Query 028743
Match_columns 204
No_of_seqs 217 out of 1180
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 16:17:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00187 photosystem II light- 100.0 4.8E-65 1E-69 446.1 15.1 204 1-204 69-274 (286)
2 PLN00099 light-harvesting comp 100.0 2E-50 4.3E-55 347.8 13.3 143 61-203 78-225 (243)
3 PLN00025 photosystem II light 100.0 8.2E-49 1.8E-53 340.5 13.0 144 60-203 86-244 (262)
4 PLN00097 photosystem I light h 100.0 6.2E-48 1.3E-52 331.9 12.7 150 1-203 61-235 (244)
5 PLN00098 light-harvesting comp 100.0 3.5E-47 7.7E-52 331.1 12.8 132 61-203 96-253 (267)
6 PLN00048 photosystem I light h 100.0 3.3E-47 7.1E-52 330.9 11.8 160 1-203 59-248 (262)
7 PLN00171 photosystem light-ha 100.0 5.2E-47 1.1E-51 336.0 12.2 160 1-203 127-311 (324)
8 PLN00101 Photosystem I light-h 100.0 5.3E-47 1.2E-51 327.3 11.6 128 61-203 87-238 (250)
9 PLN00147 light-harvesting comp 100.0 9.1E-47 2E-51 326.4 12.5 133 61-203 79-238 (252)
10 PLN00100 light-harvesting comp 100.0 1.1E-45 2.5E-50 317.8 11.7 144 1-203 52-198 (246)
11 PLN00170 photosystem II light- 100.0 1E-45 2.2E-50 319.7 11.1 131 61-200 91-254 (255)
12 PLN00120 fucoxanthin-chlorophy 100.0 5.9E-40 1.3E-44 276.6 12.1 155 36-196 35-198 (202)
13 PF00504 Chloroa_b-bind: Chlor 100.0 2.3E-39 4.9E-44 261.6 12.1 124 61-189 25-156 (156)
14 PLN00089 fucoxanthin-chlorophy 100.0 9.1E-39 2E-43 270.5 12.7 142 45-197 54-208 (209)
15 PLN00101 Photosystem I light-h 99.6 5.2E-16 1.1E-20 134.7 4.8 54 143-196 67-121 (250)
16 PLN00098 light-harvesting comp 99.6 7.9E-16 1.7E-20 134.7 4.8 55 143-197 76-131 (267)
17 PLN00147 light-harvesting comp 99.6 2.2E-15 4.9E-20 130.9 4.5 52 143-194 59-111 (252)
18 PLN00097 photosystem I light h 99.5 9E-15 1.9E-19 126.5 4.5 53 143-195 58-111 (244)
19 PLN00171 photosystem light-ha 99.5 8.4E-15 1.8E-19 130.8 4.3 52 143-194 124-176 (324)
20 PLN00170 photosystem II light- 99.5 1.2E-14 2.6E-19 126.4 4.7 54 143-196 71-125 (255)
21 PLN00025 photosystem II light 99.5 1.2E-14 2.7E-19 126.9 4.5 51 143-193 67-118 (262)
22 PLN00100 light-harvesting comp 99.5 2.8E-14 6E-19 123.5 4.3 49 143-191 49-98 (246)
23 PLN00099 light-harvesting comp 99.4 5.3E-14 1.2E-18 121.8 3.7 50 143-192 58-108 (243)
24 PLN00187 photosystem II light- 99.4 7.9E-14 1.7E-18 123.1 4.3 51 143-193 66-160 (286)
25 PLN00048 photosystem I light h 99.4 1.6E-13 3.5E-18 120.0 4.9 53 143-196 56-115 (262)
26 PLN00089 fucoxanthin-chlorophy 99.4 2.3E-13 5E-18 115.7 5.1 48 147-194 54-103 (209)
27 PF00504 Chloroa_b-bind: Chlor 99.4 5E-13 1.1E-17 107.8 5.3 49 144-193 7-56 (156)
28 PLN00120 fucoxanthin-chlorophy 99.2 8.8E-12 1.9E-16 105.5 2.0 45 145-189 41-87 (202)
29 PHA02337 putative high light i 98.3 5.2E-07 1.1E-11 56.0 3.2 28 168-195 4-31 (35)
30 PLN00084 photosystem II subuni 98.1 2.3E-06 5.1E-11 70.7 2.7 39 162-200 131-170 (214)
31 PLN00014 light-harvesting-like 97.8 1.8E-05 3.9E-10 68.1 3.3 37 166-202 159-195 (250)
32 PHA02337 putative high light i 97.6 3.9E-05 8.5E-10 47.7 1.9 27 66-92 3-29 (35)
33 PLN00014 light-harvesting-like 96.0 0.0031 6.6E-08 54.6 1.4 28 66-93 160-187 (250)
34 PLN00084 photosystem II subuni 94.1 0.028 6.1E-07 46.9 1.8 29 62-90 132-160 (214)
35 KOG0593 Predicted protein kina 76.7 1.4 3.1E-05 40.4 1.6 37 56-93 158-200 (396)
36 PLN02449 ferrochelatase 57.2 7.8 0.00017 37.2 2.3 21 176-196 463-483 (485)
37 KOG0659 Cdk activating kinase 30.1 26 0.00057 31.7 1.2 33 61-94 163-201 (318)
38 PF01524 Gemini_V1: Geminiviru 27.8 31 0.00067 25.2 1.0 13 69-81 11-23 (78)
39 KOG0600 Cdc2-related protein k 23.1 39 0.00084 33.0 1.0 64 28-93 247-318 (560)
40 PHA03159 hypothetical protein; 23.0 69 0.0015 25.8 2.2 18 172-189 72-90 (160)
No 1
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=4.8e-65 Score=446.07 Aligned_cols=204 Identities=76% Similarity=1.293 Sum_probs=190.1
Q ss_pred CCCCCCCCCCCCCCCccccccccchhhhhhhccccccccccccCCCCCCCCCCCCCcchhhHHHHHHhHhhccchhhhhh
Q 028743 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGT 80 (204)
Q Consensus 1 ~~gd~gfdp~g~~~~~~~~~~~~~~~~~n~~~~~~g~~~G~~~p~g~~dP~gl~~~~~~~~~~~~r~aELkHGR~AMLA~ 80 (204)
||||||||||||+|++|++|+++|++|+|+|+|.+|++||...+.....|..++|+++.++++||||+|||||||||||+
T Consensus 69 lpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGRwAMLAv 148 (286)
T PLN00187 69 LVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAMLAT 148 (286)
T ss_pred CCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhHHHHHHh
Confidence 79999999999999999999999999999999999999999887788999999999999999999999999999999999
Q ss_pred hhhhHHHhhhcccccCCCccccccCCcccCCCCcchhhHHHHHHHHHHHHHhhhhccccCCCCcCCCCC-CCCCCCCCCC
Q 028743 81 LGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASD 159 (204)
Q Consensus 81 ~G~lv~E~~~g~~w~~ag~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~g~~E~~~~~~~~~~~~~~PGd-~FDPlgl~~d 159 (204)
+||++||+++|..|+++|.+...++.+|++.+.++++++++|+|+++||++|.+|+.+.+..++.|||| .||||||.+|
T Consensus 149 aG~lvpEll~G~~W~~aG~~~~~~g~~y~g~~~p~~~~~l~~iqvllmG~~E~~R~~~~~~~~~~yPGg~~FDPlGl~~d 228 (286)
T PLN00187 149 LGALSVEALTGVTWQDAGKVELVDGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAAD 228 (286)
T ss_pred hchhhHHhccCCcccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccccCCC
Confidence 999999999999999999876666667888777777788999999999999999987665556789999 7999999999
Q ss_pred cchhhhhHHHHHhhhHHHHHHHHHHHHHHhhcCCchh-hhhhhccC
Q 028743 160 PGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI-SFVATFNQ 204 (204)
Q Consensus 160 ~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vtG~gpl-~~~~~~~~ 204 (204)
+++++++|++|||||||||+|++||++|+++||+||+ |+.+|++.
