESKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFAG 206
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L++AEIKHARLAMVA LIF +A GK P+
Sbjct: 207 TLKDGVYIPDVEKLERLKVAEIKHARLAMVAMLIFYFEAG-QGKTPL 252
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG Y FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 77 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 123
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLG A DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGPADDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 81/148 (54%), Gaps = 15/148 (10%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEAL--TGVA------WQDAGKVELVEGS-SYLGQPLP 114
R+RE E+IH RWAMLG LG + E L GVA W AG EG YLG P
Sbjct: 73 RYRELEVIHARWAMLGALGCVTPELLQNNGVASFGEAVWFKAGAQIFQEGGLDYLGNPSL 132
Query: 115 F---SLTTLIWIEVIVIGYIE-YQRNA--ELDPVKRLYPGGYFDPLGLASDPGKLENLQL 168
S+ ++ ++ ++G IE Y+ N + + LYPG FDPLGLA DP L++
Sbjct: 133 IHAQSIVAVLLTQLTLMGLIEGYRVNGGPAGEGLDALYPGEAFDPLGLADDPDTFSELKV 192
Query: 169 AEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E+K+ RLAMV+ F +Q T KGPI
Sbjct: 193 KELKNGRLAMVSMFGFFVQGIVTKKGPI 220
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 80/153 (52%), Gaps = 21/153 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+RE ELIH RWAMLG LG + E L+ A W AG +G YLG
Sbjct: 76 FASYRELELIHARWAMLGALGCVTPELLSKYAGVEFGEAVWFKAGAQIFADGGLDYLGNS 135
Query: 113 L---PFSLTTLIWIEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKL 163
S+ ++ +V+++G E R +LD +L+PGG FDPLGLA DP
Sbjct: 136 SLVHAQSILAILGCQVVLMGGAEAFRVNGGPLGEDLD---KLHPGGAFDPLGLADDPDTF 192
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 193 SELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPV 225
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 80/149 (53%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPL 113
R RE E+IH RWAMLG LG + E L GV W AG EG YLG P
Sbjct: 55 FARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 114
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAELDP---VKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G++E + ++YPGG F+PLGLA DP L+
Sbjct: 115 LVHAQSILAIWACQVVLMGFVEGYGVGGGPLGEGLDKVYPGGAFEPLGLADDPDTAAELK 174
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM + F +QA TGKGPI
Sbjct: 175 VKELKNGRLAMFSMFGFFVQAIVTGKGPI 203
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 81/145 (55%), Gaps = 12/145 (8%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQ 111
++++ ELIH RWAMLG G I EA W G + L++G++ Y G+
Sbjct: 117 FEKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGK 175
Query: 112 PLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAE 170
+P +L + EVI++G EY R L +L+PGG FDPLGLA DP + L++ E
Sbjct: 176 NIPINLVLAVVAEVILVGGAEYFRITNGLGFDDKLHPGGPFDPLGLAKDPDQAALLKVKE 235
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGP 195
IK+ RLAM A L F +QA TG P
Sbjct: 236 IKNGRLAMFAMLGFFLQAYVTGDVP 260
>gi|553065|gb|AAA65447.1| chlorophyll a/b binding protein, partial [Euglena gracilis]
Length = 334
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 76/139 (54%), Gaps = 16/139 (11%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAG-KVELVEGSSYLGQP 112
L R+RE E+IH RWAMLG LG + E L G W AG ++ +G +YLG P
Sbjct: 194 LARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNP 253
Query: 113 LPFSLTTLIWI---EVIVIGYIEYQRNAEL----DPVKRLYPGGYFDPLGLASDPGKLEN 165
+++ + ++G +E R D + RLYPGG FDPLGLA+DP
Sbjct: 254 SLIHAQSVVLTFLSTLAIMGAVEGYRYGGGWPLGDDLDRLYPGGPFDPLGLANDPDAFAE 313
Query: 166 LQLAEIKHARLAMVAFLIF 184
L++ E+K+ RLAMVA L F
Sbjct: 314 LKVKEVKNGRLAMVAMLGF 332
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W G +G YLG P
Sbjct: 93 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDP---LYPGGSFDPLGLAEDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 82/154 (53%), Gaps = 22/154 (14%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT---------GVAWQDAGKVELVEGS-SYLGQ 111
+R+RE ELIH R +LG LG + E L W AG +G +YLG
Sbjct: 98 FKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGN 157
Query: 112 PLPF---SLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGK 162
P ++ + ++V+++G +E Y+ N LDP LYPG FDPLGLA DP
Sbjct: 158 PSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDP---LYPGEAFDPLGLADDPDT 214
Query: 163 LENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM A L F +QA TGKGPI
Sbjct: 215 FAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPI 248
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 79/151 (52%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+ R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 48 FAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP 107
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +V+++G +E R L V LYPGG YFDPLGLA DP
Sbjct: 108 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAE 167
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 168 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 198
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 79/149 (53%), Gaps = 16/149 (10%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP-- 112
+ R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 91 KNRALEVIHGRWAMLGALGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNL 150
Query: 113 -LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLENLQ 167
S+ ++ +++++G +E R L V LYPGG YFDPLGLA DP L+
Sbjct: 151 VHAQSILAVLGFQIVLMGLVEGFRINGLPDVGEGNDLYPGGQYFDPLGLADDPVTFAELK 210
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGP+
Sbjct: 211 VKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 79/149 (53%), Gaps = 16/149 (10%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP-- 112
+ R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 91 KNRALEVIHGRWAMLGALGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNL 150
Query: 113 -LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLENLQ 167
S+ ++ +++++G +E R L V LYPGG YFDPLGLA DP L+
Sbjct: 151 VHAQSILAVLGFQIVLMGLVEGFRINGLPDVGEGNDLYPGGQYFDPLGLADDPVTFAELK 210
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKGP+
Sbjct: 211 VKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 85/150 (56%), Gaps = 12/150 (8%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQ 111
R++ ELIH RWAMLG G I EA W G + L+EG++ Y G
Sbjct: 110 FARYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGAL-LLEGNTLNYFGN 168
Query: 112 PLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAE 170
+P +L + EV+++G EY R LD +L+PGG FDPLGLASDP + L++ E
Sbjct: 169 SIPINLAVAVVAEVVLVGGAEYYRIINGLDLEGKLHPGGPFDPLGLASDPDQAAPLKVKE 228
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
IK+ RLAM L F IQA TG+GP+ +A
Sbjct: 229 IKNGRLAMFPMLGFFIQAYVTGEGPVENLA 258
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 79/151 (52%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
R R E+IHGRWAMLG LG I E L W AG +G YLG P
Sbjct: 90 FARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNP 149
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +V+++G +E R L V LYPGG YFDPLGLA DP
Sbjct: 150 NLVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGDGNDLYPGGQYFDPLGLADDPVTFAE 209
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 83/150 (55%), Gaps = 15/150 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL----TGVA---WQDAGKVELVEGS-SYLGQP- 112
+R+RE ELIH RWAMLG LG + E L T +A W AG EG YLG P
Sbjct: 95 FKRYRELELIHARWAMLGALGCVTPELLAKNGTPIAEPVWFKAGAQIFQEGGLDYLGNPG 154
Query: 113 --LPFSLTTLIWIEVIVIGYIEYQR---NAELDPVKRLYPGG-YFDPLGLASDPGKLENL 166
S+ + +VI++G IE R + + +L+PGG +FDPL LA DP L
Sbjct: 155 LVHAQSILATLACQVILMGAIEGFRVNGGPAGEGLDKLHPGGPWFDPLALAEDPDAFAEL 214
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM + F +QA TG+GPI
Sbjct: 215 KVKEIKNGRLAMFSMFGFFVQAIVTGQGPI 244
>gi|145344454|ref|XP_001416747.1| prasinophyte light harvesting complex, chlorophyll binding
[Ostreococcus lucimarinus CCE9901]
gi|145345055|ref|XP_001417039.1| prasinophyte light harvesting complex, chlorophyll binding
[Ostreococcus lucimarinus CCE9901]
gi|145348539|ref|XP_001418704.1| prasinophyte light harvesting complex, chlorophyll binding
[Ostreococcus lucimarinus CCE9901]
gi|145354851|ref|XP_001421688.1| prasinophyte light harvesting complex, chlorophyll binding
[Ostreococcus lucimarinus CCE9901]
gi|144576973|gb|ABO95040.1| prasinophyte light harvesting complex, chlorophyll binding
[Ostreococcus lucimarinus CCE9901]
gi|144577265|gb|ABO95332.1| prasinophyte light harvesting complex, chlorophyll binding
[Ostreococcus lucimarinus CCE9901]
gi|144578934|gb|ABO96997.1| prasinophyte light harvesting complex, chlorophyll binding
[Ostreococcus lucimarinus CCE9901]
gi|144581926|gb|ABO99981.1| prasinophyte light harvesting complex, chlorophyll binding
[Ostreococcus lucimarinus CCE9901]
Length = 233
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 93/186 (50%), Gaps = 28/186 (15%)
Query: 32 KNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTG 91
K D+ G GE +P+ P FG ++ E E+IHGRWAMLG GA A E TG
Sbjct: 31 KADIYPEFGTYPGGGE---SPIIP----FGDEKNAEREVIHGRWAMLGVTGAWAAENGTG 83
Query: 92 VAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQRNAE 138
+ W AG + + + + P ++ L W IE++++G E R
Sbjct: 84 IPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWNVLIIEIVLVGAAEAYRTGI 143
Query: 139 LDP-------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFT 191
D V + PGG FDPLGLA + G LE L++ E+KH RL+M A+L QA T
Sbjct: 144 SDSPFDDGLTVGDVNPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWLGCIFQALAT 202
Query: 192 GKGPIS 197
+GPI+
Sbjct: 203 QEGPIA 208
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 80/147 (54%), Gaps = 14/147 (9%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG + E L GV W AG EG YLG P
Sbjct: 93 KNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLV 152
Query: 116 SLTTL--IWI-EVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
++ IW +V+++G IE R + + LYPGG FDPLGLA DP L++
Sbjct: 153 HAQSILAIWASQVVLMGLIEGYRIGGGPLGEGLDSLYPGGAFDPLGLADDPEAFAELKVK 212
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
E+K+ RLAM + F +QA TGKGP+
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPV 239
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 79/151 (52%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
R R E+IHGRWAMLG LG I E L W AG +G YLG P
Sbjct: 90 FARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNP 149
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +V+++G +E R L V LYPGG YFDPLGLA DP
Sbjct: 150 NLVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGDGNDLYPGGQYFDPLGLADDPVTFAE 209
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQ 111
+++ ELIH RWAMLG G I EA W G + L++G++ Y G
Sbjct: 110 FSKYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGN 168
Query: 112 PLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAE 170
+P +L + EV+++G EY R LD +L+PGG FDPLGLASDP + L++ E
Sbjct: 169 SIPINLIVAVAAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKE 228
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPI 196
IK+ RLAM + L F IQA TG+GP+
Sbjct: 229 IKNGRLAMFSMLGFFIQAYVTGEGPV 254
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ R+ E+IH RW MLG LG + E A GV W AG EG YLG P
Sbjct: 92 FAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPS 151
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 152 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSFDPLGLADDPEAFA 208
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 209 ELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
>gi|154357500|gb|ABS78774.1| At4g10340-like protein [Arabidopsis halleri subsp. halleri]
Length = 149
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 87/148 (58%), Gaps = 12/148 (8%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLP 114
++ ELIH RWAMLG G I EAL W G + L++G++ Y G+ +P
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGAKCGPEAVWFKTGAL-LLDGNTLNYFGKNIP 59
Query: 115 FSLTTLIWIEVIVIGYIEYQR-NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKH 173
+L + EV+++G EY R ELD +L+PGG FDPLGLA DP + L++ EIK+
Sbjct: 60 INLVLAVVAEVVLLGGAEYYRITNELDFEDKLHPGGPFDPLGLAKDPDQGALLKVKEIKN 119
Query: 174 ARLAMVAFLIFGIQAAFTGKGPISFVAT 201
RLAM A L F IQA TG+GP+ +A
Sbjct: 120 GRLAMFAMLGFFIQAYVTGEGPVENLAK 147
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQ 111
+++ ELIH RWAMLG G I EA W G + L++G++ Y G
Sbjct: 110 FSKYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGN 168
Query: 112 PLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAE 170
+P +L + EV+++G EY R LD +L+PGG FDPLGLASDP + L++ E
Sbjct: 169 SIPINLIVAVAAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKE 228
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPI 196
IK+ RLAM + L F IQA TG+GP+
Sbjct: 229 IKNGRLAMFSMLGFFIQAYVTGEGPV 254
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQ 111
+++ ELIH RWAMLG G I EA W G + L++G++ Y G
Sbjct: 49 FSKYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGN 107
Query: 112 PLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAE 170
+P +L + EV+++G EY R LD +L+PGG FDPLGLASDP + L++ E
Sbjct: 108 SIPINLIVAVAAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKE 167
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPI 196
IK+ RLAM + L F IQA TG+GP+
Sbjct: 168 IKNGRLAMFSMLGFFIQAYVTGEGPV 193
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQ 111
+++ ELIH RWAMLG G I EA W G + L++G++ Y G
Sbjct: 28 FSKYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGN 86
Query: 112 PLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAE 170
+P +L + EV+++G EY R LD +L+PGG FDPLGLASDP + L++ E
Sbjct: 87 SIPINLIVAVAAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKE 146
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPI 196
IK+ RLAM + L F IQA TG+GP+
Sbjct: 147 IKNGRLAMFSMLGFFIQAYVTGEGPV 172
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 86/151 (56%), Gaps = 12/151 (7%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQ 111
+++ ELIH RWAMLG G + EA W G + L++G++ Y G+
Sbjct: 112 FAKYQAYELIHARWAMLGAAGFVIPEAFNKFGADCGPEAVWFKTGAL-LLDGNTLNYFGK 170
Query: 112 PLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAE 170
+P +L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ E
Sbjct: 171 NIPINLVVAVVAEVVLLGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKE 230
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
IK+ RLAM A L F IQA TGKGP+ +A
Sbjct: 231 IKNGRLAMFAMLGFFIQAYVTGKGPVENLAA 261
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 80/149 (53%), Gaps = 14/149 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ W AG EG YLG P
Sbjct: 45 FAKNRELEVIHSRWAMLGALGCVFPEILSKNGIKFGEAVWFKAGAQIFSEGGLDYLGNPN 104
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDPGKLENLQ 167
++ IW +V+++G+IE R + + +YPGG FDPLGLA DP L+
Sbjct: 105 LVHAQSILAIWACQVVLMGFIEGYRVGGGPLGEGLDIIYPGGAFDPLGLADDPDTAAELK 164
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ E+K+ RLAM + F +QA TGKGP+
Sbjct: 165 VKELKNGRLAMFSMFGFFVQAIVTGKGPV 193
>gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 194
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 20 FSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 79
Query: 114 PF---SLTTLIWIEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
S+ T+ +VI++G +E R A +DP LYPGG FDPLGLA P
Sbjct: 80 LVHAQSILTVWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLAEIPEAFA 136
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGPI +A
Sbjct: 137 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 172
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 83/154 (53%), Gaps = 20/154 (12%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG E A GV W AG EG YLG P
Sbjct: 93 KNRELEVIHCRWAMLGALGCDFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLV 152
Query: 116 SLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP L
Sbjct: 153 HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFAEL 209
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 KVKEIKNGRLAMFSTFGFFVQAIVTGKGPLENLA 243
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 82/156 (52%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 89 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 148
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP LYPGG FDPLGLA DP
Sbjct: 149 LIHAQSILAIWACQVVLMGAVEGYRIAGGPLGKVTDP---LYPGGSFDPLGLADDPEAFA 205
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ R AM + F +QA TGKGP+ +A
Sbjct: 206 ELKVKEIKNGRSAMFSMFGFFVQAIVTGKGPLENLA 241
>gi|449446427|ref|XP_004140973.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Cucumis sativus]
gi|449497079|ref|XP_004160305.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Cucumis sativus]
Length = 255
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 101/227 (44%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 76 GDYGFDPLGLGKDPAFLKW----------------------------------------- 94
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM +G +A +G+ W +AG G PFS +L+
Sbjct: 95 --YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLLG 144
Query: 123 IEVIVIGYIEYQR-----NAELDPV------------------KRLYPGG-YFDPLGLA- 157
+++++G++E +R N E V ++ YPGG +FDPLG A
Sbjct: 145 TQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAG 204
Query: 158 --------SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+D KLE L+LAEIKHAR+AM+A LIF +A GK P+
Sbjct: 205 TLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFYFEAG-QGKTPL 250
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG Y FDPLGL DP L+ + AE+ H R AM A + + A++G
Sbjct: 75 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 121
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+ +G +E R A +DP LYPGG DPLGLA DP
Sbjct: 151 LIHAQSILAIWGCQVVFMGAVEGYRVAGGPLGEVVDP---LYPGGSLDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM++ F +QA TGKGP+
Sbjct: 208 ELKVKEIKNGRLAMLSMFGFFVQAIVTGKGPL 239
>gi|356525886|ref|XP_003531552.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
[Glycine max]
Length = 261
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 97/227 (42%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 82 GDYGFDPLGLGKDPAFLKW----------------------------------------- 100
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM LG +A +GV W +AG PFS TL+
Sbjct: 101 --YREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADP--------NAIAPFSFGTLLG 150
Query: 123 IEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS 158
++I++G++E +R + P R YPGG +FDPL LA
Sbjct: 151 TQLILMGWVESKRWVDFFNPDSQSVEWATPWSRTSENFANATGEQGYPGGKFFDPLSLAG 210
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKHAR+AM+A LIF +A GK P+
Sbjct: 211 TIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAG-QGKTPL 256
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG Y FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 81 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 127
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 82/156 (52%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 97 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 156
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPL LA DP
Sbjct: 157 LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLRLADDPDAFA 213
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 214 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 249
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 78/149 (52%), Gaps = 16/149 (10%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP-- 112
R R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 93 RNRALEVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNPNL 152
Query: 113 -LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLENLQ 167
S+ ++ +VI++G +E R L V LYPGG YFDPLGLA DP L+
Sbjct: 153 VHAQSILAVLGFQVILMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELK 212
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ EIK+ RLAM + F +QA TGKG +
Sbjct: 213 VKEIKNGRLAMFSMFRFFVQAIVTGKGSL 241
>gi|226501904|ref|NP_001141632.1| uncharacterized protein LOC100273752 [Zea mays]
gi|226531392|ref|NP_001148406.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|194705338|gb|ACF86753.1| unknown [Zea mays]
gi|195619056|gb|ACG31358.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|414584819|tpg|DAA35390.1| TPA: chlorophyll a-b binding protein CP24 isoform 1 [Zea mays]
gi|414584820|tpg|DAA35391.1| TPA: chlorophyll a-b binding protein CP24 isoform 2 [Zea mays]
Length = 253
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 99/227 (43%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 74 GDFGFDPLGLGKDPAFLKW----------------------------------------- 92
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM LG +A +G+ W +AG G PFS +L+
Sbjct: 93 --YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLLG 142
Query: 123 IEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS 158
+++++G++E +R + P R YPGG +FDPLGLA
Sbjct: 143 TQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANFTGDQGYPGGKFFDPLGLAG 202
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKHAR+AM+A L+F +A GK P+
Sbjct: 203 TVKDGVYVPDVEKLERLKLAEIKHARIAMLAMLVFYFEAG-QGKTPL 248
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG + FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 73 PGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 119
>gi|255585659|ref|XP_002533515.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526625|gb|EEF28871.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 256
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 98/227 (43%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 77 GDYGFDPLGLGKDPAFLKW----------------------------------------- 95
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM +G +A +G+ W +AG G PFS +L+
Sbjct: 96 --YREAELIHGRWAMAAVIGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLLG 145
Query: 123 IEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS 158
++I++G++E +R + P R YPGG +FDPLG A
Sbjct: 146 TQLILMGWVESKRWVDFFNPDSQSVEWATPWSRTSENFANATGEQGYPGGKFFDPLGFAG 205
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L++AEIKHARLAM+A LIF +A GK P+
Sbjct: 206 TLKDGVYIPDVEKLERLKVAEIKHARLAMLAMLIFYFEAG-QGKTPL 251
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG Y FDPLGL DP L+ + AE+ H R AM A + + A++G
Sbjct: 76 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVIGIFVGQAWSG 122
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 83/150 (55%), Gaps = 10/150 (6%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGS-SYLGQP 112
+++ ELIH RWAMLG G I EA W G + L G+ SY G
Sbjct: 129 FDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGAS 188
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
+P +L + EV+++G EY R L+ +L+PGG FDPLGLA DP + L++ EI
Sbjct: 189 IPINLIAAVVAEVVLVGGAEYYRATNGLNFDDKLHPGGPFDPLGLAKDPDQFALLKVKEI 248
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
K+ RLAM + L F +QA TG+GP+ +A
Sbjct: 249 KNGRLAMFSMLGFFLQAYVTGEGPVENLAA 278
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
R E E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 89 FARNPELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 148
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 149 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 205
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 206 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 241
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 78/151 (51%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+ R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 94 FAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP 153
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +V+++G +E R L V LYPG YFDPLGLA DP
Sbjct: 154 NLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNNLYPGDQYFDPLGLADDPATFAE 213
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 214 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 244
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 83/154 (53%), Gaps = 20/154 (12%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG + E A GV W AG +G YLG P
Sbjct: 94 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLV 153
Query: 116 SLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENL 166
+L IW +V+++G +E R A +DP LYPGG FDPLGLA P L
Sbjct: 154 HAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDP---LYPGGSFDPLGLAERPQAFAEL 210
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 211 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLA 244
>gi|110377772|gb|ABG73416.1| chloroplast pigment-binding protein CP24 [Nicotiana tabacum]
Length = 257
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 100/227 (44%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 78 GDYGFDPLGLGKDPAFLKW----------------------------------------- 96
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM LG +A +G+ W +AG G PFS +L+
Sbjct: 97 --YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLLG 146
Query: 123 IEVIVIGYIEYQR-----NAELDPV------------------KRLYPGG-YFDPLGLAS 158
+++++G++E +R N E V ++ YPGG +FDPL LA
Sbjct: 147 TQLLLMGWVESKRWVDFFNPESQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLSLAG 206
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L++AEIKHARLAM+A LIF +A GK P+
Sbjct: 207 TLQDGVYIPDTEKLERLKVAEIKHARLAMLAMLIFYFEAG-QGKTPL 252
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG Y FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 77 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 123
>gi|15487754|gb|AAL00920.1|AF398742_1 ASCAB9 [Centromadia pungens]
Length = 171
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 85/148 (57%), Gaps = 12/148 (8%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLP 114
++ ELIH RWAMLG G I EA W G + L++G++ Y G+ +P
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGAL-LLDGNTLNYFGKNIP 59
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKH 173
+L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ EIK+
Sbjct: 60 INLVVAVVAEVVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 119
Query: 174 ARLAMVAFLIFGIQAAFTGKGPISFVAT 201
RLAM + F IQA TG+GP+ +A+
Sbjct: 120 GRLAMFSMFAFFIQAYVTGQGPVENLAS 147
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 101/211 (47%), Gaps = 55/211 (26%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD G+DP GLGK E N AK
Sbjct: 89 VAGDYGYDPFGLGKKPE-----------NFAK---------------------------- 109
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLG 110
++ ELIH RWAMLG G I EAL W G + L++G++ Y G
Sbjct: 110 ----YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFG 164
Query: 111 QPLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
+ +P +L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++
Sbjct: 165 KNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVK 224
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
EIK+ RLAM A L F IQA TG+GP+ +A
Sbjct: 225 EIKNGRLAMFAMLGFFIQAYVTGEGPVENLA 255
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 84/153 (54%), Gaps = 14/153 (9%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 58 FAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 117
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNA--ELDPVKR-LYPGGYFDPLGLASDPGKLENLQ 167
++ IW +VI++G +E R A L V+ LYPGG FDPLGLA DP L+
Sbjct: 118 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVEDPLYPGGSFDPLGLADDPEAFAELK 177
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
+ EIK+ RLAM + F + A TGKGP+ +A
Sbjct: 178 VKEIKNGRLAMFSMFGFFVXAIVTGKGPLENLA 210
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 79/151 (52%), Gaps = 16/151 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP 112
+ R E+IHGRWAMLG LG I E L W AG +G YLG P
Sbjct: 89 FAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNP 148
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLEN 165
S+ ++ +V+++G +E R L V LYPGG YFDPLGLA DP
Sbjct: 149 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAE 208
Query: 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++ EIK+ RLAM + F +QA TGKGP+
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
>gi|357445799|ref|XP_003593177.1| Chloroplast chlorophyll a/b-binding protein CP24 [Medicago
truncatula]
gi|355482225|gb|AES63428.1| Chloroplast chlorophyll a/b-binding protein CP24 [Medicago
truncatula]
Length = 261
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 97/227 (42%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 82 GDFGFDPLGLGKDPAFLKW----------------------------------------- 100
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM LG +A +GV W +AG PFS TL+
Sbjct: 101 --YREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADP--------NAIAPFSFGTLLG 150
Query: 123 IEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS 158
++I++G++E +R + P + YPGG +FDPL LA
Sbjct: 151 TQLILMGWVESKRWVDFFNPDSQSIEWATPWSKTAENFANATGEQGYPGGKFFDPLSLAG 210
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKHARLAM+A LIF +A GK P+
Sbjct: 211 TIENGVYIPDTEKLERLKLAEIKHARLAMLAMLIFYFEAG-QGKTPL 256
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG + FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 81 PGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 127
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 101/211 (47%), Gaps = 55/211 (26%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD G+DP GLGK E N AK
Sbjct: 89 VAGDYGYDPFGLGKKPE-----------NFAK---------------------------- 109
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLG 110
++ ELIH RWAMLG G I EAL W G + L++G++ Y G
Sbjct: 110 ----YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFG 164
Query: 111 QPLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
+ +P +L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++
Sbjct: 165 KNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVK 224
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
EIK+ RLAM A L F IQA TG+GP+ +A
Sbjct: 225 EIKNGRLAMFAMLGFFIQAYVTGEGPVENLA 255
>gi|145079866|tpg|DAA05944.1| TPA_inf: chloroplast light-harvesting complex protein precursor
Lhcp2.2 [Micromonas sp. CCMP490]
Length = 213
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 87/174 (50%), Gaps = 27/174 (15%)
Query: 28 QNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE 87
+ K D+ G GE +P+ P FG ++ E E+IHGRWAMLG GA A E
Sbjct: 44 STMIKADIYPEFGTYPGGGE---SPIIP----FGSEKNAEREVIHGRWAMLGVTGAWAAE 96
Query: 88 ALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQ 134
TG+ W AG + + + + P ++ L W IEV+++G E
Sbjct: 97 NGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWAVLAIEVVLVGLAEAY 156
Query: 135 RNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFL 182
R DP V + PGG FDPLGLA + G LE L++ E+KH RL+M A+L
Sbjct: 157 RTGLSDPAFDELTVGDVSPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWL 209
>gi|115458738|ref|NP_001052969.1| Os04g0457000 [Oryza sativa Japonica Group]
gi|21740892|emb|CAD40888.1| OSJNBa0036B21.6 [Oryza sativa Japonica Group]
gi|113564540|dbj|BAF14883.1| Os04g0457000 [Oryza sativa Japonica Group]
gi|125548549|gb|EAY94371.1| hypothetical protein OsI_16135 [Oryza sativa Indica Group]
gi|125548552|gb|EAY94374.1| hypothetical protein OsI_16138 [Oryza sativa Indica Group]
gi|215740813|dbj|BAG96969.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 252
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 99/230 (43%), Gaps = 91/230 (39%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 73 GDFGFDPLGLGKDPAFLKW----------------------------------------- 91
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQP---LPFSLTT 119
+RE ELIHGRWAM LG +A +GV W +AG QP PFS +
Sbjct: 92 --YREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAG-----------AQPEAIAPFSFGS 138
Query: 120 LIWIEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLG 155
L+ +++++G++E +R + P R YPGG +FDPLG
Sbjct: 139 LLGTQLLLMGWVESKRWVDFFNPDSQAVEWATPWSRTAENFSNATGEQGYPGGKFFDPLG 198
Query: 156 LAS---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L D KL+ L+LAEIKHARLAM+A LIF +A GK P+
Sbjct: 199 LGGETRDGVYIPDTDKLDRLKLAEIKHARLAMLAMLIFYFEAG-QGKTPL 247
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG + FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 72 PGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 118
>gi|308799535|ref|XP_003074548.1| prasinophyte specific LHC (IC) [Ostreococcus tauri]
gi|63029287|gb|AAY27542.1| chloroplast prasinophyte chlorophyll a/b-binding protein Lhcp1
[Ostreococcus tauri]
gi|116000719|emb|CAL50399.1| prasinophyte specific LHC (IC), partial [Ostreococcus tauri]
Length = 210
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 95/188 (50%), Gaps = 27/188 (14%)
Query: 29 NLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEA 88
+LA D+ G GE +P+ P FG ++ E E+IHGRWAMLG GA A E
Sbjct: 6 SLAPPDLYPEFGTYPGGGE---SPVIP----FGSEKNAEREIIHGRWAMLGVTGAWAAEN 58
Query: 89 LTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQR 135
TG+ W AG + + + + P ++ L W IE+ ++G E R
Sbjct: 59 GTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPAGSGYPNFWAVLAIEIFLVGSAECYR 118
Query: 136 NAEL-DPVKRL-----YPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAA 189
+P L PGG FDPLG A + G LE L++ E+KH+RLAM A+L +QA
Sbjct: 119 TGLFENPFPELTQGDVTPGGRFDPLGFA-EAGDLEELKIKELKHSRLAMFAWLGCIMQAL 177
Query: 190 FTGKGPIS 197
T +GPI+
Sbjct: 178 ATQEGPIA 185
>gi|424513507|emb|CCO66129.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Bathycoccus prasinos]
Length = 235
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 98/204 (48%), Gaps = 28/204 (13%)
Query: 14 KPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHG 73
K T+ DF + K D+ G GE +P+ P FG ++ E E+IHG
Sbjct: 15 KATKVQIGDFSKSISKVVKADIYPEFGTYPGGGE---SPIIP----FGNEKNAEREIIHG 67
Query: 74 RWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW-- 122
RWA LG GA A E TG+ W AG + + + + P ++ L W
Sbjct: 68 RWAQLGVTGAWAAENGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWNV 127
Query: 123 --IEVIVIGYIE-YQRNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKH 173
IE I++G E Y+ +P + PGG FDPLGLA + G LE L++ E+KH
Sbjct: 128 LIIETILVGGAEAYRTGLAANPFDDGLVAGDVSPGGRFDPLGLA-ESGDLEELKIKELKH 186
Query: 174 ARLAMVAFLIFGIQAAFTGKGPIS 197
RL+M A+L QA T +GPI+
Sbjct: 187 CRLSMFAWLGCIFQALATQEGPIA 210
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 101/211 (47%), Gaps = 55/211 (26%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD G+DP GLGK E N AK
Sbjct: 89 VAGDYGYDPFGLGKKPE-----------NFAK---------------------------- 109
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLG 110
++ ELIH RWAMLG G I EAL W G + L++G++ Y G
Sbjct: 110 ----YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFG 164
Query: 111 QPLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLA 169
+ +P +L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++
Sbjct: 165 KNIPINLVLAVVAEVVLLGGSEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVK 224
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
EIK+ RLAM A L F IQA TG+GP+ +A
Sbjct: 225 EIKNGRLAMFAMLGFFIQAYVTGEGPVENLA 255
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 85/156 (54%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLG-QP 112
+ RE E+IH RWAMLG LG + E A GV +W AG EG YLG Q
Sbjct: 71 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQS 130
Query: 113 LPFSLTTL-IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
L + + L IW +VI++G +E R A DP+ YPGG FDPL LA DP
Sbjct: 131 LIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLALADDPEAFA 187
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 188 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 223
>gi|162461878|ref|NP_001105427.1| light harvesting chlorophyll a /b binding protein [Zea mays]
gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b binding protein [Zea mays]
Length = 265
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGVAWQDA-----GKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV + +A G EG YLG P
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVGFKAGSQIFSEGGLDYLGNPS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 151 LIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKELKKGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|50313237|gb|AAT74560.1| Lhcb6 protein [Brassica rapa subsp. pekinensis]
Length = 254
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 98/227 (43%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 75 GDFGFDPLGLGKDPAFLKW----------------------------------------- 93
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM LG +A +GV W +AG PFS +L+
Sbjct: 94 --YREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPRAIA--------PFSFGSLLG 143
Query: 123 IEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS 158
+++++G++E +R + P R YPGG +FDPLGLA
Sbjct: 144 TQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANYTGDQGYPGGRFFDPLGLAG 203
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKH+RLAM+A LIF +A GK P+
Sbjct: 204 KTRDGVYEPDREKLERLKLAEIKHSRLAMLAMLIFYFEAG-QGKTPL 249
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG + FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 74 PGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 120
>gi|156046248|gb|ABU42592.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 85/148 (57%), Gaps = 12/148 (8%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLP 114
++ ELIH RWAMLG G I EA W G + L++G++ Y G+ +P
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGAL-LLDGNTLNYFGKNIP 59
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKH 173
+L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ EIK+
Sbjct: 60 INLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 119
Query: 174 ARLAMVAFLIFGIQAAFTGKGPISFVAT 201
RLAM + F IQA TG+GP+ +A+
Sbjct: 120 GRLAMFSMFAFFIQAYVTGQGPVESLAS 147
>gi|15487716|gb|AAL00901.1|AF398723_1 ASCAB9-A [Argyroxiphium caliginis]
gi|15487720|gb|AAL00903.1|AF398725_1 ASCAB9-A [Dubautia laevigata]
gi|15487726|gb|AAL00906.1|AF398728_1 ASCAB9-A [Dubautia plantaginea]
gi|15487730|gb|AAL00908.1|AF398730_1 ASCAB9-A [Dubautia sherffiana]
gi|15487732|gb|AAL00909.1|AF398731_1 ASCAB9-A [Wilkesia gymnoxiphium]
gi|15487734|gb|AAL00910.1|AF398732_1 ASCAB9-B [Argyroxiphium caliginis]
gi|15487736|gb|AAL00911.1|AF398733_1 ASCAB9-B [Argyroxiphium sandwicense]
gi|15487740|gb|AAL00913.1|AF398735_1 ASCAB9-B [Dubautia laevigata]
gi|15487742|gb|AAL00914.1|AF398736_1 ASCAB9-C [Dubautia latifolia]
gi|15487746|gb|AAL00916.1|AF398738_1 ASCAB9-B [Dubautia plantaginea]
gi|15487748|gb|AAL00917.1|AF398739_1 ASCAB9-C [Dubautia scabra]
gi|15487750|gb|AAL00918.1|AF398740_1 ASCAB9-B [Wilkesia gymnoxiphium]
gi|15487758|gb|AAL00922.1|AF398744_1 ASCAB9 [Harmonia nutans]
gi|15487760|gb|AAL00923.1|AF398745_1 ASCAB9 [Osmadenia tenella]
gi|15487764|gb|AAL00925.1|AF398747_1 ASCAB9 [Anisocarpus scabridus]
gi|156046244|gb|ABU42590.1| ASCAB9 [Dubautia arborea]
gi|156046246|gb|ABU42591.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 85/148 (57%), Gaps = 12/148 (8%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLP 114
++ ELIH RWAMLG G I EA W G + L++G++ Y G+ +P
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGAL-LLDGNTLNYFGKNIP 59
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKH 173
+L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ EIK+
Sbjct: 60 INLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 119
Query: 174 ARLAMVAFLIFGIQAAFTGKGPISFVAT 201
RLAM + F IQA TG+GP+ +A+
Sbjct: 120 GRLAMFSMFAFFIQAYVTGQGPVENLAS 147
>gi|15487752|gb|AAL00919.1|AF398741_1 ASCAB9-C [Wilkesia gymnoxiphium]
Length = 171
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 85/148 (57%), Gaps = 12/148 (8%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLP 114
++ ELIH RWAMLG G I EA W G + L++G++ Y G+ +P
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGAL-LLDGNTLNYFGKNIP 59
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKH 173
+L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ EIK+
Sbjct: 60 INLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 119
Query: 174 ARLAMVAFLIFGIQAAFTGKGPISFVAT 201
RLAM + F IQA TG+GP+ +A+
Sbjct: 120 GRLAMFSMFAFFIQAYVTGQGPVENLAS 147
>gi|326487444|dbj|BAJ89706.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493456|dbj|BAJ85189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326529461|dbj|BAK04677.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 99/227 (43%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 76 GDFGFDPLGLGKDPAFLKW----------------------------------------- 94
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM LG +A +GV W +AG + G PFS +L+
Sbjct: 95 --YREAELIHGRWAMAAVLGIFIGQAYSGVPWFEAG--------AQPGAVAPFSFGSLLG 144
Query: 123 IEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS 158
+++++G++E +R + P R YPGG +FDPLGL
Sbjct: 145 TQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANFTGEQGYPGGKFFDPLGLGG 204
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L++AEIKH+RLAM+A LIF +A GK P+
Sbjct: 205 ETKDGIYIPDTEKLERLKVAEIKHSRLAMLAMLIFYFEAG-QGKTPL 250
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG + FDPLGL DP L+ + AE+ H R AM A L I A++G
Sbjct: 75 PGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQAYSG 121
>gi|270308992|dbj|BAI52949.1| light-harvesting complex II protein [Citrullus lanatus subsp.
