Query 028743
Match_columns 204
No_of_seqs 173 out of 1180
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 18:22:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028743.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2234-2238//hhsearch_pdb/028743hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pl9_A Chlorophyll A-B binding 1.0 1 1 426.0 9.2 204 1-204 28-232 (243)
2 2bhw_A Chlorophyll A-B binding 1.0 1 1 300.0 13.1 162 40-203 38-214 (232)
3 2wsc_1 AT3G54890, LHCA1; photo 1.0 1 1 292.6 8.0 156 47-204 67-227 (241)
4 2wsc_3 LHCA3, type II chloroph 1.0 1 1 287.0 4.9 160 1-203 73-262 (276)
5 2wsc_2 LHCA2, type II chloroph 1.0 1 1 285.3 4.2 144 48-204 87-257 (269)
6 2wsc_4 Chlorophyll A-B binding 1.0 1 1 280.1 1.6 140 47-204 75-238 (251)
7 2wsc_4 Chlorophyll A-B binding 1.0 1 1 115.1 0.9 54 143-196 67-121 (251)
8 2wsc_2 LHCA2, type II chloroph 1.0 1 1 113.7 2.0 54 143-196 78-132 (269)
9 2bhw_A Chlorophyll A-B binding 1.0 1 1 110.8 5.6 48 43-92 156-203 (232)
10 3pl9_A Chlorophyll A-B binding 1.0 1 1 105.9 3.6 50 143-192 25-118 (243)
No 1
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=1.00 E-value=1 Score=426.04 Aligned_cols=204 Identities=75% Similarity=1.260 Sum_probs=190.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99888889899999964312352101132102355652332368887789999988504567888986750352266432
Q 028743 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGT 80 (204)
Q Consensus 1 ~~gd~gfdplg~~~~~~~~q~~~~~~~~n~~~~~~g~~iG~~~p~g~~dP~gl~~~~~~~~~~~~r~aElkhgR~AMla~ 80 (204)
||||||||||||+||+|+||||+|++|+|+|+|.+|++||...+.....|.+|++|++.++++||||+|||||||||||+
T Consensus 28 lpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ReaELkHGRwAMLAv 107 (243)
T 3pl9_A 28 LVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLAT 107 (243)
T ss_dssp ------------------------------------------------------------CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 87767878444679833300221100001101355552343212344455555542101456777886643020099888
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34467876414453478730012477666999751146899999999998765320246998767988888878998894
Q 028743 81 LGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDP 160 (204)
Q Consensus 81 ~G~~~~e~~~g~~w~~~g~~~~~~g~~~~~~p~~~~~~~l~~~qi~l~g~~E~~r~~~~~~~~~~~PGd~FDPlgl~~d~ 160 (204)
+||+++|++++..|+++|.+....+.+|++.+.+.++++++|+|+++||++|.+|+.+.++.+..||||.|||+|+++|+
T Consensus 108 lG~lvpE~l~g~~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG~~E~~R~~~~~~~~~~~PG~~FDPLGl~~d~ 187 (243)
T 3pl9_A 108 LGALTVEGLTGITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDTEKRLYPGGTFDPLGLASDP 187 (243)
T ss_dssp HHHHHHHHHHSCCTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHHHHHHHHHSCCCTTTTTCCCGGGCTTCTTCST
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCH
T ss_conf 88886776248654546543456652102575411367999999999999988753035776666888504232144558
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHCCC
Q ss_conf 303466798975557899998899987740477502-44420049
Q 028743 161 GKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI-SFVATFNQ 204 (204)
Q Consensus 161 e~~~~~k~kEikNGRLAMiAi~G~~~q~~vtG~gPl-~~~~~~~~ 204 (204)
++++++|.+|||||||||+||+|+++|+.+||+||+ ++.+|++.
T Consensus 188 e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~Hlad 232 (243)
T 3pl9_A 188 EKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSD 232 (243)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 999999988885151999999999999894488738999998248
No 2
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=1.00 E-value=1 Score=299.96 Aligned_cols=162 Identities=40% Similarity=0.672 Sum_probs=128.1
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--C-----CCCCCCCCCCCCC-CCCCCCC
Q ss_conf 323688877899999885045678889867503522664323446787641--4-----4534787300124-7766699
Q 028743 40 GVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--G-----VAWQDAGKVELVE-GSSYLGQ 111 (204)
Q Consensus 40 G~~~p~g~~dP~gl~~~~~~~~~~~~r~aElkhgR~AMla~~G~~~~e~~~--g-----~~w~~~g~~~~~~-g~~~~~~ 111 (204)
|..+.-..|||+||+. ++++++||||+|||||||||||++|++++|+++ | ..|+++|...+.+ +.+|.+.