T Consensus 229 ~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hlad 274 (286)
T PLN00187 229 PEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSD 274 (286)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcC
Confidence 9999999999999999999999999999999999999 88899863
No 2
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=2e-50 Score=347.76 Aligned_cols=143 Identities=44% Similarity=0.823 Sum_probs=118.2
Q ss_pred hHHHHHHhHhhccchhhhhhhhhhHHHhhhcccccCCCcccc-ccC-CcccCCCCcc-hhhHHHHHHHHHHHHHhhhhcc
Q 028743 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVEL-VEG-SSYLGQPLPF-SLTTLIWIEVIVIGYIEYQRNA 137 (204)
Q Consensus 61 ~~~~~r~aELkHGR~AMLA~~G~lv~E~~~g~~w~~ag~~~~-~~g-~~~~~~~~~~-~~~~~~~~~v~~~g~~E~~~~~ 137 (204)
+++|||++|||||||||||++||++||+++...|+++++... ..+ .+|++.+.++ .+++++|+|+++||++|.+|..
T Consensus 78 ~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~ 157 (243)
T PLN00099 78 NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSM 157 (243)
T ss_pred HHHHHHHHhccCCcHHHHHHhhHHHHHHhccCCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 479999999999999999999999999987667887764321 122 3455555443 4577889999899999998865
Q ss_pred ccCCCCcCCCCCCCCCCCCCCCcchhhhhHHHHHhhhHHHHHHHHHHHHHH-hhcCCchh-hhhhhcc
Q 028743 138 ELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA-AFTGKGPI-SFVATFN 203 (204)
Q Consensus 138 ~~~~~~~~~PGd~FDPlgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~q~-~vtG~gpl-~~~~~~~ 203 (204)
..++.++.||||.||||||.+|+++++++|+|||||||||||||+||++|+ .+||++|+ ++.+|++
T Consensus 158 ~~~~~~~~yPGd~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hla 225 (243)
T PLN00099 158 EKDPEKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 225 (243)
T ss_pred cCCCCCCcCCCCcCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhc
Confidence 433345679999999999999999999999999999999999999999999 57999999 7778886
No 3
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=8.2e-49 Score=340.54 Aligned_cols=144 Identities=42% Similarity=0.712 Sum_probs=120.5
Q ss_pred hhHHHHHHhHhhccchhhhhhhhhhHHHhhhc--c-----cccCCCcccccc-CCcccCCCCcc---hhhHHHHHHHHHH
Q 028743 60 FGLQRFRECELIHGRWAMLGTLGAIAVEALTG--V-----AWQDAGKVELVE-GSSYLGQPLPF---SLTTLIWIEVIVI 128 (204)
Q Consensus 60 ~~~~~~r~aELkHGR~AMLA~~G~lv~E~~~g--~-----~w~~ag~~~~~~-g~~~~~~~~~~---~~~~~~~~~v~~~ 128 (204)
++++|||++|||||||||||++||+++|++++ + .|+++|...+.+ +.+|++.+... ++.+++|+|+++|
T Consensus 86 ~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lm 165 (262)
T PLN00025 86 ETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLM 165 (262)
T ss_pred HHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCcccccccccccccccccccccCcccchhhhHHHHHHHHHHHH
Confidence 35799999999999999999999999999863 2 488888643333 35677766432 3456778899999
Q ss_pred HHHhhhhcccc---CCCCcCCCCCCCCCCCCCCCcchhhhhHHHHHhhhHHHHHHHHHHHHHHhhcCCchh-hhhhhcc
Q 028743 129 GYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI-SFVATFN 203 (204)
Q Consensus 129 g~~E~~~~~~~---~~~~~~~PGd~FDPlgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vtG~gpl-~~~~~~~ 203 (204)
|++|.+|+... ...++.||||.||||||++|+++++++|+||||||||||+|++||++|+++||+||+ ++.+||+
T Consensus 166 g~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hla 244 (262)
T PLN00025 166 GAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 244 (262)
T ss_pred HHHHHhcccCCcccccccCcCCcccCCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhc
Confidence 99999987642 123557999999999999999999999999999999999999999999999999999 7888986
No 4
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=6.2e-48 Score=331.89 Aligned_cols=150 Identities=40% Similarity=0.673 Sum_probs=125.2
Q ss_pred CCCCCCCCCCCCCCCccccccccchhhhhhhccccccccccccCCCCCCCCCCCCCcchhhHHHHHHhHhhccchhhhhh
Q 028743 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGT 80 (204)
Q Consensus 1 ~~gd~gfdp~g~~~~~~~~~~~~~~~~~n~~~~~~g~~~G~~~p~g~~dP~gl~~~~~~~~~~~~r~aELkHGR~AMLA~ 80 (204)
|||||||||+||+++++ +++|||++|||||||||||+
T Consensus 61 ~pGD~GfDPlGl~~~~~-------------------------------------------~~~~~r~aEl~hGR~AMLa~ 97 (244)
T PLN00097 61 LPCDYGFDPLNLGADPE-------------------------------------------MLKWFVQAELMHARWAMLGL 97 (244)
T ss_pred CCCCCCCCccccCcCHH-------------------------------------------HHHHHHHHHHhcchHHHHHH
Confidence 68999999999886443 47999999999999999999
Q ss_pred hhhhHHHhhhcc------cccCCCccccccCCcccCCCCcchhhHHHHHHHHHHHHHhhhhccccC--------------
Q 028743 81 LGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELD-------------- 140 (204)
Q Consensus 81 ~G~lv~E~~~g~------~w~~ag~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~g~~E~~~~~~~~-------------- 140 (204)
+||+++|++++. .|+++++.. .|.. ...+++++|+++||++|.+|+.++.