vulgaris]
Length = 255
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 101/227 (44%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 76 GDYGFDPLGLGKDPAFLKW----------------------------------------- 94
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM +G +A +G+ W +AG + G PFS +L+
Sbjct: 95 --YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLG 144
Query: 123 IEVIVIGYIEYQR-----NAELDPV------------------KRLYPGG-YFDPLGLAS 158
+++++G++E +R N E V ++ YPGG +FDPLG A
Sbjct: 145 TQLLLMGWVESKRWVDFFNPESQAVEWATPWLRTAENFANTTGEQGYPGGKFFDPLGFAG 204
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKHAR+AM+A LIF +A GK P+
Sbjct: 205 TIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAG-QGKTPL 250
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG Y FDPLGL DP L+ + AE+ H R AM A + + A++G
Sbjct: 75 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 121
>gi|19577|emb|CAA49272.1| chlorophyll a/b/c binding protein precursor [Mantoniella squamata]
Length = 231
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 92/189 (48%), Gaps = 27/189 (14%)
Query: 28 QNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE 87
+ K D+ G GE +P+ P FG ++ E E+ HGRWAMLG GA A E
Sbjct: 26 STVVKADIYPEFGTYPGGGE---SPIIP----FGSEKNAEREVSHGRWAMLGVTGAWAAE 78
Query: 88 ALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQ 134
TG+ W AG + + + + P ++ L W IEV+++G E
Sbjct: 79 NGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWAVLAIEVVLVGLAEAY 138
Query: 135 RNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 188
R D V + PGG FDPLGLA + G LE L++ E+KH RL+M A+L Q
Sbjct: 139 RTGLTDSPFEELTVGDVSPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWLGCIFQG 197
Query: 189 AFTGKGPIS 197
T +GPI+
Sbjct: 198 LATQEGPIA 206
>gi|375152108|gb|AFA36512.1| chloroplast a/b binding protein cab-PhE11, partial [Lolium perenne]
Length = 160
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 84/164 (51%), Gaps = 42/164 (25%)
Query: 66 RECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEV 125
RE ELIHGRWAM LG +A +GVAW +AG + G PFS +L+ ++
Sbjct: 1 REAELIHGRWAMAAVLGIFVGQAYSGVAWFEAG--------AQPGAVAPFSFGSLLGTQL 52
Query: 126 IVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS--- 158
+++G++E +R + P R YPGG +FDPLGL
Sbjct: 53 LLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLGLGGDTK 112
Query: 159 ------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KL+ L+LAEIKHARLAM+A LIF +A GK P+
Sbjct: 113 DGVYIPDADKLDRLKLAEIKHARLAMLAMLIFYFEAG-QGKTPL 155
>gi|255629343|gb|ACU15016.1| unknown [Glycine max]
Length = 247
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 91/215 (42%), Gaps = 84/215 (39%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 82 GDYGFDPLGLGKDPAFLKW----------------------------------------- 100
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM LG +A +GV W +AG PFS TL+
Sbjct: 101 --YREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADP--------NAIAPFSFGTLLG 150
Query: 123 IEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS 158
++I++G++E +R + P R YPGG +FDPL LA
Sbjct: 151 TQLILMGWVESKRWVDFFNPDSQSVEWATPWSRTSENFANATGEQGYPGGKFFDPLSLAG 210
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIF 184
D KLE L+LAEIKHAR+AM+A LIF
Sbjct: 211 TIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 245
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG Y FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 81 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 127
>gi|116309995|emb|CAH67022.1| H0523F07.10 [Oryza sativa Indica Group]
Length = 252
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 99/230 (43%), Gaps = 91/230 (39%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 73 GDFGFDPLGLGKDPAFLKW----------------------------------------- 91
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQP---LPFSLTT 119
+RE ELIHGRWAM LG +A +GV W +AG QP PFS +
Sbjct: 92 --YREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAG-----------AQPEAIAPFSSGS 138
Query: 120 LIWIEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLG 155
L+ +++++G++E +R + P R YPGG +FDPLG
Sbjct: 139 LLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFSNATGEQGYPGGKFFDPLG 198
Query: 156 LAS---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L D KL+ L+LAEIKHARLAM+A LIF +A GK P+
Sbjct: 199 LGGETRDGVYIPDTDKLDRLKLAEIKHARLAMLAMLIFYFEAG-QGKTPL 247
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG + FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 72 PGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 118
>gi|145079190|tpg|DAA05903.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm11 [Acetabularia acetabulum]
Length = 224
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 79/149 (53%), Gaps = 21/149 (14%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT---GVA-----WQDAGKVELVEGS-SYLGQP 112
+R+RE ELIH RWAMLG LG + E L+ GV+ W AG EG YLG
Sbjct: 79 FRRYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNS 138
Query: 113 ---LPFSLTTLIWIEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKL 163
S+ ++ +V+++G IE R LDP LYPG FDPLGLA DP
Sbjct: 139 NLVHAQSILAILGCQVLLMGAIEAYRVNGGPLGEGLDP---LYPGDKFDPLGLADDPDTF 195
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
L++ EIK+ RLAM + F +QA TG
Sbjct: 196 AELKIKEIKNGRLAMFSMFGFYVQAVVTG 224
>gi|115834|sp|P27525.1|CB4B_SOLLC RecName: Full=Chlorophyll a-b binding protein CP24 10B,
chloroplastic; Short=CAB-10B; Short=LHCP; Flags:
Precursor
gi|170400|gb|AAA34146.1| chlorophyll b-binding protein [Solanum lycopersicum]
Length = 256
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 98/227 (43%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 77 GDFGFDPLGLGKDPAFLKW----------------------------------------- 95
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM LG +A +G+ W +AG G PFS +L+
Sbjct: 96 --YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLLG 145
Query: 123 IEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS 158
+++++G++E +R + P + YPGG +FDPL LA
Sbjct: 146 TQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAG 205
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKH+RLAM+A LIF +A GK P+
Sbjct: 206 TLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEAG-QGKTPL 251
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG + FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 76 PGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 122
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQ 111
+++ ELIH RWAMLG G I EA W G + L++G++ Y G
Sbjct: 113 FTKYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGN 171
Query: 112 PLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAE 170
+P +L + EV+++G EY R LD +L+PGG FDPLGLASDP + L++ E
Sbjct: 172 SIPINLILAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKE 231
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPI 196
IK+ RLAM + L F IQA TG+GP+
Sbjct: 232 IKNGRLAMFSMLGFFIQAYVTGEGPV 257
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH WAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 32 FAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 91
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 92 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 148
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 149 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 184
>gi|388506818|gb|AFK41475.1| unknown [Lotus japonicus]
Length = 260
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 99/227 (43%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 81 GDFGFDPLGLGKDPAFLKW----------------------------------------- 99
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM LG +A +GV W +AG PFS +L+
Sbjct: 100 --YREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADP--------NAIAPFSFGSLLG 149
Query: 123 IEVIVIGYIEYQR-----NAELDPVK------------------RLYPGG-YFDPLGLAS 158
++I++G++E +R N + V+ + YPGG +FDPL LA
Sbjct: 150 TQLILMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGKFFDPLALAG 209
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKHARLAM+A LIF +A GK P+
Sbjct: 210 TLQDGVYIPDKEKLERLKLAEIKHARLAMLAMLIFYFEAG-QGKTPL 255
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG + FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 80 PGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 126
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 99/227 (43%), Gaps = 73/227 (32%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD G+DPLGLGK T ++
Sbjct: 120 LAGDYGYDPLGLGKDTATVE---------------------------------------- 139
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVE-------ALTGVAWQDAGKVELVEGS-SYLGQP 112
++R ELIH RWAML G I E A+ G W + G L G+ +Y P
Sbjct: 140 ---KYRAYELIHARWAMLAAAGIIIPEGLQANGAAIKGGTWFETGAEMLNGGTLNYFAVP 196
Query: 113 L-----PFSLTTLIWIEVIVIGYIE-YQRNAELDP----------------VKRLYPGGY 150
P L ++ IEV ++G +E Y+++ E P + LYPGG
Sbjct: 197 WGIINNPLPLFLVVVIEVALLGAVERYRQSGEGPPGYSPGVGKFDSSIFSGLDNLYPGGP 256
Query: 151 FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
FDPLGLA DP L++ EIK+ RLA+++ L F +Q+ TG+GP +
Sbjct: 257 FDPLGLADDPETFAELKVKEIKNGRLALISVLGFAVQSYVTGEGPYA 303
>gi|8954298|gb|AAD27882.2|AF139470_1 chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
Length = 258
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 99/227 (43%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 79 GDFGFDPLGLGKDPAFLKW----------------------------------------- 97
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM LG +A +GV W +AG PFS +L+
Sbjct: 98 --YREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADP--------NAIAPFSFGSLLG 147
Query: 123 IEVIVIGYIEYQR-----NAELDPV------------------KRLYPGG-YFDPLGLAS 158
++I++G++E +R N + V ++ YPGG +FDPLG A
Sbjct: 148 TQLILMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANATGEQGYPGGKFFDPLGFAG 207
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKHAR+AM+A LIF +A GK P+
Sbjct: 208 TLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAG-QGKTPL 253
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG + FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 78 PGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 124
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 77/150 (51%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG + E L W AG EG Y G P
Sbjct: 94 KNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLI 153
Query: 116 SLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW +V+++G IE R LDP L PGG FDPLGLA DP L
Sbjct: 154 HAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDP---LLPGGAFDPLGLADDPEACAEL 210
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 211 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|543939|sp|P36494.1|CB4_SPIOL RecName: Full=Chlorophyll a-b binding protein CP24, chloroplastic;
Flags: Precursor
gi|437991|emb|CAA81105.1| 20 kDa protein of CP24 precursor protein [Spinacia oleracea]
Length = 261
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 99/227 (43%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 82 GDFGFDPLGLGKDPAFLKW----------------------------------------- 100
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAML LG +A TG+ W +AG G PFS TL+
Sbjct: 101 --YREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADP--------GAVAPFSFGTLLG 150
Query: 123 IEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS 158
+++++G++E +R + P R YPGG +FDPL LA
Sbjct: 151 TQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAG 210
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKHARLAM+A LIF +A GK P+
Sbjct: 211 TISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAG-QGKTPL 256
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG + FDPLGL DP L+ + AE+ H R AM+A L + A+TG
Sbjct: 81 PGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTG 127
>gi|19575|emb|CAA49271.1| chlorophyll a/b/c binding protein precursor [Mantoniella squamata]
Length = 231
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 92/189 (48%), Gaps = 27/189 (14%)
Query: 28 QNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE 87
+ K D+ G GE +P+ P FG ++ E E+IHGRWAMLG GA E
Sbjct: 26 STVVKADIYPEFGTYPGGGE---SPIIP----FGSEKNAEREVIHGRWAMLGVTGAWTTE 78
Query: 88 ALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQ 134
TG+ W AG + + + + P ++ L W IEV+++G E
Sbjct: 79 NGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWAVLAIEVVLVGLAEAY 138
Query: 135 RNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA 188
R D V + PGG FD LGLA + G LE L++ E+KH RL+M A+L QA
Sbjct: 139 RTGLSDSPFEELTVGDVSPGGRFDSLGLA-ESGDLEELKIKELKHCRLSMFAWLGCIFQA 197
Query: 189 AFTGKGPIS 197
T +GPI+
Sbjct: 198 LATQEGPIA 206
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 86/151 (56%), Gaps = 12/151 (7%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQ 111
+++ ELIH RWAMLG G I EA W G + L++G++ Y G+
Sbjct: 113 FAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGK 171
Query: 112 PLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAE 170
+P +L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ E
Sbjct: 172 NIPINLILAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKE 231
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
IK+ RLAM + L F IQA TG+GP+ +A
Sbjct: 232 IKNGRLAMFSMLGFFIQAYVTGQGPVENLAA 262
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLG-QP 112
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG Q
Sbjct: 71 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEACWFKAGSQIFSEGGLDYLGNQS 130
Query: 113 LPFSLTTL-IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
L + + L IW +VI++G +E R A DP+ YPGG FDPL LA DP
Sbjct: 131 LIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLALADDPEAFA 187
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 188 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 223
>gi|413919930|gb|AFW59862.1| chlorophyll a/b-binding apoprotein CP24 Precursor [Zea mays]
Length = 248
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 100/227 (44%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 69 GDFGFDPLGLGKDPAFLKW----------------------------------------- 87
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM LG +A +G+ W +AG + S+ PFS +L+
Sbjct: 88 --YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG----ADPSAI----APFSFGSLLG 137
Query: 123 IEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS 158
+++++G++E +R + P R YPGG +FDPLGLA
Sbjct: 138 TQLLLMGWVESKRWVDFFNPDSQAVEWATPWSRTAENFANFTGEQGYPGGKFFDPLGLAG 197
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKHAR+AM+A L F +A GK P+
Sbjct: 198 TVKDGVYIPDVDKLERLKLAEIKHARIAMLAMLAFYFEAG-QGKTPL 243
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG + FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 68 PGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 114
>gi|145079288|tpg|DAA05908.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm10 [Acetabularia acetabulum]
Length = 224
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 78/149 (52%), Gaps = 21/149 (14%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT---GVA-----WQDAGKVELVEGS-SYLGQP 112
+R+RE ELIH RWAMLG LG + E L GV+ W AG EG YLG
Sbjct: 79 FRRYREQELIHARWAMLGALGCVTPEILAKYGGVSFGESVWFKAGSQIFQEGGLDYLGNS 138
Query: 113 LPFSLTTLIWI---EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKL 163
++ I +V+++G IE R LDP LYPGG FDPLGLA DP
Sbjct: 139 SLVHAQYILAILGCQVLLMGAIEAYRVNGGPLGEGLDP---LYPGGQFDPLGLADDPDTF 195
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
L++ EIK+ RLAM + F +QA TG
Sbjct: 196 AELKVKEIKNGRLAMFSMFGFYVQALVTG 224
>gi|15487724|gb|AAL00905.1|AF398727_1 ASCAB9-A [Dubautia laxa]
Length = 171
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 85/148 (57%), Gaps = 12/148 (8%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLP 114
++ ELIH RWAMLG G I EA W G + L++G++ Y G+ +P
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGAL-LLDGNTLNYFGKNIP 59
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKH 173
+L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ EIK+
Sbjct: 60 INLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 119
Query: 174 ARLAMVAFLIFGIQAAFTGKGPISFVAT 201
RLAM + F I+A TG+GP+ +A+
Sbjct: 120 GRLAMFSMFAFFIKAYVTGQGPVENLAS 147
>gi|308801082|ref|XP_003075322.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029299|gb|AAY27548.1| chloroplast light-harvesting complex I protein precursor Lhca1
[Ostreococcus tauri]
gi|116061876|emb|CAL52594.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 225
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 75/144 (52%), Gaps = 8/144 (5%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLI 121
L R+RE EL+H RWAM+G GA+ VE W A + YLG L +I
Sbjct: 66 LARYREAELMHARWAMMGVAGAVGVEIAGQGDWASAQPTTWDATAKYLGNETHAPLFAVI 125
Query: 122 WIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAF 181
+ +++ + E QR A RLYPGG FDP GL S E L+ E+ + R+AM+AF
Sbjct: 126 GVNGVLVAFAESQRQAATGEA-RLYPGGSFDPAGL-SKGKDFETLKRKELANGRVAMMAF 183
Query: 182 LIFGI----QAAFTGKGPISFVAT 201
FGI QA +G GP+ +A
Sbjct: 184 --FGIMAQHQADPSGPGPVKQLAN 205
>gi|145341715|ref|XP_001415950.1| prasinophyte light harvesting complex, chlorophyll binding protein
[Ostreococcus lucimarinus CCE9901]
gi|144576173|gb|ABO94242.1| prasinophyte light harvesting complex, chlorophyll binding protein
[Ostreococcus lucimarinus CCE9901]
Length = 254
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 94/188 (50%), Gaps = 27/188 (14%)
Query: 29 NLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEA 88
+LA D+ G GE +P+ P FG ++ E E+IHGRWAMLG GA A E
Sbjct: 50 SLAPPDLYPEFGTYPGGGE---SPIIP----FGDEKNAEREIIHGRWAMLGVTGAWAAEN 102
Query: 89 LTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQR 135
TG+ W AG + + + + P ++ L W IE+ ++G E R
Sbjct: 103 GTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPAGSGYPNFWAVLAIEIFLVGSAESYR 162
Query: 136 NAEL-DPVKRL-----YPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAA 189
+P L PGG FDPLG A + G LE L++ E+KH+RL+M A+L QA
Sbjct: 163 TGIFENPFPELTQGDVTPGGRFDPLGFA-EAGDLEELKIKELKHSRLSMFAWLGCIFQAL 221
Query: 190 FTGKGPIS 197
T +GPI+
Sbjct: 222 ATQEGPIA 229
>gi|195617280|gb|ACG30470.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|195639966|gb|ACG39451.1| chlorophyll a-b binding protein CP24 [Zea mays]
Length = 244
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 100/227 (44%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 65 GDFGFDPLGLGKDPAFLKW----------------------------------------- 83
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM LG +A +G+ W +AG + S+ PFS +L+
Sbjct: 84 --YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG----ADPSAI----APFSFGSLLG 133
Query: 123 IEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS 158
+++++G++E +R + P R YPGG +FDPLGLA
Sbjct: 134 TQLLLMGWVESKRWVDFFNPDSQAVEWATPWSRTAENFANFTGEQGYPGGKFFDPLGLAG 193
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKHAR+AM+A L F +A GK P+
Sbjct: 194 TVKDGVYIPDVDKLERLKLAEIKHARIAMLAMLAFYFEAG-QGKTPL 239
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG + FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 64 PGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 110
>gi|1098325|prf||2115393A chlorophyll a/b/c-binding protein
Length = 200
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 82/157 (52%), Gaps = 20/157 (12%)
Query: 60 FGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTT 119
FG ++ E E+IHGRWAMLG GA A E TG+ W AG + + + + P ++
Sbjct: 20 FGSEKNAEREVIHGRWAMLGVTGAWAAENGTGIPWFTAGTLCTPDDCTAVADKFPGAVAP 79
Query: 120 L---------IW----IEVIVIGYIEYQRNAELDP------VKRLYPGGYFDPLGLASDP 160
L W IEV+++G E R D V + PGG FD LGLA +
Sbjct: 80 LAPEGSGYPSFWAVLAIEVVLVGLAEAYRTGLSDSPFEELTVGDVSPGGRFDXLGLA-ES 138
Query: 161 GKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
G LE L++ E+KH RL+M A+L QA T +GPI+
Sbjct: 139 GDLEELKIKELKHCRLSMFAWLGCIFQALATQEGPIA 175
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 82/156 (52%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG +G YLG
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSDGGLDYLGNSS 150
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP LYPGG FDPLGLA DP
Sbjct: 151 LVHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
>gi|156046252|gb|ABU42594.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 12/148 (8%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLP 114
++ EL H RWAMLG G I EA W G + L++G++ Y G+ +P
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGAL-LLDGNTLNYFGKNIP 59
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKH 173
+L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ EIK+
Sbjct: 60 INLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 119
Query: 174 ARLAMVAFLIFGIQAAFTGKGPISFVAT 201
RLAM + F IQA TG+GP+ +A+
Sbjct: 120 GRLAMFSMFAFFIQAYVTGQGPVENLAS 147
>gi|156046250|gb|ABU42593.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 12/148 (8%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLP 114
++ EL H RWAMLG G I EA W G + L++G++ Y G+ +P
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGAL-LLDGNTLNYFGKNIP 59
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKH 173
+L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ EIK+
Sbjct: 60 INLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 119
Query: 174 ARLAMVAFLIFGIQAAFTGKGPISFVAT 201
RLAM + F IQA TG+GP+ +A+
Sbjct: 120 GRLAMFSMFAFFIQAYVTGQGPVENLAS 147
>gi|154357502|gb|ABS78775.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357504|gb|ABS78776.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357506|gb|ABS78777.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357508|gb|ABS78778.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357510|gb|ABS78779.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357512|gb|ABS78780.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357514|gb|ABS78781.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357516|gb|ABS78782.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357518|gb|ABS78783.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357520|gb|ABS78784.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357522|gb|ABS78785.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357524|gb|ABS78786.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357526|gb|ABS78787.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357528|gb|ABS78788.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357530|gb|ABS78789.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357532|gb|ABS78790.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357534|gb|ABS78791.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357536|gb|ABS78792.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357538|gb|ABS78793.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357540|gb|ABS78794.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357542|gb|ABS78795.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357544|gb|ABS78796.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357546|gb|ABS78797.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357548|gb|ABS78798.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357550|gb|ABS78799.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357552|gb|ABS78800.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357554|gb|ABS78801.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357556|gb|ABS78802.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357558|gb|ABS78803.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357562|gb|ABS78805.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357566|gb|ABS78807.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357568|gb|ABS78808.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357572|gb|ABS78810.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357574|gb|ABS78811.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 86/148 (58%), Gaps = 12/148 (8%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLP 114
++ ELIH RWAMLG G I EAL W G + L++G++ Y G+ +P
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIP 59
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKH 173
+L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ EIK+
Sbjct: 60 INLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKN 119
Query: 174 ARLAMVAFLIFGIQAAFTGKGPISFVAT 201
RLAM A L F IQA TG+GP+ +A
Sbjct: 120 GRLAMFAMLGFFIQAYVTGEGPVENLAK 147
>gi|15487762|gb|AAL00924.1|AF398746_1 ASCAB9 [Carlquistia muirii]
Length = 171
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 12/148 (8%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLP 114
++ ELIH RWAMLG G I EA W G + L++G++ Y G+ +P
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGAL-LLDGNTLNYFGKNIP 59
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKH 173
+L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ EIK+
Sbjct: 60 INLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 119
Query: 174 ARLAMVAFLIFGIQAAFTGKGPISFVAT 201
RLAM + F IQA G+GP+ +A+
Sbjct: 120 GRLAMFSMFAFFIQAYVAGQGPVENLAS 147
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 93/227 (40%), Gaps = 73/227 (32%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD G+DPLGLGK E ++
Sbjct: 73 LAGDYGYDPLGLGKDEEQVE---------------------------------------- 92
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEAL-------TGVAWQDAGKVELVEGS-SYLGQP 112
++R EL+H RWAML G + E L G W + G L G+ +Y P
Sbjct: 93 ---KYRANELLHARWAMLAAAGILIPEGLQANGADIKGGTWFETGAEMLNGGTLNYFAVP 149
Query: 113 L-----PFSLTTLIWIEVIVIGYIEYQR-----------------NAELDPVKRLYPGGY 150
P L + IE++++G +E R + D + +LYPGG
Sbjct: 150 FGVVQNPLPLAAVTLIEIVLLGAVEKFRVDGTGPAGFSPGVGKFDSDIFDGLDQLYPGGP 209
Query: 151 FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
FDPL LA DP LQ+ E K+ RLAMV L F IQ+ TG+GP +
Sbjct: 210 FDPLNLADDPEVFAELQVKETKNGRLAMVGVLAFAIQSYVTGEGPYA 256
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 54 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 113
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA P
Sbjct: 114 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLAEVPEAFA 170
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F + A TGKGP+ +A
Sbjct: 171 ELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLA 206
>gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWA+L LG + E L+ GV W G EG YLG P
Sbjct: 93 FAKNRELEVIHCRWAILERLGCVFPELLSRNGVKFGEAVWFKVGSQIFSEGGLDYLGNPS 152
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 209
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
>gi|356524850|ref|XP_003531041.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like isoform 1 [Glycine max]
gi|356524852|ref|XP_003531042.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like isoform 2 [Glycine max]
Length = 258
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 99/227 (43%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 79 GDYGFDPLGLGKDPAFLKW----------------------------------------- 97
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM +G +A +GV W +AG PFS +L+
Sbjct: 98 --YREAELIHGRWAMAAVVGIFIGQAWSGVPWFEAGADP--------NAIAPFSFGSLLG 147
Query: 123 IEVIVIGYIEYQR-----NAELDPV------------------KRLYPGG-YFDPLGLAS 158
+++++G++E +R N + V ++ YPGG +FDPLG A
Sbjct: 148 TQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFGNSTGEQGYPGGKFFDPLGFAG 207
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKHAR+AM+A LIF +A GK P+
Sbjct: 208 AIKDGVYIPDADKLERLKLAEIKHARIAMLAMLIFYFEAG-QGKTPL 253
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG Y FDPLGL DP L+ + AE+ H R AM A + I A++G
Sbjct: 78 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSG 124
>gi|15487756|gb|AAL00921.1|AF398743_1 ASCAB9 [Deinandra lobbii]
Length = 171
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 12/148 (8%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLP 114
++ ELIH RWAMLG G I EA W G + L++G++ Y G+ +P
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGAL-LLDGNTLNYFGKNIP 59
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKH 173
+L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ EIK+
Sbjct: 60 INLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 119
Query: 174 ARLAMVAFLIFGIQAAFTGKGPISFVAT 201
RLAM + F IQA TG+ P+ +A+
Sbjct: 120 GRLAMFSMFAFFIQAYVTGQCPVENLAS 147
>gi|424513454|emb|CCO66076.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Bathycoccus prasinos]
Length = 231
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 94/190 (49%), Gaps = 28/190 (14%)
Query: 28 QNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE 87
+ K D+ G GE +P+ P FG ++ E E+IHGRWA LG GA A E
Sbjct: 25 SKVVKADIYPEFGTYPGGGE---SPIIP----FGNEKNAEREIIHGRWAQLGVTGAWAAE 77
Query: 88 ALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIE-Y 133
TG+ W AG + + + + P ++ L W IE I++G E Y
Sbjct: 78 NGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWNVLIIETILVGGAEAY 137
Query: 134 QRNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQ 187
+ +P + PGG FDPLGLA + G LE L++ E+KH RL+M A+L +Q
Sbjct: 138 RTGLAANPFDDGLVAGDVSPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWLGCIMQ 196
Query: 188 AAFTGKGPIS 197
A T +GPI+
Sbjct: 197 ALATQEGPIA 206
>gi|255646598|gb|ACU23773.1| unknown [Glycine max]
Length = 258
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 97/227 (42%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 79 GDYGFDPLGLGKDPAFLKW----------------------------------------- 97
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM +G +A +GV W +AG PFS +L+
Sbjct: 98 --YREAELIHGRWAMAAVVGIFIGQAWSGVPWFEAGADP--------NAIAPFSFGSLLG 147
Query: 123 IEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS 158
+++++G++E +R + P + YPGG +FDPLG A
Sbjct: 148 TQLLLMGWVESKRWVDFFNPDSLSVEWATPWSKTAENFGNSTGEQGYPGGKFFDPLGFAG 207
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKHAR+AM+A LIF +A GK P+
Sbjct: 208 AIKDGVYIPDADKLERLKLAEIKHARIAMLAMLIFYFEAG-QGKTPL 253
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG Y FDPLGL DP L+ + AE+ H R AM A + I A++G
Sbjct: 78 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSG 124
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 82/156 (52%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAM G LG + E L+ GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHCRWAMPGALGCVFPELLSRNGVKFGEAVWFKAGSQIFQEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A DP+ YPGG FDPLGLA P
Sbjct: 150 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADVPEAFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 207 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQ 111
+++ ELIH RWAMLG G I EAL W G + L++G++ Y G
Sbjct: 113 FAKYQAFELIHARWAMLGAAGFIIPEALNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGN 171
Query: 112 PLPFSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAE 170
+P +L + EV+++G EY R L+ +L+PGG FDPLGLA+DP + L++ E
Sbjct: 172 SIPINLILAVVAEVVLVGGAEYYRITNGLEFDDKLHPGGPFDPLGLATDPDQAALLKVKE 231
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPI 196
IK+ RLAM + L F IQA TG+GP
Sbjct: 232 IKNGRLAMFSMLGFFIQAYVTGEGPF 257
>gi|454250|emb|CAA82853.1| light-harvesting chlorophyll a/b binding protein [Trifolium repens]
Length = 167
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 77/144 (53%), Gaps = 20/144 (13%)
Query: 70 LIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL- 120
+IH RWAMLG LG E L GV W AG EG YLG P ++
Sbjct: 1 VIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIL 60
Query: 121 -IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIK 172
IW +V+++G++E R LDP LYPGG FDPLGLA DP L++ E+K
Sbjct: 61 AIWATQVVLMGFVEGYRIGGGPLGEGLDP---LYPGGAFDPLGLADDPDAFAELKVKELK 117
Query: 173 HARLAMVAFLIFGIQAAFTGKGPI 196
+ RLAM + F +QA TGKGP+
Sbjct: 118 NGRLAMFSMFGFFVQAIVTGKGPV 141
>gi|424513344|emb|CCO65966.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Bathycoccus prasinos]
Length = 231
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 93/190 (48%), Gaps = 28/190 (14%)
Query: 28 QNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE 87
+ K D+ G GE +P+ P FG ++ E E+IHGRWA LG GA A E
Sbjct: 25 SKVVKADIYPEFGTYPGGGE---SPIIP----FGNEKNAEREIIHGRWAQLGVTGAWAAE 77
Query: 88 ALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIE-Y 133
TG+ W AG + + + + P ++ L W IE +++G E Y
Sbjct: 78 NGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWNVLIIETVLVGAAEAY 137
Query: 134 QRNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQ 187
+ +P + PGG FDPLGLA + G LE L++ E+KH RL+M A+L Q
Sbjct: 138 RTGLAANPFDDGLVAGDVSPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWLGCIFQ 196
Query: 188 AAFTGKGPIS 197
A T +GPI+
Sbjct: 197 ALATQEGPIA 206
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 79/150 (52%), Gaps = 20/150 (13%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPF 115
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 94 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLV 153
Query: 116 SLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENL 166
++ IW +V+++G +E R A +DP LYPGG FDPLGLA DP L
Sbjct: 154 HAQSILAIWACQVVLMGAVEGYRIAGGPLGEIVDP---LYPGGSFDPLGLADDPEAFAEL 210
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM + F +QA TG P
Sbjct: 211 KVKEIKNGRLAMFSMFGFFVQAIVTGGEPC 240
>gi|356512075|ref|XP_003524746.1| PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein
CP24 10A, chloroplastic-like [Glycine max]
Length = 258
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 96/227 (42%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 79 GDYGFDPLGLGKDPAFLKW----------------------------------------- 97
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM +G +A +GV W +AG PFS +L+
Sbjct: 98 --YREAELIHGRWAMAAVVGIFIGQAWSGVPWFEAGADP--------NAIAPFSFGSLLG 147
Query: 123 IEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS 158
+++++G++E +R + P R YPGG +FDPLG A
Sbjct: 148 TQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFGNSTGEQGYPGGKFFDPLGFAG 207
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+L EIKHAR+AM+A LIF +A GK P+
Sbjct: 208 TIKDGVYIPDTDKLERLKLTEIKHARIAMLAMLIFYFEAG-QGKTPL 253
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG Y FDPLGL DP L+ + AE+ H R AM A + I A++G
Sbjct: 78 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSG 124
>gi|15487728|gb|AAL00907.1|AF398729_1 ASCAB9-A [Dubautia raillardioides]
Length = 171
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 12/148 (8%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLP 114
++ ELIH RWAMLG G I EA W G + L++G++ Y G+ +
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGAL-LLDGNTLNYFGKNIH 59
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKH 173
+L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ EIK+
Sbjct: 60 INLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 119
Query: 174 ARLAMVAFLIFGIQAAFTGKGPISFVAT 201
RLAM + F IQA TG+GP+ +A+
Sbjct: 120 GRLAMFSMFAFFIQAYVTGQGPVENLAS 147
>gi|424513686|emb|CCO66308.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Bathycoccus prasinos]
Length = 231
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 93/190 (48%), Gaps = 28/190 (14%)
Query: 28 QNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE 87
+ K D+ G GE +P+ P FG ++ E E+IHGRWA LG GA A E
Sbjct: 25 SKVVKADIYPEFGTYPGGGE---SPIIP----FGDEKNAEREIIHGRWAQLGVTGAWAAE 77
Query: 88 ALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIE-Y 133
TG+ W AG + + + + P ++ L W IE I++G E Y
Sbjct: 78 NGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWNVLIIETILVGGAEAY 137
Query: 134 QRNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQ 187
+ +P + PGG FDPLGLA + G LE L++ E+KH RL+M A+L Q
Sbjct: 138 RTGLAANPFDDGLVAGDVSPGGRFDPLGLA-ESGDLEELKIKELKHCRLSMFAWLGCIFQ 196
Query: 188 AAFTGKGPIS 197
A T +GPI+
Sbjct: 197 ALATQEGPIA 206
>gi|154357564|gb|ABS78806.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 85/148 (57%), Gaps = 12/148 (8%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLP 114
++ ELIH RWAMLG G I EAL W G + L++G++ Y G+ +P
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIP 59
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKH 173
+L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ EIK+
Sbjct: 60 INLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKN 119
Query: 174 ARLAMVAFLIFGIQAAFTGKGPISFVAT 201
RLAM L F IQA TG+GP+ +A
Sbjct: 120 GRLAMFGMLGFFIQAYVTGEGPVENLAK 147
>gi|384251912|gb|EIE25389.1| putative chlorophyll a/b-binding protein [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 94/180 (52%), Gaps = 23/180 (12%)
Query: 46 GELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEAL--TGVA------WQDA 97
G+ PLQ + ++ E EL+H RWAMLG LGA E L +GV+ W
Sbjct: 94 GDYAYDPLQLAQDQDKFDQYFEFELLHARWAMLGALGAGIPEILQYSGVSDFLEARWWAV 153
Query: 98 GKVELV-EGSSYLG-QPLPFS----LTTLIWIEVIVIGYIEYQRNAELD---------PV 142
G +L E +YLG L + + + +V+++ EY R ++ P
Sbjct: 154 GGAKLQGEDLNYLGVSGLRIAGGQGIAIIAICQVLLMFGPEYARACGIEALEPLGLYLPG 213
Query: 143 KRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATF 202
+ YPGG FDPLGL+ DP +LQ+ EIK+ RLA+VA++ F QAA T KGPI+ + F
Sbjct: 214 DKNYPGGLFDPLGLSKDPASFADLQVKEIKNGRLALVAWVGFAAQAAVTRKGPIADLLDF 273
>gi|15487718|gb|AAL00902.1|AF398724_1 ASCAB9-A [Argyroxiphium sandwicense]
Length = 171
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 84/148 (56%), Gaps = 12/148 (8%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLP 114
++ ELIH RWAMLG G I EA W + L++G++ Y G+ +P
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKT-RALLLDGNTLNYFGKNIP 59
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKH 173
+L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ EIK+
Sbjct: 60 INLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 119
Query: 174 ARLAMVAFLIFGIQAAFTGKGPISFVAT 201
RLAM + F I+A TG+GP+ +A+
Sbjct: 120 GRLAMFSMFAFFIKAYVTGQGPVENLAS 147
>gi|154357570|gb|ABS78809.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 85/148 (57%), Gaps = 12/148 (8%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLP 114
++ ELIH RWAMLG G I EAL W G + L++G++ Y G+ +P
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIP 59
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKH 173
+L + EV+++G EY R LD +L+PGG FDPLGLA DP + L++ EIK+
Sbjct: 60 INLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKN 119
Query: 174 ARLAMVAFLIFGIQAAFTGKGPISFVAT 201
RLAM L F IQA TG+GP+ +A
Sbjct: 120 GRLAMFXMLGFFIQAYVTGEGPVENLAK 147
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 75/141 (53%), Gaps = 28/141 (19%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVE--ALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLI 121
+ RE E+IH RWAMLG LG + E A TGV + +A + + S
Sbjct: 94 KNRELEVIHCRWAMLGALGCVFPELLAKTGVKFGEAVWFKAIWAS--------------- 138
Query: 122 WIEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHAR 175
+V+++G IE R LDP LYPGG FDPLGLA DP L++ EIK+ R
Sbjct: 139 --QVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGR 193
Query: 176 LAMVAFLIFGIQAAFTGKGPI 196
LAM + F +QA TGKGPI
Sbjct: 194 LAMFSMFGFFVQAIVTGKGPI 214
>gi|303274206|ref|XP_003056426.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226462510|gb|EEH59802.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 257
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 92/187 (49%), Gaps = 26/187 (13%)
Query: 29 NLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEA 88
+ A D+ GV GE +P+ P+ + +R E+IHGRWAMLG GA A E
Sbjct: 54 STAPPDLYPEFGVYPGGGE---SPIIPFDDDKNAER----EIIHGRWAMLGVTGAWAAEN 106
Query: 89 LTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQR 135
TG+ W AG + + + + P ++ L W IEV ++G E R
Sbjct: 107 GTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWAVLSIEVFLVGSAECYR 166
Query: 136 NAEL-DPVKRL----YPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAF 190
+P L PGG FDPLG A + G LE L++ E+KH RL+M A+L QA
Sbjct: 167 TGLFENPFPELELSVTPGGRFDPLGFA-EAGDLEELKVKELKHCRLSMFAWLGCIAQALA 225
Query: 191 TGKGPIS 197
T +GPI+
Sbjct: 226 TQEGPIA 232
>gi|351728089|ref|NP_001236415.1| uncharacterized protein LOC100527463 [Glycine max]
gi|255632410|gb|ACU16555.1| unknown [Glycine max]
Length = 259
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 96/227 (42%), Gaps = 86/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 81 GDYGFDPLGLGKDPAFLKW----------------------------------------- 99
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM LG +A +GV W +AG PFS TL+
Sbjct: 100 --YREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADP--------NAIAPFSFGTLLG 149
Query: 123 IEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS 158
++I++G++E +R + P R YPGG +FDPL A
Sbjct: 150 TQLILMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANASGEHGYPGGKFFDPLSFAG 209
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKHAR+AM+A LI + ++T K P+
Sbjct: 210 TIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLISTL--SWTRKTPL 254
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG Y FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 80 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 126
>gi|255072837|ref|XP_002500093.1| prasinophyte specific light harvesting complex protein, chloroplast
precursor [Micromonas sp. RCC299]
gi|226515355|gb|ACO61351.1| prasinophyte specific light harvesting complex protein, chloroplast
precursor [Micromonas sp. RCC299]
Length = 239
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 79/160 (49%), Gaps = 21/160 (13%)
Query: 58 EVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKV----ELVEGSSYLGQPL 113
+V +Q+ E E+IHGRWAML G +A E TGV W + G + +E + G
Sbjct: 58 DVLSMQKAAEYEVIHGRWAMLAIPGIVAQEQATGVPWYETGALCTPSSCLENYYFPGAIA 117
Query: 114 PF--------SLTTLIWIEVIVIGYIEYQRNAELDPVK--------RLYPGGYFDPLGLA 157
P S ++ EVI +G E R P K +YPGG FDP
Sbjct: 118 PLAPEGSGLPSFWAVLAFEVIFVGLAEAYRGGLTAPPKGFPSPADVGVYPGGRFDPFKF- 176
Query: 158 SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
S+ +E +++ E+KH RLAM AFL Q A+TG GP++
Sbjct: 177 SEKVDMEEMKIKELKHCRLAMGAFLGCLAQQAYTGVGPVA 216
>gi|365268963|gb|AEW70714.1| light harvesting chlorophyll a-b binding protein 6 [Phyllostachys
edulis]
Length = 250
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 99/227 (43%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 71 GDYGFDPLGLGKDPAFLKW----------------------------------------- 89
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM LG +A +GV W +AG + G PFS TL+
Sbjct: 90 --YREAELIHGRWAMSAVLGIFVGQAWSGVPWFEAG--------AQPGAVAPFSFGTLLG 139
Query: 123 IEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS 158
+++++G++E +R + P R YPGG +FDPLGL
Sbjct: 140 TQLLLMGWVESKRWVDFFSPDSQSVEWATPWSRTADNFANATGEQGYPGGKFFDPLGLGG 199
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKHAR+AM+A LIF +A GK P+
Sbjct: 200 ITQDGVYIPDADKLERLKLAEIKHARVAMLAMLIFYFEAG-QGKTPL 245
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG Y FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 70 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMSAVLGIFVGQAWSG 116
>gi|223949713|gb|ACN28940.1| unknown [Zea mays]
Length = 159
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 76/135 (56%), Gaps = 12/135 (8%)
Query: 77 MLGTLGAIAVEALTG--------VAWQDAGKVELVEGS--SYLGQPLPFSLTTLIWIEVI 126
MLG GA+ EA W G + L++G+ SY G +P +L + EV+
Sbjct: 1 MLGAAGAVIPEACNKFGANCGPEAVWFKTGAL-LLDGNTLSYFGNSIPINLVVAVIAEVV 59
Query: 127 VIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFG 185
++G EY R LD +L+PGG FDPLGLASDP + L++ EIK+ RLAM + F
Sbjct: 60 LVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSMFAFF 119
Query: 186 IQAAFTGKGPISFVA 200
IQA TG+GP+ +A
Sbjct: 120 IQAYVTGEGPVENLA 134
>gi|255070349|ref|XP_002507256.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas sp. RCC299]
gi|226522531|gb|ACO68514.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas sp. RCC299]
Length = 254
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 92/187 (49%), Gaps = 26/187 (13%)
Query: 29 NLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEA 88
+ A D+ GV GE +P+ P+ + +R E+IHGRWAMLG GA A E
Sbjct: 51 STAPPDLYPEFGVYPGGGE---SPIIPFDDDKNAER----EIIHGRWAMLGVTGAWAAEN 103
Query: 89 LTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQR 135
TG+ W AG + + + + P ++ L W IE+ ++G E R
Sbjct: 104 GTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWAVLAIEIFLVGSAECYR 163
Query: 136 NAEL-DPVKRL----YPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAF 190
+P L PGG FDPLG A + G LE L++ E+KH RL+M A+L QA
Sbjct: 164 TGLFENPFPELELSVTPGGRFDPLGFA-EAGDLEELKVKELKHCRLSMFAWLGCIFQALA 222
Query: 191 TGKGPIS 197
T +GPI+
Sbjct: 223 TQEGPIA 229
>gi|168009690|ref|XP_001757538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168009894|ref|XP_001757640.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691232|gb|EDQ77595.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691334|gb|EDQ77697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 219
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 79/160 (49%), Gaps = 41/160 (25%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLI 121
L+ +RE ELIHGRWAM +G + +GV W +AG PFS +L+
Sbjct: 56 LKWYREAELIHGRWAMAAVVGIFVGQGWSGVPWFEAGADPAALA--------PFSFGSLL 107
Query: 122 WIEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLA 157
+++++G++E +R + P R YPGG +FDPL LA
Sbjct: 108 GTQLLLMGWVETKRWIDFLNPGTQSVEWATPWSRTAENFNNSTGLQGYPGGKFFDPLALA 167
Query: 158 S---------DPGKLENLQLAEIKHARLAMVAFLIFGIQA 188
D KLE LQLAEIKHARLAMVA LIF +A
Sbjct: 168 GSVQGGQYVPDFSKLERLQLAEIKHARLAMVAMLIFYFEA 207
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKG 194
PG Y FDPLGL DP L+ + AE+ H R AM A + GI F G+G
Sbjct: 39 PGDYGFDPLGLGRDPAALKWYREAELIHGRWAMAA--VVGI---FVGQG 82
>gi|3153151|emb|CAA06961.1| chlorophyll a/b-binding protein [Hordeum vulgare subsp. vulgare]
Length = 75
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/58 (77%), Positives = 49/58 (84%), Gaps = 1/58 (1%)
Query: 145 LYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
LYPGG YFDPLGLA+DP K E LQLAEIKHARLAMVAFL F +QAA TGKGP++ AT
Sbjct: 1 LYPGGSYFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWAT 58
>gi|167966192|gb|ACA13177.1| chloroplast a/b binding protein cab-PhE11 [Phyllostachys edulis]
Length = 252
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 98/227 (43%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 73 GDYGFDPLGLGKDPAFLKW----------------------------------------- 91
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM LG A +GV W +AG + G PFS TL+
Sbjct: 92 --YREAELIHGRWAMSAVLGIFVGRAWSGVPWFEAG--------AQPGAVAPFSFGTLLG 141
Query: 123 IEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS 158
+++++G++E +R + P R YPGG +FDPLGL
Sbjct: 142 TQLLLMGWVESKRWVDFFSPDSQSVEWATPWSRTADNFANATGEQGYPGGKFFDPLGLGG 201
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKHAR+AM+A LIF +A GK P+
Sbjct: 202 ITQDGVYIPDADKLERLKLAEIKHARVAMLAMLIFYFEAG-QGKTPL 247
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG Y FDPLGL DP L+ + AE+ H R AM A L + A++G
Sbjct: 72 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMSAVLGIFVGRAWSG 118
>gi|412993661|emb|CCO14172.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Bathycoccus prasinos]
Length = 253
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 23/161 (14%)
Query: 55 PYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLP 114
PYT+ ++ E ELIHGRWA LG GA A E TG+ W AG + + + + P
Sbjct: 73 PYTD----EKNAERELIHGRWAQLGVTGAWAAENGTGIPWFTAGTLCTPDDCTAVADKFP 128
Query: 115 FSLTTL---------IW----IEVIVIGYIEYQRNAEL-DPVKRL----YPGGYFDPLGL 156
++ L W IEV ++G E R +P L PGG FDPLG
Sbjct: 129 GAVAPLAPEGSGYPNFWAVLAIEVFLVGNAEAYRTGIFENPFPELELSVSPGGRFDPLGF 188
Query: 157 ASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
A + G LE L++ E+KH RL+M A+L QA T +GPI+
Sbjct: 189 A-EAGDLEELKIKELKHCRLSMFAWLGCIFQALATQEGPIA 228
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 96/219 (43%), Gaps = 79/219 (36%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLG E L+++
Sbjct: 84 GDFGFDPLGLGSDPETLRWNV--------------------------------------- 104
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFS 116
+ EL+H RWAMLG G E LT + +W DAGK+E +
Sbjct: 105 ----QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYDAGKLEYFTDT---------- 150
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGLAS 158
TTL IE+I IG+ E +R A++ DP+ RL YPGG +FDPLG S
Sbjct: 151 -TTLFIIELIFIGWAEGRRWADILKPGCVNTDPIFPNNRLTGTDVGYPGGLWFDPLGWGS 209
Query: 159 -DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
P K++ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 210 GSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 248
>gi|145079879|tpg|DAA05945.1| TPA_inf: chloroplast light-harvesting complex protein precursor
Lhcp1.1 [Micromonas sp. CCMP490]
Length = 259
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 93/187 (49%), Gaps = 26/187 (13%)
Query: 29 NLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEA 88
++A D+ GV GE +P+ P+++ +R E+IHGRWAMLG GA A E
Sbjct: 56 SIAPPDLYPEFGVYPGGGE---SPIIPFSDDKNAER----EIIHGRWAMLGVTGAWAAEN 108
Query: 89 LTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL---------IW----IEVIVIGYIEYQR 135
TG+ W AG + + + + P ++ L W +E+ ++G E R
Sbjct: 109 GTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWAVLALEIFLVGSAECYR 168
Query: 136 NAEL-DPVKRL----YPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAF 190
+P L PGG FDPLG A + G LE L++ E+KH RL+M A+L Q
Sbjct: 169 TGLFENPFPELELSVTPGGRFDPLGFA-EAGDLEELKIKELKHCRLSMFAWLGCIAQGLA 227
Query: 191 TGKGPIS 197
T +GPI+
Sbjct: 228 TQEGPIA 234
>gi|412991092|emb|CCO15937.1| putative lycopene beta cyclase [Bathycoccus prasinos]
Length = 1593
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 85/160 (53%), Gaps = 27/160 (16%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL---------TGVAWQDAGKVELVEGS---SYL 109
L +FRE ELI+GRWAML +G + E L T W + V +Y+
Sbjct: 1437 LLKFRERELINGRWAMLAAIGVLLPEFLFKFGLYGEGTDQHWWSTKIIHDVADGWQLTYM 1496
Query: 110 GQPLPFSLTTLIWI--------EVIVIGYIEYQRNAELDPVKRLYPGGY-FDPLGLASDP 160
G +P+ L L I E++ G E +R + LD +LYPGG FDPLGLA++
Sbjct: 1497 GSEIPWGLFWLPIIHLPLMFVAEMLRTGKFEIERFSTLD---KLYPGGRLFDPLGLAANQ 1553
Query: 161 GKLEN--LQLAEIKHARLAMVAFLIFGIQAAFTGKGPISF 198
+ E L+ EI+H RLAM+AF IF Q A TGKGP+ F
Sbjct: 1554 SEEEVRILKAIEIQHCRLAMLAFSIFCFQGA-TGKGPLDF 1592
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 94/215 (43%), Gaps = 63/215 (29%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD G+DPLGLG E L++
Sbjct: 61 LAGDYGWDPLGLGAKPEALKW--------------------------------------- 81
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALT-GVAWQDAGKVELV--------EGSSYLGQ 111
+R+ EL+H RWAML G +A E + GV + +AG E + EG LG
Sbjct: 82 ----YRQAELVHARWAMLAVAGILAQEIVKPGVFFYNAGLPENLPGINFGGPEGKVNLGG 137
Query: 112 PLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRL---------YPGGYFDPLGLASDPGK 162
L + W+EV I+ + + DP+ + YPGG FDP G + G
Sbjct: 138 LLAWEFLLFHWVEVRRWQDIKKKDSVNQDPIFKGNKVPNPELGYPGGIFDPFGFSK--GN 195
Query: 163 LENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
+ +Q EIK+ RLAMVAF+ F IQA TG+GP++
Sbjct: 196 FKEVQTKEIKNGRLAMVAFVGFIIQAQATGQGPLA 230
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 91/214 (42%), Gaps = 62/214 (28%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GDRGFDP GL K D D
Sbjct: 170 GDRGFDPFGLAK---------DPAD----------------------------------F 186
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFS 116
+FR+ E+ HGRWAMLG +G + E + AW DA V YLG P
Sbjct: 187 AKFRDSEVFHGRWAMLGLVGCLVPEVFGNLGIAQLPAWYDAATVANTSNLDYLGNPNLVH 246
Query: 117 LTTLIWI---EVIVIGYIEYQR-----NAELDPVKR-LYPGGYFDPLGLASDPGKLENLQ 167
+ + +I ++++G +E R +E +R YPGG FDPL L + P L+
Sbjct: 247 ASNVSFIALSTLLLMGPVEAWRWNGALASEAKSAERTTYPGGPFDPLKLGASP----ELK 302
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
L EIK+ RLAMV F Q+ TG+GP++ +A
Sbjct: 303 LKEIKNGRLAMVGMFGFWAQSYVTGEGPLANLAA 336
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 95/214 (44%), Gaps = 62/214 (28%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GDRGFDPLGL K E DF AKN
Sbjct: 379 GDRGFDPLGLAKDPE----DF-------AKN----------------------------- 398
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQP--LP 114
R+ E+ HGRWAMLG +G + E + AW +AG V YLG P +
Sbjct: 399 ---RDSEVYHGRWAMLGLVGCLVPEVFGNLGIAQLPAWYEAGAVANTGSLDYLGNPNLVH 455
Query: 115 FSLTTLIWIEVIVIGY-IEYQR-NAELDPVKR-----LYPGGYFDPLGLASDPGKLENLQ 167
S LI+ +++ IE R N ++ P + YPGG FDPL L + P L+
Sbjct: 456 ASNVPLIFFTTLLLFLPIEAWRWNGQIAPEAKSAERTTYPGGPFDPLKLGASP----ELK 511
Query: 168 LAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
L EIK+ RLAMV F Q+ TG+GP++ +A
Sbjct: 512 LKEIKNGRLAMVGMFGFWAQSYVTGEGPLANLAA 545
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 13/118 (11%)
Query: 93 AWQDAGKVELVEGSSYLGQP--LPFSLTTLIWIEVIVIGY-IEYQR-NAELDPVKR---- 144
AW +AG V YLG P + S LI+ +++ IE R N ++ P +
Sbjct: 14 AWYEAGAVANTGSLDYLGNPNLVHASNVPLIFFTTLLLFLPIEAWRWNGQIAPDAKSKEW 73
Query: 145 -LYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
YPGG FDPL L + P L+L EIK+ RLAMV F Q+ TG+GP++ +A
Sbjct: 74 TTYPGGPFDPLKLGASP----ELKLKEIKNGRLAMVGMFGFWAQSYVTGEGPLANLAA 127
>gi|255076759|ref|XP_002502049.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
gi|226517314|gb|ACO63307.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
Length = 393
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 78/161 (48%), Gaps = 26/161 (16%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS---SYLG 110
L R+RE EL+HGRWAMLG +GA EAL W G +L YLG
Sbjct: 219 LDRYRELELLHGRWAMLGVVGAAVPEALARFGGLELGEPVWWKVGAAKLNSPDLALDYLG 278
Query: 111 Q-----PLPFSLTTLIWIEVIVIGYIEYQRNAELD---------PVKRLYPGGY-FDPLG 155
L + +++++G EY R +D P R YPGG FDP G
Sbjct: 279 LGGFHIAGSSGLAVIAACQLVLMGGPEYARKVGIDSLVPVGVYLPGDRDYPGGAPFDPFG 338
Query: 156 LASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+++D E ++AE+KH RLAMVA L QA TG GP+
Sbjct: 339 VSADAAVFERQKVAEMKHGRLAMVAMLGCFAQAWATGVGPV 379
>gi|87313233|gb|ABD37912.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Chlamydomonas incerta]
Length = 232
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 81/145 (55%), Gaps = 15/145 (10%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL----TGVA---WQDAGKVELVEGS-SYLGQP- 112
+R+RE ELIH RWAMLG LG + E L T +A W AG EG YLG
Sbjct: 88 FKRYRELELIHARWAMLGALGCVTPELLAKNGTPIAEPVWFKAGAQIFQEGGLDYLGNAG 147
Query: 113 --LPFSLTTLIWIEVIVIGYIE-YQRNA--ELDPVKRLYPGG-YFDPLGLASDPGKLENL 166
S+ + ++VI++G IE Y+ N + + +L+PGG +FDPLGLA DP L
Sbjct: 148 LIHAQSILATLAVQVILMGAIEGYRVNGGPAGEGLDKLHPGGQFFDPLGLAEDPDAFAEL 207
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFT 191
++ EIK+ RLAM + F +QA T
Sbjct: 208 KVKEIKNGRLAMFSMFGFFVQAIVT 232
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 86/160 (53%), Gaps = 24/160 (15%)
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEAL--TGV------AWQDAGKVELVEGS-SYLGQ 111
QR+ E++H RWAML LGA+ E L +G W G +L + YLG
Sbjct: 157 AFQRYFNFEILHARWAMLAALGALIPEVLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGI 216
Query: 112 P-LPFS----LTTLIWIEVIVIGYIEYQRNAELDPVKRL---------YPGG-YFDPLGL 156
P L F+ + + + + I++ EY R ++ ++ L YPGG FDPL L
Sbjct: 217 PGLHFAGGQGVLVIAFCQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGILFDPLNL 276
Query: 157 ASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ DP E L++ EIK+ RLAMVA+L F IQAA TGKGP+
Sbjct: 277 SKDPVSFEELKVKEIKNGRLAMVAWLGFYIQAALTGKGPV 316
>gi|307110008|gb|EFN58245.1| hypothetical protein CHLNCDRAFT_34387 [Chlorella variabilis]
Length = 336
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 87/160 (54%), Gaps = 25/160 (15%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGVA------WQDAGKVELVEGS--SYLGQ 111
L R+ E EL+H RWAMLG LGA+ E L G A W + G +L G +YLG
Sbjct: 165 LDRYVELELLHARWAMLGALGAVVPELLQLAGSATFLEDRWWNVGYAKLTTGEELAYLGV 224
Query: 112 P-LPFS----LTTLIWIEVIVIGYIEYQRNAELD---------PVKRLYPGGY-FDPLGL 156
P L + + + + +V+++ EY R + P + YPGG+ FDPL L
Sbjct: 225 PGLRVAGGQGVAIIAFCQVLLMFGPEYARACGISALEPLGVFLPGDKNYPGGWLFDPLQL 284
Query: 157 ASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ D + E +++ EIK+ RLAMVA+L F QAA T +GP+
Sbjct: 285 SGDAERYEAMRVREIKNGRLAMVAWLGFAAQAAVTRQGPV 324
>gi|15487722|gb|AAL00904.1|AF398726_1 ASCAB9-A [Dubautia latifolia]
Length = 171
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 83/148 (56%), Gaps = 12/148 (8%)
Query: 65 FRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLP 114
++ ELIH RWAMLG G I EA W G + L++G++ Y G+ +
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGAL-LLDGNTLNYFGKNIH 59
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKH 173
+L + EV+++G EY R LD +L+ GG FDPLGLA DP + L++ EIK+
Sbjct: 60 INLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHHGGPFDPLGLAKDPDQFALLKVKEIKN 119
Query: 174 ARLAMVAFLIFGIQAAFTGKGPISFVAT 201
RLAM + F IQA TG+GP+ +A+
Sbjct: 120 GRLAMFSMFAFFIQAYVTGQGPVENLAS 147
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 81/150 (54%), Gaps = 17/150 (11%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALT---GVA-----WQDAGKVELVEGS-SYLGQP-- 112
+RE EL+H RWAMLG LG I E L GV W AG + L + S YLG P
Sbjct: 170 NYREAELLHARWAMLGALGCIFPEILAMNYGVGLEEPVWFKAGALVLNDKSIDYLGSPQL 229
Query: 113 -LPFSLTTLIWIEVIVIGYIEYQRNAELDP----VKRLYPGGY-FDPLGLASDPGKLENL 166
S+ + +V+++G E R + + P +++PGGY F+PL D L L
Sbjct: 230 VHASSIIAIAAAQVLLMGGAEAYRASGVAPNGEEFDKMHPGGYYFNPLKFGKDEADLAEL 289
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ EIK+ RLAM + L F IQAA TG GP+
Sbjct: 290 KVKEIKNGRLAMFSMLGFYIQAATTGNGPL 319
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 146 YPGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFL 182
YPG Y +D LGL+SDP N + AE+ HAR AM+ L
Sbjct: 150 YPGDYGWDALGLSSDPETFANYREAELLHARWAMLGAL 187
>gi|308809197|ref|XP_003081908.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
gi|63029305|gb|AAY27551.1| chloroplast Lhcq-like protein precursor [Ostreococcus tauri]
gi|116060375|emb|CAL55711.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
Length = 242
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 93/188 (49%), Gaps = 33/188 (17%)
Query: 43 TDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GVA------W 94
T G++ PL + L+R+RE EL+HGRWAMLG +GA E L GVA W
Sbjct: 54 TLCGDVGFDPLNLAAKSEDLERYRELELLHGRWAMLGVVGAAVPETLDRFGVANLGEPVW 113
Query: 95 QDAGKVELVEGSS--YLGQPLPFS---------LTTLIWIEVIVIGYIEYQRNA---ELD 140
G ++ + YLG FS + + +++++G EY R L+
Sbjct: 114 WKVGAAKMNSDIALDYLG----FSGFHIAGGSGIAVIAACQLVLMGGPEYARYVGINSLE 169
Query: 141 PV------KRLYPGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGK 193
PV + YPGG FDP + D + E ++ EIKH RLAM+A L IQA T +
Sbjct: 170 PVGVYLPGDKDYPGGAPFDPFKFSDDAEEFEKQKVMEIKHCRLAMIAALGCAIQAIVTRQ 229
Query: 194 GPISFVAT 201
GPI +A+
Sbjct: 230 GPIENLAS 237
>gi|403241542|gb|AFR32945.1| light-harvesting complex photosystem II, partial [Selaginella
martensii]
Length = 226
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 93/219 (42%), Gaps = 84/219 (38%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 47 GDYGFDPLGLGKDPAFLKW----------------------------------------- 65
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE E+IHGRWAM LG +A +GV W E + G PFS +L+
Sbjct: 66 --YREAEIIHGRWAMAAVLGIFVGQAWSGVPW--------FEAGAAPGAVAPFSFGSLLG 115
Query: 123 IEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS 158
+++++G++E +R + P R YPGG +FDPL LA
Sbjct: 116 TQLLLMGWVESKRYVDFFDPGTQALEWATPWSRTASNFGNSTGLQGYPGGKFFDPLRLAG 175
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQA 188
D KLE LQLAEIKHARLAM+A LIF +A
Sbjct: 176 EMKGGDYVPDFEKLERLQLAEIKHARLAMLAMLIFYFEA 214
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG Y FDPLGL DP L+ + AEI H R AM A L + A++G
Sbjct: 46 PGDYGFDPLGLGKDPAFLKWYREAEIIHGRWAMAAVLGIFVGQAWSG 92
>gi|15637137|gb|AAL04435.1| chlorophyll a/b binding protein [Beta vulgaris]
Length = 168
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 75/140 (53%), Gaps = 20/140 (14%)
Query: 66 RECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPFSL 117
RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 20 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 79
Query: 118 TTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQL 168
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP L++
Sbjct: 80 QSILAIWACQVILMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKV 136
Query: 169 AEIKHARLAMVAFLIFGIQA 188
EIK+ RLAM + F +QA
Sbjct: 137 KEIKNGRLAMSSMFGFFVQA 156
>gi|302808848|ref|XP_002986118.1| light-harvesting complex [Selaginella moellendorffii]
gi|302815978|ref|XP_002989669.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142640|gb|EFJ09339.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146266|gb|EFJ12937.1| light-harvesting complex [Selaginella moellendorffii]
Length = 259
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 93/219 (42%), Gaps = 84/219 (38%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 80 GDYGFDPLGLGKDPAFLKW----------------------------------------- 98
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM +G +A +G+ W E + G PFS +L+
Sbjct: 99 --YREAELIHGRWAMAAVVGIFVGQAWSGIPW--------FEAGAAPGAVAPFSFGSLLG 148
Query: 123 IEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS 158
+++++G++E +R + P R YPGG +FDPL LA
Sbjct: 149 TQLLLMGWVESKRYVDFFEPNTQAVEWATPWSRTAVNFANSTGLQGYPGGKFFDPLRLAG 208
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQA 188
D KL+ LQLAEIKHARLAMVA LIF +A
Sbjct: 209 SMKGGDYVPDFDKLQRLQLAEIKHARLAMVAMLIFYFEA 247
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG Y FDPLGL DP L+ + AE+ H R AM A + + A++G
Sbjct: 79 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 125
>gi|310696692|gb|ADP06401.1| putative chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 175
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 76/144 (52%), Gaps = 20/144 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 35 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 94
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW ++V+++G +E R A DP+ YPGG FDPLGLA DP
Sbjct: 95 LIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFA 151
Query: 165 NLQLAEIKHARLAMVAFLIFGIQA 188
L++ EIK+ RLAM + F +QA
Sbjct: 152 ELKVKEIKNGRLAMFSMFGFFVQA 175
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 76/147 (51%), Gaps = 20/147 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
Query: 114 PFSLTTL--IWI-EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R +DP LYPGG FDPLGLA DP
Sbjct: 151 LVHAQSILAIWASQVILMGAVEGYRIGGGPLGEVVDP---LYPGGSFDPLGLADDPEAFA 207
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFT 191
L++ EIK+ RLAM + F +QA T
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVT 234
>gi|162461245|ref|NP_001105375.1| light harvesting chlorophyll a/b binding protein6 precursor [Zea
mays]
gi|733458|gb|AAA64416.1| chlorophyll a/b-binding apoprotein CP24 precursor [Zea mays]
Length = 247
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 94/221 (42%), Gaps = 84/221 (38%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLGK +L++
Sbjct: 66 LPGDFGFDPLGLGKDPAFLKW--------------------------------------- 86
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
+RE ++IHGRWAM LG +A +G+ W +AG + PFS +L
Sbjct: 87 ----YREADVIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPT--------RIAPFSFGSL 134
Query: 121 IWIEVIVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGL 156
+ +++++G++E +R + P R YPGG +FDPL L
Sbjct: 135 LGTQLLLMGWVESKRWVDFFNPDSQAVEWATPWSRTAENFANFTGEQGYPGGKFFDPLAL 194
Query: 157 AS---------DPGKLENLQLAEIKHARLAMVAFLIFGIQA 188
A D KLE L+LAEIKHAR+AM+A L F +A
Sbjct: 195 AGTSRDGVYIPDVDKLERLKLAEIKHARIAMLAMLAFYFEA 235
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG + FDPLGL DP L+ + A++ H R AM A L + A++G
Sbjct: 67 PGDFGFDPLGLGKDPAFLKWYREADVIHGRWAMAAVLGIFVGQAWSG 113
>gi|302828616|ref|XP_002945875.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902596|gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300268690|gb|EFJ52870.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 243
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 96/227 (42%), Gaps = 77/227 (33%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
M G+ GFDPLGLGK E L++
Sbjct: 48 MAGNFGFDPLGLGKDAEALRW--------------------------------------- 68
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLP 114
+++ EL+H R AM G + LT W DAGKV + SS+ P
Sbjct: 69 ----YQQAELVHARTAMTAVAGILIPGLLTKAGALNVPEWYDAGKVAIE--SSF----AP 118
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL-DPVKRL-------------------YPGGYFDPL 154
F L+ +++ + G++E +R + P + YPGG FDPL
Sbjct: 119 FG--ALLAVQLFLTGFVEAKRWQDFKKPGSQAEKGSFLGFETAFAGTGDNGYPGGIFDPL 176
Query: 155 GLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
GL+ D KL + +L EIK+ RLAMVAFL F Q TGKGPI +A
Sbjct: 177 GLSKDADKLADWKLKEIKNGRLAMVAFLGFTAQKFATGKGPIDNLAA 223
>gi|13676408|dbj|BAB41193.1| type III chlorophyll a/b-binding protein [Amaranthus tricolor]
Length = 156
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 71/137 (51%), Gaps = 16/137 (11%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP-- 112
R R E+IHGRWAMLG LG I E L W AG EG YLG P
Sbjct: 18 RNRALEVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNPNL 77
Query: 113 -LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLENLQ 167
S+ ++ +V+++G +E R LD V LYPGG YFDPLGLA DP L+
Sbjct: 78 VHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVPFAELK 137
Query: 168 LAEIKHARLAMVAFLIF 184
+ EIK+ RLAM + F
Sbjct: 138 VKEIKNGRLAMFSMFGF 154
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 74/147 (50%), Gaps = 21/147 (14%)
Query: 67 ECELIHGRWAMLGTLGAIAVEALT--GVA----WQDAGKVELVEGSSYLGQPLPF-SLTT 119
+ EL H RWAMLG GA+A E LT GVA W DAG + + PL F +
Sbjct: 79 QAELQHARWAMLGVAGAVAPELLTKIGVADLPNWVDAGTYQYWAPAG----PLFFIQMAM 134
Query: 120 LIWIEVIVIGYIEYQRNAELDPV----------KRLYPGGYFDPLGLASDPGKLENLQLA 169
W EV ++ + DP+ YPGG FD LG A DP K + L+L
Sbjct: 135 FNWAEVRRWQDMKNPGSMNTDPLFGYNSNDTNTDVGYPGGLFDKLGYAKDPAKAKELKLK 194
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAMVAFL Q TG+GP+
Sbjct: 195 EIKNGRLAMVAFLGICAQYVQTGQGPV 221
>gi|13676402|dbj|BAB41190.1| type I chlorophyll a/b-binding protein a [Amaranthus tricolor]
Length = 154
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 74/138 (53%), Gaps = 22/138 (15%)