T Consensus 98 ~G~lv~e~l~~~g~~~~p~W~~Ag~~~-----~~~~-----~~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~ 167 (244)
T PLN00097 98 AGCVAPELLTKIGMADLPNWIDAAKWD-----GYWA-----GAGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGAN 167 (244)
T ss_pred hhhhHHHHhcCCCcccCCccccCCcch-----hccc-----cchhHHHHHHHHHHHHHHHHhhcccCCCccccccccccc
Confidence 999999998643 588877532 1221 1235778899999999999976421
Q ss_pred ----CCCcCCCCCCCCCCCCCCCcchhhhhHHHHHhhhHHHHHHHHHHHHHHhhcCCchh-hhhhhcc
Q 028743 141 ----PVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI-SFVATFN 203 (204)
Q Consensus 141 ----~~~~~~PGd~FDPlgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vtG~gpl-~~~~~~~ 203 (204)
+.+..|||+.||||||.+|+++++++|+||||||||||+|++||++|+++||+||+ ++.+|++
T Consensus 168 ~~~~~~d~gYPgg~FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~Hla 235 (244)
T PLN00097 168 KGDTNTDVGYPKGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLA 235 (244)
T ss_pred cCCcccccCCCCCCCCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhc
Confidence 12345999999999999999999999999999999999999999999999999999 7889986
No 5
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=3.5e-47 Score=331.07 Aligned_cols=132 Identities=42% Similarity=0.743 Sum_probs=109.4
Q ss_pred hHHHHHHhHhhccchhhhhhhhhhHHHhhhcc------cccCCCccccccCCcccCCCCcchhhHHHHHHHHHHHHHhhh
Q 028743 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQ 134 (204)
Q Consensus 61 ~~~~~r~aELkHGR~AMLA~~G~lv~E~~~g~------~w~~ag~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~g~~E~~ 134 (204)
.++|||++|||||||||||++|+++||++++. .|+++|... |...+ .+++++|+++||++|.+
T Consensus 96 ~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~------~~~~~-----~~l~~~q~~lmG~~E~~ 164 (267)
T PLN00098 96 LLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGARE------YFADP-----TTLFVVQMVLMGWAEGR 164 (267)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchh------hccCc-----hHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999998642 577766432 32222 24678899999999999
Q ss_pred hccccC-----------------CCCcCCCCC-CCCCCCCCC-CcchhhhhHHHHHhhhHHHHHHHHHHHHHHhhcCCch
Q 028743 135 RNAELD-----------------PVKRLYPGG-YFDPLGLAS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGP 195 (204)
Q Consensus 135 ~~~~~~-----------------~~~~~~PGd-~FDPlgl~~-d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vtG~gp 195 (204)
|+.++. ..+..|||| +|||++|.+ |+++++++|+||||||||||+|++||++|+.+||++|
T Consensus 165 R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gP 244 (267)
T PLN00098 165 RWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGP 244 (267)
T ss_pred HhhcccCCccccccccccccccCCCCCCCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCh
Confidence 875421 013469999 699999974 8999999999999999999999999999999999999
Q ss_pred h-hhhhhcc
Q 028743 196 I-SFVATFN 203 (204)
Q Consensus 196 l-~~~~~~~ 203 (204)
+ ++.+||+
T Consensus 245 l~nL~~hla 253 (267)
T PLN00098 245 IENLMAHLA 253 (267)
T ss_pred HHHHHHHhc
Confidence 9 7778886
No 6
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=3.3e-47 Score=330.89 Aligned_cols=160 Identities=38% Similarity=0.663 Sum_probs=128.8
Q ss_pred CCCCCCCCCCCCCCCccccccccchhhhhhhccccccccccccCCCCCCCCCCCCCcchhhHHHHHHhHhhccchhhhhh
Q 028743 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGT 80 (204)
Q Consensus 1 ~~gd~gfdp~g~~~~~~~~~~~~~~~~~n~~~~~~g~~~G~~~p~g~~dP~gl~~~~~~~~~~~~r~aELkHGR~AMLA~ 80 (204)
||||||||||||++|... ....+.+|+|++|||||||||||+
T Consensus 59 lPGD~GFDPlGL~~p~~~--------------------------------------~~~~~~~~~r~aEL~hGR~AMLa~ 100 (262)
T PLN00048 59 LPGDFGFDPLGLSDPEGA--------------------------------------GGFIEPQWLAYGEVINGRFAMLGA 100 (262)
T ss_pred CCCccCCCccccCCcccc--------------------------------------ccchhHHHHHHHHhhcchHHHHHH
Confidence 799999999999875421 001246899999999999999999
Q ss_pred hhhhHHHhhhc---------ccccCCCccccccCCcccCCCCcchhhHHHHHHHHHHHHHhhhhccccC-----------
Q 028743 81 LGAIAVEALTG---------VAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELD----------- 140 (204)
Q Consensus 81 ~G~lv~E~~~g---------~~w~~ag~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~g~~E~~~~~~~~----------- 140 (204)
+||+++|++++ ..|+++|++......+|...+ .+++|+|+++||++|++|++++.
T Consensus 101 ~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p-----~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~ 175 (262)
T PLN00048 101 AGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADP-----YTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFL 175 (262)
T ss_pred hhHHHHHHhccCCccccccccccccccccccccccccccch-----hHHHHHHHHHhhheeeeccccccCCCcccccccc
Confidence 99999999862 248888764322223454332 35678899999999999876421
Q ss_pred -------C-CCcCCCCC-CCCCCCCCCCcchhhhhHHHHHhhhHHHHHHHHHHHHHHhhcCCchh-hhhhhcc
Q 028743 141 -------P-VKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI-SFVATFN 203 (204)
Q Consensus 141 -------~-~~~~~PGd-~FDPlgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vtG~gpl-~~~~~~~ 203 (204)
. .++.|||| +||||||.+|+|+++++|+||||||||||+|++||++|+++||++|+ ++.+||+
T Consensus 176 ~~~~~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hla 248 (262)
T PLN00048 176 GLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLA 248 (262)
T ss_pred cchhccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhc
Confidence 0 14569999 79999999999999999999999999999999999999999999999 7778886
No 7
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=5.2e-47 Score=336.02 Aligned_cols=160 Identities=41% Similarity=0.704 Sum_probs=129.6
Q ss_pred CCCCCCCCCCCCCCCccccccccchhhhhhhccccccccccccCCCCCCCCCCCCCcchhhHHHHHHhHhhccchhhhhh
Q 028743 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGT 80 (204)
Q Consensus 1 ~~gd~gfdp~g~~~~~~~~~~~~~~~~~n~~~~~~g~~~G~~~p~g~~dP~gl~~~~~~~~~~~~r~aELkHGR~AMLA~ 80 (204)
||||||||||||+++++ +++|||++|||||||||||+
T Consensus 127 lpGD~GFDPLGL~~dp~-------------------------------------------~l~~~reaELkHGR~AMLA~ 163 (324)
T PLN00171 127 LPGDYGFDIAGLGKDPV-------------------------------------------AFDKYFNFEILHARWAMLAA 163 (324)
T ss_pred CCcccCCCccccccCHH-------------------------------------------HHHHHHHHHhccchHHHHHH
Confidence 68999999999987433 47999999999999999999
Q ss_pred hhhhHHHhhhc--------ccccCCCccccccC-CcccCCCCc-----chhhHHHHHHHHHHHHHhhhhccccC------
Q 028743 81 LGAIAVEALTG--------VAWQDAGKVELVEG-SSYLGQPLP-----FSLTTLIWIEVIVIGYIEYQRNAELD------ 140 (204)
Q Consensus 81 ~G~lv~E~~~g--------~~w~~ag~~~~~~g-~~~~~~~~~-----~~~~~~~~~~v~~~g~~E~~~~~~~~------ 140 (204)
+|+++||++++ ..|+++|...+... .+|.+.|.. ..+..++|+|+++|+.+|+.|+..++
T Consensus 164 ~G~lv~e~l~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g 243 (324)
T PLN00171 164 LGVVIPEVLDLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLG 243 (324)
T ss_pred hhHHHHHHhccCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCcc
Confidence 99999999752 24888886543222 245555431 23456788999998888998876432
Q ss_pred ---CCCcCCCCC-CCCCCCCCCCcchhhhhHHHHHhhhHHHHHHHHHHHHHHhhcCCchh-hhhhhcc
Q 028743 141 ---PVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI-SFVATFN 203 (204)