Query: 66 RECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPFSL 117
RE E+IH RWAMLG LG I E A GV W AG EG YLG P
Sbjct: 20 RELEVIHCRWAMLGALGCIFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPTLIHA 79
Query: 118 TTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQL 168
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP L++
Sbjct: 80 QSILAIWACQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPDAFAELKV 136
Query: 169 AEIKHARLAMVAFLIFGI 186
EIK+ RLAM F +FG
Sbjct: 137 KEIKNGRLAM--FSMFGF 152
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 80/140 (57%), Gaps = 17/140 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL----TGVA---WQDAGKVELVEGS-SYLGQP- 112
+R+RE ELIH RWAMLG LG I E L T +A W AG +G +YLG
Sbjct: 84 FKRYRELELIHARWAMLGALGCITPELLANNGTPIAEPVWFKAGAQIFQDGGLNYLGNEN 143
Query: 113 --LPFSLTTLIWIEVIVIGYIE-YQRNA--ELDPVKRLYPGG-YFDPLGLASDPGKLENL 166
S+ + ++VI++G +E Y+ N + + +LYPGG +FDPLGLA DP L
Sbjct: 144 LVHAQSIIVTLLVQVILMGTVEGYRVNGGPAGEGLDKLYPGGDFFDPLGLADDPDTFAEL 203
Query: 167 QLAEIKHARLAMVAFLIFGI 186
++ EIK+ RLAM F +FG
Sbjct: 204 KVKEIKNGRLAM--FSMFGF 221
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 85/217 (39%), Gaps = 81/217 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGL + E L++
Sbjct: 72 GDNGFDPLGLAEDPENLKW----------------------------------------- 90
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPFS 116
F + EL++GRWAMLG G + E T + W DAGK E SS
Sbjct: 91 --FIQAELVNGRWAMLGVAGMLLPEVFTSIGILNVPKWYDAGKSEYFASSS--------- 139
Query: 117 LTTLIWIEVIVIGYIEYQR-----------------NAELDPVKRLYPGGYFDPLGLASD 159
TL IE I+ Y+E +R + L P K YPGG F+PL A
Sbjct: 140 --TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPNKCGYPGGIFNPLNFA-- 195
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E + E+ + RLAM+AFL F +Q TGKGP
Sbjct: 196 --PTEEAKEKELANGRLAMLAFLGFIVQHNVTGKGPF 230
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 86/217 (39%), Gaps = 81/217 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGL + E L++
Sbjct: 70 GDNGFDPLGLAEDPENLKW----------------------------------------- 88
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPFS 116
+ + EL++GRWAMLG G + E T + W DAGK E SS
Sbjct: 89 --YIQAELVNGRWAMLGVAGMLLPEVFTSIGILNVPKWYDAGKAEYFASSS--------- 137
Query: 117 LTTLIWIEVIVIGYIEYQR-----------------NAELDPVKRLYPGGYFDPLGLASD 159
TL IE I+ Y+E +R N L P + YPGG F+PL A+
Sbjct: 138 --TLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKNYSLPPNECGYPGGIFNPLNFAAT 195
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E + E+ + RLAM+AFL F +Q TGKGP
Sbjct: 196 ----EEAKEKELANGRLAMLAFLGFIVQHNVTGKGPF 228
>gi|159480944|ref|XP_001698542.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
gi|158282282|gb|EDP08035.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
Length = 237
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 96/230 (41%), Gaps = 77/230 (33%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGL PT + F
Sbjct: 27 GDMGFDPLGLFDPTNG--------------------------------------SAGFMS 48
Query: 63 QRF-RECELIHGRWAMLGTLGAIAVEAL---------TGVAWQDAGKVELVEGSSYLGQP 112
QR+ E++HGRWAMLG G +A E L TG+ W G + V G P
Sbjct: 49 QRWLHTAEVVHGRWAMLGAAGCLAPEYLAHEKVIPKATGLLWFKTGFLPPVSAGFDYGLP 108
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAELD-------------PVKRL----------YPGG 149
+ T L I++ ++G +E R AEL P+ RL YPGG
Sbjct: 109 V----TALFLIQMGLMGTVESLRWAELSNPGSLASNPLVPQPLARLIGTTRLGGGAYPGG 164
Query: 150 -YFDPLGL-ASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
F+PLGL A+ P + Q +EI+H RLAMVA L + QA TGKGP +
Sbjct: 165 LMFNPLGLGATRPAVMREYQQSEIRHGRLAMVACLGYAAQAVVTGKGPYT 214
>gi|358346846|ref|XP_003637475.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503410|gb|AES84613.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 294
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 103/221 (46%), Gaps = 53/221 (23%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL L N +++ + G DS P L+ +
Sbjct: 80 LPGDFGFDPLGL------YNGGLIILAGNTNDHNINQSFGC--DSTASDPESLK-----W 126
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+Q EL+H RWAMLG G E LT + +W AG+ E +
Sbjct: 127 NVQ----AELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDT-------- 174
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+I IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 175 ---TTLFIVELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 231
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P KL+ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 232 GSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 272
>gi|13676406|dbj|BAB41192.1| type I chlorophyll a/b-binding protein b [Amaranthus tricolor]
Length = 154
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 75/142 (52%), Gaps = 22/142 (15%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 16 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 75
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +VI++G +E R A +DP LYPGG FDPLGLA DP
Sbjct: 76 LIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPDAFA 132
Query: 165 NLQLAEIKHARLAMVAFLIFGI 186
L++ EIK+ RLAM F +FG
Sbjct: 133 ELKVKEIKNGRLAM--FSMFGF 152
>gi|145343493|ref|XP_001416356.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144576581|gb|ABO94649.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 203
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 79/155 (50%), Gaps = 26/155 (16%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFS-LTTL 120
L+ + + EL HGRWAMLG GA A E LT + + E SY G F+ TTL
Sbjct: 34 LKWYVQAELQHGRWAMLGVAGAAAPEILTNMGISNLPNWH--EAPSYDGY---FTDATTL 88
Query: 121 IWIEVIVIGYIEYQR------------------NAELDPVKRLYPGGYFDPLGLASDPGK 162
W++++++ + E +R NA+L YPGG FDPLG A G
Sbjct: 89 FWVQMLMMNWAEVRRWQDIRKPGSVSEDPTPFSNAKLPAGVVGYPGGIFDPLGYAK--GD 146
Query: 163 LENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
L+ L+ EI + RLAMVAF +Q TG GP++
Sbjct: 147 LKTLKAKEIANGRLAMVAFAGIMVQYDHTGVGPVA 181
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 87/160 (54%), Gaps = 24/160 (15%)
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV--------AWQDAGKVELVEGS-SYLG- 110
LQ++ E++H RWAML ++GA+ E L + W G +L + YLG
Sbjct: 146 ALQKYFNFEILHARWAMLASVGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGI 205
Query: 111 QPLPFS----LTTLIWIEVIVIGYIEYQRNAELDPVKRL---------YPGG-YFDPLGL 156
Q L F+ + + + +++ EY R ++ ++ L YPGG FDPL L
Sbjct: 206 QGLHFAGSQGVVVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNL 265
Query: 157 ASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++DP E L++ EIK+ RLAMVA+L F +QAA TGKGP+
Sbjct: 266 SNDPEAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPV 305
>gi|302849997|ref|XP_002956527.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
gi|300258225|gb|EFJ42464.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
Length = 238
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 76/143 (53%), Gaps = 20/143 (13%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GVA-----WQDAGKVELVEGS-SYLGQ-- 111
+R+RE ELIH RWAMLG LG + + L+ GV W AG EG YLG
Sbjct: 80 FKRYRELELIHARWAMLGALGCVTPKLLSKNGVQFSEALWFKAGAQIFQEGGLDYLGNLS 139
Query: 112 -PLPFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ + +VI++G +E Y+ N LDP LYPG FDPLGLA DP
Sbjct: 140 LVHAQNIVATLACQVILMGLVEGYRVNGGPAGEGLDP---LYPGKSFDPLGLADDPDTFA 196
Query: 165 NLQLAEIKHARLAMVAFLIFGIQ 187
L++ EIK+ RLAM + F +Q
Sbjct: 197 ELKVKEIKNGRLAMFSMFGFFVQ 219
>gi|357497757|ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
gi|355494182|gb|AES75385.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
Length = 229
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 74/149 (49%), Gaps = 26/149 (17%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGS-SYLGQPLPFSLTTL 120
+ RE E+IH RWAM W A EG YLG P ++
Sbjct: 75 FAKNRELEVIHSRWAMFDR-------------WFKARSQIFSEGGLDYLGNPSLVHAQSI 121
Query: 121 --IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEI 171
IW +VI++G +E R A +DP LYPGG FDPLGLA DP L++ EI
Sbjct: 122 LAIWACQVILMGAVEGYRIAGGPLGEVIDP---LYPGGSFDPLGLADDPEAFVELKVKEI 178
Query: 172 KHARLAMVAFLIFGIQAAFTGKGPISFVA 200
K+ RLAM + F +QA TGKGP+ +A
Sbjct: 179 KNGRLAMFSMFGFFVQAIVTGKGPLENLA 207
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 95/219 (43%), Gaps = 79/219 (36%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLG E L+++
Sbjct: 84 GDFGFDPLGLGSDPESLKWN---------------------------------------- 103
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFS 116
+ EL+H RWAMLG G E LT + +W AG+ E +
Sbjct: 104 ---AQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDT---------- 150
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGLAS 158
TTL IE+++IG+ E +R A++ DP+ +L YPGG +FDPLG S
Sbjct: 151 -TTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 209
Query: 159 -DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
P K++ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 210 GSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 248
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 85/159 (53%), Gaps = 24/159 (15%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEA--LTGV------AWQDAGKVELV-EGSSYLGQP 112
++ E++H RWAML LGA+ E LTG W G +L E YLG P
Sbjct: 148 FDKYFNFEILHARWAMLAALGALIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIP 207
Query: 113 -LPFS----LTTLIWIEVIVIGYIEYQRNAELDPVKRL---------YPGG-YFDPLGLA 157
L + + + +V+++ EY R ++ ++ L YPGG FDPL L+
Sbjct: 208 GLHVAGSQGVIVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLS 267
Query: 158 SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
DP E+L++ EIK+ RLAMVA+L F QAAFTGKGP+
Sbjct: 268 EDPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPV 306
>gi|308811128|ref|XP_003082872.1| putative chloroplast lycopene beta cyclase precursor (ISS)
[Ostreococcus tauri]
gi|116054750|emb|CAL56827.1| putative chloroplast lycopene beta cyclase precursor (ISS)
[Ostreococcus tauri]
Length = 1352
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 84/159 (52%), Gaps = 20/159 (12%)
Query: 59 VFGLQRFRECELIHGRWAMLGTLGAIAVEALT--------GVAWQDAGKV-ELVEGS--S 107
V + R+R ELIHGRWAML +G + E L G W V + ++G +
Sbjct: 1195 VSDIARYRARELIHGRWAMLACIGVLVPEFLAQNSIFGSPGEHWWSTRIVNDPLDGFQLT 1254
Query: 108 YLGQPLPFSLTTLIWIEVIVIGYIEYQRN-----AELDPVKRLYPGGY-FDPLGLASDPG 161
YLG+ +P+ L L I + ++ E RN A + +LYPGG FDPLGLA+
Sbjct: 1255 YLGENIPWGLFWLPLIHLPLMFVAESLRNGTYELAAFKDLDKLYPGGRLFDPLGLAAGQT 1314
Query: 162 K--LENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISF 198
+ L L+ EI+HARLAM AF +F I+ A G GP F
Sbjct: 1315 EEDLNILKTIEIQHARLAMCAFSVFLIEGA-AGSGPFDF 1352
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 29/160 (18%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFS---LT 118
L+ +R+ EL+H RWAMLG G + E + V E P PF+ +
Sbjct: 67 LRWYRQSELVHARWAMLGVAGVLVQEVVKP-------DVYFYEAGLPQNLPEPFTNVNMG 119
Query: 119 TLIWIEVIVIGYIEYQR--------NAELDPV---------KRLYPGGYFDPLGLASDPG 161
L+ E I++ ++E +R + DP+ + YPGG FDPLG + G
Sbjct: 120 GLLAWEFILMHWVEVRRWQDYKNFGSVNEDPIFKGNKVPNPEMGYPGGIFDPLGFSK--G 177
Query: 162 KLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
L+ LQ EIK+ RLAMVA++ F +QA TGKGP++ ++
Sbjct: 178 NLKELQTKEIKNGRLAMVAYMGFVLQAQATGKGPLAALSA 217
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 85/159 (53%), Gaps = 24/159 (15%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL--TGV------AWQDAGKVELV-EGSSYLGQP 112
++ E++H RWAML LGA+ E L TG W G +L E YLG P
Sbjct: 151 FDKYFNFEILHARWAMLAALGALIPEVLDLTGAFHFAEPVWWRVGYSKLQGETLDYLGIP 210
Query: 113 -LPFS----LTTLIWIEVIVIGYIEYQRNAELDPVKRL---------YPGG-YFDPLGLA 157
L + + + +V+++ EY R ++ ++ L YPGG FDPL L+
Sbjct: 211 GLHVAGSQGVIVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLS 270
Query: 158 SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
DP E+L++ EIK+ RLAMVA+L F QAAFTGKGP+
Sbjct: 271 EDPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPV 309
>gi|222618804|gb|EEE54936.1| hypothetical protein OsJ_02493 [Oryza sativa Japonica Group]
Length = 207
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 74/138 (53%), Gaps = 20/138 (14%)
Query: 75 WAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-I 123
WAMLG LG + E A GV W AG EG YLG P ++ IW +
Sbjct: 46 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAV 105
Query: 124 EVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLA 177
+V+++G +E R A +DP LYPGG FDPLGLA DP L++ EIK+ RLA
Sbjct: 106 QVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 162
Query: 178 MVAFLIFGIQAAFTGKGP 195
M + F +QA TGKGP
Sbjct: 163 MFSMFGFFVQAIVTGKGP 180
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 81/169 (47%), Gaps = 35/169 (20%)
Query: 52 PLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEG 105
PL E L+ + + EL HGRWAMLG GA A E LT + W DA +
Sbjct: 58 PLNLGKEPKDLEWYVQAELQHGRWAMLGVAGAAAPEILTKMGISDLPNWHDAPNYQ---- 113
Query: 106 SSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPG 148
Y TTL W++++++ + E +R ++ DP +L YPG
Sbjct: 114 -GYF-----TDATTLFWVQMLMMNWAEVRRWQDMRKPGSVNEDPAFSGNKLPSGIVGYPG 167
Query: 149 GYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
G FDPLG A G L L+ EI + RLAMVAF +Q TG GP++
Sbjct: 168 GIFDPLGYAK--GDLNKLKAKEIANGRLAMVAFAGIMVQYDHTGVGPVA 214
>gi|384247025|gb|EIE20513.1| light-harvesting complex I protein [Coccomyxa subellipsoidea C-169]
Length = 259
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 84/165 (50%), Gaps = 33/165 (20%)
Query: 62 LQRFRECELIHGRWAMLGTLGAI--AVEALTGVA----WQDAGKVELVEGSSYLGQPLPF 115
L+ F++ EL+HGR AM G + AV GV W DAG V + ++ PF
Sbjct: 80 LKWFQQAELVHGRTAMTAVAGILFPAVATKAGVVNIPQWYDAGSVWVQNNPNF-----PF 134
Query: 116 SLTTLIWIEVIVIGYIEYQR------------------NAELDPVKRLYPGG-YFDPLGL 156
+ L++I++I+ G++E +R + V YPGG FDP GL
Sbjct: 135 A--ALLFIQIILTGWVETKRWLDFKNPGSQADGSFLGVTDDFKGVANGYPGGKLFDPFGL 192
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
+ G+L+ Q EIK+ RLAMVAFL F Q A TGKGPI +A
Sbjct: 193 SRGSEGQLQKYQENEIKNGRLAMVAFLGFIAQHAATGKGPIDNLA 237
Score = 35.8 bits (81), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVA 180
PG + FDPL L SDP L+ Q AE+ H R AM A
Sbjct: 63 PGDFGFDPLSLGSDPQLLKWFQQAELVHGRTAMTA 97
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 85/217 (39%), Gaps = 81/217 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGL + E L++
Sbjct: 71 GDNGFDPLGLAEDPESLKW----------------------------------------- 89
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPFS 116
+ + EL++GRWAMLG G + E LT W DAGKVE SS
Sbjct: 90 --YVQAELVNGRWAMLGVAGMLIPEVLTSFGFIDVPKWYDAGKVEYFASSS--------- 138
Query: 117 LTTLIWIEVIVIGYIEYQR-----------------NAELDPVKRLYPGGYFDPLGLASD 159
TL IE I+ Y+E +R N L P + YPGG F+PL +
Sbjct: 139 --TLFVIEFILFHYVELRRWQDIKYPGSVNQDPVFKNYSLPPNEVGYPGGIFNPLNFSPS 196
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E E+ + RLAM+AFL F +Q TGKGP
Sbjct: 197 MEAKEK----ELANGRLAMLAFLGFVVQHNVTGKGPF 229
>gi|125590602|gb|EAZ30952.1| hypothetical protein OsJ_15029 [Oryza sativa Japonica Group]
Length = 236
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 80/164 (48%), Gaps = 48/164 (29%)
Query: 69 ELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQP---LPFSLTTLIWIEV 125
LIHGRWAM LG +A +GV W +AG QP PFS +L+ ++
Sbjct: 80 SLIHGRWAMAAVLGIFVGQAWSGVPWFEAG-----------AQPEAIAPFSFGSLLGTQL 128
Query: 126 IVIGYIEYQRNAEL-----------DPVKRL------------YPGG-YFDPLGLAS--- 158
+++G++E +R + P R YPGG +FDPLGL
Sbjct: 129 LLMGWVESKRWVDFFNPDSQAVEWATPWSRTAENFSNATGEQGYPGGKFFDPLGLGGETR 188
Query: 159 ------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KL+ L+LAEIKHARLAM+A LIF +A GK P+
Sbjct: 189 DGVYIPDTDKLDRLKLAEIKHARLAMLAMLIFYFEAG-QGKTPL 231
>gi|303288868|ref|XP_003063722.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
gi|226454790|gb|EEH52095.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
Length = 1523
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 80/163 (49%), Gaps = 28/163 (17%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--------ALTGVAWQDAGKVELVEGS------S 107
L + RE ELIHGRWAML +G + E G W + EG +
Sbjct: 1363 LTKLRERELIHGRWAMLAAVGVLTPELTAKLGVFGAPGSHWWNTAINFPTEGGLAGAELT 1422
Query: 108 YLGQPLPFSLTTLIWI--------EVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLAS 158
YLG+ +PF L L I E++ G E +R LD R+YPGG FDPLG+
Sbjct: 1423 YLGETIPFGLFWLPIIHLPVFFVAEMLRTGKYEVERFRGLD---RMYPGGSLFDPLGIGR 1479
Query: 159 --DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFV 199
D +L+ L+ EI H RLAM A F ++AA G GP+ ++
Sbjct: 1480 DIDETELKVLKTIEINHCRLAMTASFGFIVEAALWGAGPLDWL 1522
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 90/215 (41%), Gaps = 68/215 (31%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLG E L++
Sbjct: 21 GDFGFDPLGLGSDPELLKW----------------------------------------- 39
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
F + EL+H RWAMLG G EALT + + Y P TTL
Sbjct: 40 --FVQAELVHCRWAMLGAAGIFIPEALTKAGILNTPSWNVAGDQQYFADP-----TTLFV 92
Query: 123 IEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL--ASDPGK 162
IE+I+ + E +R A++ DPV +L YPGG +FDPLG D K
Sbjct: 93 IELILFAWAEGRRWADIVNPGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTKDAKK 152
Query: 163 LENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
L+ L+ EIK+ RLAM+A L +QA +T GPI
Sbjct: 153 LKELRTKEIKNGRLAMLAVLGAVVQANYTHTGPID 187
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 94/219 (42%), Gaps = 79/219 (36%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLG E L++ S
Sbjct: 86 GDFGFDPLGLGSDPETLKWMVQS------------------------------------- 108
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFS 116
E++H RWAMLG G E LT + +W AG++E
Sbjct: 109 ------EIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDK---------- 152
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGLAS 158
TTL +E+I IG+ E +R A++ DP+ +L YPGG +FDPLG S
Sbjct: 153 -TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 211
Query: 159 -DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
P K++ L+ EIK+ RLAM+A + QA +TG GPI
Sbjct: 212 GSPDKIKELRTKEIKNGRLAMLAVMGAWFQAIYTGTGPI 250
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 73/158 (46%), Gaps = 38/158 (24%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPF 115
L+ + + EL++GRWAMLG G + E LT W DAGKVE SS
Sbjct: 87 LKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFIDVPKWYDAGKVEYFASSS-------- 138
Query: 116 SLTTLIWIEVIVIGYIEYQR-----------------NAELDPVKRLYPGGYFDPLGLAS 158
TL IE I+ Y+E +R N L P + YPGG F+PL +
Sbjct: 139 ---TLFVIEFILFHYVELRRWQDIKYPGSVNQDPVFKNYSLPPNEVGYPGGIFNPLNFSP 195
Query: 159 DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E E+ + RLAM+AFL F +Q TGKGP
Sbjct: 196 SMEAKEK----ELANGRLAMLAFLGFVVQHNVTGKGPF 229
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 94/219 (42%), Gaps = 79/219 (36%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLG E L++ S
Sbjct: 85 GDFGFDPLGLGSDPETLKWMVQS------------------------------------- 107
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFS 116
E++H RWAMLG G E LT + +W AG++E
Sbjct: 108 ------EIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDK---------- 151
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGLAS 158
TTL +E+I IG+ E +R A++ DP+ +L YPGG +FDPLG S
Sbjct: 152 -TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 210
Query: 159 -DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
P K++ L+ EIK+ RLAM+A + QA +TG GPI
Sbjct: 211 GSPDKIKELRTKEIKNGRLAMLAVMGAWFQAIYTGTGPI 249
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 95/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLG E L+++
Sbjct: 81 LPGDFGFDPLGLGSDPESLRWNV------------------------------------- 103
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + +W AG+ E +
Sbjct: 104 ------QAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDT-------- 149
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E++ IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 150 ---TTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 206
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P KL+ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 207 GSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 247
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 97/221 (43%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLG E L+++
Sbjct: 75 LPGDFGFDPLGLGSDPESLRWNV------------------------------------- 97
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + +W AG+ + +
Sbjct: 98 ------QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQQYFTDT-------- 143
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL IE+I+IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 144 ---TTLFIIELILIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 200
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ P K++ L+ EIK+ RLAM+A + QA +TG GPI
Sbjct: 201 GTGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPI 241
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 96/221 (43%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDP GLG E L+++
Sbjct: 74 LPGDFGFDPFGLGSDPESLRWNV------------------------------------- 96
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + +W AG+ + +
Sbjct: 97 ------QAELVHCRWAMLGAAGIFIPEFLTKIGILSTPSWYTAGEQQYFTDT-------- 142
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL IE+I+IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 143 ---TTLFIIELILIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 199
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P KL+ L+ EIK+ RLAM+A + QA +TG GPI
Sbjct: 200 GSGSPEKLKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPI 240
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 95/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLG E L+++
Sbjct: 81 LPGDFGFDPLGLGSDPETLRWNV------------------------------------- 103
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + +W AG+VE +
Sbjct: 104 ------QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYSAGEVEYFTDT-------- 149
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+ IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 150 ---TTLFIVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 206
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P K++ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 207 GSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 247
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 95/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLG E L+++
Sbjct: 81 LPGDFGFDPLGLGSDPESLRWNV------------------------------------- 103
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + +W AG+ E +
Sbjct: 104 ------QAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDT-------- 149
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E++ IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 150 ---TTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 206
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P KL+ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 207 GSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 247
>gi|12240089|gb|AAG49561.1| light-harvesting chlorophyll-binding protein [Citrus reticulata]
Length = 156
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 76/141 (53%), Gaps = 22/141 (15%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P
Sbjct: 21 FAKNREPEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 80
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G++E R LDP LYPGG FDPLGLA P +
Sbjct: 81 LIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDP---LYPGGAFDPLGLADGPDQFA 137
Query: 165 NLQLAEIKHARLAMVAFLIFG 185
L++ E+K+ RLAM F +FG
Sbjct: 138 ELKVKELKNGRLAM--FSMFG 156
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 95/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLG E L+++
Sbjct: 81 LPGDFGFDPLGLGSDPETLRWNV------------------------------------- 103
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + +W AG+VE +
Sbjct: 104 ------QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYSAGEVEYFTDT-------- 149
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+ IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 150 ---TTLFIVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 206
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P K++ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 207 GSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 247
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 95/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL D DSL N+
Sbjct: 69 LPGDFGFDPLGLSS-------DPDSLKWNV------------------------------ 91
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + +W AG+ E
Sbjct: 92 ------QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDK-------- 137
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+I+IG+ E +R A++ DPV +L YPGG +FDPLG
Sbjct: 138 ---TTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGW 194
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P KL+ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 195 GSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 235
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 74/139 (53%), Gaps = 20/139 (14%)
Query: 75 WAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IWI- 123
+AMLG LG + E A TGV W AG EG YLG P ++ IW
Sbjct: 92 FAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAS 151
Query: 124 EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLA 177
+V+++G IE R LDP LYPGG FDPLGLA DP L++ EIK+ RLA
Sbjct: 152 QVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLA 208
Query: 178 MVAFLIFGIQAAFTGKGPI 196
M + F +QA TGKGPI
Sbjct: 209 MFSMFGFFVQAIVTGKGPI 227
>gi|459020|gb|AAA16605.1| light harvesting chlorophyll a/b binding protein of PSII, partial
[Euglena gracilis]
Length = 322
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 68/128 (53%), Gaps = 16/128 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAG-KVELVEGSSYLGQP 112
L R+RE E+IH RWAMLG LG + E L G W AG ++ +G +YLG P
Sbjct: 194 LARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNP 253
Query: 113 LPFSLTTLIWI---EVIVIGYIEYQRNAEL----DPVKRLYPGGYFDPLGLASDPGKLEN 165
+++ + ++G +E R D + RLYPGG FDPLGLA+DP
Sbjct: 254 SLIHAQSVVLTFLSTLAIMGAVEGYRYGGGWPLGDDLDRLYPGGPFDPLGLANDPDAFAE 313
Query: 166 LQLAEIKH 173
L++ E+K+
Sbjct: 314 LKVKEVKN 321
>gi|424512849|emb|CCO66433.1| predicted protein [Bathycoccus prasinos]
Length = 286
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 33/155 (21%)
Query: 68 CELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
E+IHGRWAMLG GA A E + G V W G + + P T L
Sbjct: 111 AEVIHGRWAMLGVAGATAPETMKGFIPDSTAVVWFKNGIIPAQGSYDFWAPP-----TAL 165
Query: 121 IWIEVIVIGYIEYQRNAEL-DPVKRL------------------YPGGYFDPLGLASDPG 161
W+ V ++ ++E R E +P R YPGG F+P+G+ +
Sbjct: 166 FWVMVCMMNFVEINRLTEYANPGFRTKQSLAGLEKGMGGTGNPAYPGGSFNPMGMGKN-- 223
Query: 162 KLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
++ +++ EIK+ RLAM+AF +QA TG+GP+
Sbjct: 224 DMDAMKVKEIKNGRLAMMAFFGIMVQAIITGEGPV 258
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 85/217 (39%), Gaps = 81/217 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGL + E L++
Sbjct: 71 GDNGFDPLGLAEDPESLKW----------------------------------------- 89
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPFS 116
+ + EL++GRWAMLG G + E LT + W DAGKVE SS
Sbjct: 90 --YVQAELVNGRWAMLGVAGMLIPEVLTSIGLINVPKWYDAGKVEYFASSS--------- 138
Query: 117 LTTLIWIEVIVIGYIEYQR-----------------NAELDPVKRLYPGGYFDPLGLASD 159
TL IE I+ Y+E +R L P + YPGG F+PL +
Sbjct: 139 --TLFVIEFILFHYVELRRWQDIKYPGSVNQDPLFKQYSLPPNEVGYPGGIFNPLNFSPS 196
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E E+ + RLAM+AFL F +Q TGKGP
Sbjct: 197 MEAKEK----ELANGRLAMLAFLGFVVQHNVTGKGPF 229
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 82/154 (53%), Gaps = 28/154 (18%)
Query: 69 ELIHGRWAMLGTLGAIAVEALT--GVA------WQDAGKVELVEGSS--YLGQPLPFSLT 118
E++H RWAML LG + E L GV W G +L +G + YLG P F +
Sbjct: 74 EILHCRWAMLAALGVVVPELLDLFGVVHFVEPVWWKVGYAKL-QGDTLDYLGIP-GFRIA 131
Query: 119 TLIWIEVIVIGYI------EYQRNAELDPVKRL---------YPGG-YFDPLGLASDPGK 162
+ VI I EY R ++ ++ L YPGG FDPLGL+ DP
Sbjct: 132 GGQGVIVIAICQALLMVGPEYARYCGIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVA 191
Query: 163 LENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E+L++ EIK+ RLAMVA+L F IQAA TGKGPI
Sbjct: 192 FEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPI 225
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 83/161 (51%), Gaps = 26/161 (16%)
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEAL--------TGVAWQDAGKVELVEGS-SYLGQ 111
Q+F E++H RWAML +LGA+ E L T W G +L + YLG
Sbjct: 154 AFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGI 213
Query: 112 P-LPFS-----LTTLIWIEVIVIGYIEYQRNAELDPVKRL---------YPGGY-FDPLG 155
P L + + I ++++G EY R ++ ++ L YPGG FDPL
Sbjct: 214 PGLHLAGSQGVIVIAICQAILMVG-PEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLN 272
Query: 156 LASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L+ D E L++ EIK+ RLAMVA+L F QAA TGKGP+
Sbjct: 273 LSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPV 313
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 81/155 (52%), Gaps = 25/155 (16%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLI 121
L+ F + EL+H RWAMLG G EALT + + + + Y TTL
Sbjct: 105 LKWFVQAELVHCRWAMLGAAGIFIPEALTKMGILNTPSWTVAGDADYFTDK-----TTLF 159
Query: 122 WIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL--ASDPG 161
IE+I+ + E +R A++ DPV +L YPGG +FDPLG SD
Sbjct: 160 VIELILFAWAEGRRWADIVNPGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTSDAA 219
Query: 162 KLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
KL++L+ EIK+ RLAM+A L +QA +T GPI
Sbjct: 220 KLKDLRTREIKNGRLAMLAVLGAIVQANYTHTGPI 254
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 85/217 (39%), Gaps = 81/217 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGL + E L++
Sbjct: 64 GDNGFDPLGLAEDPESLKW----------------------------------------- 82
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPFS 116
+ + EL++GRWAMLG G + E LT + W DAGKVE SS
Sbjct: 83 --YVQAELVNGRWAMLGVAGMLIPEVLTSIGLINVPKWYDAGKVEYFASSS--------- 131
Query: 117 LTTLIWIEVIVIGYIEYQR-----------------NAELDPVKRLYPGGYFDPLGLASD 159
TL IE I+ Y+E +R L P + YPGG F+PL +
Sbjct: 132 --TLFVIEFILFHYVELRRWQDIKYPGSVNQDPLFKQYSLPPNEVGYPGGIFNPLNFSPS 189
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E E+ + RLAM+AFL F +Q TGKGP
Sbjct: 190 MEAKEK----ELANGRLAMLAFLGFVVQHNVTGKGPF 222
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 96/221 (43%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL E L+++
Sbjct: 82 LPGDFGFDPLGLASDPESLRWN-------------------------------------- 103
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
++ EL+H RWAMLG G E LT + +W AG+ E +
Sbjct: 104 -----QQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDT-------- 150
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+++IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 151 ---TTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 207
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P K++ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 208 GSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 248
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 96/221 (43%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDP GLG E L+++
Sbjct: 65 LPGDFGFDPWGLGSDPESLRWNV------------------------------------- 87
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + +W AG+ E +
Sbjct: 88 ------QAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDT-------- 133
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+I+IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 134 ---TTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGY 190
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ P KL+ L+ EIK+ RLAM+A + QA +TG GPI
Sbjct: 191 GNGSPEKLKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPI 231
>gi|157965829|gb|ABW06951.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 556
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 87/214 (40%), Gaps = 73/214 (34%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGDRGFDPL LGK D N
Sbjct: 191 LVGDRGFDPLNLGK------------DPN------------------------------- 207
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
L+RFR E+ HGR AML GA+ E L GVAW DA K P P +LTT
Sbjct: 208 ALERFRVSEVFHGRLAMLAFAGALVPELLRGVAWYDAVKT-----------PDPITLTTF 256
Query: 121 IWIEVIVIGYIE----------YQRNAELDP--VKRLYPGGYFDPLGLASDPGKLENLQL 168
+ + G IE ++ E +P YPG DP +S+ KL+
Sbjct: 257 LLALAVATGPIELWRYDGRFPAWEEGEEPEPKVADIAYPGA--DPFEWSSEEAKLK---- 310
Query: 169 AEIKHARLAMVAFLIFGIQAAFTGKGPISFVATF 202
E+K+ RLAM+A L F Q A TG PI + F
Sbjct: 311 -ELKNGRLAMIAVLGFYFQHAKTGASPIENLVAF 343
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 86/214 (40%), Gaps = 73/214 (34%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+VGDRGFDPL LGK P
Sbjct: 392 LVGDRGFDPLNLGK----------------------------------NPN--------- 408
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
L+RFR E+ HGR AML GA+ E L GVAW DA K P P +LTT