Q Consensus 141 ---~~~~~~PGd-~FDPlgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vtG~gpl-~~~~~~~ 203 (204)
+.+..|||| +|||+|+++|+++++++|++|||||||||+|++||++|+.+||++|+ ++.+|++
T Consensus 244 ~~~PGD~gYPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hla 311 (324)
T PLN00171 244 IYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLS 311 (324)
T ss_pred ccCCCcccCCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhc
Confidence 224458888 69999999999999999999999999999999999999999999999 7778886
No 8
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=5.3e-47 Score=327.30 Aligned_cols=128 Identities=43% Similarity=0.777 Sum_probs=106.6
Q ss_pred hHHHHHHhHhhccchhhhhhhhhhHHHhhhcc------cccCCCccccccCCcccCCCCcchhhHHHHHHHHHHHHHhhh
Q 028743 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQ 134 (204)
Q Consensus 61 ~~~~~r~aELkHGR~AMLA~~G~lv~E~~~g~------~w~~ag~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~g~~E~~ 134 (204)
+++|||++|||||||||||++|++++|++++. .|+++|+.. |.. ...+++++|+++||++|++
T Consensus 87 ~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~w~~ag~~~------~~~-----~~~~l~~ie~~~mg~~E~~ 155 (250)
T PLN00101 87 NLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAE------YFA-----SSSTLFVIEFILFHYVEIR 155 (250)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCccccccchh------hcc-----cchHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999998753 487776532 322 1246778899999999999
Q ss_pred hccccC-----------------CCCcCCCCCCCCCCCCCCCcchhhhhHHHHHhhhHHHHHHHHHHHHHHhhcCCchh-
Q 028743 135 RNAELD-----------------PVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI- 196 (204)
Q Consensus 135 ~~~~~~-----------------~~~~~~PGd~FDPlgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vtG~gpl- 196 (204)
|+.++. +.+..||||.||||||+++ +++|+||||||||||+|++||++|+++||+||+
T Consensus 156 R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPGG~FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~ 231 (250)
T PLN00101 156 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFE 231 (250)
T ss_pred HhhcccCCCcccccccccccccCCccccCCCCccCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHH
Confidence 975421 1245699999999999865 388999999999999999999999999999999
Q ss_pred hhhhhcc
Q 028743 197 SFVATFN 203 (204)
Q Consensus 197 ~~~~~~~ 203 (204)
++.+||+
T Consensus 232 nL~~hla 238 (250)
T PLN00101 232 NLLQHLS 238 (250)
T ss_pred HHHHHhc
Confidence 7888986
No 9
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=9.1e-47 Score=326.38 Aligned_cols=133 Identities=37% Similarity=0.665 Sum_probs=109.5
Q ss_pred hHHHHHHhHhhccchhhhhhhhhhHHHhhhcc------cccCCCccccccCCcccCCCCcchhhHHHHHHHHHHHHHhhh
Q 028743 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQ 134 (204)
Q Consensus 61 ~~~~~r~aELkHGR~AMLA~~G~lv~E~~~g~------~w~~ag~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~g~~E~~ 134 (204)
+++|||++|||||||||||++|++++|+++.. .|++++.... .+ .+.++++|+|+++||++|..
T Consensus 79 ~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~~p~w~~ag~~~~----~~------~~~~~~~~~q~~~mG~~E~~ 148 (252)
T PLN00147 79 SLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRNLPVWYEAGAVKF----EF------ASTRTLFVVQLLLMGFAETK 148 (252)
T ss_pred HHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcCCcchhhcccchh----cc------ccchHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999997532 3666553211 01 12356788999999999998
Q ss_pred hccccC-------------------CCCcCCCCC-CCCCCCCCCCcchhhhhHHHHHhhhHHHHHHHHHHHHHHhhcCCc
Q 028743 135 RNAELD-------------------PVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKG 194 (204)
Q Consensus 135 ~~~~~~-------------------~~~~~~PGd-~FDPlgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vtG~g 194 (204)
|+.++. ..+..|||| +||||||.+|+++++++|+||||||||||+|++||++|+++||+|
T Consensus 149 R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~G 228 (252)
T PLN00147 149 RYMDFVSPGSQAKEGSFFGLEAALEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTG 228 (252)
T ss_pred hhccccCCCccccccccccccccccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC
Confidence 864321 113569999 799999999999999999999999999999999999999999999
Q ss_pred hh-hhhhhcc
Q 028743 195 PI-SFVATFN 203 (204)
Q Consensus 195 pl-~~~~~~~ 203 (204)
|+ ++.+|++
T Consensus 229 p~~nL~~hla 238 (252)
T PLN00147 229 PIDNLLTHLS 238 (252)
T ss_pred hHHHHHHHhc
Confidence 99 7889986
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=1.1e-45 Score=317.75 Aligned_cols=144 Identities=38% Similarity=0.574 Sum_probs=118.8
Q ss_pred CCCCCCCCCCCCCCCccccccccchhhhhhhccccccccccccCCCCCCCCCCCCCcchhhHHHHHHhHhhccchhhhhh
Q 028743 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGT 80 (204)
Q Consensus 1 ~~gd~gfdp~g~~~~~~~~~~~~~~~~~n~~~~~~g~~~G~~~p~g~~dP~gl~~~~~~~~~~~~r~aELkHGR~AMLA~ 80 (204)
||||||||||||++++| +++|||++|||||||||||+
T Consensus 52 ~pGd~GFDPlgl~~~~~-------------------------------------------~~~~~r~aEl~hGR~AMla~ 88 (246)
T PLN00100 52 MAGDYGFDPLRLGANPE-------------------------------------------TLPYLQEAELMNGRWAMAAT 88 (246)
T ss_pred CCCCcCCCccccCCCHH-------------------------------------------HHHHHHHHHhhcchHHHHHH
Confidence 68999999999876443 47999999999999999999
Q ss_pred hhhhHHHhhhcccccCCCccccccCCcccCCCCcchhhHHHHHHHHHHHHHhhhhccccCC-CCcCCCCC-CCCCCCCCC
Q 028743 81 LGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDP-VKRLYPGG-YFDPLGLAS 158 (204)
Q Consensus 81 ~G~lv~E~~~g~~w~~ag~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~g~~E~~~~~~~~~-~~~~~PGd-~FDPlgl~~ 158 (204)
+|++++|+++...|+++|... |. ...++++|+|+++||++|.+|+..+.. .+..+||+ .||||||++
T Consensus 89 ~G~~~~E~~~~P~w~~ag~~~------~~-----~~~~~l~~iqill~g~~E~~r~~~~~~~g~~~~pg~~~FDPLGl~~ 157 (246)
T PLN00100 89 AGILFTDAVGLPKFWEAGAEK------YG-----LDLQTLVLIQVVVMAVLEAARYRGFMKTGESGVLSFFPFDPTGMDS 157 (246)
T ss_pred hhhhHHHHhcccchhhcchhh------hc-----cchhHHHHHHHHHHHHHhhhcccccccccccCCCCCCCCCcccccH
Confidence 999999998766688776432 11 123567889999999999998765432 23446888 899999963
Q ss_pred CcchhhhhHHHHHhhhHHHHHHHHHHHHHHhhcCCchh-hhhhhcc
Q 028743 159 DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI-SFVATFN 203 (204)
Q Consensus 159 d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vtG~gpl-~~~~~~~ 203 (204)
+++|+||||||||||+||+||++|+++||++|+ ++.+|++
T Consensus 158 -----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hla 198 (246)
T PLN00100 158 -----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMA 198 (246)
T ss_pred -----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhcc
Confidence 579999999999999999999999999999999 6777875
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=1e-45 Score=319.71 Aligned_cols=131 Identities=47% Similarity=0.780 Sum_probs=110.5
Q ss_pred hHHHHHHhHhhccchhhhhhhhhhHHHhhhcccccCCCccccccCCcccCCCCcchhhHHHHHHHHHHHHHhhhhccccC
Q 028743 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELD 140 (204)
Q Consensus 61 ~~~~~r~aELkHGR~AMLA~~G~lv~E~~~g~~w~~ag~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~g~~E~~~~~~~~ 140 (204)
.++|||++|||||||||||++||+++|++++..|+++|.... + ..++++.+++++|+++||++|.+|+.++.
T Consensus 91 ~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~aG~~~~-----~---~~p~~~~~l~~~q~~lmg~~E~~R~~~~~ 162 (255)
T PLN00170 91 FLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPG-----A---IAPFSFGSLLGTQLLLMGWVESKRWVDFF 162 (255)
T ss_pred HHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChhhCCcccc-----c---cCccchHHHHHHHHHHhhhhhheeecccc
Confidence 479999999999999999999999999999999999886321 1 12344567888999999999999976531
Q ss_pred -C----------------------CCcCCCCC-CCCCCCCCC---------CcchhhhhHHHHHhhhHHHHHHHHHHHHH
Q 028743 141 -P----------------------VKRLYPGG-YFDPLGLAS---------DPGKLENLQLAEIKHARLAMVAFLIFGIQ 187 (204)
Q Consensus 141 -~----------------------~~~~~PGd-~FDPlgl~~---------d~e~~~~~k~kELkNGRLAMlA~~G~~~q 187 (204)
+ .+..|||| .||||||++ |+++++++|+||||||||||+|++||++|
T Consensus 163 ~P~~~~~~~~~p~~~~~~~f~~~~g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Q 242 (255)
T PLN00170 163 NPDSQSVEWATPWSRTAENFANATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFE 242 (255)
T ss_pred CCcccccccccccccccccccccCCCcccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHhee
Confidence 1 13459999 699999985 78899999999999999999999999999
Q ss_pred HhhcCCchhhhhh
Q 028743 188 AAFTGKGPISFVA 200 (204)
Q Consensus 188 ~~vtG~gpl~~~~ 200 (204)
+ .||++||+.|.
T Consensus 243 a-~~g~~p~~~l~ 254 (255)
T PLN00170 243 A-GQGKTPLGALG 254 (255)
T ss_pred e-ccCCCchhhhc
Confidence 9 69999997663
No 12
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=5.9e-40 Score=276.60 Aligned_cols=155 Identities=23% Similarity=0.365 Sum_probs=120.3
Q ss_pred ccccccccCCCCCCCCCCCCCcchhhHHHHHHhHhhccchhhhhhhhhhHHHhhhcccccCCCccccccCCcccCCCCc-
Q 028743 36 GELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLP- 114 (204)
Q Consensus 36 g~~~G~~~p~g~~dP~gl~~~~~~~~~~~~r~aELkHGR~AMLA~~G~lv~E~~~g~~w~~ag~~~~~~g~~~~~~~~~- 114 (204)
.+.+|+++|+|+|||++|+...++++++|||++|||||||||||++||+++|. |..|+ |.++. .+.+|.+.|..
T Consensus 35 ~~~~G~~~p~g~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~--g~~~P--g~~~~-~g~~~~~~p~~~ 109 (202)
T PLN00120 35 ENELGAQAPLGFFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA--GIRLP--GDIDY-SGTSFSDIPNGF 109 (202)
T ss_pred hhccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc--cccCC--Ccccc-ccccccccccch
Confidence 45689999999999999998888999999999999999999999999999997 33443 32221 23334333322
Q ss_pred ---chhhHHHHHHHH-HHHHHhhhhccccCCCCcCCCCC-C--CCCCCCCC-CcchhhhhHHHHHhhhHHHHHHHHHHHH
Q 028743 115 ---FSLTTLIWIEVI-VIGYIEYQRNAELDPVKRLYPGG-Y--FDPLGLAS-DPGKLENLQLAEIKHARLAMVAFLIFGI 186 (204)
Q Consensus 115 ---~~~~~~~~~~v~-~~g~~E~~~~~~~~~~~~~~PGd-~--FDPlgl~~-d~e~~~~~k~kELkNGRLAMlA~~G~~~ 186 (204)
..++..+|+|++ +||++|+.+.+.... ++++||| . ++++||.. |+++++++|+|||||||||||||+||++
T Consensus 110 ~a~~~vp~~g~~qi~~~ig~~E~~~~~~~~~-~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~ 188 (202)
T PLN00120 110 AALDAIPTAGLLQILAFIGFLELAVMKDITG-EGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMV 188 (202)
T ss_pred hhhhhcchhHHHHHHHHHHHHHHHhhccccc-CCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235667889987 799999876543222 3468996 2 23455553 7899999999999999999999999999
Q ss_pred HHhhcCCchh
Q 028743 187 QAAFTGKGPI 196 (204)
Q Consensus 187 q~~vtG~gpl 196 (204)
|+.++|+.|+
T Consensus 189 qe~l~g~~~~ 198 (202)
T PLN00120 189 HEQLGVELPI 198 (202)
T ss_pred HHHccCCCcC
Confidence 9999999886
No 13
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=2.3e-39 Score=261.56 Aligned_cols=124 Identities=39% Similarity=0.556 Sum_probs=92.8
Q ss_pred hHHHHHHhHhhccchhhhhhhhhhHHHhhhcccccCCCccccccCCcccCCCCcchhhHHHHHHHH-HHHHHhhhhcccc
Q 028743 61 GLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVI-VIGYIEYQRNAEL 139 (204)
Q Consensus 61 ~~~~~r~aELkHGR~AMLA~~G~lv~E~~~g~~w~~ag~~~~~~g~~~~~~~~~~~~~~~~~~~v~-~~g~~E~~~~~~~ 139 (204)
+++|+|++||||||+||||++|++++|++++.++... .....++..... +.++..+|++++ +||++|.++....
T Consensus 25 ~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~l~~ig~~e~~~~~~~ 99 (156)
T PF00504_consen 25 DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPS----FLGQPAWAEAGG-IPVPAAGWAQILLFIGALEPWRQQGV 99 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-----SSTSSSSSSTTS-SSSHSHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccc----cccccchhhhhh-hhhhhHHHHHHHHHHhHhhhhhcccc
Confidence 4799999999999999999999999999876443211 001111111000 124456665554 7999999876542
Q ss_pred C------CCCcCCCCC-CCCCCCCCCCcchhhhhHHHHHhhhHHHHHHHHHHHHHHh
Q 028743 140 D------PVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAA 189 (204)
Q Consensus 140 ~------~~~~~~PGd-~FDPlgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~ 189 (204)
. ..+..+||+ .|||+|+.+|+++++++|++||||||||||||+|+++|+.