Sbjct: 409 ALERFRVSEVFHGRLAMLAFAGALVPELLRGVAWYDAVKT-----------PDPITLTTF 457
Query: 121 IWIEVIVIGYIE----------YQRNAELDP--VKRLYPGGYFDPLGLASDPGKLENLQL 168
+ + G IE ++ E +P YPG DP +S+ KL+
Sbjct: 458 LLALAVATGPIELWRYDGRFPAWEEGEEPEPKVANIAYPGA--DPFEWSSEEAKLK---- 511
Query: 169 AEIKHARLAMVAFLIFGIQAAFTGKGPISFVATF 202
E+K+ RLAM+A L F Q A TG PI + F
Sbjct: 512 -ELKNGRLAMIAVLGFYFQHAKTGASPIENLVAF 544
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 72/154 (46%), Gaps = 30/154 (19%)
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
L+RFR E+ HGR AML GA+ E L GVAW DA + P P +LTT
Sbjct: 7 ALERFRVSEVFHGRLAMLAFAGALVPELLRGVAWYDA-----------VHTPDPITLTTF 55
Query: 121 IWIEVIVIGYIE----------YQRNAELDP--VKRLYPGGYFDPLGLASDPGKLENLQL 168
+ + G IE ++ E +P YPG DP +S+ KL+
Sbjct: 56 LLVLAGATGPIELWRYDGRFPAWEEGEEPEPKVADIAYPGA--DPFEWSSEEAKLK---- 109
Query: 169 AEIKHARLAMVAFLIFGIQAAFTGKGPISFVATF 202
E+K+ RLAM+A L F Q A TG PI + F
Sbjct: 110 -ELKNGRLAMIAVLGFYFQHAKTGASPIENLVAF 142
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 56/127 (44%), Gaps = 23/127 (18%)
Query: 69 ELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGK-----VELVEGSSYLGQPLPFS 116
EL +GR AM+ LG A TG VA+ + G + G P P +
Sbjct: 110 ELKNGRLAMIAVLGFYFQHAKTGASPIENLVAFINDGANITTAMFATAGKKVRPTPAPAA 169
Query: 117 LTT--LIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHA 174
+T L+WI + E+ N L FDPL L DP LE +++E+ H
Sbjct: 170 ASTERLLWIPGVKAP--EHLNNT-------LVGDRGFDPLNLGKDPNALERFRVSEVFHG 220
Query: 175 RLAMVAF 181
RLAM+AF
Sbjct: 221 RLAMLAF 227
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 23/127 (18%)
Query: 69 ELIHGRWAMLGTLGAIAVEALTG-------VAWQDAGK-----VELVEGSSYLGQPLPFS 116
EL +GR AM+ LG A TG VA+ + G + G P P +
Sbjct: 311 ELKNGRLAMIAVLGFYFQHAKTGASPIENLVAFINDGANITTAMFATAGKKVRPTPAPAA 370
Query: 117 LTT--LIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHA 174
+T L+WI + E+ N L FDPL L +P LE +++E+ H
Sbjct: 371 ASTERLLWIPGVKAP--EHLNNT-------LVGDRGFDPLNLGKNPNALERFRVSEVFHG 421
Query: 175 RLAMVAF 181
RLAM+AF
Sbjct: 422 RLAMLAF 428
>gi|543938|sp|Q00827.1|CB48_MAIZE RecName: Full=Chlorophyll a-b binding protein 48, chloroplastic;
AltName: Full=LHCII type I CAB-48; Short=LHCP; Flags:
Precursor
gi|22228|emb|CAA44888.1| chlorophyll a/b binding protein precursor [Zea mays]
Length = 264
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 80/156 (51%), Gaps = 20/156 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWA+ LG + E A GV W AG EG S+ G P
Sbjct: 90 FAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E A +DP LY GG FDPLGL DP +
Sbjct: 150 LVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDP---LYLGGSFDPLGLGDDPERFA 206
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ EIK+ RLAM + F +QA TGKGPI +A
Sbjct: 207 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 242
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 96/221 (43%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDP GLG E L+++
Sbjct: 67 LPGDFGFDPWGLGSDPESLRWNV------------------------------------- 89
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + +W AG+ E +
Sbjct: 90 ------QAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDT-------- 135
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+I+IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 136 ---TTLFIVELILIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGY 192
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ P KL+ L+ EIK+ RLAM+A + QA +TG GPI
Sbjct: 193 GTGSPEKLKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPI 233
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 84/217 (38%), Gaps = 81/217 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGL + E L++
Sbjct: 69 GDNGFDPLGLAEDPENLKW----------------------------------------- 87
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPFS 116
+ + EL++ RWAMLG G + E T + W DAGK E SS
Sbjct: 88 --YVQAELVNSRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSS--------- 136
Query: 117 LTTLIWIEVIVIGYIEYQR-----------------NAELDPVKRLYPGGYFDPLGLASD 159
TL IE I+ Y+E +R N L P + YPGG F+PL A
Sbjct: 137 --TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKNYSLPPNEVGYPGGIFNPLNFAPT 194
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E + E+ + RLAM+AFL F +Q TGKGP
Sbjct: 195 ----EEAKEKELANGRLAMLAFLGFIVQHNVTGKGPF 227
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 74/159 (46%), Gaps = 38/159 (23%)
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLP 114
L+ F + EL++GRWA LG G + E LT + W DAGK E SS
Sbjct: 87 NLKWFVQAELVNGRWATLGVAGMLLPEVLTNIGLINVPKWYDAGKAEYFASSS------- 139
Query: 115 FSLTTLIWIEVIVIGYIEYQR--------NAELDPVKRL---------YPGGYFDPLGLA 157
TL IE I+ Y+E +R + DP+ + YPGG F+PL A
Sbjct: 140 ----TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 195
Query: 158 SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E + E+ + RLAM+AFL F +Q TGKGP
Sbjct: 196 PT----EEAKERELANGRLAMLAFLGFIVQHNVTGKGPF 230
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 79/168 (47%), Gaps = 22/168 (13%)
Query: 52 PLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEG 105
PL + L+ F + EL+H RWAMLG G + E LT + W DAGK +
Sbjct: 67 PLNLGADPENLKWFVQAELMHCRWAMLGLAGMVGPELLTKIGMADLPNWIDAGKWD---- 122
Query: 106 SSYLGQ-PLPF-SLTTLIWIEVIVIGYIEYQRNAELDPVKRL----------YPGGYFDP 153
+LG PL F + + W EV ++ DP+ YP G FDP
Sbjct: 123 GYWLGAGPLFFVQMAMMNWAEVRRWQDMKAPGTMNEDPLTGANKGDTNTDVGYPKGLFDP 182
Query: 154 LGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
+G A DP K E L+ EI + RLAMVA + QA TG GP+ + T
Sbjct: 183 MGYAKDPKKAEELKRKEIANGRLAMVAIVGCFAQAISTGTGPVDNLFT 230
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 94/218 (43%), Gaps = 79/218 (36%)
Query: 4 DRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQ 63
D GFDPLGLG E L+++ S
Sbjct: 93 DFGFDPLGLGSDPETLKWNVQS-------------------------------------- 114
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFSL 117
EL+H RWAMLG G E LT + +W AG++E
Sbjct: 115 -----ELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDK----------- 158
Query: 118 TTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGLAS- 158
TTL +E+I +G+ E +R A++ DP+ +L YPGG +FDPLG S
Sbjct: 159 TTLFVVEMIFLGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG 218
Query: 159 DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
P K++ L+ EIK+ RLAM+A + QA +TG GPI
Sbjct: 219 SPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPI 256
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 84/217 (38%), Gaps = 81/217 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGL + E L++
Sbjct: 72 GDNGFDPLGLAEDPENLKW----------------------------------------- 90
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPFS 116
+ + EL++ RWAMLG G + E T + W DAGK E SS
Sbjct: 91 --YVQAELVNSRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSS--------- 139
Query: 117 LTTLIWIEVIVIGYIEYQR-----------------NAELDPVKRLYPGGYFDPLGLASD 159
TL IE I+ Y+E +R N L P + YPGG F+PL A
Sbjct: 140 --TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKNYSLPPNEVGYPGGIFNPLNFAPT 197
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E + E+ + RLAM+AFL F +Q TGKGP
Sbjct: 198 ----EEAKEKELANGRLAMLAFLGFIVQHNVTGKGPF 230
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 77/153 (50%), Gaps = 15/153 (9%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTG--------VAWQDAGKVELVEGSSYLGQP--- 112
+ R EL++GRWAMLG G + E + V ++ ++ G YLG P
Sbjct: 59 KLRSQELMNGRWAMLGITGCLVPELINSNPTPGFEPVWFKTGAQIFSEAGIDYLGVPGFI 118
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAELDPVKR--LYPGGY-FDPLGLASDPGKLENLQLA 169
SL +I ++ +++G EY R +L P YPGG FDPLG +SDP L++
Sbjct: 119 NAHSLVAVIVVQALLMGVAEYAR-IKLSPEGNDAFYPGGKAFDPLGFSSDPESFAELKVK 177
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPISFVATF 202
EIK+ RLAM+A Q A TG P+ + F
Sbjct: 178 EIKNGRLAMMAMAGLFAQGAVTGVSPLQNLHDF 210
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 95/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL D DSL N+
Sbjct: 69 LPGDFGFDPLGLSS-------DPDSLKWNV------------------------------ 91
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ E++H RWAMLG G E LT + +W AG+ E
Sbjct: 92 ------QAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDK-------- 137
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+I+IG+ E +R A++ DPV +L YPGG +FDPLG
Sbjct: 138 ---TTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGW 194
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P KL+ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 195 GSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 235
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 95/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL D DSL N+
Sbjct: 69 LPGDFGFDPLGLSS-------DPDSLKWNV------------------------------ 91
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ E++H RWAMLG G E LT + +W AG+ E
Sbjct: 92 ------QAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDK-------- 137
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+I+IG+ E +R A++ DPV +L YPGG +FDPLG
Sbjct: 138 ---TTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGW 194
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P KL+ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 195 GSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 235
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 82/154 (53%), Gaps = 28/154 (18%)
Query: 69 ELIHGRWAMLGTLGAIAVEALT--GVA------WQDAGKVELVEGSS--YLGQPLPFSLT 118
E++H RWAML LG + E L GV W G +L +G + YLG P F +
Sbjct: 150 EILHCRWAMLAALGVVVPELLDLFGVVHFVEPVWWKVGYAKL-QGDTLDYLGIP-GFRIA 207
Query: 119 TLIWIEVIVIGYI------EYQRNAELDPVKRL---------YPGG-YFDPLGLASDPGK 162
+ VI I EY R ++ ++ L YPGG FDPLGL+ DP
Sbjct: 208 GGQGVIVIAICQALLMVGPEYARYCGIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVA 267
Query: 163 LENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E+L++ EIK+ RLAMVA+L F IQAA TGKGPI
Sbjct: 268 FEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPI 301
>gi|338746088|emb|CCC15093.1| putative chloroplast light-harvesting complex II protein precursor
[Lepidodinium chlorophorum]
Length = 215
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 72/141 (51%), Gaps = 15/141 (10%)
Query: 72 HGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQPLPF---SLTT 119
H RWAMLG LG++ E L A W AG G YLG P S+
Sbjct: 72 HARWAMLGALGSLLPELLATYAGTPLLEPVWFKAGAQIFSPGGLDYLGNPSLVHAQSILA 131
Query: 120 LIWIEVIVIGYIEYQRNA--ELDPV-KRLYPGGYFDPLGLASDPGKLENLQLAEIKHARL 176
++ +V+++G E R A L V LYPG FDPLG + DP L LQ EIK+ RL
Sbjct: 132 ILGFQVLLMGLSEGYRLAGGPLGEVGDALYPGASFDPLGFSEDPESLLELQTKEIKNGRL 191
Query: 177 AMVAFLIFGIQAAFTGKGPIS 197
AM+A L QA TGKGP+S
Sbjct: 192 AMLAMLGMYTQALVTGKGPVS 212
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 86/217 (39%), Gaps = 81/217 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGL + E L++
Sbjct: 71 GDNGFDPLGLAEDPENLRW----------------------------------------- 89
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPFS 116
F + EL++GRWAMLG G + E T + W DAGK E SS
Sbjct: 90 --FVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSS--------- 138
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL--------DPVKRL---------YPGGYFDPLGLASD 159
TL IE I+ Y+E +R ++ DP+ + YPGG F+PL A
Sbjct: 139 --TLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPT 196
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E E+ + RLAM+AFL F IQ TGKGP
Sbjct: 197 IEAKEK----ELANGRLAMLAFLGFVIQHNVTGKGPF 229
>gi|302849410|ref|XP_002956235.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
gi|300258538|gb|EFJ42774.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
Length = 276
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 87/186 (46%), Gaps = 30/186 (16%)
Query: 44 DSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQD 96
++G+ PL+ + RFRE EL+H RWAMLG +G + E AL GV W
Sbjct: 77 EAGDAGFDPLELGKDPGAFARFREVELLHARWAMLGFVGCMVPELLALRGVELGEPVWWK 136
Query: 97 AGKVEL----------VEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNA---ELDPVK 143
G +L +EG G+ + + + +++G EY R L+PV
Sbjct: 137 VGASKLNSDLTLNWGGIEGFRIAGKQ---GIGLIAACQAVLMGGPEYARYVGIRSLEPVG 193
Query: 144 RLYPG-------GYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
PG G FDPL A+D + + EIK+ RLAMVA L +QAA T KGP+
Sbjct: 194 VFLPGDQNYPGGGPFDPLNYAADADGFVDQAVREIKNGRLAMVAMLGLFVQAAVTKKGPV 253
Query: 197 SFVATF 202
V F
Sbjct: 254 QNVMEF 259
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 94/219 (42%), Gaps = 79/219 (36%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLG E L+++
Sbjct: 86 GDFGFDPLGLGSDPETLRWNV--------------------------------------- 106
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFS 116
+ EL+H RWAMLG G E LT + +W AG++E +
Sbjct: 107 ----QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDT---------- 152
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGLAS 158
TTL +E+ IG+ E +R A++ DP+ +L YPGG +FDPLG S
Sbjct: 153 -TTLFIVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 211
Query: 159 -DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
P K++ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 212 GSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 250
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 86/217 (39%), Gaps = 81/217 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGL + E L++
Sbjct: 71 GDNGFDPLGLAEDPENLRW----------------------------------------- 89
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPFS 116
F + EL++GRWAMLG G + E T + W DAGK E SS
Sbjct: 90 --FVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSS--------- 138
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL--------DPVKRL---------YPGGYFDPLGLASD 159
TL IE I+ Y+E +R ++ DP+ + YPGG F+PL A
Sbjct: 139 --TLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPT 196
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E E+ + RLAM+AFL F IQ TGKGP
Sbjct: 197 IEAKEK----ELANGRLAMLAFLGFVIQHNVTGKGPF 229
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 96/221 (43%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL E L+++
Sbjct: 83 LPGDFGFDPLGLASDPESLRWN-------------------------------------- 104
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
++ EL+H RWAMLG G E LT + +W AG++E +
Sbjct: 105 -----QQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDT-------- 151
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+I IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 152 ---TTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 208
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P K++ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 209 GSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 249
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 86/216 (39%), Gaps = 81/216 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGL + E L++
Sbjct: 72 GDNGFDPLGLAEDPENLKW----------------------------------------- 90
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPFS 116
F + EL++GRWAMLG G + E T + W DAGK E SS
Sbjct: 91 --FVQAELVNGRWAMLGVAGMLLPEVFTNIGIINVPKWYDAGKEEYFASSS--------- 139
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL--------DPVKRL---------YPGGYFDPLGLASD 159
TL IE I+ Y+E +R ++ DP+ + YPGG F+PL A
Sbjct: 140 --TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPT 197
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGP 195
E EI + RLAM+AFL F IQ TGKGP
Sbjct: 198 LEAKEK----EIANGRLAMLAFLGFIIQHNVTGKGP 229
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 95/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDP GLG E L+++
Sbjct: 72 LPGDFGFDPWGLGSDPESLRWNV------------------------------------- 94
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + W AG+ + +
Sbjct: 95 ------QAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPFWYTAGEQQYFTDT-------- 140
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL IE+I+IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 141 ---TTLFIIELILIGWAEGRRWADIIKPGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGW 197
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P K++ L+ EIK+ RLAM+A + QA +TG GPI
Sbjct: 198 GSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPI 238
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 83/161 (51%), Gaps = 26/161 (16%)
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEAL--------TGVAWQDAGKVELVEGS-SYLGQ 111
Q+F E++H RWAML +LGA+ E L T W G +L + YLG
Sbjct: 154 AFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGI 213
Query: 112 P-LPFS-----LTTLIWIEVIVIGYIEYQRNAELDPVKRL---------YPGGY-FDPLG 155
P L + + I ++++G EY R ++ ++ L YPGG FDPL
Sbjct: 214 PGLHLAGSQGVIVIAICQAILMVG-PEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLN 272
Query: 156 LASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L+ D E L++ EIK+ RLAMVA+L F QAA TGKGP+
Sbjct: 273 LSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPV 313
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 95/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLG E L+++
Sbjct: 82 LPGDFGFDPLGLGSDPESLRWNV------------------------------------- 104
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + +W AG++E +
Sbjct: 105 ------QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDT-------- 150
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+ IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 151 ---TTLFVVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 207
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P K++ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 208 GSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 248
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 95/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLG E L+++
Sbjct: 93 LPGDFGFDPLGLGSDPESLRWNV------------------------------------- 115
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + +W AG++E +
Sbjct: 116 ------QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDT-------- 161
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+ IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 162 ---TTLFVVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 218
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P K++ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 219 GSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 259
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 90/214 (42%), Gaps = 68/214 (31%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLG E L++
Sbjct: 84 GDFGFDPLGLGSDPELLKW----------------------------------------- 102
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
F + EL+H RWAMLG G EALT + + Y TTL
Sbjct: 103 --FVQAELVHCRWAMLGAAGIFIPEALTKAGILNTPSWTVAGDQQYFTD-----ATTLFV 155
Query: 123 IEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGLAS--DPGK 162
IE+I+ + E +R A++ DPV +L YPGG +FDPLG D K
Sbjct: 156 IEIILFAWAEGRRWADIINPGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTGDAAK 215
Query: 163 LENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L++L+ EIK+ RLAM+A L +QA +T GPI
Sbjct: 216 LKDLRTREIKNGRLAMLAVLGAVVQANYTHTGPI 249
>gi|255074277|ref|XP_002500813.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516076|gb|ACO62071.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas sp. RCC299]
Length = 259
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 76/145 (52%), Gaps = 20/145 (13%)
Query: 69 ELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGS--SYLGQPLPFS----LTTLIW 122
E+IHGR+AMLG GA A E LTG+ W AG+ + SYL Q S L LI+
Sbjct: 86 EIIHGRFAMLGVTGAWAQENLTGIPWFMAGQECTFDNCSISYLNQSFTPSYDGALLGLIF 145
Query: 123 IEVIVIGYIEYQRNAELDP------VKRLYPGGYFDPLGLASDP------GKLENLQLAE 170
+EV+++GY E R ++ ++PGG FDPL + L+ L++ E
Sbjct: 146 LEVLLMGYAEGTRTGLIENPFDDVVAGSVFPGGRFDPLNFSDGKEANFFGDDLDTLKIKE 205
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGP 195
+KH RLAM+A+L GI A P
Sbjct: 206 LKHCRLAMLAWL--GILAQSVSTNP 228
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 95/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDP GLG E L+++
Sbjct: 82 LPGDFGFDPWGLGSDPESLRWNV------------------------------------- 104
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + W AG+ + +
Sbjct: 105 ------QAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPFWYTAGEQQYFTDT-------- 150
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL IE+I+IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 151 ---TTLFIIELILIGWAEGRRWADIIKPGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGW 207
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P K++ L+ EIK+ RLAM+A + QA +TG GPI
Sbjct: 208 GSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPI 248
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 39/160 (24%)
Query: 68 CELIHGRWAMLGTLGAIAVEAL---------TGVAWQDAGKVELVEGSSYLGQPLPFSLT 118
E+I+GR+AMLG GAIA E T V W G +Y P
Sbjct: 105 AEIINGRYAMLGAAGAIAPEIFGKIGIIPQETAVVWFKTGVFPPAGTYNYWADPY----- 159
Query: 119 TLIWIEVIVIGYIEYQRNAEL----------------------DPVKRLYPGGYFDPLGL 156
TL ++E+ ++G+ E++R + DP YPGG F+P G
Sbjct: 160 TLFFLEMALMGFAEHRRAQDFYKPGSMGKQYFLGFEKYLGGSGDPA---YPGGIFNPFGF 216
Query: 157 ASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D + L++ E+K+ RLAM+A L + IQA FTG GP
Sbjct: 217 GKDEKSMRTLKIKEVKNGRLAMLAILGYFIQAPFTGVGPF 256
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 95/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLG E L+++
Sbjct: 81 LPGDFGFDPLGLGSDPETLRWNV------------------------------------- 103
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + +W AG++E +
Sbjct: 104 ------QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDT-------- 149
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+ IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 150 ---TTLFIVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 206
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P K++ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 207 GSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 247
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 94/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL E L+++
Sbjct: 81 LPGDFGFDPLGLSSDPESLRWNV------------------------------------- 103
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + +W AG+ E +
Sbjct: 104 ------QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDT-------- 149
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+I IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 150 ---TTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 206
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P KL+ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 207 GSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 247
>gi|13265505|gb|AAG40044.2|AF324693_1 At2g34430 [Arabidopsis thaliana]
Length = 268
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 79/157 (50%), Gaps = 19/157 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGVAWQDAGKVE--LVEGSSYLGQPLPFSL 117
R RE E+IH RWAMLG LG + E A GV + +A V+ + P ++
Sbjct: 91 FARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWVQGWFTDLQRRRIGPT-WAT 149
Query: 118 TTLIWIE--VIVIGYIEYQRNAELDPVK------------RLYPGGYFDPLGLASDPGKL 163
+L+ + +GY Y + L + LYPGG FDPLGLA+DP
Sbjct: 150 PSLVHAQEHFSHLGYSSYPHGSLLRATRVPGNGPLGEAEDLLYPGGSFDPLGLATDPEAF 209
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 210 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 246
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 87/217 (40%), Gaps = 81/217 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGL + E L++
Sbjct: 71 GDNGFDPLGLAEDPENLKW----------------------------------------- 89
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPFS 116
F + EL++GRWAMLG G + E T + W DAGK E SS
Sbjct: 90 --FVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPKWYDAGKEEYFASSS--------- 138
Query: 117 LTTLIWIEVIVIGYIEYQR--------NAELDPVKRL---------YPGGYFDPLGLASD 159
TL IE I+ Y+E +R + DP+ + YPGG F+PL A
Sbjct: 139 --TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP- 195
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LE + E+ + RLAM+AFL F IQ TGKGP
Sbjct: 196 --TLEAKE-KELANGRLAMLAFLGFVIQHNVTGKGPF 229
>gi|145079310|tpg|DAA05909.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Acetabularia acetabulum]
Length = 208
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 15/135 (11%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT---GVA-----WQDAGKVELVEGS-SYLGQP 112
+++RE ELIH R+AMLG LG + E L GV+ W AG EG YLG P
Sbjct: 74 FKKYRETELIHARFAMLGALGCVTPELLAKYGGVSFGESVWFRAGAQIFQEGGLDYLGSP 133
Query: 113 LPF---SLTTLIWIEVIVIGYIE-YQRNA--ELDPVKRLYPGGYFDPLGLASDPGKLENL 166
S+ ++ +V+++G +E Y+ N + + LYPG FDPLGLA DP L
Sbjct: 134 ALIHAQSIGAIVISQVVLMGLVEGYRVNGGPAGEGLDSLYPGESFDPLGLADDPDTFAEL 193
Query: 167 QLAEIKHARLAMVAF 181
++ EIK+ RLAM +
Sbjct: 194 KIKEIKNGRLAMFSM 208
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 84/154 (54%), Gaps = 26/154 (16%)
Query: 69 ELIHGRWAMLGTLGAIAVEALT--GVA------WQDAGKVELVEGSS--YLGQP-LPFS- 116
E++H RWAMLG LG + E L G+ W G +L +G + YLG P L +
Sbjct: 35 EILHCRWAMLGALGVVVPELLDLFGIVHFVEPVWWKVGYAKL-QGDTLDYLGIPGLRIAG 93
Query: 117 ---LTTLIWIEVIVIGYIEYQRNAELDPVKRL---------YPGG-YFDPLGLASDPGKL 163
+ + + +++ EY R ++ ++ L YPGG FDPLGL+ DP
Sbjct: 94 GQGIIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDLNYPGGALFDPLGLSKDPVAF 153
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
E L++ EIK+ RLAMVA+L F +QAA TGKGP+
Sbjct: 154 EELKVKEIKNGRLAMVAWLGFYVQAAVTGKGPVQ 187
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 80/154 (51%), Gaps = 28/154 (18%)
Query: 69 ELIHGRWAMLGTLGAIAVEAL--------TGVAWQDAGKVELVEGSS--YLGQPLPFSLT 118
E++H RWAML LG + E L W G +L +G + YLG P F +
Sbjct: 150 EILHCRWAMLAALGVVVPELLDLFEVVHFVEPVWWKVGYAKL-QGDTLDYLGIP-GFRIA 207
Query: 119 TLIWIEVIVIGYI------EYQRNAELDPVKRL---------YPGG-YFDPLGLASDPGK 162
+ VI I EY R ++ ++ L YPGG FDPLGL+ DP
Sbjct: 208 GGQGVIVIAICQALLMVGPEYARYCGIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVA 267
Query: 163 LENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E+L++ EIK+ RLAMVA+L F IQAA TGKGPI
Sbjct: 268 FEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPI 301
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 35/171 (20%)
Query: 52 PLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEG 105
PL+ + L+ + + EL+H R+AM G + E L W +AGK
Sbjct: 59 PLKLGEDPASLKWYVQSELVHSRFAMAAVAGILIPEVLKAFGAVNLPVWYEAGK------ 112
Query: 106 SSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPV--------------------KRL 145
Y + P TLI +E+ ++E +R + +
Sbjct: 113 --YAQESSPIPFNTLIALEIFAFNFVEIKRWQDFKKPGSQGEEGSFVGLEGFFKGTGENG 170
Query: 146 YPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
YPGG FDPLGL+ PG E ++L EIK+ RLAM+AF+ F Q TGKGPI
Sbjct: 171 YPGGVFDPLGLSKGPG-YEAMKLREIKNGRLAMLAFIGFASQYLATGKGPI 220
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 88/219 (40%), Gaps = 81/219 (36%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL + E L++
Sbjct: 71 LAGDNGFDPLGLAEDPENLKW--------------------------------------- 91
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLP 114
F + EL++GRWAMLG G + E T + W DAGK + SS
Sbjct: 92 ----FVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSS------- 140
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPVKRL---------YPGGYFDPLGLA 157
TL IE I+ Y+E +R ++ DP+ + YPGG F+PL A
Sbjct: 141 ----TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFA 196
Query: 158 SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ + E+ + RLAM+AFL F +Q TGKGP
Sbjct: 197 PT----QEAKEKELANGRLAMLAFLGFVVQHNVTGKGPF 231
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 94/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL E L+++
Sbjct: 80 LPGDFGFDPLGLSSDPESLKWNV------------------------------------- 102
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + +W AG+ E +
Sbjct: 103 ------QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDT-------- 148
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+I IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 149 ---TTLFIVELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 205
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P KL+ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 206 GSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 246
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 94/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL E L+++
Sbjct: 80 LPGDFGFDPLGLSSDPESLKWNV------------------------------------- 102
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + +W AG+ E +
Sbjct: 103 ------QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDT-------- 148
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+I IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 149 ---TTLFIVELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 205
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P KL+ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 206 GSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 246
>gi|87313193|gb|ABD37893.1| light-harvesting chlorophyll-a/b binding protein Lhcp2 [Mesostigma
viride]
Length = 262
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 77/141 (54%), Gaps = 19/141 (13%)
Query: 69 ELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVEL---VEGSSYLGQPLPFS--------L 117
ELIHGRWAMLG GA A E TG+ W AG + G + G+ + +
Sbjct: 76 ELIHGRWAMLGCAGAWAAEQGTGINWFQAGAICTPADCTGIHFPGEVISMAPEGSGFPNF 135
Query: 118 TTLIWIEVIVIGYIEYQRNAELD------PVKRLYPGG-YFDPLGLASDPGKLENLQLAE 170
+ + VI++G E R +D V L+PGG +FDPLGLA D L+ +++AE
Sbjct: 136 YIQLGLSVIMMGLAEGYRGGLIDNVFPELEVGDLHPGGEHFDPLGLA-DKLDLDRMKIAE 194
Query: 171 IKHARLAMVAFLIFGIQAAFT 191
+KHARLAM+++L + QA T
Sbjct: 195 LKHARLAMLSWLGYMSQAVAT 215
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 86/219 (39%), Gaps = 81/219 (36%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL + E L++
Sbjct: 71 LAGDNGFDPLGLAEDPENLKW--------------------------------------- 91
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLP 114
F + EL++GRWAMLG G + E T + W DAGK + SS
Sbjct: 92 ----FVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSS------- 140
Query: 115 FSLTTLIWIEVIVIGYIEYQR--------NAELDPVKRL---------YPGGYFDPLGLA 157
TL IE I+ Y+E +R + DP+ + YPGG F+PL A
Sbjct: 141 ----TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 196
Query: 158 SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E E+ + RLAM+AFL F IQ TGKGP
Sbjct: 197 PTVEAKEK----ELANGRLAMLAFLGFVIQHNVTGKGPF 231
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 89/211 (42%), Gaps = 59/211 (27%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDP+GLG E L +
Sbjct: 53 LAGDYGFDPMGLGANPERLTW--------------------------------------- 73
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQ-DAGKVELV---EGSSY-LGQPLPF 115
+R+ EL + RWAMLG G + E + W AG E + +G+ +G L +
Sbjct: 74 ----YRQAELQNARWAMLGVAGILGQEIINPEQWWYSAGMPENLPSFDGNKVNMGGILAW 129
Query: 116 SLTTLIWIEVIVIGYIEYQRNAELDPVKRL---------YPGGYFDPLGLASDPGKLENL 166
+ ++EV I + + DP YPGG FDPLG + G + +
Sbjct: 130 EFLLMHFVEVRRWQDIRKKDSVNADPFNPNLKVPNPEMGYPGGPFDPLGFSK--GNFKEV 187
Query: 167 QLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
Q EIK+ RLAMVAF+ F IQA TGKGP++
Sbjct: 188 QTKEIKNGRLAMVAFVAFTIQAQATGKGPLA 218
>gi|148908677|gb|ABR17446.1| unknown [Picea sitchensis]
Length = 160
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 72/137 (52%), Gaps = 20/137 (14%)
Query: 77 MLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EV 125
MLG LG + E L TGV W AG EG YLG P +++ I +V
Sbjct: 1 MLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQV 60
Query: 126 IVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMV 179
+++G IE R LDP LYPGG FDPLGLA DP L++ EIK+ RLAM
Sbjct: 61 VLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMF 117
Query: 180 AFLIFGIQAAFTGKGPI 196
+ F +QA TGKGPI
Sbjct: 118 SMFGFFVQAIVTGKGPI 134
>gi|145079755|tpg|DAA05930.1| TPA_inf: chloroplast light-harvesting complex protein precursor
Lhcp1.1 [Mesostigma viride]
Length = 222
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 77/141 (54%), Gaps = 19/141 (13%)
Query: 69 ELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVEL---VEGSSYLGQPLPFS--------L 117
ELIHGRWAMLG GA A E TG+ W AG + G + G+ + +
Sbjct: 36 ELIHGRWAMLGCAGAWAAEQGTGINWFQAGAICTPADCTGIHFPGEVISMAPEGSGFPNF 95
Query: 118 TTLIWIEVIVIGYIEYQRNAELD------PVKRLYPGG-YFDPLGLASDPGKLENLQLAE 170
+ + VI++G E R +D V L+PGG +FDPLGLA D L+ +++AE
Sbjct: 96 YIQLGLSVIMMGLAEGYRGGLIDNVFPELEVGDLHPGGEHFDPLGLA-DKLDLDRMKIAE 154
Query: 171 IKHARLAMVAFLIFGIQAAFT 191
+KHARLAM+++L + QA T
Sbjct: 155 LKHARLAMLSWLGYMSQAVAT 175
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 96/221 (43%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDP GLG E L+++
Sbjct: 70 LPGDFGFDPWGLGSDPESLRWNV------------------------------------- 92
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + +W AG+ +Y
Sbjct: 93 ------QAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGE------QTYFAD--- 137