T Consensus 100 ~~~~~~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 100 PEPGEGGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp TTCCTTSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cCCcccccccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1 234679999 7999999999999999999999999999999999999973
No 14
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=9.1e-39 Score=270.53 Aligned_cols=142 Identities=33% Similarity=0.388 Sum_probs=105.2
Q ss_pred CC--CCCCCCCCCCcchhhHHHHHHhHhhccchhhhhhhhhhHHHhhhcccccCCCccccccCCcccCCCCcc----hhh
Q 028743 45 SG--ELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPF----SLT 118 (204)
Q Consensus 45 ~g--~~dP~gl~~~~~~~~~~~~r~aELkHGR~AMLA~~G~lv~E~~~g~~w~~ag~~~~~~g~~~~~~~~~~----~~~ 118 (204)
+| +|||+|+++.. ++.++|||++||||||+||||++|++++|.++.. |.. .+|.+.+..+ .++
T Consensus 54 ~Gd~~fDPlgl~~~~-~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~p-----G~~-----~~~~~~p~~~~a~~~~~ 122 (209)
T PLN00089 54 TGSKKFDPLGLAEKV-EEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIP-----GEA-----YSFAAIPKTIDAHDALL 122 (209)
T ss_pred CCccCcCCccCCCCC-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-----Ccc-----ccccccccHHHHHHhhc
Confidence 55 58999988743 4569999999999999999999999999986421 111 0111222111 122
Q ss_pred HHH-HHHHH-HHHHHhhhhccc---cCCCCcCCCCC-CCCCCCCC-CCcchhhhhHHHHHhhhHHHHHHHHHHHHHHhhc
Q 028743 119 TLI-WIEVI-VIGYIEYQRNAE---LDPVKRLYPGG-YFDPLGLA-SDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFT 191 (204)
Q Consensus 119 ~~~-~~~v~-~~g~~E~~~~~~---~~~~~~~~PGd-~FDPlgl~-~d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vt 191 (204)
... |+|++ +||++|...... ......++||| +|||++|. +|+++++++|++|||||||||+||+||++|+++|
T Consensus 123 ~~g~~~Qi~~~ig~~E~~~~~~~~~~~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~t 202 (209)
T PLN00089 123 KSGAMIQIFAWIGFVDLAVSAPAAAAAAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAIT 202 (209)
T ss_pred ccccHHHHHHHHHHHHHHHhhccccccccCCCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc
Confidence 223 57877 699999643211 01123468999 89999995 6899999999999999999999999999999999
Q ss_pred CCchhh
Q 028743 192 GKGPIS 197 (204)
Q Consensus 192 G~gpl~ 197 (204)
|++++.
T Consensus 203 g~g~~~ 208 (209)
T PLN00089 203 GHGFPY 208 (209)
T ss_pred CCCCCc
Confidence 998764
No 15
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.60 E-value=5.2e-16 Score=134.68 Aligned_cols=54 Identities=39% Similarity=0.542 Sum_probs=51.3
Q ss_pred CcCCCCC-CCCCCCCCCCcchhhhhHHHHHhhhHHHHHHHHHHHHHHhhcCCchh
Q 028743 143 KRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196 (204)
Q Consensus 143 ~~~~PGd-~FDPlgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vtG~gpl 196 (204)
++.+||| +||||||.+|+++++++|++||+||||||+|++|+++|+++|+.+++
T Consensus 67 dG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 67 NGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 5678999 89999999999999999999999999999999999999999998876
No 16
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.59 E-value=7.9e-16 Score=134.67 Aligned_cols=55 Identities=40% Similarity=0.522 Sum_probs=50.9
Q ss_pred CcCCCCC-CCCCCCCCCCcchhhhhHHHHHhhhHHHHHHHHHHHHHHhhcCCchhh
Q 028743 143 KRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPIS 197 (204)
Q Consensus 143 ~~~~PGd-~FDPlgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vtG~gpl~ 197 (204)
++.+||| +||||||++|+++++++|++||||||+||+|++|+++|+++++.++++
T Consensus 76 dG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~ 131 (267)
T PLN00098 76 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIE 131 (267)
T ss_pred CCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCccc
Confidence 5668999 899999999999999999999999999999999999999999877653
No 17
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.56 E-value=2.2e-15 Score=130.93 Aligned_cols=52 Identities=33% Similarity=0.448 Sum_probs=48.7
Q ss_pred CcCCCCC-CCCCCCCCCCcchhhhhHHHHHhhhHHHHHHHHHHHHHHhhcCCc
Q 028743 143 KRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKG 194 (204)
Q Consensus 143 ~~~~PGd-~FDPlgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vtG~g 194 (204)
++.+||| +||||||.+|+++++++|++||||||+||+|++|+++|++++..+
T Consensus 59 dg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 59 DGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred CCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 5678999 899999999999999999999999999999999999999987655
No 18
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.51 E-value=9e-15 Score=126.54 Aligned_cols=53 Identities=34% Similarity=0.399 Sum_probs=49.3
Q ss_pred CcCCCCC-CCCCCCCCCCcchhhhhHHHHHhhhHHHHHHHHHHHHHHhhcCCch
Q 028743 143 KRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGP 195 (204)
Q Consensus 143 ~~~~PGd-~FDPlgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vtG~gp 195 (204)
++..||| +||||||++|+++++++|++||||||+||+|++|+++|+++++.+.
T Consensus 58 dG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 58 DGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 4568999 8999999999999999999999999999999999999999987654
No 19
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.51 E-value=8.4e-15 Score=130.76 Aligned_cols=52 Identities=37% Similarity=0.383 Sum_probs=48.1
Q ss_pred CcCCCCC-CCCCCCCCCCcchhhhhHHHHHhhhHHHHHHHHHHHHHHhhcCCc
Q 028743 143 KRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKG 194 (204)
Q Consensus 143 ~~~~PGd-~FDPlgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vtG~g 194 (204)
++..||| +||||||++|+++++++|++||||||+||+|++|+++|+++++.+
T Consensus 124 dG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g 176 (324)
T PLN00171 124 TGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFG 176 (324)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCC
Confidence 4567999 999999999999999999999999999999999999999987654
No 20
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.51 E-value=1.2e-14 Score=126.38 Aligned_cols=54 Identities=37% Similarity=0.494 Sum_probs=49.5
Q ss_pred CcCCCCC-CCCCCCCCCCcchhhhhHHHHHhhhHHHHHHHHHHHHHHhhcCCchh
Q 028743 143 KRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196 (204)
Q Consensus 143 ~~~~PGd-~FDPlgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vtG~gpl 196 (204)
++.+||| +|||++|.+|++.++++|++||+|||+||+|++||++|++++|...+
T Consensus 71 ~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~ 125 (255)
T PLN00170 71 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 125 (255)
T ss_pred cccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChh
Confidence 4568999 89999999999999999999999999999999999999999886433
No 21
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.50 E-value=1.2e-14 Score=126.86 Aligned_cols=51 Identities=27% Similarity=0.390 Sum_probs=47.6
Q ss_pred CcCCCCC-CCCCCCCCCCcchhhhhHHHHHhhhHHHHHHHHHHHHHHhhcCC
Q 028743 143 KRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGK 193 (204)
Q Consensus 143 ~~~~PGd-~FDPlgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vtG~ 193 (204)
++..||| +||||||++|+++++++|++||||||+||+|++|+++|+++++.