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+I+IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 138 --TTTLFIVELILIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGY 195
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P K++ L+ EIK+ RLAM+A + QA +TG GPI
Sbjct: 196 GSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPI 236
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 81/160 (50%), Gaps = 36/160 (22%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPF 115
L+ F + E++H RWAMLG G EALT + W AG+ E
Sbjct: 98 LKWFVQSEIVHSRWAMLGAAGIFIPEALTKLGILNTPFWYTAGEQEYFTDQ--------- 148
Query: 116 SLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGLA 157
TTL +E+I++G+ E +R A++ DPV +L YPGG +FDP G
Sbjct: 149 --TTLFIVEMILLGWAEGRRWADILKPGSVNTDPVFPNNKLTGTDVGYPGGFWFDPFGWG 206
Query: 158 S-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ P KL+ L+ EIK+ RLAM+A + QA +TG PI
Sbjct: 207 TASPEKLKELRTKEIKNGRLAMLAVMGAWFQAVYTGARPI 246
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 81/160 (50%), Gaps = 36/160 (22%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPF 115
L+ F + E++H RWAMLG G EALT + W AG+ E
Sbjct: 98 LKWFVQSEIVHSRWAMLGAAGIFIPEALTKLGILNTPFWYTAGEQEYFTDQ--------- 148
Query: 116 SLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGLA 157
TTL +E+I++G+ E +R A++ DPV +L YPGG +FDP G
Sbjct: 149 --TTLFIVEMILLGWAEGRRWADILKPGSVNTDPVFPNNKLTGTDVGYPGGFWFDPFGWG 206
Query: 158 S-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ P KL+ L+ EIK+ RLAM+A + QA +TG PI
Sbjct: 207 TASPEKLKELRTKEIKNGRLAMLAVMGAWFQAVYTGARPI 246
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 93/218 (42%), Gaps = 79/218 (36%)
Query: 4 DRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQ 63
D GFDPLGLG E L+++ S
Sbjct: 93 DFGFDPLGLGSDPETLKWNVQS-------------------------------------- 114
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFSL 117
EL+H RWAMLG G E LT + +W AG+ E
Sbjct: 115 -----ELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDK----------- 158
Query: 118 TTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGLAS- 158
TTL +E+I +G+ E +R A++ DP+ +L YPGG +FDPLG S
Sbjct: 159 TTLFVVEMIFLGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG 218
Query: 159 DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
P K++ L+ EIK+ RLAM+A + QA +TG GPI
Sbjct: 219 SPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPI 256
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 39/160 (24%)
Query: 68 CELIHGRWAMLGTLGAIAVEAL---------TGVAWQDAGKVELVEGSSYLGQPLPFSLT 118
E+I+GR+AMLG GAIA E T V W G +Y P
Sbjct: 105 AEIINGRYAMLGAAGAIAPEIFGKIGIIPQQTAVVWFKTGVFPPAGTYNYWADPY----- 159
Query: 119 TLIWIEVIVIGYIEYQRNAEL----------------------DPVKRLYPGGYFDPLGL 156
TL ++E+ ++G+ E++R + DP YPGG F+P G
Sbjct: 160 TLFFLEMALMGFAEHRRAQDYYKPGSMGKQYFLGFEKYLGGSGDPA---YPGGIFNPFGF 216
Query: 157 ASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D + L++ E+K+ RLAM+A L + IQA FTG GP
Sbjct: 217 GKDEKSMRTLKIKEVKNGRLAMLAILGYFIQAPFTGVGPF 256
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 87/217 (40%), Gaps = 81/217 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGL + E L++
Sbjct: 72 GDNGFDPLGLAEDPENLRW----------------------------------------- 90
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPFS 116
+ + EL++GRWAMLG G + E LT W DAGK E SS
Sbjct: 91 --YTQAELVNGRWAMLGVAGMVLPEVLTNYGIINVPKWYDAGKAEYFASSS--------- 139
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL--------DPVKRL---------YPGGYFDPLGLASD 159
TL IE I+ Y+E +R ++ DP+ + YPGG F+PL
Sbjct: 140 --TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEP- 196
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LE + EI + RLAM+AFL F +Q TGKGP
Sbjct: 197 --TLEARE-KEIANGRLAMLAFLGFIVQHNVTGKGPF 230
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 93/219 (42%), Gaps = 79/219 (36%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLG E L++
Sbjct: 92 GDFGFDPLGLGSDPETLKW----------------------------------------- 110
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFS 116
+ EL+H RWAMLG G E T + +W AG++E
Sbjct: 111 --MVQAELVHCRWAMLGAAGIFIPELCTKLGILNTPSWYTAGELEYFTDK---------- 158
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGLAS 158
TTL +E+I +G+ E +R A++ DP+ +L YPGG +FDPLG S
Sbjct: 159 -TTLFVVEMIFLGWAEGRRWADILEPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 217
Query: 159 -DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
P K++ L+ EIK+ RLAM+A + QA +TG GPI
Sbjct: 218 GSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPI 256
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 102/208 (49%), Gaps = 41/208 (19%)
Query: 21 YDFDSLDQNLAKNDVG-ELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLG 79
YD+ Q A D G ++LG+ D PT +R+ E++H RWAML
Sbjct: 140 YDYPDHLQGEAPGDYGFDILGLSRD-----PT---------AFERYFNFEILHARWAMLA 185
Query: 80 TLGAIAVEALT---GV-----AWQDAGKVELVEGSS--YLGQP-LPFS----LTTLIWIE 124
LG + E L GV W G +L +G + YLG P L + + + + +
Sbjct: 186 ALGVVIPELLDRFGGVQFSEPVWWKVGYAKL-QGDTLDYLGIPGLHIAGAQGILVIAFCQ 244
Query: 125 VIVIGYIEYQRNAELDPVKRL---------YPGG-YFDPLGLASDPGKLENLQLAEIKHA 174
VI++ EY R ++ ++ L YPGG FDPLGL D E+L++ E+K+
Sbjct: 245 VILMLGPEYARYCGIEALEPLGIFLPGDVNYPGGALFDPLGLTKDAAAFEDLKVKEMKNG 304
Query: 175 RLAMVAFLIFGIQAAFTGKGPISFVATF 202
RLAMVA+L F +QA T KGPI + F
Sbjct: 305 RLAMVAWLGFYVQALVTQKGPIDNLFDF 332
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 29/160 (18%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFS---LT 118
L+ +R+ EL H RWAMLG G + E + V E P PF+ +
Sbjct: 67 LKWYRQSELQHARWAMLGVAGVLVQEIVKP-------DVYFYEAGLPQNLPEPFTNINMG 119
Query: 119 TLIWIEVIVIGYIEYQR--------NAELDPV---------KRLYPGGYFDPLGLASDPG 161
L+ E I++ ++E +R + DP+ + YPGG FDP G + G
Sbjct: 120 GLLAWEFILMHWVEVRRWQDYKNFGSVNEDPIFKGNKVPNPEMGYPGGIFDPFGFSK--G 177
Query: 162 KLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
L+ LQ EIK+ RLAM+A++ F +QA TGKGP++ ++
Sbjct: 178 NLKELQTKEIKNGRLAMIAYMAFILQAQATGKGPLAALSA 217
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 86/219 (39%), Gaps = 81/219 (36%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL + E L++
Sbjct: 69 LPGDNGFDPLGLAEDPENLKW--------------------------------------- 89
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLP 114
F + EL +GRWAMLG G + E T + W DAGK E SS
Sbjct: 90 ----FVQAELQNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKQEYFASSS------- 138
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPVKRLY---------PGGYFDPLGLA 157
TL IE I+ Y+E +R ++ DP+ + Y PGG F+PL A
Sbjct: 139 ----TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYRLPPNEVGYPGGIFNPLNFA 194
Query: 158 SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E EI + RLAM+AFL F IQ TGKGP
Sbjct: 195 PSLEAKEK----EIANGRLAMLAFLGFLIQHNLTGKGPF 229
>gi|302831910|ref|XP_002947520.1| light harvesting complex A [Volvox carteri f. nagariensis]
gi|300267384|gb|EFJ51568.1| light harvesting complex A [Volvox carteri f. nagariensis]
Length = 264
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 86/171 (50%), Gaps = 28/171 (16%)
Query: 52 PLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT---------GVAWQDAGKVEL 102
PL E L+ + + EL+H R+AML G + E LT GVAW DAGK +
Sbjct: 83 PLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIGFSWPGAGVAWYDAGKFQY 142
Query: 103 VEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQR--NAELDPV---KRL-------YPGGY 150
+S L F + L++ + Y ++ + +A DP+ +L YPGG
Sbjct: 143 FAPASSL-----FGVQMLLFAWAELRRYQDFVKPGSANQDPIFSNNKLPDGNEPGYPGGI 197
Query: 151 FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
FDP G + G +++L+ EIK+ RLAM+AF F QA TG P+ +AT
Sbjct: 198 FDPFGWSK--GDMKSLKTKEIKNGRLAMLAFAGFAAQAYTTGTTPLKNLAT 246
>gi|732534|gb|AAB40979.1| light harvesting complex a [Volvox carteri]
Length = 264
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 86/171 (50%), Gaps = 28/171 (16%)
Query: 52 PLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT---------GVAWQDAGKVEL 102
PL E L+ + + EL+H R+AML G + E LT GVAW DAGK +
Sbjct: 83 PLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIGFSWPGAGVAWYDAGKFQY 142
Query: 103 VEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQR--NAELDPV---KRL-------YPGGY 150
+S L F + L++ + Y ++ + +A DP+ +L YPGG
Sbjct: 143 FAPASSL-----FGVQMLLFAWAELRRYQDFVKPGSANQDPIFSNNKLPDGNEPGYPGGI 197
Query: 151 FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
FDP G + G +++L+ EIK+ RLAM+AF F QA TG P+ +AT
Sbjct: 198 FDPFGWSK--GDMKSLKTKEIKNGRLAMLAFAGFAAQAYTTGTTPLKNLAT 246
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 94/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLG E L++
Sbjct: 73 LPGDFGFDPLGLGSDPESLKW--------------------------------------- 93
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLP 114
F + ELIHGRWAML G + E L + W DAG E Y P
Sbjct: 94 ----FAQAELIHGRWAMLAAAGILIPEWLERLGFIDNFNWFDAGTRE------YFADP-- 141
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL------DPVKRL-----------YPGG-YFDPLGL 156
TTL +++I++G+IE +R A++ D +L YPGG +FDP
Sbjct: 142 ---TTLFVVQLILMGWIEGRRWADMIKPGCVDIDPKLPHKTKPKPDVGYPGGLWFDPWNW 198
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
P + ++ EIK+ RLAM+AF+ F QA +TG+GPI
Sbjct: 199 GRGSPEPVMAIRTKEIKNGRLAMLAFVGFWFQAIYTGEGPI 239
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 83/158 (52%), Gaps = 28/158 (17%)
Query: 69 ELIHGRWAMLGTLGAIAVEALT--GVA------WQDAGKVELVEGSS--YLGQPLPFSLT 118
E++H RWAML LG + E L G+ W G +L +G + YLG P F +
Sbjct: 139 EILHCRWAMLAALGVVVPELLDLFGIVHFVEPVWWKVGYAKL-QGDTLDYLGIP-GFRIA 196
Query: 119 TLIWIEVIVIGYI------EYQRNAELDPVKRL---------YPGG-YFDPLGLASDPGK 162
I VI I + EY R ++ ++ L YPGG FDPLGL+ DP
Sbjct: 197 GGQGIIVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVA 256
Query: 163 LENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
E ++ EIK+ RLAMVA++ F IQAA TGKGP+ +A
Sbjct: 257 FEEFKVKEIKNGRLAMVAWIGFYIQAAVTGKGPVQNLA 294
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 94/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL D DSL N
Sbjct: 68 LPGDFGFDPLGLSS-------DPDSLKWN------------------------------- 89
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + +W AG+ E
Sbjct: 90 -----AQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDK-------- 136
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+I+IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 137 ---TTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 193
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P K++ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 194 GSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 234
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 81/160 (50%), Gaps = 26/160 (16%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT---GV-----AWQDAGKVELVEGSS--YLGQ 111
+F E++H RWAML LG + E L GV W G +L EG + YLG
Sbjct: 141 FDKFFNFEILHARWAMLAALGVVIPEVLEKFFGVNFAESVWWRVGYAKL-EGDTLDYLGI 199
Query: 112 PLPFSLTTLIWIEVIVIGYI-----EYQRNAELDPVKRL---------YPGGY-FDPLGL 156
P + I + + ++ EY R ++ ++ L YPGG FDPLGL
Sbjct: 200 PGLHIVGAQGIIVIAICQFLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLGL 259
Query: 157 ASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ DP E L++ EIK+ RLAMVA+L F +QA T KGP+
Sbjct: 260 SKDPATFEELKVKEIKNGRLAMVAWLGFYVQALVTKKGPL 299
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 96 DAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGY-FDPL 154
DA ++ + S + GQ P W+ I Y ++ + + +PG Y FD
Sbjct: 87 DAARMRARDASVWFGQDRP------KWLGPIPYDYPDHLQGS--------FPGDYGFDIA 132
Query: 155 GLASDPGKLENLQLAEIKHARLAMVAFL 182
GL DP K + EI HAR AM+A L
Sbjct: 133 GLGKDPAKFDKFFNFEILHARWAMLAAL 160
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 94/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLG E L++
Sbjct: 73 LPGDFGFDPLGLGSDPESLKW--------------------------------------- 93
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLP 114
F + ELIHGRWAML G + E L + W DAG E Y P
Sbjct: 94 ----FAQAELIHGRWAMLAAAGILIPEWLERLGFIDNFNWFDAGTRE------YFADP-- 141
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL------DPVKRL-----------YPGG-YFDPLGL 156
TTL +++I++G+IE +R A++ D +L YPGG +FDP
Sbjct: 142 ---TTLFVVQLILMGWIEGRRWADMIKPGCVDIDPKLPHKTKPKPDIGYPGGLWFDPWNW 198
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
P + ++ EIK+ RLAM+AF+ F QA +TG+GPI
Sbjct: 199 GRGSPEPVMAIRTKEIKNGRLAMLAFVGFWFQAIYTGEGPI 239
>gi|145351847|ref|XP_001420273.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144580507|gb|ABO98566.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 365
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 91/226 (40%), Gaps = 70/226 (30%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLGK
Sbjct: 181 LCGDAGFDPLGLGKDD-------------------------------------------- 196
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALT--GVA------WQDAGKVELVEGSS--YLG 110
L R RE EL+H RWAMLG +G E L GVA W G ++ S Y G
Sbjct: 197 -LPRMRELELLHARWAMLGIVGVAVPELLERYGVADLGEPVWWKVGAAKMNSDVSLDYFG 255
Query: 111 -QPLPFS----LTTLIWIEVIVIGYIEYQRNAELD---------PVKRLYPGGY-FDPLG 155
Q + + + +V+++G EY R +D P + YPGG FDP
Sbjct: 256 LQGFHIAGGSGIAIIAACQVVLMGGPEYARYVGIDSLEPVGVYLPGDKDYPGGAPFDPFK 315
Query: 156 LASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
++ D + E ++ EIKH RLAM+A L QA T GPI +A+
Sbjct: 316 ISDDADEFEKQKVMEIKHGRLAMIAMLGVAAQAFVTRAGPIENLAS 361
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 73/157 (46%), Gaps = 38/157 (24%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPF 115
L+ + + EL++GRWAMLG G E LT + W DAGKVE S
Sbjct: 87 LKWYVQAELVNGRWAMLGVAGMXIPEVLTSIGLINVPKWYDAGKVEYFASS--------- 137
Query: 116 SLTTLIWIEVIVIGYIEYQR--------NAELDPVKRL---------YPGGYFDPLGLAS 158
TL IE I+ Y+E +R + DP+ + YPGG F+PL +
Sbjct: 138 --XTLFVIEFILFHYVELRRWQDIKYPGSVNQDPIXKSYSLPPNEVGYPGGIFNPLNFSP 195
Query: 159 DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGP 195
E E+ + RLAM+AFL F +Q TGKGP
Sbjct: 196 SMEAKEK----ELANGRLAMLAFLGFVVQHNVTGKGP 228
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 87/219 (39%), Gaps = 81/219 (36%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL + E L++
Sbjct: 72 LAGDNGFDPLGLAEDPENLKW--------------------------------------- 92
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLP 114
F + EL++GRWAMLG G + E T + W DAGK + SS
Sbjct: 93 ----FVQAELVNGRWAMLGVAGMLLPEVFTKLGIINVPEWYDAGKEQYFASSS------- 141
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPVKRL---------YPGGYFDPLGLA 157
TL IE I+ Y+E +R ++ DP+ + YPGG F+PL A
Sbjct: 142 ----TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFA 197
Query: 158 SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E EI + RLAM+AFL F +Q TGKGP
Sbjct: 198 PTLEAKEK----EIANGRLAMLAFLGFVVQHNVTGKGPF 232
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 86/217 (39%), Gaps = 81/217 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGL + E L++
Sbjct: 72 GDNGFDPLGLAEDPENLRW----------------------------------------- 90
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPFS 116
+ + EL++GRWAMLG G + E T + W DAGK E SS
Sbjct: 91 --YVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSS--------- 139
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL--------DPVKRL---------YPGGYFDPLGLASD 159
TL IE I+ Y+E +R ++ DP+ + YPGG F+PL A
Sbjct: 140 --TLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPT 197
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E EI + RLAM+AFL F +Q TGKGP
Sbjct: 198 LEAKEK----EIANGRLAMLAFLGFIVQHNVTGKGPF 230
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 73/158 (46%), Gaps = 38/158 (24%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPF 115
L+ F + EL++GRWAMLG G + E T + W DAGK E SS
Sbjct: 88 LKWFVQAELVNGRWAMLGVAGMLLPEVFTQIGIINVPKWYDAGKQEYFASSS-------- 139
Query: 116 SLTTLIWIEVIVIGYIEYQR--------NAELDPVKRL---------YPGGYFDPLGLAS 158
TL IE I+ Y+E +R + DP+ + YPGG F+PL A
Sbjct: 140 ---TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP 196
Query: 159 DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E E+ + RLAM+AFL F +Q TGKGP
Sbjct: 197 TAEAKEK----ELANGRLAMLAFLGFIVQHNVTGKGPF 230
>gi|225447745|ref|XP_002263201.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
[Vitis vinifera]
gi|147804704|emb|CAN71620.1| hypothetical protein VITISV_015544 [Vitis vinifera]
Length = 257
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 99/227 (43%), Gaps = 85/227 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLGK +L++
Sbjct: 78 GDYGFDPLGLGKDPAFLKW----------------------------------------- 96
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIW 122
+RE ELIHGRWAM +G +A +G+ W E + G PFS TL+
Sbjct: 97 --YREAELIHGRWAMAAVVGIFVGQAWSGIPW--------FEAGAAPGAVAPFSFGTLLG 146
Query: 123 IEVIVIGYIEYQR-----NAELDPV------------------KRLYPGG-YFDPLGLAS 158
+++++G++E +R N E V ++ YPGG +FDPL LA
Sbjct: 147 TQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLSLAG 206
Query: 159 ---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D KLE L+LAEIKHAR+AM+A LIF +A GK P+
Sbjct: 207 TIKDGVYIPDVEKLERLKLAEIKHARIAMLAMLIFYFEAG-QGKTPL 252
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192
PG Y FDPLGL DP L+ + AE+ H R AM A + + A++G
Sbjct: 77 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 123
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 80/154 (51%), Gaps = 28/154 (18%)
Query: 69 ELIHGRWAMLGTLGAIAVEAL--------TGVAWQDAGKVELVEGSS--YLGQPLPFSLT 118
E++H RWAML LG + E L W G +L +G + YLG P F +
Sbjct: 143 EILHCRWAMLAALGVVIPELLDLFGLVHFVEPVWWKVGYAKL-QGDTLDYLGIP-GFRIA 200
Query: 119 TLIWIEVIVIGYI------EYQRNAELDPVKRL---------YPGG-YFDPLGLASDPGK 162
+ VI I EY R ++ ++ L YPGG FDPLGL+ DP
Sbjct: 201 GGQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVA 260
Query: 163 LENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E+L++ EIK+ RLAMVA+L F IQAA TGKGP+
Sbjct: 261 FEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPV 294
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 80/161 (49%), Gaps = 28/161 (17%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT---GV-----AWQDAGKVELVEGSS--YLGQ 111
+F E++H RWAML LG + E L GV W G +L EG + YLG
Sbjct: 141 FDKFFNFEILHARWAMLAALGVVIPEVLEKFFGVKFAESVWWRVGYAKL-EGDTLDYLGI 199
Query: 112 PLPFSLTTLIWIEVIVIGYI------EYQRNAELDPVKRL---------YPGGY-FDPLG 155
P + I VI I EY R ++ ++ L YPGG FDPLG
Sbjct: 200 P-GLHIVGAQGILVIAICQFLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLG 258
Query: 156 LASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L+ DP E L++ EIK+ RLAMVA+L F +QA T KGP+
Sbjct: 259 LSKDPATFEELKVKEIKNGRLAMVAWLGFYVQALVTKKGPL 299
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 96 DAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGY-FDPL 154
DA ++ + S + GQ P W+ I Y ++ + + +PG Y FD
Sbjct: 87 DAARMRARDASVWFGQDRP------KWLGPIPYDYPDHLQGS--------FPGDYGFDIA 132
Query: 155 GLASDPGKLENLQLAEIKHARLAMVAFL 182
GL DP K + EI HAR AM+A L
Sbjct: 133 GLGKDPAKFDKFFNFEILHARWAMLAAL 160
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 77/153 (50%), Gaps = 26/153 (16%)
Query: 69 ELIHGRWAMLGTLGAIAVEAL--------TGVAWQDAGKVELV-EGSSYLGQPLPFSLTT 119
E++H RWAML LG + E L W G +L + YLG P F +
Sbjct: 144 EILHCRWAMLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLGIP-GFRIAG 202
Query: 120 LIWIEVIVIGYI------EYQRNAELDPVKRL---------YPGG-YFDPLGLASDPGKL 163
+ VI I EY R ++ ++ L YPGG FDPLGL+ DP
Sbjct: 203 GQGVVVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGPLFDPLGLSKDPVAF 262
Query: 164 ENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E+L++ EIK+ RLAMVA+ F IQAA TGKGP+
Sbjct: 263 EDLKVKEIKNGRLAMVAWFGFYIQAAVTGKGPV 295
>gi|40714521|dbj|BAD06924.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 241
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 33/164 (20%)
Query: 62 LQRFRECELIHGRWAMLGTLGAI--AVEALTGVA---WQDAGKVELVEGSSYLGQPLPFS 116
L+ + + EL+HGR+AMLG G I ++ A G+ W DAGKV +VE ++
Sbjct: 65 LKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGFPEWYDAGKV-VVEKNN-------ID 116
Query: 117 LTTLIWIEVIVIGYIEYQR------------------NAELDPVKRLYPGG-YFDPLGLA 157
TL+ I+ ++G+ E +R E ++ YPGG +FDP+GL+
Sbjct: 117 FPTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFFDPMGLS 176
Query: 158 S-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
D K + + E+K+ RLAM+A L F Q A TGKGP+ +A
Sbjct: 177 RGDAAKYQEYKQKEVKNGRLAMIACLGFAAQYAATGKGPLDNLA 220
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 94/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL E L+++
Sbjct: 68 LPGDFGFDPLGLSSDPESLKWNV------------------------------------- 90
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ E++H RWAMLG G E LT + +W AG+ E
Sbjct: 91 ------QAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDK-------- 136
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+I+IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 137 ---TTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 193
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P K++ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 194 GSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 234
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 92/217 (42%), Gaps = 81/217 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGL + E L++
Sbjct: 65 GDNGFDPLGLAEDPENLRW----------------------------------------- 83
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPFS 116
+ + EL++GRWAMLG G + E LT + W DAGK S+Y S
Sbjct: 84 --YVQAELVNGRWAMLGVAGMLTPELLTKIGLINAPEWYDAGK------STYFA-----S 130
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL--------DPVKRLY---------PGGYFDPLGLASD 159
+TL +E I+ Y+E +R ++ DP+ + Y PG F+PL A
Sbjct: 131 SSTLFVVEFILFHYVEIRRWQDIKEPGCVNQDPIFKSYSLPPHECGYPGSVFNPLNFAP- 189
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LE + EI + RLAM+A+L F +Q A TGKGP+
Sbjct: 190 --TLEAKE-KEIANGRLAMLAYLGFSVQHAVTGKGPL 223
>gi|27542569|gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas reinhardtii]
Length = 241
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 33/164 (20%)
Query: 62 LQRFRECELIHGRWAMLGTLGAI--AVEALTGVA---WQDAGKVELVEGSSYLGQPLPFS 116
L+ + + EL+HGR+AMLG G I ++ A G+ W DAGKV +VE ++
Sbjct: 65 LKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGFPEWYDAGKV-VVEKNN-------ID 116
Query: 117 LTTLIWIEVIVIGYIEYQR------------------NAELDPVKRLYPGG-YFDPLGLA 157
TL+ I+ ++G+ E +R E ++ YPGG +FDP+GL+
Sbjct: 117 FPTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFFDPMGLS 176
Query: 158 S-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
D K + + E+K+ RLAM+A L F Q A TGKGP+ +A
Sbjct: 177 RGDAAKYQEYKQKEVKNGRLAMIACLGFAAQYAATGKGPLDNLA 220
>gi|195639128|gb|ACG39032.1| hypothetical protein [Zea mays]
Length = 45
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 41/45 (91%)
Query: 77 MLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLI 121
ML TLGA+ VE LTGV WQDAGKVELV+GSSYLGQPLPF+++TLI
Sbjct: 1 MLATLGALTVEWLTGVTWQDAGKVELVDGSSYLGQPLPFTISTLI 45
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 94/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL E L+++
Sbjct: 93 LPGDFGFDPLGLASDPESLRWNV------------------------------------- 115
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + +W AG++E +
Sbjct: 116 ------QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDT-------- 161
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+ IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 162 ---TTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 218
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P K++ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 219 GSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 259
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 94/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL E L+++
Sbjct: 82 LPGDFGFDPLGLASDPESLRWNV------------------------------------- 104
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + +W AG++E +
Sbjct: 105 ------QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDT-------- 150
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+ IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 151 ---TTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 207
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P K++ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 208 GSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 248
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 94/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL E L+++
Sbjct: 8 LPGDFGFDPLGLSSDPESLRWNV------------------------------------- 30
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ EL+H RWAMLG G E LT + +W AG+ E +
Sbjct: 31 ------QAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDT-------- 76
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E++ IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 77 ---TTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 133
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P KL+ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 134 GSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 174
>gi|303324979|pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 79/155 (50%), Gaps = 36/155 (23%)
Query: 67 ECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFSLTTL 120
+ EL+H RWAMLG G E LT + +W AG+ E + TTL
Sbjct: 11 QAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDT-----------TTL 59
Query: 121 IWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGLAS-DPG 161
+E++ IG+ E +R A++ DP+ +L YPGG +FDPLG S P
Sbjct: 60 FIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQ 119
Query: 162 KLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
KL+ L+ EIK+ RLAM+A + Q +TG GPI
Sbjct: 120 KLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 154
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 88/219 (40%), Gaps = 81/219 (36%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL + E L++
Sbjct: 66 LAGDNGFDPLGLAEDPENLRW--------------------------------------- 86
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLP 114
F + EL++GRWAMLG G + E LT W DAGK E SS
Sbjct: 87 ----FVQAELVNGRWAMLGVAGMLIPEVLTKAGLINAPQWYDAGKSEYFASSS------- 135
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPVKRL---------YPGGYFDPLGLA 157
TL +E I+ Y+E +R ++ DP+ + YPG F+PL A
Sbjct: 136 ----TLFVVEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFA 191
Query: 158 SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LE + E+ + RLAM+AFL F IQ TGKGP
Sbjct: 192 P---TLEAKE-KELANGRLAMLAFLGFLIQHNVTGKGPF 226
>gi|242045514|ref|XP_002460628.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
gi|241924005|gb|EER97149.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
Length = 160
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 74/138 (53%), Gaps = 14/138 (10%)
Query: 77 MLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEV 125
MLG LG + E A GV W AG EG YLG P ++ IW ++V
Sbjct: 1 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQV 60
Query: 126 IVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFL 182
+++G +E R A + V LYPGG FDPLGLA DP L++ E+K+ RLAM +
Sbjct: 61 VLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMF 120
Query: 183 IFGIQAAFTGKGPISFVA 200
F +QA TGKGP+ +A
Sbjct: 121 GFFVQAIVTGKGPLENLA 138
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 88/219 (40%), Gaps = 81/219 (36%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL + E L++
Sbjct: 66 LAGDNGFDPLGLAEDPENLRW--------------------------------------- 86
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLP 114
F + EL++GRWAMLG G + E LT W DAGK E SS
Sbjct: 87 ----FVQAELVNGRWAMLGVAGMLIPEVLTKAGLINAPQWYDAGKSEYFASSS------- 135
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPVKRL---------YPGGYFDPLGLA 157
TL +E I+ Y+E +R ++ DP+ + YPG F+PL A
Sbjct: 136 ----TLFVVEFILFXYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFA 191
Query: 158 SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LE + E+ + RLAM+AFL F IQ TGKGP
Sbjct: 192 P---TLEAKE-KELANGRLAMLAFLGFLIQHNVTGKGPF 226
>gi|87313171|gb|ABD37882.1| light-harvesting chlorophyll-a/b binding protein Lhca4.2
[Mesostigma viride]
gi|145079732|tpg|DAA05926.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca5 [Mesostigma viride]
Length = 246
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 82/163 (50%), Gaps = 35/163 (21%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPF 115
L+ + EL + RWAMLG G ++V+ L G+ W DA L P
Sbjct: 78 LKWMVQAELQNARWAMLGVAGMLSVDLLQGILPDNVPQWYDA---------PLLADVYPA 128
Query: 116 SLTTLIWIEVIVIGYIEYQR--------NAELDPV---KRL-------YPGGYFDPLGLA 157
+L I++I++G++E +R +A +DPV +L YPGG FDPLG +
Sbjct: 129 EWKSLFIIQMILMGFVEARRWADINTPGSANVDPVFNNNKLPDSGTPGYPGGMFDPLGFS 188
Query: 158 SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
G LE + E+++ RLAMVA L IQ TGK P++ +A
Sbjct: 189 K--GNLEESKWKELRNGRLAMVASLGMFIQYDATGKSPLTNLA 229
>gi|74272669|gb|ABA01130.1| chloroplast light harvesting complex I protein [Chlamydomonas
incerta]
Length = 241
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 83/160 (51%), Gaps = 33/160 (20%)
Query: 62 LQRFRECELIHGRWAMLGTLGAI--AVEALTGVA---WQDAGKVELVEGSSYLGQPLPFS 116
L+ + + EL+HGR+AMLG G I ++ A G+ W DAGKV +VE ++
Sbjct: 65 LRWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGFPEWYDAGKV-VVEKNN-------ID 116
Query: 117 LTTLIWIEVIVIGYIEYQR------------------NAELDPVKRLYPGG-YFDPLGLA 157
TLI I+ ++G+ E +R E ++ YPGG +FDP+GL+
Sbjct: 117 FPTLIVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFFDPMGLS 176
Query: 158 S-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D K + E+K+ RLAM+A L F Q A TGKGP+
Sbjct: 177 RGDAAKYAEYKQKEVKNGRLAMIACLGFAAQYAATGKGPL 216
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 88/219 (40%), Gaps = 81/219 (36%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL + E L++
Sbjct: 63 LPGDNGFDPLGLAEDPENLRW--------------------------------------- 83
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLP 114
+ + EL++GRWAMLG G + E LT W DAGK E SS
Sbjct: 84 ----YVQAELVNGRWAMLGVAGMLIPEVLTKAGLINAPQWYDAGKSEYFASSS------- 132
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPVKRL---------YPGGYFDPLGLA 157
TL IE I+ Y+E +R ++ DP+ + YPG F+PL A
Sbjct: 133 ----TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFA 188
Query: 158 SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LE + E+ + RLAM+AFL F IQ TGKGP
Sbjct: 189 P---TLEAKE-KELANGRLAMLAFLAFLIQHNVTGKGPF 223
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 95/219 (43%), Gaps = 79/219 (36%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLG E L++
Sbjct: 80 GDFGFDPLGLGSEPELLKW----------------------------------------- 98
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFS 116
F + E++H RWAMLG G E LT + +W AG E + + Q
Sbjct: 99 --FVQAEIVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAG-----EQTYFADQ----- 146
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL-A 157
TTL +E++ +G+ E +R A++ DPV +L YPGG +FDPLG A
Sbjct: 147 -TTLFIVELLFMGWAEGRRWADILKPGSVNTDPVFPNNKLTGTDVGYPGGFWFDPLGWGA 205
Query: 158 SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
K++ L+ EIK+ RLAM+A + QA +TG GPI
Sbjct: 206 GGAAKVKELRTKEIKNGRLAMLAVMGAWFQAVYTGTGPI 244
>gi|227202590|dbj|BAH56768.1| AT5G54270 [Arabidopsis thaliana]
Length = 162
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 69/136 (50%), Gaps = 16/136 (11%)
Query: 77 MLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQP---LPFSLTTLIWIE 124
MLG G I E L W AG EG YLG P S+ ++ +
Sbjct: 1 MLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 60
Query: 125 VIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVA 180
VI++G +E R LD V LYPGG YFDPLGLA DP L++ EIK+ RLAM +
Sbjct: 61 VILMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 120
Query: 181 FLIFGIQAAFTGKGPI 196
F +QA TGKGP+
Sbjct: 121 MFGFFVQAIVTGKGPL 136
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 94/219 (42%), Gaps = 79/219 (36%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLG E L+++
Sbjct: 81 GDFGFDPLGLGSDPESLRWNV--------------------------------------- 101
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFS 116
+ EL+H RWAMLG G E LT + +W AG++E +
Sbjct: 102 ----QAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPSWYSAGELEYFTDT---------- 147
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGLAS 158
TTL +E+ IG+ E +R A++ DP+ +L YPGG +FDPLG +
Sbjct: 148 -TTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGT 206
Query: 159 -DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
P K+++L+ EIK+ RLAM+A + Q +T GPI
Sbjct: 207 GSPQKIKDLRTKEIKNGRLAMLAVMGAWFQHIYTATGPI 245
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 75/146 (51%), Gaps = 13/146 (8%)
Query: 64 RFRECELIHGRWAMLGTLGAIAVEALTGVA-------WQDAGKVELVE-GSSYLGQP--- 112
R R EL++GRWAMLG G + E + + W + G + G YLG P
Sbjct: 71 RLRTQELMNGRWAMLGITGCLTPELINSNSTPGFEPVWFNTGAQIFSDAGIDYLGVPGFI 130
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAEL-DPVKRLYPGGY-FDPLGLASDPGKLENLQLAE 170
SL +I ++ +++G EY R + + YPGG FDPLG +SDP L L++ E
Sbjct: 131 NAHSLFAVIVVQALLMGLAEYARIKFVPEGADPFYPGGKTFDPLGFSSDPEILAELKVKE 190
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPI 196
IK+ RLAM+A Q A TG P+