T Consensus 67 dg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~ 118 (262)
T PLN00025 67 TGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKN 118 (262)
T ss_pred cCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcC
Confidence 4568999 99999999999999999999999999999999999999998764
No 22
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.47 E-value=2.8e-14 Score=123.52 Aligned_cols=49 Identities=35% Similarity=0.390 Sum_probs=46.2
Q ss_pred CcCCCCC-CCCCCCCCCCcchhhhhHHHHHhhhHHHHHHHHHHHHHHhhc
Q 028743 143 KRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFT 191 (204)
Q Consensus 143 ~~~~PGd-~FDPlgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vt 191 (204)
++.+||| +||||||++|+++++++|++||||||+||+|++|+++|++++
T Consensus 49 dg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 49 DGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 5678999 899999999999999999999999999999999999999875
No 23
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.44 E-value=5.3e-14 Score=121.83 Aligned_cols=50 Identities=34% Similarity=0.416 Sum_probs=46.5
Q ss_pred CcCCCCC-CCCCCCCCCCcchhhhhHHHHHhhhHHHHHHHHHHHHHHhhcC
Q 028743 143 KRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 192 (204)
Q Consensus 143 ~~~~PGd-~FDPlgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vtG 192 (204)
++..||| +||||+|++++++++++|++||||||+||+|++|+++|++++.
T Consensus 58 dg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 58 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 5678999 9999999999999999999999999999999999999998653
No 24
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.43 E-value=7.9e-14 Score=123.05 Aligned_cols=51 Identities=33% Similarity=0.390 Sum_probs=46.5
Q ss_pred CcCCCCC-CCCCCCCCCCcch-------------------------------------------hhhhHHHHHhhhHHHH
Q 028743 143 KRLYPGG-YFDPLGLASDPGK-------------------------------------------LENLQLAEIKHARLAM 178 (204)
Q Consensus 143 ~~~~PGd-~FDPlgl~~d~e~-------------------------------------------~~~~k~kELkNGRLAM 178 (204)
++..||| +||||||++|||. ++++|..||+|||+||
T Consensus 66 dGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGRwAM 145 (286)
T PLN00187 66 DGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAM 145 (286)
T ss_pred cCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhHHHH
Confidence 4568999 9999999999885 5999999999999999
Q ss_pred HHHHHHHHHHhhcCC
Q 028743 179 VAFLIFGIQAAFTGK 193 (204)
Q Consensus 179 lA~~G~~~q~~vtG~ 193 (204)
+|++|++++|+++|.
T Consensus 146 LAvaG~lvpEll~G~ 160 (286)
T PLN00187 146 LATLGALSVEALTGV 160 (286)
T ss_pred HHhhchhhHHhccCC
Confidence 999999999998763
No 25
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.41 E-value=1.6e-13 Score=120.03 Aligned_cols=53 Identities=32% Similarity=0.438 Sum_probs=45.7
Q ss_pred CcCCCCC-CCCCCCCCCCcc------hhhhhHHHHHhhhHHHHHHHHHHHHHHhhcCCchh
Q 028743 143 KRLYPGG-YFDPLGLASDPG------KLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196 (204)
Q Consensus 143 ~~~~PGd-~FDPlgl~~d~e------~~~~~k~kELkNGRLAMlA~~G~~~q~~vtG~gpl 196 (204)
++..||| +||||||+ ||+ +.+++|.+||+|||+||+|++||++|+++++.+.+
T Consensus 56 dG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~ 115 (262)
T PLN00048 56 DGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLI 115 (262)
T ss_pred CCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCcc
Confidence 4568999 99999997 343 45678999999999999999999999999987765
No 26
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.40 E-value=2.3e-13 Score=115.66 Aligned_cols=48 Identities=38% Similarity=0.424 Sum_probs=42.6
Q ss_pred CCC-CCCCCCCCC-CcchhhhhHHHHHhhhHHHHHHHHHHHHHHhhcCCc
Q 028743 147 PGG-YFDPLGLAS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKG 194 (204)
Q Consensus 147 PGd-~FDPlgl~~-d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vtG~g 194 (204)
.|| +||||||++ ++++++++|++||||||+||+|++|+++|+.++..|
T Consensus 54 ~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG 103 (209)
T PLN00089 54 TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPG 103 (209)
T ss_pred CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence 577 899999985 567899999999999999999999999999986544
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.38 E-value=5e-13 Score=107.84 Aligned_cols=49 Identities=49% Similarity=0.650 Sum_probs=44.9
Q ss_pred cCCCCC-CCCCCCCCCCcchhhhhHHHHHhhhHHHHHHHHHHHHHHhhcCC
Q 028743 144 RLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGK 193 (204)
Q Consensus 144 ~~~PGd-~FDPlgl~~d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~vtG~ 193 (204)
+..+|+ +|||++|++++ .++++|..||||||+||+|++|++++++.++.
T Consensus 7 G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~ 56 (156)
T PF00504_consen 7 GSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGF 56 (156)
T ss_dssp STSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred CCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence 457888 89999999877 89999999999999999999999999999873
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.17 E-value=8.8e-12 Score=105.53 Aligned_cols=45 Identities=42% Similarity=0.748 Sum_probs=40.9
Q ss_pred CCCCCCCCCCCCC--CCcchhhhhHHHHHhhhHHHHHHHHHHHHHHh
Q 028743 145 LYPGGYFDPLGLA--SDPGKLENLQLAEIKHARLAMVAFLIFGIQAA 189 (204)
Q Consensus 145 ~~PGd~FDPlgl~--~d~e~~~~~k~kELkNGRLAMlA~~G~~~q~~ 189 (204)
..|.+.|||+||. +|+++++++|.+||||||+||+|++||++|+.
T Consensus 41 ~~p~g~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 41 QAPLGFFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred CCCCCCCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence 3577789999997 47899999999999999999999999999996
No 29
>PHA02337 putative high light inducible protein
Probab=98.33 E-value=5.2e-07 Score=55.99 Aligned_cols=28 Identities=36% Similarity=0.210 Sum_probs=26.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhcCCch
Q 028743 168 LAEIKHARLAMVAFLIFGIQAAFTGKGP 195 (204)
Q Consensus 168 ~kELkNGRLAMlA~~G~~~q~~vtG~gp 195 (204)
.+|+-||||||++|...+..+++||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 5799999999999999999999999875
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.06 E-value=2.3e-06 Score=70.74 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=35.1
Q ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHhhc-CCchhhhhh
Q 028743 162 KLENLQLAEIKHARLAMVAFLIFGIQAAFT-GKGPISFVA 200 (204)
Q Consensus 162 ~~~~~k~kELkNGRLAMlA~~G~~~q~~vt-G~gpl~~~~ 200 (204)
..++.|..|+.||||||++|+--++.|++| |+||+.|+.
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~ 170 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFN 170 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhc
Confidence 456678889999999999999999999999 999998774
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.78 E-value=1.8e-05 Score=68.14 Aligned_cols=37 Identities=32% Similarity=0.497 Sum_probs=32.9
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHHhhcCCchhhhhhhc
Q 028743 166 LQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATF 202 (204)
Q Consensus 166 ~k~kELkNGRLAMlA~~G~~~q~~vtG~gpl~~~~~~ 202 (204)
+..+|+-|||+|||||+..++.+++||++.+.|+..|
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f 195 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNF 195 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhh
Confidence 3458999999999999999999999999999887553
No 32
>PHA02337 putative high light inducible protein
Probab=97.58 E-value=3.9e-05 Score=47.65 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=24.5
Q ss_pred HHhHhhccchhhhhhhhhhHHHhhhcc
Q 028743 66 RECELIHGRWAMLGTLGAIAVEALTGV 92 (204)
Q Consensus 66 r~aELkHGR~AMLA~~G~lv~E~~~g~ 92 (204)
..+|+.|||+||++++..+..|+++|.
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq 29 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQ 29 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCC
Confidence 368999999999999999999998874
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=95.98 E-value=0.0031 Score=54.61 Aligned_cols=28 Identities=50% Similarity=0.698 Sum_probs=25.6
Q ss_pred HHhHhhccchhhhhhhhhhHHHhhhccc
Q 028743 66 RECELIHGRWAMLGTLGAIAVEALTGVA 93 (204)
Q Consensus 66 r~aELkHGR~AMLA~~G~lv~E~~~g~~ 93 (204)
.++|+.|||+||++++-.++.|+++|..
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~g 187 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVG 187 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCc
Confidence 5799999999999999999999998854
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=94.12 E-value=0.028 Score=46.87 Aligned_cols=29 Identities=45% Similarity=0.539 Sum_probs=26.1
Q ss_pred HHHHHHhHhhccchhhhhhhhhhHHHhhh
Q 028743 62 LQRFRECELIHGRWAMLGTLGAIAVEALT 90 (204)
Q Consensus 62 ~~~~r~aELkHGR~AMLA~~G~lv~E~~~ 90 (204)
.+..+..|+.+||+|||+++-.++.|++|
T Consensus 132 vrEqK~nE~~NGRLAMLGF~~alitE~lT 160 (214)
T PLN00084 132 VREQKPYELFNGRLAMLGFAFAIAGDAVT 160 (214)
T ss_pred HHhccchhhhhhHHHHHHHHHHHHHHHHh
Confidence 45566789999999999999999999998
No 35
>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]
Probab=76.70 E-value=1.4 Score=40.42 Aligned_cols=37 Identities=30% Similarity=0.511 Sum_probs=29.9
Q ss_pred CcchhhHHHHHHhHhhccc------hhhhhhhhhhHHHhhhccc
Q 028743 56 YTEVFGLQRFRECELIHGR------WAMLGTLGAIAVEALTGVA 93 (204)
Q Consensus 56 ~~~~~~~~~~r~aELkHGR------~AMLA~~G~lv~E~~~g~~ 93 (204)
|+|-..-+|||.-||--|. |-|-| +||++.|+++|.+
T Consensus 158 YTDYVATRWYRaPELLvGDtqYG~pVDiWA-iGCv~aEl~~G~p 200 (396)
T KOG0593|consen 158 YTDYVATRWYRAPELLVGDTQYGKPVDIWA-IGCVFAELLTGEP 200 (396)
T ss_pred hhhhhhhhhccChhhhcccCcCCCcccchh-hhHHHHHHhcCCc
Confidence 6677778999999999995 34443 6999999999975
No 36
>PLN02449 ferrochelatase
Probab=57.24 E-value=7.8 Score=37.24 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhcCCchh
Q 028743 176 LAMVAFLIFGIQAAFTGKGPI 196 (204)
Q Consensus 176 LAMlA~~G~~~q~~vtG~gpl 196 (204)
+||+||+.+++-++++|.||+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNL 483 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcC
Confidence 999999999999999999997
No 37
>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=30.08 E-value=26 Score=31.69 Aligned_cols=33 Identities=30% Similarity=0.425 Sum_probs=25.8
Q ss_pred hHHHHHHhHhhccc------hhhhhhhhhhHHHhhhcccc
Q 028743 61 GLQRFRECELIHGR------WAMLGTLGAIAVEALTGVAW 94 (204)
Q Consensus 61 ~~~~~r~aELkHGR------~AMLA~~G~lv~E~~~g~~w 94 (204)
.-+|||.-||--|- |.|-| +||++.|++.+.++
T Consensus 163 ~TRWYRAPELLfGsr~Yg~~VDmWa-vGCI~AELllr~P~ 201 (318)
T KOG0659|consen 163 VTRWYRAPELLFGSRQYGTGVDMWA-VGCIFAELLLRVPF 201 (318)
T ss_pred eeeeccChHHhccchhcCCcchhhh-HHHHHHHHHccCCC
Confidence 45899999987764 77776 58999999866544
No 38
>PF01524 Gemini_V1: Geminivirus V1 protein; InterPro: IPR002511 Disruption of the V1 gene in Tomato yellow leaf curl virus (TYLCV) stopped its ability to systemically infect Solanum lycopersicum (Tomato) (Lycopersicon esculentum) plants, suggesting that the V1 gene product is required for successful infection of the host [].; GO: 0019048 virus-host interaction, 0060967 negative regulation of gene silencing by RNA, 0030430 host cell cytoplasm
Probab=27.79 E-value=31 Score=25.20 Aligned_cols=13 Identities=38% Similarity=0.509 Sum_probs=10.7
Q ss_pred Hhhccchhhhhhh
Q 028743 69 ELIHGRWAMLGTL 81 (204)
Q Consensus 69 ELkHGR~AMLA~~ 81 (204)
|-.||=-||||+=
T Consensus 11 ~tvHGfRCMLAiK 23 (78)
T PF01524_consen 11 ETVHGFRCMLAIK 23 (78)
T ss_pred ccccchhHHHHHH
Confidence 6789999999763
No 39
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=23.11 E-value=39 Score=32.97 Aligned_cols=64 Identities=30% Similarity=0.393 Sum_probs=47.0
Q ss_pred hhhhccccccccccccCCC---CCCCCCCCCCcchhhHHHHHHhHhhccchhh-----hhhhhhhHHHhhhccc
Q 028743 28 QNLAKNDVGELLGVITDSG---ELQPTPLQPYTEVFGLQRFRECELIHGRWAM-----LGTLGAIAVEALTGVA 93 (204)
Q Consensus 28 ~n~~~~~~g~~~G~~~p~g---~~dP~gl~~~~~~~~~~~~r~aELkHGR~AM-----LA~~G~lv~E~~~g~~ 93 (204)
.|+.+|..|.+ +.+..| ||+|-.-.+|++..---|||.-||-.|--.. |=-+|||+.|++.|-+
T Consensus 247 SNiLidn~G~L--KiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkP 318 (560)
T KOG0600|consen 247 SNILIDNNGVL--KIADFGLARFYTPSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKP 318 (560)
T ss_pred cceEEcCCCCE--EeccccceeeccCCCCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCC
Confidence 46666666643 334445 8999998889888878899999999997332 2237999999987643
No 40
>PHA03159 hypothetical protein; Provisional
Probab=22.99 E-value=69 Score=25.81 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=14.6
Q ss_pred hhhH-HHHHHHHHHHHHHh
Q 028743 172 KHAR-LAMVAFLIFGIQAA 189 (204)
Q Consensus 172 kNGR-LAMlA~~G~~~q~~ 189 (204)
|=|| +||+++..+++|.+
T Consensus 72 NWGrvvAmLsFsa~vlQkI 90 (160)
T PHA03159 72 NWGKVVAMISFSAAALQTI 90 (160)
T ss_pred cHHHHHHHHhhHHHHHHHH
Confidence 3466 89999999999965
Done!