Sbjct: 191 IKNGRLAMMAMAGLFAQGAVTGVSPL 216
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 29/160 (18%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFS---LT 118
L+ +R+ EL H RWAMLG G + E + V E P PF+ +
Sbjct: 55 LKWYRQSELQHARWAMLGVAGVLVQEIVKP-------DVYFYEAGLPQNLPEPFTNINMG 107
Query: 119 TLIWIEVIVIGYIEYQR--------NAELDPV---------KRLYPGGYFDPLGLASDPG 161
L+ E I++ ++E +R + DP+ + YPGG FDP G + G
Sbjct: 108 GLLAWEFILMHWVEVRRWQDYKNFGSVNEDPIFKGNKVPNPEMGYPGGIFDPFGFSK--G 165
Query: 162 KLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
+ LQ EIK+ RLAM+A++ F +QA TGKGP++ ++
Sbjct: 166 DFKELQTKEIKNGRLAMIAYMAFILQAQATGKGPLAALSA 205
>gi|302830496|ref|XP_002946814.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
gi|300267858|gb|EFJ52040.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
Length = 227
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 91/225 (40%), Gaps = 73/225 (32%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGL P+ F S
Sbjct: 20 GDFGFDPLGLFDPSSGGSAGFLS------------------------------------- 42
Query: 63 QRF-RECELIHGRWAMLGTLGAIAVEAL---------TGVAWQDAGKVELVEGSSYLGQP 112
QR+ EL+H RWAMLG G +A E L TG+ W G + G P
Sbjct: 43 QRWLHTAELMHARWAMLGAAGCLAPEYLAHEKVIPKATGLLWFKTGFLPQASAGFDYGLP 102
Query: 113 LPFSLTTLIWIEVIVIGYIEYQRNAE-----------LDPVKRL----------YPGG-Y 150
L L ++++++G E R AE L +++L YPGG
Sbjct: 103 L----GVLFAVQMVMMGVAEGLRGAEYIAPGSLRNNKLLGLEKLIATTRAGSAAYPGGLM 158
Query: 151 FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGP 195
F+PLGL P + +Q AEI+H RLAM+A L + QA TG+GP
Sbjct: 159 FNPLGLGEKPAAMREMQQAEIRHGRLAMLACLGYAAQAVVTGRGP 203
>gi|224034127|gb|ACN36139.1| unknown [Zea mays]
Length = 191
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 74/141 (52%), Gaps = 20/141 (14%)
Query: 77 MLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEV 125
MLG LG + E A GV W AG EG YLG P ++ IW +V
Sbjct: 1 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 60
Query: 126 IVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMV 179
+++G IE R A +DP LYPGG FDPLGLA DP L++ E+K+ RLAM
Sbjct: 61 VLMGAIEGYRVAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMF 117
Query: 180 AFLIFGIQAAFTGKGPISFVA 200
+ F +QA TGKGP+ +A
Sbjct: 118 SMFGFFVQAIVTGKGPLENLA 138
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 86/219 (39%), Gaps = 81/219 (36%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL + E L++
Sbjct: 71 LPGDNGFDPLGLAEDPENLRW--------------------------------------- 91
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLP 114
+ + EL++GRWAMLG G + E LT W DAGK E SS
Sbjct: 92 ----YVQAELVNGRWAMLGVAGMLIPEVLTKAGLINAPQWYDAGKSEYFASSS------- 140
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPVKRL---------YPGGYFDPLGLA 157
TL IE I+ Y+E +R ++ DP+ + YPG F+PL A
Sbjct: 141 ----TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFA 196
Query: 158 SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E E+ + RLAM+AFL F IQ TGKGP
Sbjct: 197 PTLEAKEK----ELANGRLAMLAFLAFLIQHNVTGKGPF 231
>gi|575349|emb|CAA57877.1| light-harvesting chlorophyll a /b binding protein [Nicotiana
tabacum]
Length = 200
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 70/159 (44%), Gaps = 38/159 (23%)
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLP 114
L+ F + EL++ RWAMLG G + E T + W DAGK E SS
Sbjct: 36 NLKWFVQAELVNVRWAMLGVAGMLLPEVFTNIGILNVPKWYDAGKEEYFASSS------- 88
Query: 115 FSLTTLIWIEVIVIGYIEYQR-----------------NAELDPVKRLYPGGYFDPLGLA 157
TL IE I+ Y+E +R N L P + YPGG F+PL A
Sbjct: 89 ----TLFVIEFILFHYVEIRRWQDIKNPGSVNQXPIFKNYSLPPNEVGYPGGIFNPLNFA 144
Query: 158 SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E EI + RLAM+AFL F +Q GKGP
Sbjct: 145 PTAEAKE----KEIANGRLAMLAFLGFIVQHNVVGKGPF 179
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 94/221 (42%), Gaps = 79/221 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL D DSL N+
Sbjct: 68 LPGDFGFDPLGLSS-------DPDSLKWNV------------------------------ 90
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ E++H RWAMLG G E LT + +W AG+ E
Sbjct: 91 ------QAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDK-------- 136
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPV---KRL------YPGG-YFDPLGL 156
TTL +E+I+IG+ E +R A++ DP+ +L YPGG +FDPLG
Sbjct: 137 ---TTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 193
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
S P K++ L+ EIK+ RL M+A + Q +TG GPI
Sbjct: 194 GSGSPAKIKELRTKEIKNGRLTMLAVMGAWFQHIYTGTGPI 234
>gi|412985627|emb|CCO19073.1| unknown [Bathycoccus prasinos]
Length = 291
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 27/159 (16%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT--GVAWQDAGKVELVEGSSYLGQPLPFSLTT 119
++++R E+IH RWAML G + EAL G W++ GKV +EGS+ P L
Sbjct: 111 IKQYRVAEVIHARWAMLAVPGIVIPEALNIAGGDWRETGKV-FLEGSTGRFGPAELWLGI 169
Query: 120 LIWIEVIVIGYIEYQRN---------------------AELDPVKRLYPGGYFDPLGLAS 158
+ ++++G E R+ A+LDP+ PGG D +A+
Sbjct: 170 AVAPLIVLMGGAEKFRSDPASAPSGFVPFKGSFTGKDFAKLDPIN---PGGPLDFYNVAA 226
Query: 159 DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
P LE L++ EIK+ RLAM+A L +Q A TG+GP +
Sbjct: 227 TPQDLEILKVKEIKNGRLAMIAMLGVFVQGATTGEGPAA 265
>gi|159467559|ref|XP_001691959.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278686|gb|EDP04449.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 288
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 84/160 (52%), Gaps = 33/160 (20%)
Query: 62 LQRFRECELIHGRWAMLGTLGAI--AVEALTGVA---WQDAGKVELVEGSSYLGQPLPFS 116
L+ + + EL+HGR+AMLG G I ++ A G+ W DAGKV +VE ++
Sbjct: 65 LKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGFPEWYDAGKV-VVEKNN-------ID 116
Query: 117 LTTLIWIEVIVIGYIEYQR------------------NAELDPVKRLYPGG-YFDPLGLA 157
TL+ I+ ++G+ E +R E ++ YPGG +FDP+GL+
Sbjct: 117 FPTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGLENGYPGGRFFDPMGLS 176
Query: 158 S-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D K + + E+K+ RLAM+A L F Q A TGKGP+
Sbjct: 177 RGDAAKYQEYKQKEVKNGRLAMIACLGFAAQYAATGKGPL 216
>gi|87313191|gb|ABD37892.1| light-harvesting chlorophyll-a/b binding protein Lhcp1 [Mesostigma
viride]
gi|145079583|tpg|DAA05919.1| TPA_inf: chloroplast light-harvesting complex protein precursor
Lhcp1.2 [Mesostigma viride]
Length = 267
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 19/143 (13%)
Query: 67 ECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVEL---VEGSSYLGQPLPFS------- 116
E ELIHGRWAMLG GA A E TG+ W AG + G + G+ + +
Sbjct: 74 EVELIHGRWAMLGCAGAWAAEQGTGINWFQAGAICTPADCTGIHFPGEVISMAPAGSGFP 133
Query: 117 -LTTLIWIEVIVIGYIEYQRNAELDP------VKRLYPGG-YFDPLGLASDPGKLENLQL 168
+ + + +G E R +D V L+PGG +FDPLGLA+ L+ +++
Sbjct: 134 NFYIQLALSTVAMGLAEGYRGGLIDSCFPELTVGDLHPGGEHFDPLGLANKL-DLDRMKI 192
Query: 169 AEIKHARLAMVAFLIFGIQAAFT 191
AE+KHARLAM+++L + QA T
Sbjct: 193 AELKHARLAMLSWLGYMSQAIAT 215
>gi|227206230|dbj|BAH57170.1| AT3G27690 [Arabidopsis thaliana]
Length = 160
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 71/137 (51%), Gaps = 20/137 (14%)
Query: 77 MLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEV 125
MLG LG E L+ GV W AG EG YLG P ++ IW +V
Sbjct: 1 MLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQV 60
Query: 126 IVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMV 179
+++G+IE R LDP LYPGG FDPL LA DP L++ E+K+ RLAM
Sbjct: 61 VLMGFIEGYRIGGGPLGEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMF 117
Query: 180 AFLIFGIQAAFTGKGPI 196
+ F +QA TGKGPI
Sbjct: 118 SMFGFFVQAIVTGKGPI 134
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 33/164 (20%)
Query: 62 LQRFRECELIHGRWAMLGTLGAI--AVEALTGVA---WQDAGKVELVEGSSYLGQPLPFS 116
L+ + + EL+HGR+AMLG G I ++ A G+ W DAGKV +VE ++
Sbjct: 65 LKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGFPEWYDAGKV-VVEKNN-------ID 116
Query: 117 LTTLIWIEVIVIGYIEYQR------------------NAELDPVKRLYPGG-YFDPLGLA 157
TL+ ++ ++G+ E +R E ++ YPGG +FDP+GL+
Sbjct: 117 FPTLLITQLYLMGWAETKRWYDFKNPGSQGDGSFLGFTDEFKGLENGYPGGRFFDPMGLS 176
Query: 158 S-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
D K + + EIK+ RLAM+A L F Q A TGKGP+ +A
Sbjct: 177 RGDADKYKEYKQKEIKNGRLAMIACLGFAAQYAATGKGPLDNLA 220
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 75/158 (47%), Gaps = 38/158 (24%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPF 115
L+ F + EL++GRWAMLG G + E LT W DAGK SS
Sbjct: 64 LRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLLNAPEWYDAGKETYFASSS-------- 115
Query: 116 SLTTLIWIEVIVIGYIEYQRNAEL--------DPVKRL---------YPGGYFDPLGLAS 158
TL IE I+ Y+E +R ++ DP+ + YPG F+PL A
Sbjct: 116 ---TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAP 172
Query: 159 DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LEN + E+ + RLAM+AFL F +Q TGKGP
Sbjct: 173 ---TLENKE-KELANGRLAMLAFLGFLVQHNVTGKGPF 206
>gi|384253050|gb|EIE26525.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Coccomyxa subellipsoidea C-169]
Length = 272
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 93/217 (42%), Gaps = 78/217 (35%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLG E L +
Sbjct: 58 GDFGFDPLGLGADPERLAW----------------------------------------- 76
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPF-----SL 117
F E E +H RWAML A+ G+A Q+ + ++ + L P+PF ++
Sbjct: 77 --FAESERVHARWAML---------AVAGIAVQEVVRPDVFWYEAALKSPMPFGNSPAAI 125
Query: 118 TTLIWIEVIVIGYIEYQR--------NAELDPV---KRL------YPGGYFDPLGLASDP 160
L+ E+ + ++E +R + + DP+ +L YPGG F P+ P
Sbjct: 126 LGLVAFELFAMHFVEVRRAYDFKNPGSQDQDPIFSNNKLPKHEVGYPGGIFAPV----IP 181
Query: 161 GKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
G L L+L EIK+ RLAM+AF F +QA TGKGP++
Sbjct: 182 GDLAELKLKEIKNGRLAMLAFAGFVMQAQVTGKGPLA 218
>gi|159486759|ref|XP_001701405.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
gi|158271707|gb|EDO97521.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
Length = 298
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 100/223 (44%), Gaps = 48/223 (21%)
Query: 4 DRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQ 63
DR D L +G L Y SL + + +G LL + G ++P LQ Y+EV
Sbjct: 39 DRSKDQLYVGASQSSLAYLDGSLPGDFGFDPLG-LLDPVNSGGFIEPKWLQ-YSEV---- 92
Query: 64 RFRECELIHGRWAMLGTLGAIAVEAL---------TGVAWQDAGKVELVEG-SSYLGQPL 113
IH RWAMLG G IA E L T + W ++G + + Y P
Sbjct: 93 -------IHARWAMLGAAGCIAPEVLGAAGLIPDATNIKWFESGVIPPAGSYNGYWADPY 145
Query: 114 PFSLTTLIWIEVIVIGYIEYQRNAE--------------LDPVKR-----LYPGG-YFDP 153
T+ ++E++ + + E +R + L+ + + YPGG +F+
Sbjct: 146 -----TIFFVEIVAMQFAELRRLQDFRYPGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNL 200
Query: 154 LGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L ++ L+L EIK+ RLAM+A L +G QA TGKGP
Sbjct: 201 FNLGKTEAAMKELKLKEIKNGRLAMLAMLGYGAQAVMTGKGPF 243
>gi|60549178|gb|AAX23999.1| chloroplast chlorophyll a/b-binding protein CP24 precursor, partial
[Fragaria x ananassa]
Length = 147
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 78/152 (51%), Gaps = 41/152 (26%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLI 121
L+ +RE ELIHGRWAM +G +A +GV W AG + S+ PFS TL+
Sbjct: 3 LKWYREAELIHGRWAMTAVVGIFVGQAWSGVPWFQAG----ADPSAV----APFSFGTLL 54
Query: 122 WIEVIVIGYIEYQR-----NAELDPVKRL------------------YPGG-YFDPLGLA 157
+++++G++E +R N E V+ YPGG +FDPLG A
Sbjct: 55 GTQLLLMGWVESKRWVDFYNPESQSVEWATPWSKTAENFSNFTGEQGYPGGKFFDPLGFA 114
Query: 158 S---------DPGKLENLQLAEIKHARLAMVA 180
D KLE LQLAEIKH+RLAM+A
Sbjct: 115 GTIKDGVYIPDTEKLERLQLAEIKHSRLAMLA 146
>gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b protein of photosystem I (Type
III) [Chlamydomonas reinhardtii]
Length = 267
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 100/223 (44%), Gaps = 48/223 (21%)
Query: 4 DRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQ 63
DR D L +G L Y SL + + +G LL + G ++P LQ Y+EV
Sbjct: 39 DRSKDQLYVGASQSSLAYLDGSLPGDFGFDPLG-LLDPVNSGGFIEPKWLQ-YSEV---- 92
Query: 64 RFRECELIHGRWAMLGTLGAIAVEAL---------TGVAWQDAGKVELVEG-SSYLGQPL 113
IH RWAMLG G IA E L T + W ++G + + Y P
Sbjct: 93 -------IHARWAMLGAAGCIAPEVLGAAGLIPDATNIKWFESGVIPPAGSYNGYWADPY 145
Query: 114 PFSLTTLIWIEVIVIGYIEYQRNAE--------------LDPVKR-----LYPGG-YFDP 153
T+ ++E++ + + E +R + L+ + + YPGG +F+
Sbjct: 146 -----TIFFVEIVAMQFAELRRLQDFRYPGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNL 200
Query: 154 LGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L ++ L+L EIK+ RLAM+A L +G QA TGKGP
Sbjct: 201 FNLGKTEAAMKELKLKEIKNGRLAMLAMLGYGAQAVMTGKGPF 243
>gi|307109464|gb|EFN57702.1| hypothetical protein CHLNCDRAFT_59626 [Chlorella variabilis]
Length = 249
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 34/166 (20%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPF 115
L +R EL +GRWAMLG G I LT V W DAGKV ++ +PF
Sbjct: 68 LDWYRNAELQNGRWAMLGVAGIIFPAELTRVGLLNVPDWADAGKVYAESENA-----IPF 122
Query: 116 SLTTLIWIEVIVIGYIEYQRNAEL-DPVKRL-------------------YPGGYFDPLG 155
+ +L+ ++ + ++E +R ++ P + YPGG F+PLG
Sbjct: 123 A--SLLMVQFFLFNFVEIKRWEDIKKPGSQAEAGSFLGFESAFKGSGVSGYPGGPFNPLG 180
Query: 156 LA-SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
L S +++ + EI++ RLAM+AFL F Q A TGKGP+ +A
Sbjct: 181 LGNSSKESMDDFKWREIRNGRLAMMAFLGFLAQHAATGKGPLDNLA 226
>gi|405615|emb|CAA43803.1| LHC II Type III chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 83/184 (45%), Gaps = 30/184 (16%)
Query: 44 DSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQ 95
D+ L P + + + L E+I+GRWAMLG G I E L W
Sbjct: 78 DTAGLSADPEKAFAKNIAL------EVIYGRWAMLGAFGCITPEVLQKWVRVDFKEPVWF 131
Query: 96 DAGKVELVEGS-SYLGQP---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPG 148
AG EG YLG P S+ ++ +VI++G +E R D V LYPG
Sbjct: 132 KAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINRFDGVGEGNDLYPG 191
Query: 149 G-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI--------SFV 199
G YFD L L D L++ EIK+ LAM + F +QA TGK P+ +FV
Sbjct: 192 GKYFDLLSLVDDQVTFVELKVKEIKNGMLAMFSMFGFFVQAIVTGKDPLESLLDHLDNFV 251
Query: 200 ATFN 203
A N
Sbjct: 252 ANIN 255
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 75/158 (47%), Gaps = 38/158 (24%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPF 115
L+ F + EL++GRWAMLG G + E LT W DAGK SS
Sbjct: 81 LRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLLNAPEWYDAGKETYFASSS-------- 132
Query: 116 SLTTLIWIEVIVIGYIEYQRNAEL--------DPVKRL---------YPGGYFDPLGLAS 158
TL IE I+ Y+E +R ++ DP+ + YPG F+PL A
Sbjct: 133 ---TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAP 189
Query: 159 DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LEN + E+ + RLAM+AFL F +Q TGKGP
Sbjct: 190 ---TLENKE-KELANGRLAMLAFLGFLVQHNVTGKGPF 223
>gi|149242543|pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 73/158 (46%), Gaps = 38/158 (24%)
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLP 114
L+ F + EL++GRWAMLG G + E T + W AGK E SS
Sbjct: 3 NLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSS------- 55
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPVKRL---------YPGGYFDPLGLA 157
TL IE I+ Y+E +R ++ DP+ + YPGG F+PL A
Sbjct: 56 ----TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFA 111
Query: 158 SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGP 195
E EI + RLAM+AFL F IQ TGKGP
Sbjct: 112 PTLEAKEK----EIANGRLAMLAFLGFIIQHNVTGKGP 145
>gi|388507164|gb|AFK41648.1| unknown [Lotus japonicus]
Length = 160
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 73/141 (51%), Gaps = 20/141 (14%)
Query: 77 MLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEV 125
MLG LG + E A GV W AG EG YLG P ++ IW +V
Sbjct: 1 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILVIWATQV 60
Query: 126 IVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMV 179
I++G +E R A DP LYPGG FDPLGLA DP L++ E+K+ RLAM
Sbjct: 61 ILMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMF 117
Query: 180 AFLIFGIQAAFTGKGPISFVA 200
+ F +QA TGKGP+ +A
Sbjct: 118 SMFGFFVQAIVTGKGPLENLA 138
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 85/219 (38%), Gaps = 81/219 (36%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL + E L++
Sbjct: 66 LAGDNGFDPLGLAEDPENLRW--------------------------------------- 86
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLP 114
F + EL++GRWAMLG G + E LT W DA K E SS
Sbjct: 87 ----FVQAELVNGRWAMLGVAGMLIPEVLTKAGLINAPQWYDASKSEYFASSS------- 135
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL--------DPVKRL---------YPGGYFDPLGLA 157
TL +E I+ Y+E +R ++ DP+ + YPG F+PL A
Sbjct: 136 ----TLFVVEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFA 191
Query: 158 SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E E+ + RLAM+AFL F IQ TGKGP
Sbjct: 192 PTLEAKEK----ELANGRLAMLAFLGFLIQHNVTGKGPF 226
>gi|159476206|ref|XP_001696202.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714515|dbj|BAD06921.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158282427|gb|EDP08179.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 243
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 82/176 (46%), Gaps = 34/176 (19%)
Query: 52 PLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEG 105
PL + L+ +++ ELIH R AM G G + LT W DAGKV +
Sbjct: 56 PLGLGKDPVALRWYQQAELIHCRTAMAGVAGILIPGLLTKAGALNVPEWYDAGKVAIENS 115
Query: 106 SSYLGQPLPFSLTTLIWIEVIVIGYIEYQR-------------------NAELDPVKRL- 145
+ G +L+ +++ + G++E +R A L L
Sbjct: 116 FAPWG--------SLLAVQLFLCGFVEAKRWQDIRKPGSQGEPGSFLGFEASLKGTSELG 167
Query: 146 YPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
YPGG FDPLGL+ + K + +L E+K+ RLAM+AFL F Q TG GP+ +A
Sbjct: 168 YPGGPFDPLGLSKEADKWADWKLKEVKNGRLAMLAFLGFVAQKYATGAGPVDNLAA 223
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 92/219 (42%), Gaps = 79/219 (36%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLG E L++
Sbjct: 111 GDFGFDPLGLGSDPELLKW----------------------------------------- 129
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPFS 116
F + EL+H RWAML G + E L + W DAG E Y P
Sbjct: 130 --FAQAELMHSRWAMLAVAGILIPEWLESLGFIENYNWFDAGARE------YFADP---- 177
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL----------------DPVKRL-YPGG-YFDPLGLAS 158
TTL ++++++G++E +R A++ P + YPGG +FDPL
Sbjct: 178 -TTLFIVQLVLMGWVEGRRWADMIKPGCVDIEPTLPNKTKPKPDVGYPGGLWFDPLMWGR 236
Query: 159 -DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
P + L+ EIK+ RLAM+AF+ F QA +TG+GPI
Sbjct: 237 GSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPI 275
Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVA 180
PG + FDPLGL SDP L+ AE+ H+R AM+A
Sbjct: 110 PGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLA 144
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 36/156 (23%)
Query: 69 ELIHGRWAMLGTLGAIAVEAL---------TGVAWQDAGKVELVEGSSYLGQPLPFSLTT 119
E+IHGRWAMLG G +A E L TG+ W +G + Y P+ T
Sbjct: 116 EVIHGRWAMLGVAGIVAPEILGGMGVIPESTGLVWFTSGAIPPQGTFDYWANPM-----T 170
Query: 120 LIWIEVIVIGYIEYQRNAEL--------DPV-----------KRLYPGG-YFDPLGLASD 159
+ W+ + ++ + E +R + P+ YPGG +F+P L D
Sbjct: 171 IFWVNMCMMNFAEIKRGQDYWFPGSQAETPLLGWEKGFGGSGNPTYPGGKWFNPFNLGKD 230
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGP 195
+ ++Q E+K+ RLAM+AFL +QAA TG+GP
Sbjct: 231 --DMASMQKKEVKNGRLAMMAFLGCMVQAAVTGEGP 264
>gi|159479992|ref|XP_001698070.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714517|dbj|BAD06922.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158273869|gb|EDO99655.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 90/213 (42%), Gaps = 75/213 (35%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLG E L++
Sbjct: 48 GDFGFDPLGLGANAESLKW----------------------------------------- 66
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALT-GVAWQDAGKVELVEGSSYLGQPLPFSLTTLI 121
F+E EL+H RWAM G + E + V W +AGK E S LG PL L+
Sbjct: 67 --FKESELVHSRWAMAAVAGILVQEIVRPDVFWYNAGK----EVESPLG-PL-----GLL 114
Query: 122 WIEVIVIGYIEYQR-----------------NAELDPVKRLYPGGYFDPLGLASDPGKLE 164
+E ++ ++E +R +L P + YPGG F P PG L
Sbjct: 115 AVEFFLMHWVEVRRWQDLRKPGSVDQDPIFSQYKLPPHEVGYPGGVFAPF----IPGDLA 170
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
L++ EIK+ RLAM+AF+ F + A TGKGPI+
Sbjct: 171 ELKVKEIKNGRLAMLAFVGFVMAAQVTGKGPIA 203
>gi|145355794|ref|XP_001422134.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144582374|gb|ABP00451.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 281
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 35/163 (21%)
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEAL---------TGVAWQDAGKVELVEGSSYLGQPL 113
Q E+IHGRWAMLG G +A E L TG+ W AG + Y P
Sbjct: 99 QWLAYSEVIHGRWAMLGVAGMVAPEVLGGLGIIPQETGLVWYKAGMIPAQGTYDYWANPF 158
Query: 114 PFSLTTLIWIEVIVIGYIEYQR-----------NAELDPVKRL--------YPGGYFDPL 154
T+ WI ++ + E +R EL +++ YPGG+F+ +
Sbjct: 159 -----TIFWINAALMNFAELRRAQDYWNPGSMGKQELIGWEKMLGGSGEPAYPGGFFNIM 213
Query: 155 GLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
G + +++ EIK+ RLAM+A G QA TG+GP+
Sbjct: 214 GQGKS--DMAKMRVKEIKNGRLAMMACFACGAQAVMTGEGPVK 254
>gi|215740823|dbj|BAG96979.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 159
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 74/131 (56%), Gaps = 12/131 (9%)
Query: 77 MLGTLGAIAVEALTG--------VAWQDAGKVELVEGSS--YLGQPLPFSLTTLIWIEVI 126
MLG G I EA W G + L++G++ Y G +P +L + EV+
Sbjct: 1 MLGAAGFIIPEACNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGNSIPINLIVAVAAEVV 59
Query: 127 VIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFG 185
++G EY R LD +L+PGG FDPLGLASDP + L++ EIK+ RLAM + L F
Sbjct: 60 LVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFF 119
Query: 186 IQAAFTGKGPI 196
IQA TG+GP+
Sbjct: 120 IQAYVTGEGPV 130
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 92/219 (42%), Gaps = 72/219 (32%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
M GD GFDPLGLG+ +
Sbjct: 59 MPGDYGFDPLGLGE-------------------------------------------DKV 75
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV----AWQDAGKVELVEGSSYLGQPLPFS 116
L+ +++ EL H RWAMLG G A E + A + + L +G Y+ P
Sbjct: 76 ALEWYKQAELQHARWAMLGVTGMAAPELIQNPFVEGAMPNWAEAPLWDG--YMASP---- 129
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL--------DPVKRL----------YPGGYFDPLGLAS 158
TL +++ ++ + E +R ++ DP+ YP G FDP+G+A
Sbjct: 130 -NTLFVVQMFMMNWAEVRRWQDMKNPGTMNEDPLTGANKGDTNTDVGYPKGLFDPMGMAK 188
Query: 159 DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
DP K++ L++ EI + RLAMVA + IQ TG GPI+
Sbjct: 189 DPEKVKVLKVKEIANGRLAMVAVMGCIIQNEATGVGPIA 227
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 75/158 (47%), Gaps = 38/158 (24%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPF 115
L+ F + EL++GRWAMLG G + E LT W DAGK SS
Sbjct: 83 LRWFVQAELVNGRWAMLGVAGMLIPELLTKAGLLSAPEWYDAGKETYFASSS-------- 134
Query: 116 SLTTLIWIEVIVIGYIEYQRNAEL--------DPVKRL---------YPGGYFDPLGLAS 158
TL +E I+ Y+E +R ++ DP+ + YPG F+PL A
Sbjct: 135 ---TLFVVEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPDHDCGYPGSVFNPLNFAP 191
Query: 159 DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LEN + E+ + RLAM+AFL F +Q TGKGP
Sbjct: 192 ---TLENKE-KELANGRLAMLAFLGFLVQHNVTGKGPF 225
>gi|87313213|gb|ABD37903.1| light-harvesting chlorophyll-a/b binding protein Lhca1
[Chlamydomonas incerta]
Length = 233
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 28/161 (17%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT---------GVAWQDAGKVELVEGSSYLGQP 112
L+ + + EL++ R+AML G + E L+ GVAW DAGK E +S L
Sbjct: 79 LKWYAQAELMNARFAMLAVAGILVPELLSNIGFSWPGAGVAWYDAGKFEYFAPASSL--- 135
Query: 113 LPFSLTTLIWIEVIVIGYIEYQR--NAELDPV---KRL-------YPGGYFDPLGLASDP 160
F + L++ V + Y ++ + +A DP+ +L YPGG FDP G +
Sbjct: 136 --FGVQMLLFAWVEIRRYQDFVKPGSANQDPIFTNNKLPDGNEPGYPGGIFDPFGWSK-- 191
Query: 161 GKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
G +++L+L EIK+ RLAM+AF F QA TG P+ ++T
Sbjct: 192 GDIKSLKLKEIKNGRLAMLAFAGFIGQAYTTGTTPLKNLST 232
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 86/216 (39%), Gaps = 81/216 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGL + E L++
Sbjct: 72 GDNGFDPLGLAEDPENLRW----------------------------------------- 90
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPFS 116
F + EL++GRWAMLG G + E T + W AGK E SS
Sbjct: 91 --FVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSS--------- 139
Query: 117 LTTLIWIEVIVIGYIEYQR--------NAELDPVKRL---------YPGGYFDPLGLASD 159
TL IE I+ Y+E +R + DP+ + YPGG F+PL A
Sbjct: 140 --TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAP- 196
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGP 195
LE + EI + RLAM+AFL F IQ TGKGP
Sbjct: 197 --TLEAKE-KEIANGRLAMLAFLGFIIQHNVTGKGP 229
>gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 264
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 28/161 (17%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT---------GVAWQDAGKVELVEGSSYLGQP 112
L+ + + EL++ R+AML G + E L+ GVAW DAGK E +S L
Sbjct: 93 LKWYAQAELMNARFAMLAVAGILVPELLSNIGFSWPGAGVAWYDAGKFEYFAPASSL--- 149
Query: 113 LPFSLTTLIWIEVIVIGYIEYQR--NAELDPV---KRL-------YPGGYFDPLGLASDP 160
F + L++ V + Y ++ + +A DP+ +L YPGG FDP G +
Sbjct: 150 --FGVQMLLFAWVEIRRYQDFVKPGSANQDPIFTNNKLPDGNEPGYPGGIFDPFGWSK-- 205
Query: 161 GKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
G +++L+L EIK+ RLAM+AF F QA TG P+ ++T
Sbjct: 206 GDIKSLKLKEIKNGRLAMLAFAGFIGQAYTTGTTPLKNLST 246
>gi|159480898|ref|XP_001698519.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158282259|gb|EDP08012.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 262
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 28/161 (17%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALT---------GVAWQDAGKVELVEGSSYLGQP 112
L+ + + EL++ R+AML G + E L+ GVAW DAGK E +S L
Sbjct: 93 LKWYAQAELMNARFAMLAVAGILVPELLSNIGFSWPGAGVAWYDAGKFEYFAPASSL--- 149
Query: 113 LPFSLTTLIWIEVIVIGYIEYQR--NAELDPV---KRL-------YPGGYFDPLGLASDP 160
F + L++ V + Y ++ + +A DP+ +L YPGG FDP G +
Sbjct: 150 --FGVQMLLFAWVEIRRYQDFVKPGSANQDPIFTNNKLPDGNEPGYPGGIFDPFGWSK-- 205
Query: 161 GKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
G +++L+L EIK+ RLAM+AF F QA TG P+ ++T
Sbjct: 206 GDIKSLKLKEIKNGRLAMLAFAGFIGQAYTTGTTPLKNLST 246
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 84/217 (38%), Gaps = 81/217 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGL + E L++
Sbjct: 72 GDNGFDPLGLAEDPENLRW----------------------------------------- 90
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPFS 116
+ + EL++GRWAMLG G + E T + W DAGK E SS
Sbjct: 91 --YVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKSEYFASSS--------- 139
Query: 117 LTTLIWIEVIVIGYIEYQR--------NAELDPVKRL---------YPGGYFDPLGLASD 159
TL IE I+ Y+E +R + DP+ + YPG F+PL A
Sbjct: 140 --TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPQHECGYPGSVFNPLNFAPT 197
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E E+ + RLAM+AFL F +Q TGKGP
Sbjct: 198 LEAKEK----ELANGRLAMLAFLGFIVQHNVTGKGPF 230
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 84/217 (38%), Gaps = 81/217 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGL + E L++
Sbjct: 65 GDNGFDPLGLAEDPENLRW----------------------------------------- 83
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPFS 116
+ + EL++ RWAMLG G + E LT + W DAGK S+Y S
Sbjct: 84 --YVQAELVNARWAMLGVAGMLLPEVLTKIGIINAPLWYDAGK------STYFA-----S 130
Query: 117 LTTLIWIEVIVIGYIEYQR-----------------NAELDPVKRLYPGGYFDPLGLASD 159
+TL IE I+ Y+E +R N L P + YPG F+PL
Sbjct: 131 SSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKNYSLPPHECGYPGSVFNPLNFEPT 190
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E E+ + RLAM+AFL F +Q TGKGP
Sbjct: 191 LEAKEK----ELANGRLAMLAFLAFMVQHGITGKGPF 223
>gi|87313221|gb|ABD37907.1| light-harvesting chlorophyll-a/b binding protein Lhca5
[Chlamydomonas incerta]
Length = 257
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 92/213 (43%), Gaps = 75/213 (35%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLG E L++
Sbjct: 48 GDFGFDPLGLGANAESLKW----------------------------------------- 66
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALT-GVAWQDAGKVELVEGSSYLGQPLPFSLTTLI 121
F+E EL+H RWAM G + E + V W +AGK E S LG PL L+
Sbjct: 67 --FKESELVHCRWAMAAVAGILVQEIVRPDVFWYNAGK----EVESPLG-PL-----GLL 114
Query: 122 WIEVIVIGYIEYQRNAEL--------DPV---------KRLYPGGYFDPLGLASDPGKLE 164
+E ++ ++E +R +L DP+ + YPGG F P PG L
Sbjct: 115 AVEFFLMHWVELRRWQDLRKPGSVDQDPIFSQYKLPAHEVGYPGGVFAPF----IPGDLA 170
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
L++ EIK+ RLAM+AF+ F + A TGKGPI+
Sbjct: 171 ELKVKEIKNGRLAMLAFVGFVMAAQVTGKGPIA 203
>gi|169743368|gb|ACA66262.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 245
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 85/220 (38%), Gaps = 82/220 (37%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGL + E L++
Sbjct: 63 LAGDNGFDPLGLAEDPENLRW--------------------------------------- 83
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLP 114
+ + EL++ RWAMLG G + E LT + W DAGK S+Y
Sbjct: 84 ----YVQAELVNARWAMLGVAGVLVPEVLTKIGIINAPQWYDAGK------STYFA---- 129
Query: 115 FSLTTLIWIEVIVIGYIEYQR------------------NAELDPVKRLYPGGYFDPLGL 156
S +TL IE I+ Y+E +R N L P + YPG F+PL
Sbjct: 130 -SSSTLFVIEFILFHYVEIRRWQDIIKNPGCVNQDPIFKNYSLPPHECGYPGSVFNPLNF 188
Query: 157 ASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E E+ + RLAM+AFL F +Q TGKGP
Sbjct: 189 EPTLEAKEK----ELANGRLAMLAFLGFMVQHGITGKGPF 224
>gi|149392733|gb|ABR26169.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 144
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 65/117 (55%), Gaps = 13/117 (11%)
Query: 94 WQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVK 143
W AG EG YLG P ++ IW ++V+++G +E R A +DP
Sbjct: 9 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP-- 66
Query: 144 RLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
LYPGG FDPLGLA DP L++ EIK+ RLAM + F +QA TGKGP+ +A
Sbjct: 67 -LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 122
>gi|209778961|gb|ACI87791.1| putative chloroplast chlorophyll a/b-binding protein [Cupressus
sempervirens]
Length = 124
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 61/113 (53%), Gaps = 13/113 (11%)
Query: 94 WQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVK 143
W AG EG YLG P ++ IW +V+++G IE R LDP
Sbjct: 8 WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP-- 65
Query: 144 RLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LYPGG FDPLGLA DP L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 66 -LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 117
>gi|168812218|gb|ACA30285.1| putative chlorophyll A-B binding protein type I [Cupressus
sempervirens]
Length = 134
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 61/113 (53%), Gaps = 13/113 (11%)
Query: 94 WQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVK 143
W AG EG YLG P ++ IW +V+++G IE R LDP
Sbjct: 3 WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP-- 60
Query: 144 RLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LYPGG FDPLGLA DP L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 61 -LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMSSMFGFFVQAIVTGKGPI 112
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 95/223 (42%), Gaps = 80/223 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLG+ E L++
Sbjct: 55 LAGDYGFDPLGLGEDPESLKW--------------------------------------- 75
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEAL--TGV----AWQDAGKVELVEGSSYLGQPLP 114
+ + EL+H R+AMLG G + + L TG+ W +AG V+ S+
Sbjct: 76 ----YVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFAST------- 124
Query: 115 FSLTTLIWIEVIVIGYIEYQR--------------------NAELDPVKRLYPGG-YFDP 153
TLI ++ +++G+ E +R A L+ ++ YPGG +P
Sbjct: 125 ---KTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNP 181
Query: 154 LGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LGLA D + +L EIK+ RLAM+A L F +QA+ T GPI
Sbjct: 182 LGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPI 224
>gi|87313219|gb|ABD37906.1| light-harvesting chlorophyll-a/b binding protein Lhca4
[Chlamydomonas incerta]
Length = 237
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 34/171 (19%)
Query: 52 PLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEG 105
PL + L +++ ELIH R AM G G + LT W DAGKV +
Sbjct: 50 PLGLGKDPVALAWYQQAELIHCRTAMTGVAGILIPGLLTKAGALNVPEWYDAGKVAIENS 109
Query: 106 SSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAEL-------DPVKRL------------- 145
+ G TL+ +++ + G++E +R ++ +P L
Sbjct: 110 FAPWG--------TLLAVQLFLCGFVEVKRWQDIRKPGSQGEPGSFLGFESSLKGTSEVG 161
Query: 146 YPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
YPGG FDPLGL+ + K + +L E+K+ RLAM+AFL F Q TG GP+
Sbjct: 162 YPGGPFDPLGLSKEADKWADWKLKEVKNGRLAMLAFLGFVAQKYATGAGPV 212
>gi|87313215|gb|ABD37904.1| light-harvesting chlorophyll-a/b binding protein Lhca2
[Chlamydomonas incerta]
Length = 254
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 99/223 (44%), Gaps = 48/223 (21%)
Query: 4 DRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQ 63
DR D L +G L Y +L + + +G LL + G ++P LQ Y+EV
Sbjct: 26 DRSKDQLYVGASQSSLAYLDGTLPGDFGFDPLG-LLDPVNSGGFIEPKWLQ-YSEV---- 79
Query: 64 RFRECELIHGRWAMLGTLGAIAVEAL---------TGVAWQDAGKVELVEG-SSYLGQPL 113
IH RWAMLG G IA E L T + W ++G + Y P
Sbjct: 80 -------IHARWAMLGAAGCIAPEVLGAAGLIPDATNIKWFESGVIPPAGSYDGYWADPY 132
Query: 114 PFSLTTLIWIEVIVIGYIEYQRNAE--------------LDPVKR-----LYPGG-YFDP 153
T+ ++E++ + + E +R + L+ + + YPGG +F+
Sbjct: 133 -----TIFFVEIVAMQFAELRRLQDFRYPGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNL 187
Query: 154 LGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
L ++ L+L EIK+ RLAM+A L +G QA TGKGP
Sbjct: 188 FNLGKTEAAMKELKLKEIKNGRLAMLAMLGYGAQAVLTGKGPF 230
>gi|914283|gb|AAB34067.1| light-harvesting complex b type 2, Lhcb2 [Ginkgo biloba, 3-4 week
old seedlings, Peptide Partial, 130 aa]
Length = 130
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 11/100 (11%)
Query: 105 GSSYLGQPLPFSLTTL--IW-IEVIVIGYIEYQR-----NAELDPVKRLYPGGYFDPLGL 156
G YLG P ++ IW +V+++G++E R + LDP LYPGG FDPLGL
Sbjct: 8 GLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRIAGDPSGGLDP---LYPGGAFDPLGL 64
Query: 157 ASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
A DP L++ E+K+ RLAM + F +QA TGKGPI
Sbjct: 65 ADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 104
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 95/223 (42%), Gaps = 80/223 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLG+ E L++
Sbjct: 63 LAGDYGFDPLGLGEDPESLKW--------------------------------------- 83
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEAL--TGV----AWQDAGKVELVEGSSYLGQPLP 114
+ + EL+H R+AMLG G + + L TG+ W +AG V+ S+
Sbjct: 84 ----YVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFAST------- 132
Query: 115 FSLTTLIWIEVIVIGYIEYQR--------------------NAELDPVKRLYPGG-YFDP 153
TLI ++ +++G+ E +R A L+ ++ YPGG +P
Sbjct: 133 ---KTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGIEAALEGLEPGYPGGPLLNP 189
Query: 154 LGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LGLA D + +L EIK+ RLAM+A L F +QA+ T GPI
Sbjct: 190 LGLAKDVKNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPI 232
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 93/219 (42%), Gaps = 79/219 (36%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLG E L++
Sbjct: 75 GDFGFDPLGLGSDPELLKW----------------------------------------- 93
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFS 116
F + EL+H RWAML G + E L + +W DAG E Y P
Sbjct: 94 --FAQAELMHARWAMLAVFGILVPELLEKIGYIENFSWYDAGARE------YFVDP---- 141
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL----------------DPVKRL-YPGG-YFDPLGLAS 158
TTL +++ ++G++E +R A++ +P + YPGG +FDP+
Sbjct: 142 -TTLFVVQMGLMGWVEGRRWADMVNPGSVDIEPKVPHITNPKPDVGYPGGLWFDPMMWGR 200
Query: 159 -DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
P + L+ EIK+ RLAM+AF+ F QA +TG+GPI
Sbjct: 201 GSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGEGPI 239
Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGI 186
PG + FDPLGL SDP L+ AE+ HAR AM+A +FGI
Sbjct: 74 PGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLA--VFGI 112
>gi|302829360|ref|XP_002946247.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
gi|300269062|gb|EFJ53242.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
Length = 256
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 74/147 (50%), Gaps = 18/147 (12%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL-TGVAWQDAG-KVELVEGSSYLGQPLPFSLTT 119
L+ FRE EL+H RWAM G + E + V W AG +VE G L L F
Sbjct: 63 LKWFRESELVHSRWAMAAVAGILVQEIVRPDVFWYSAGSQVESPLGPLGL---LAFEFFC 119
Query: 120 LIWIEVIVIGYIEYQRNAELDPV---------KRLYPGGYFDPLGLASDPGKLENLQLAE 170
+ W+E+ + + + DP+ + YPGG F P PG L L++ E
Sbjct: 120 MHWVELRRWQDLRKPGSVDQDPIFSQYKLPPHEPGYPGGVFAPF----IPGDLAELKVKE 175
Query: 171 IKHARLAMVAFLIFGIQAAFTGKGPIS 197
IK+ RLAM+AF+ F + A TGKGPI+
Sbjct: 176 IKNGRLAMLAFVGFVMAAQVTGKGPIA 202
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 95/223 (42%), Gaps = 80/223 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLG+ E L++
Sbjct: 63 LAGDYGFDPLGLGEDPESLKW--------------------------------------- 83
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEAL--TGV----AWQDAGKVELVEGSSYLGQPLP 114
+ + EL+H R+AMLG G + + L TG+ W +AG V+ S+
Sbjct: 84 ----YVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFAST------- 132
Query: 115 FSLTTLIWIEVIVIGYIEYQR--------------------NAELDPVKRLYPGG-YFDP 153
TLI ++ +++G+ E +R A L+ ++ YPGG +P
Sbjct: 133 ---KTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNP 189
Query: 154 LGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LGLA D + +L EIK+ RLAM+A L F +QA+ T GPI
Sbjct: 190 LGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPI 232
>gi|398313945|emb|CCI55399.1| PSI antenna protein Lhca4 [Marchantia polymorpha]
Length = 249
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 75/164 (45%), Gaps = 38/164 (23%)
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLP 114
L + + EL +GRWAMLG G + E LT + W DAGKVE +S
Sbjct: 85 ALNWYVQAELQNGRWAMLGVAGMLVPEVLTKIGLINAPLWYDAGKVEYFAPAS------- 137
Query: 115 FSLTTLIWIEVIVIGYIEYQR-----------------NAELDPVKRLYPGGYFDPLGLA 157
TL IE I+ Y+E +R + +L P YPGG F+PL
Sbjct: 138 ----TLFVIEFILFHYVEIRRWQDIKYPGSVSQDPFFKSYKLPPGDVGYPGGIFNPLKFP 193
Query: 158 SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
++ + + EI + RLAM+AFL +Q+ TG GP + T
Sbjct: 194 AN----QEYKEKEIANGRLAMLAFLGMLVQSKLTGAGPFENLLT 233
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 95/223 (42%), Gaps = 80/223 (35%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLG+ E L++
Sbjct: 63 LAGDYGFDPLGLGEDPESLRW--------------------------------------- 83
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEAL--TGV----AWQDAGKVELVEGSSYLGQPLP 114
+ + EL+H R+AMLG G + + L TG+ W +AG V+ S+
Sbjct: 84 ----YVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFAST------- 132
Query: 115 FSLTTLIWIEVIVIGYIEYQR--------------------NAELDPVKRLYPGG-YFDP 153
TLI ++ +++G+ E +R A L+ ++ YPGG +P
Sbjct: 133 ---KTLIVVQFLLMGFAETKRYVDYVSPGSQAKEGSFFFGIEAALEGLEPGYPGGPLLNP 189
Query: 154 LGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LGLA D + +L EIK+ RLAM+A L F +QA+ T GPI
Sbjct: 190 LGLAKDIKNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPI 232
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 93/219 (42%), Gaps = 79/219 (36%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLG E L++
Sbjct: 75 GDFGFDPLGLGSDPELLKW----------------------------------------- 93
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFS 116
F + EL+H RWAML G + E L + +W DAG E Y P
Sbjct: 94 --FAQAELMHSRWAMLAVFGILVPELLERIGYIENFSWYDAGTRE------YFVDP---- 141
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL----------------DPVKRL-YPGG-YFDPLGLAS 158
TTL +++ ++G++E +R A++ +P + YPGG +FDP+
Sbjct: 142 -TTLFVVQMGLMGWVEGRRWADIVNPGSVDIEPKVPHVTNPKPDVGYPGGLWFDPMMWGR 200
Query: 159 -DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
P + L+ EIK+ RLAM+AF+ F QA +TG+GPI
Sbjct: 201 GSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGEGPI 239
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGI 186
PG + FDPLGL SDP L+ AE+ H+R AM+A +FGI
Sbjct: 74 PGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLA--VFGI 112
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 84/217 (38%), Gaps = 81/217 (37%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGL + E L++
Sbjct: 72 GDNGFDPLGLAEDPENLRW----------------------------------------- 90
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPFS 116
+ + EL++GRWAMLG G + E T W DAGK E SS
Sbjct: 91 --YVQAELVNGRWAMLGVAGMLLPEVFTKFGIINAPQWYDAGKSEYFASSS--------- 139
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL--------DPVKRL---------YPGGYFDPLGLASD 159
TL IE I+ Y+E +R ++ DP+ + YPG F+PL A
Sbjct: 140 --TLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPHECGYPGSVFNPLNFAPT 197
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
E E+ + RLAM+AFL F +Q TGKGP
Sbjct: 198 LEAKEK----ELANGRLAMLAFLGFIVQHNVTGKGPF 230
>gi|255087370|ref|XP_002505608.1| lycopene beta cyclase [Micromonas sp. RCC299]
gi|226520878|gb|ACO66866.1| lycopene beta cyclase [Micromonas sp. RCC299]
Length = 1447
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 85/164 (51%), Gaps = 37/164 (22%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEAL---------------TGVAW--QDAGKVELVE 104
+ + RE ELIHGRWAML +G + E+ T + W ++G EL
Sbjct: 1286 IMKLRERELIHGRWAMLAAIGVLVPESTARLSLFGTPGQHWWNTHIEWTGTNSGIPEL-- 1343
Query: 105 GSSYLGQPLPFSLTTLIWI--------EVIVIGYIEYQRNAELDPVKRLYPGGY-FDPLG 155
+YLG+ +P+ + L I E++ G +E + +LD RLYPGG FDPLG
Sbjct: 1344 --TYLGENIPWGVFWLPIIHLPLFFVAEMLRTGRLEVEAFKDLD---RLYPGGKLFDPLG 1398
Query: 156 LA---SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ SD +L+ L+ EI+H RLAM+A F ++A G GP+
Sbjct: 1399 IGGGVSDE-ELKILKTIEIQHCRLAMIASFGFIVEALAWGAGPL 1441
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 90/219 (41%), Gaps = 79/219 (36%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLG E L++
Sbjct: 73 GDFGFDPLGLGSDPELLRW----------------------------------------- 91
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALT------GVAWQDAGKVELVEGSSYLGQPLPFS 116
F + EL+H RWAML G + E L +W DAG E + P
Sbjct: 92 --FAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAQE------FFADP---- 139
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL----------------DPVKRL-YPGG-YFDPLGLAS 158
TTL +++ ++G++E +R A+L P + YPGG +FDP
Sbjct: 140 -TTLFVVQLALMGWVEGRRWADLINPGCVDIQLTFPNKAKPKPDVGYPGGLWFDPFMWGR 198
Query: 159 -DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
P + L+ EIK+ RLAM+AF+ F QA +TG+GPI
Sbjct: 199 GSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGEGPI 237
Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVA 180
PG + FDPLGL SDP L AE+ H+R AM+A
Sbjct: 72 PGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLA 106
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 85/193 (44%), Gaps = 32/193 (16%)
Query: 37 ELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-- 92
L+G I P L F +++E EL+H RWAMLG +G + E AL GV
Sbjct: 194 HLIGAIAGDAGFDPLGLSKEQASFA--KYQEAELLHARWAMLGVVGCLVPELLALRGVDL 251
Query: 93 ---AWQDAGKVEL----------VEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNA-- 137
W G +L +EG G+ + + + +++G EY R
Sbjct: 252 GEPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQ---GIGLIAACQAVLMGGPEYARYVGI 308
Query: 138 -ELDPVKRLYPG-------GYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAA 189
L+PV PG G FDPL A+D + E+K+ RLAM+A L F +QAA
Sbjct: 309 RSLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVEQAVKEVKNGRLAMLAMLGFFVQAA 368
Query: 190 FTGKGPISFVATF 202
T GP+ V F
Sbjct: 369 VTRVGPVQNVLDF 381
>gi|302851012|ref|XP_002957031.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
gi|300257587|gb|EFJ41833.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
Length = 270
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 97/226 (42%), Gaps = 54/226 (23%)
Query: 4 DRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQ 63
DR D L +G L Y +L + + +G LL + G ++P LQ Y+EV
Sbjct: 40 DRSKDQLYVGASQSSLAYLDGTLPGDFGFDPLG-LLDPVNSGGFVEPKWLQ-YSEV---- 93
Query: 64 RFRECELIHGRWAMLGTLGAIAVEAL---------TGVAWQDAGKVELVEG-SSYLGQPL 113
IHGRWAMLG G IA E L T + W ++G + Y P
Sbjct: 94 -------IHGRWAMLGAAGCIAPEILGAAGLIPEKTNIVWYESGVIPPAGSYDGYWADPY 146
Query: 114 PFSLTTLIWIEVIVIGYIEYQRNAEL----------------------DPVKRLYPGG-Y 150
T+ +IE++ + + E +R + DP YPGG +
Sbjct: 147 -----TIFFIEIVAMQFAELRRLQDFRYPGSMGKQYFLGLEKIFAGSGDPA---YPGGPF 198
Query: 151 FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
F+ L ++ L+L EIK+ RLAM+A L +G QA T +GP
Sbjct: 199 FNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGYGAQATLTREGPF 244
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 96/224 (42%), Gaps = 82/224 (36%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLG+ E L++
Sbjct: 63 LAGDYGFDPLGLGEDPESLKW--------------------------------------- 83
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEAL--TGV----AWQDAGKVELVEGSSYLGQPLP 114
+ + EL+H R+AMLG G + + L TG+ W +AG V+
Sbjct: 84 ----YVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKF-----------D 128
Query: 115 FSLT-TLIWIEVIVIGYIEYQR--------------------NAELDPVKRLYPGG-YFD 152
F+ T TLI ++ +++G+ E +R A L+ ++ YPGG +
Sbjct: 129 FACTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLN 188
Query: 153 PLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
PLGLA D + +L EIK+ RLAM+A L F +QA+ T GPI
Sbjct: 189 PLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPI 232
>gi|303280201|ref|XP_003059393.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226459229|gb|EEH56525.1| prasinophyte specific chlorophyll a/b-binding protein, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 263
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 74/146 (50%), Gaps = 22/146 (15%)
Query: 69 ELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGS--SYLGQPLPFS----LTTLIW 122
E+IHGR+AMLG GA A E L G W AG+ + SYL S L +I
Sbjct: 87 EIIHGRFAMLGVTGAWAQENLVGTPWFMAGEECTFDECNLSYLNNEFTPSYDGALIGIIA 146
Query: 123 IEVIVIGYIEYQRNAELDP------VKRLYPGGYFDPLGLASDPGK--------LENLQL 168
IEV ++GY+E R ++ ++PGG FDPL + GK L+ L++
Sbjct: 147 IEVALMGYVEGARTGLIENPFDDVVAGSVFPGGRFDPLNFSE--GKEANFFGEDLDTLKI 204
Query: 169 AEIKHARLAMVAFLIFGIQAAFTGKG 194
E+KH RLAM+A+L Q+ T G
Sbjct: 205 KELKHCRLAMLAWLGILAQSVSTNPG 230
>gi|47026929|gb|AAT08685.1| chloroplast chlorophyll a/b-binding protein [Hyacinthus orientalis]
Length = 156
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 65/117 (55%), Gaps = 13/117 (11%)
Query: 94 WQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVK 143
W AG EG YLG P ++ IW +V+++G +E R A +DP
Sbjct: 21 WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLLMGAVEGYRVAGGPLGEVVDP-- 78
Query: 144 RLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
LYPGG FDPLGLA DP L++ EIK+ RLAM++ F +QA TGKGP+ +A
Sbjct: 79 -LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMLSMFGFFVQAIVTGKGPLENLA 134
>gi|28630973|gb|AAO45885.1| chlorophyll a/b-binding protein precursor [Citrus limon]
Length = 216
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 66/129 (51%), Gaps = 20/129 (15%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVE--ALTGV-----AWQDAGKVELVEGS-SYLGQPL 113
+ RE E+IH RWAMLG LG + E A GV W AG EG YLG P
Sbjct: 90 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
Query: 114 PFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVKRLYPGGYFDPLGLASDPGKLE 164
++ IW +V+++G +E R A DP LYPGG FDPLGLA DP
Sbjct: 150 LIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPKAFA 206
Query: 165 NLQLAEIKH 173
L++ EIK+
Sbjct: 207 ELKVKEIKN 215
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 90/219 (41%), Gaps = 79/219 (36%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLG E L++
Sbjct: 43 GDFGFDPLGLGSDPELLRW----------------------------------------- 61
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALT------GVAWQDAGKVELVEGSSYLGQPLPFS 116
F + EL+H RWAML G + E L +W DAG E + P
Sbjct: 62 --FAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAQE------FFADP---- 109
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL----------------DPVKRL-YPGG-YFDPLGLAS 158
TTL +++ ++G++E +R A+L P + YPGG +FDP
Sbjct: 110 -TTLFVVQLALMGWVEGRRWADLINPGCVDIQLTFPNKAKPKPDVGYPGGLWFDPFMWGR 168
Query: 159 -DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
P + L+ EIK+ RLAM+AF+ F QA +TG+GPI
Sbjct: 169 GSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGEGPI 207
Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVA 180
PG + FDPLGL SDP L AE+ H+R AM+A
Sbjct: 42 PGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLA 76
>gi|307110650|gb|EFN58886.1| hypothetical protein CHLNCDRAFT_29899 [Chlorella variabilis]
Length = 266
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 77/153 (50%), Gaps = 30/153 (19%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLI 121
L F E E +H RWAMLG G + Q+ + ++ +S + LPF +T L+
Sbjct: 73 LAWFAESERVHCRWAMLGVAGILV---------QELVRPDVFWYTSAVDVELPFDITGLV 123
Query: 122 WIEVIVIGYIEYQRNAEL--------DPV---------KRLYPGGYFDPLGLASDPGKLE 164
E+ V+ ++E +R ++ DP+ + YPGG F P PG +E
Sbjct: 124 AFELFVMHWVESRRGYDIKNPGSMDQDPIFSNFKLPSHEPGYPGGIFAPF----VPGSME 179
Query: 165 NLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197
L++ EIK+ RLAM+AF+ F + A +G P++
Sbjct: 180 ELKVKEIKNGRLAMLAFIGFTMAAQISGLNPLA 212
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 79/163 (48%), Gaps = 38/163 (23%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPF 115
L+ + + EL +GRWAM+G G + E LT + W DAGKVE +S
Sbjct: 84 LKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVINAPLWYDAGKVEYFAPAS-------- 135
Query: 116 SLTTLIWIEVIVIGYIEYQRNAEL--------DPVKR---------LYPGGYFDPLGLAS 158
TL IE ++ Y+E +R ++ DP+ + YPGG F+PL +
Sbjct: 136 ---TLFVIEFLMFHYVEVRRWQDIKYPGSVNQDPIFKGYSLPPNEVGYPGGIFNPLNFPA 192
Query: 159 DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
+ E + E+ + RLAM+AFL F IQ+ T +GP + T
Sbjct: 193 N----EEYKEKELANGRLAMLAFLGFIIQSNVTHQGPFENLLT 231
>gi|303290578|ref|XP_003064576.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226454174|gb|EEH51481.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 286
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 36/162 (22%)
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEAL---------TGVAWQDAGKVELVEGSSYLGQPL 113
Q E+IHGRWAMLG G +A E L TG+ W +G + Y P+
Sbjct: 103 QWLAYSEVIHGRWAMLGVAGIVAPEILGQAGLIPESTGLVWFTSGAIPPQGTFDYWANPM 162
Query: 114 PFSLTTLIWIEVIVIGYIEYQRNAEL--------DPV-----------KRLYPGG-YFDP 153
T+ W+ + ++ + E +R + P+ YPGG YF+
Sbjct: 163 -----TIFWVNMCMMNFAEIKRGQDYWYPGSQAEQPLMGWEKGFAGSGNPAYPGGKYFNF 217
Query: 154 LGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGP 195
GL D + +Q EIK+ RLAM+AFL +QA TG+GP
Sbjct: 218 AGLGKD--DMAKMQKKEIKNGRLAMMAFLGCMVQAVVTGEGP 257
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 34/161 (21%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPF 115
L R+ EL+H RWAM+G G + LT + W +AGKV S +PF
Sbjct: 34 LAWMRQAELMHCRWAMMGVAGILVPALLTKLGAMNVPVWFEAGKVANDNSS------VPF 87
Query: 116 SLTTLIWIEVIVIGYIEYQRNAEL---------------DPVKRL---YPGG-YFDPLGL 156
S L+ +E + +G++E +R ++ D K YPGG +FDP G
Sbjct: 88 S--ALLMVEFLAMGFVETKRWYDIKSPGSQGDGSIFGITDDFKGKSVGYPGGTFFDPFGF 145
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ + LQ+ EI + RLAMVA + F Q A TGKGP+
Sbjct: 146 SKGSEESYKTLQVKEIANGRLAMVAMVGFWAQYAATGKGPV 186
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 79/163 (48%), Gaps = 38/163 (23%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLPF 115
L+ + + EL +GRWAM+G G + E LT + W DAGKVE +S
Sbjct: 84 LKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVINAPLWYDAGKVEYFAPAS-------- 135
Query: 116 SLTTLIWIEVIVIGYIEYQRNAEL--------DPVKR---------LYPGGYFDPLGLAS 158
TL IE ++ Y+E +R ++ DP+ + YPGG F+PL +
Sbjct: 136 ---TLFVIEFLMFHYVEVRRWQDIKYPGSVNQDPIFKGYSLPPNEVGYPGGIFNPLNFPA 192
Query: 159 DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
+ E + E+ + RLAM+AFL F IQ+ T +GP + T
Sbjct: 193 N----EEYKEKELANGRLAMLAFLGFIIQSNVTHQGPFENLLT 231
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 91/219 (41%), Gaps = 79/219 (36%)
Query: 3 GDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGL 62
GD GFDPLGLG E L++
Sbjct: 81 GDFGFDPLGLGSDPELLKW----------------------------------------- 99
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFS 116
+ EL+H RWAMLG G + E L + +W +AG VE Y P
Sbjct: 100 --LAQAELMHARWAMLGVSGILIPEILEKIGYVKNFSWYNAGSVE------YFADP---- 147
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL----------------DPVKRL-YPGG-YFDPLGLAS 158
TTL +++ ++G++E +R A++ +P + YPGG +FDP+
Sbjct: 148 -TTLFIVQLALMGWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGR 206
Query: 159 -DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
P + L+ EIK+ RLAM+AFL F QA + G PI
Sbjct: 207 GSPEPVMVLRTKEIKNGRLAMLAFLGFCFQAVYVGGSPI 245
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMV 179
PG + FDPLGL SDP L+ L AE+ HAR AM+
Sbjct: 80 PGDFGFDPLGLGSDPELLKWLAQAELMHARWAML 113
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 81/160 (50%), Gaps = 40/160 (25%)
Query: 69 ELIHGRWAMLGTLGAIAVEALT--GVA------WQDAGKVELVEGSS--YLGQPLPFSLT 118
E++H RWAML LG + E L G+ W G +L +G + YLG
Sbjct: 147 EILHCRWAMLAALGVVIPELLDLFGIVHFVEPVWWKVGYAKL-QGDTLDYLG-------I 198
Query: 119 TLIWIE----VIVIGYI--------EYQRNAELDPVKRL---------YPGG-YFDPLGL 156
T + I VIVI EY R ++ ++ L YPGG FDPLGL
Sbjct: 199 TGLRIAGGQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGL 258
Query: 157 ASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ DP E L++ EIK+ RLAMVA+L F +QAA TGKGP+
Sbjct: 259 SKDPVGFEELKVKEIKNGRLAMVAWLGFYLQAAVTGKGPV 298
>gi|375152106|gb|AFA36511.1| light harvesting chlorophyll a/b-binding protein Lhcb1, partial
[Lolium perenne]
Length = 155
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 64/117 (54%), Gaps = 13/117 (11%)
Query: 94 WQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQRNAE------LDPVK 143
W AG EG YLG P ++ IW +V+++G +E R A +DP
Sbjct: 20 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDP-- 77
Query: 144 RLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVA 200
LYPGG FDPLGLA DP L++ E+K+ RLAM + F +QA TGKGP+ +A
Sbjct: 78 -LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 133
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 94/227 (41%), Gaps = 79/227 (34%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLG+ + L++
Sbjct: 19 LAGDFGFDPLGLGQDPQDLRW--------------------------------------- 39
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------WQDAGKVELVEGSSYLGQPLP 114
+ + EL+H R+AM G G + + L W +AG + +
Sbjct: 40 ----YVQAELVHSRFAMAGVAGILFTDLLRASGRTDIPVWFEAGATKFDFADT------- 88
Query: 115 FSLTTLIWIEVIVIGYIEYQR-------------------NAELDPVKRLYPGG-YFDPL 154
TTL +++I++G++E +R A + ++ YPGG F+PL
Sbjct: 89 ---TTLFVVQLILMGFVETKRWMDIVKPGSQAAEDSFFGFEAAFEGLETGYPGGPLFNPL 145
Query: 155 GLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
G A+DP K + L+ EIK+ RLAMVA + F +QA T GPI + T
Sbjct: 146 GFANDPTKPQPLRWKEIKNGRLAMVAMVGFMVQAYVTKTGPIENLLT 192
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 36/160 (22%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPF 115
L+ + EL+H RWAMLG G + E L + +W +AG E Y P
Sbjct: 89 LKWLAQAELMHARWAMLGVSGILIPELLEKMGYVENYSWYEAGTQE------YFADP--- 139
Query: 116 SLTTLIWIEVIVIGYIEYQRNAEL----------------DPVKRL-YPGG-YFDPLGLA 157
TTL +++ ++G++E +R A+L +P + YPGG +FDP+
Sbjct: 140 --TTLFIVQLALMGWVEGRRWADLVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMMWG 197
Query: 158 S-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
P + L+ EIK+ RLAM+AF+ F QA +TG+GPI
Sbjct: 198 RGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGQGPI 237
Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMV 179
PG + FDP+GL SDP L+ L AE+ HAR AM+
Sbjct: 72 PGDFGFDPIGLGSDPELLKWLAQAELMHARWAML 105
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 94/226 (41%), Gaps = 79/226 (34%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLG E L++
Sbjct: 77 LPGDFGFDPLGLGSDPETLKW--------------------------------------- 97
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
F + EL+H RWAML G + E + +W DAG E Y P
Sbjct: 98 ----FAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSRE------YFADP-- 145
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAELD-----------PVKRL------YPGG-YFDPLGL 156
TTL+ ++ ++G++E +R A+L P K+ YPGG +FDP+
Sbjct: 146 ---TTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMW 202
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
P + L+ EIK+ RLAM+AF+ QA +TG+GP+ +A
Sbjct: 203 GRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAA 248
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 34/156 (21%)
Query: 69 ELIHGRWAMLGTLGAIAVEAL---------TGVAWQDAGKVELVEGSSYLGQPLPFSLTT 119
E+I+GR+AMLG +GAIA E L T + W G + Y P T
Sbjct: 101 EIINGRYAMLGAVGAIAPEILGKAGLIPPETALPWFKTGVIPPAGTYDYWADPY-----T 155
Query: 120 LIWIEVIVIGYIEYQRNAELDPV-------------------KRLYPGG-YFDPLGLASD 159
L E+ ++G+ E++R + +YPGG F+PLG D
Sbjct: 156 LFVFELALMGFAEHRRFQDFQKPGCLSKQYFLGFEKYFEGSGNPIYPGGPLFNPLGFGKD 215
Query: 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGP 195
L++L+L E+K+ RLAM+A L + +QA TG GP
Sbjct: 216 EKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGP 251
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 94/226 (41%), Gaps = 79/226 (34%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLG E L++
Sbjct: 77 LPGDFGFDPLGLGSDPETLKW--------------------------------------- 97
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
F + EL+H RWAML G + E + +W DAG E Y P
Sbjct: 98 ----FAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSRE------YFADP-- 145
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAELD-----------PVKRL------YPGG-YFDPLGL 156
TTL+ ++ ++G++E +R A+L P K+ YPGG +FDP+
Sbjct: 146 ---TTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAMADVGYPGGFWFDPMMW 202
Query: 157 AS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
P + L+ EIK+ RLAM+AF+ QA +TG+GP+ +A
Sbjct: 203 GRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAA 248
>gi|302854483|ref|XP_002958749.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
gi|300255924|gb|EFJ40205.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
Length = 2775
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 61/113 (53%), Gaps = 13/113 (11%)
Query: 94 WQDAGKVELVEGS-SYLGQPL---PFSLTTLIWIEVIVIGYIE-YQRNAE-----LDPVK 143
W AG EG YLG P ++ + +VI++G +E Y+ N LDP
Sbjct: 2635 WFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYRVNGGPAGEGLDP-- 2692
Query: 144 RLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LYPG FDPLGLA DP L++ EIK+ RLAM + F +QA TGKGPI
Sbjct: 2693 -LYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 2744
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 36/160 (22%)
Query: 62 LQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPF 115
L+ + EL+H RWAMLG G + E L + +W +AG VE Y P
Sbjct: 97 LKWLAQAELMHARWAMLGVSGILIPEILEKIGYVKNFSWYNAGSVE------YFADP--- 147
Query: 116 SLTTLIWIEVIVIGYIEYQRNAEL----------------DPVKRL-YPGG-YFDPLGLA 157
TTL +++ ++G++E +R A++ +P + YPGG +FDP+
Sbjct: 148 --TTLFIVQLALMGWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWG 205
Query: 158 S-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
P + L+ EIK+ RLAM+AFL F QA + G PI
Sbjct: 206 RGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQAVYVGGSPI 245
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 147 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMV 179
PG + FDPLGL SDP L+ L AE+ HAR AM+
Sbjct: 80 PGNFGFDPLGLGSDPELLKWLAQAELMHARWAML 113
>gi|303281804|ref|XP_003060194.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
gi|226458849|gb|EEH56146.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
Length = 391
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 93/233 (39%), Gaps = 72/233 (30%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GDRGFDPL LGK E L
Sbjct: 195 LAGDRGFDPLRLGKTPESLA---------------------------------------- 214
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALT-------GVA-----WQDAGKVELVEGSSY 108
R E EL+H RWAML +G EAL+ G A W G +L S
Sbjct: 215 ---RGVELELLHARWAMLAVVGVAVPEALSIAGALPEGAALAEPVWWKVGAAKLNGESLN 271
Query: 109 LGQPLPF------SLTTLIWIEVIVIGYIEYQRNA---ELDPV------KRLYPGGY-FD 152
G F + + + +++G EY R L+PV YPGG FD
Sbjct: 272 YGGLGGFVIAGKQGVAVIAACQAVLMGGPEYARYVGIRSLEPVGVYLPGDANYPGGAPFD 331
Query: 153 PLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS-FVATFNQ 204
P GL+ D + ++ EI+H RLAMVA L QA TG+GP++ +V+ F +
Sbjct: 332 PFGLSDDADRFARQKVIEIEHGRLAMVAMLGCFAQAIVTGEGPVANWVSVFRR 384
>gi|307106432|gb|EFN54678.1| hypothetical protein CHLNCDRAFT_31627 [Chlorella variabilis]
Length = 246
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 87/202 (43%), Gaps = 67/202 (33%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
M+GD GFDPL LG S D+++
Sbjct: 49 MLGDYGFDPLRLG-----------SKDKDV------------------------------ 67
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTL 120
L+ +RE EL +GRWAM G + + + W +AG VE S F L TL
Sbjct: 68 -LKYYREGELTNGRWAMAAVAGILFTDLVGLGPWWEAGAK--VESS--------FDLKTL 116
Query: 121 IWIEVIVIGYIE------YQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHA 174
I +E++ +E Y++ E L P FDPL + SD +L+ E+K+
Sbjct: 117 IIVEIVTFAILEGFRAKAYEKTGETG----LGPFAPFDPLNMRSDETRLK-----ELKNG 167
Query: 175 RLAMVAFLIFGIQAAFTGKGPI 196
RLAM+A L F QAA GKGPI
Sbjct: 168 RLAMLAILGFSSQAAVQGKGPI 189
>gi|398313943|emb|CCI55398.1| PSI antenna protein Lhca3 [Marchantia polymorpha]
Length = 279
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 40/163 (24%)
Query: 66 RECELIHGRWAMLGTLGAIAVEAL---------TGVAWQDAGKVELVEGSSYLGQPLPFS 116
R E+I+GR+AMLG GAIA E T + W G + + SY P
Sbjct: 103 RYAEIINGRFAMLGAAGAIAPEIFGKIGLIPQETAIPWFQTGVIPPLGQYSYWADPY--- 159
Query: 117 LTTLIWIEVIVIGYIEYQRNAEL----------------------DPVKRLYPGG-YFDP 153
TL +E+ ++G+ E++R + DP YPGG F+
Sbjct: 160 --TLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGFEKVLGGSGDPA---YPGGPLFNF 214
Query: 154 LGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
LG D +++L++ E+K+ RLAM+A L + IQA FTG GP
Sbjct: 215 LGFGRDEKSMKDLKVKEVKNGRLAMLAVLGYFIQAIFTGVGPF 257
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 93/222 (41%), Gaps = 80/222 (36%)
Query: 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVF 60
+ GD GFDPLGLG E L+++
Sbjct: 76 LPGDFGFDPLGLGSDPESLRWNV------------------------------------- 98
Query: 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLP 114
+ +L+H RWAMLG G E LT + +W AG+ + +
Sbjct: 99 ------QADLVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEHQYFTDT-------- 144
Query: 115 FSLTTLIWIEVIVIGYIEYQRNAEL---------DPV---------KRLYPGG-YFDPLG 155
TTL IE+I+IG+ E +R A++ DP+ +R P G + DPLG
Sbjct: 145 ---TTLFIIELILIGWAEGRRWADIIINPGCVNTDPIFPQQQVHGHRRGEPCGLWLDPLG 201
Query: 156 LAS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
+ P K++ L+ EIK+ R+AM+A + QA TG GPI
Sbjct: 202 WGTVSPEKIKELRTKEIKNGRVAMLAVMGAWFQAEHTGTGPI 243
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 26/170 (15%)
Query: 52 PLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGV-AWQDAGKVELVEGSSYLG 110
PL+ + L+ +++ EL +GRWAML G + V+ L + A A + S +
Sbjct: 63 PLRLGEDPAALKWYQQAELQNGRWAMLAAAGILFVDLLGHLGAGGPAAATPWFKASDFTY 122
Query: 111 QPLPFSLT-TLIWIEVIVIGYIEYQRNAEL--------DPV----------KRLYPGGYF 151
F+ T TL +E+++ ++E +R ++ DP+ + YPGG F
Sbjct: 123 ----FAPTSTLFIVELLLFAWVEVRRYQDMVKPGSTNQDPIFSQYSLPSGNEPGYPGGIF 178
Query: 152 DPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVAT 201
DPLG + G + L+L EIK+ARLAM+A L F +QA TGK P+ +++
Sbjct: 179 DPLGYSK--GNMAELKLKEIKNARLAMLAVLGFFVQAKTTGKTPLDSLSS 226
>gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 74/160 (46%), Gaps = 40/160 (25%)
Query: 69 ELIHGRWAMLGTLGAIAVEAL---------TGVAWQDAGKVELVEGSSYLGQPLPFSLTT 119
E+I+GR+AMLG GAIA E L T + W G + SY P T
Sbjct: 102 EIINGRYAMLGVAGAIAPEILGKLGLIPPETALPWFQTGVIPPAGTYSYWADPY-----T 156
Query: 120 LIWIEVIVIGYIEYQRNAEL----------------------DPVKRLYPGG-YFDPLGL 156
L +E+ ++G+ E++R + DP YPGG F+PLG
Sbjct: 157 LFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGFEKFLGGSGDPA---YPGGPIFNPLGF 213
Query: 157 ASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196
D ++ L+L E+K+ RLAM+A L F IQ TG GP
Sbjct: 214 GKDEKSMKELKLKEVKNGRLAMLAILGFFIQGLVTGVGPF 253
>gi|115769|sp|P12327.1|CB21_EUGGR RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|829262|emb|CAA29821.1| chlorophyll a/b protein (128 AA) [Euglena gracilis]
Length = 127
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 116 SLTTLIWIEVIVIGYIEYQRNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLA 169
SL ++ +V+++G +E R P + RLYPGG FDPLGLA DP L++
Sbjct: 10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVK 69
Query: 170 EIKHARLAMVAFLIFGIQAAFTGKGPI 196
EIK+ RLAM L F QA TG+GP+
Sbjct: 70 EIKNGRLAMSGMLGFYAQAIVTGEGPV 96
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 36/162 (22%)
Query: 63 QRFRECELIHGRWAMLGTLGAIAVEAL---------TGVAWQDAGKVELVEGSSYLGQPL 113
Q E+IHGRWAMLG G +A E L TG+ W +G + Y P
Sbjct: 126 QWLAYSEVIHGRWAMLGVAGVVAPEVLGGMGIIPADTGLVWFKSGAIPPQGTFDYWADP- 184
Query: 114 PFSLTTLIWIEVIVIGYIEYQRNAEL--------DPV-----------KRLYPGG-YFDP 153
TT+ W+ ++++ + E +R + P+ YPGG YF+
Sbjct: 185 ----TTIFWVNMVLMNFAEVKRGQDYWYPGSQGETPLMGWEKGFAGSGAPAYPGGKYFNF 240
Query: 154 LGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGP 195
L + +Q EIK+ RLAM+AFL +QA TG+GP
Sbjct: 241 ANLGKT--DMAKMQKKEIKNGRLAMMAFLGIAVQAVATGEGP 280
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.142 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,560,030,003
Number of Sequences: 23463169
Number of extensions: 154984331
Number of successful extensions: 313961
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 471
Number of HSP's that attempted gapping in prelim test: 308068
Number of HSP's gapped (non-prelim): 4003
length of query: 204
length of database: 8,064,228,071
effective HSP length: 136
effective length of query: 68
effective length of database: 9,168,204,383
effective search space: 623437898044
effective search space used: 623437898044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 73 (32.7 bits)