T Consensus 38 G~~pGD~GFDPLGLs~--d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G~~~~~~~w~~ag~~~~~~~~~~~~~~ 115 (232)
T 2bhw_A 38 GEFPGDYGWDTAGLSA--DPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGN 115 (232)
T ss_dssp SCSTTCCSCCTTCTTC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSCCSGGGSGGGGGSTTCEEGGGC
T ss_pred CCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCHHCCCC
T ss_conf 8678888978771787--88999999999985056288766555528876047867765333001211124542000268
Q ss_pred CCCC---HHHHHHHHHHHHHHHHHHHHCCC--C-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9751---14689999999999876532024--6-9987679888888789988943034667989755578999988999
Q 028743 112 PLPF---SLTTLIWIEVIVIGYIEYQRNAE--L-DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFG 185 (204)
Q Consensus 112 p~~~---~~~~l~~~qi~l~g~~E~~r~~~--~-~~~~~~~PGd~FDPlgl~~d~e~~~~~k~kEikNGRLAMiAi~G~~ 185 (204)
|... .+..++++|+++||++|.+|+.. . +..+..||||.|||+|+.+|+++++++|.+|||||||||+||+|++
T Consensus 116 P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~ 195 (232)
T 2bhw_A 116 PSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFF 195 (232)
T ss_dssp TTSEEECCHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 51236789999999999999889997522686565665457886554102024547899998766212446999999999
Q ss_pred HHHHHCCCCHH-HHHHHCC
Q ss_conf 87740477502-4442004
Q 028743 186 IQAAFTGKGPI-SFVATFN 203 (204)
Q Consensus 186 ~q~~vtG~gPl-~~~~~~~ 203 (204)
+|+.+||++|+ ++.+|++
T Consensus 196 ~~~~~tg~g~~~~l~~~~a 214 (232)
T 2bhw_A 196 VQAIVTGKGPLENLADHLA 214 (232)
T ss_dssp HHHHHHCSCSHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHC
T ss_conf 9989358881789988733
No 3
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=1.00 E-value=1 Score=292.59 Aligned_cols=156 Identities=44% Similarity=0.788 Sum_probs=125.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCC-CCCCCCCCCC-HHHHHHHH
Q ss_conf 7789999988504567888986750352266432344678764144534787300-1247-7666999751-14689999
Q 028743 47 ELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVE-LVEG-SSYLGQPLPF-SLTTLIWI 123 (204)
Q Consensus 47 ~~dP~gl~~~~~~~~~~~~r~aElkhgR~AMla~~G~~~~e~~~g~~w~~~g~~~-~~~g-~~~~~~p~~~-~~~~l~~~ 123 (204)
.|||+||+. ++++++|||++|||||||||||++|++++|+++...|++++... ...+ ..|++.+.++ .+++++++
T Consensus 67 gfDPlgl~~--~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~i 144 (241)
T 2wsc_1 67 GFDPLGLGE--VPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAI 144 (241)
T ss_dssp CCSSTTTTT--TTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSCSSCSSCCSSSCSSSSSHHHHHHH
T ss_pred CCCCCCCCC--CHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHCCCCCCCCCCCHHCCCCCCHHHHCCCCHHHHHHHHHHH
T ss_conf 847643688--878999999999860401776540020002206775223431100577404440575227789999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHH-HHHHH
Q ss_conf 99999987653202469987679888888789988943034667989755578999988999877-40477502-44420
Q 028743 124 EVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQA-AFTGKGPI-SFVAT 201 (204)
Q Consensus 124 qi~l~g~~E~~r~~~~~~~~~~~PGd~FDPlgl~~d~e~~~~~k~kEikNGRLAMiAi~G~~~q~-~vtG~gPl-~~~~~ 201 (204)
|+++||++|.+|....++.+..||||.|||+|+.+|+++++++|.+|||||||||+||+|+++|+ .+||+||+ ++.+|
T Consensus 145 q~l~ig~~E~~r~~~~~~~~~~yPgg~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h 224 (241)
T 2wsc_1 145 EFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATH 224 (241)
T ss_dssp HHHHTHHHHHHHTSCCSSCCSSSCSCCSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99999999998873267778889888566333565503788987730236547999999999864433897668999988
Q ss_pred CCC
Q ss_conf 049
Q 028743 202 FNQ 204 (204)
Q Consensus 202 ~~~ 204 (204)
++.
T Consensus 225 ~ad 227 (241)
T 2wsc_1 225 LAD 227 (241)
T ss_dssp CCC
T ss_pred HCC
T ss_conf 457
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=1.00 E-value=1 Score=286.99 Aligned_cols=160 Identities=38% Similarity=0.669 Sum_probs=122.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99888889899999964312352101132102355652332368887789999988504567888986750352266432
Q 028743 1 MVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGT 80 (204)
Q Consensus 1 ~~gd~gfdplg~~~~~~~~q~~~~~~~~n~~~~~~g~~iG~~~p~g~~dP~gl~~~~~~~~~~~~r~aElkhgR~AMla~ 80 (204)
+|||||||||||++| +.+ | +..+.+|+|++|||||||||||+
T Consensus 73 ~pGD~GfDPlGl~d~-~~~----------------~---------------------~~~~~~~~r~aEl~hGR~AMLa~ 114 (276)
T 2wsc_3 73 LPGDYGFDPLGLSDP-EGT----------------G---------------------GFIEPKWLAYGEIINGRYAMLGA 114 (276)
T ss_dssp ------------CCC-CCC----------------C---------------------CSSSTTHHHHHHHHHHTTSCCTT
T ss_pred CCCCCCCCCCCCCCH-HHH----------------C---------------------CHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 777667784455886-761----------------3---------------------20257789998861465212457
Q ss_pred HHHHHHHHHHCC---------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC------------
Q ss_conf 344678764144---------53478730012477666999751146899999999998765320246------------
Q 028743 81 LGAIAVEALTGV---------AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAEL------------ 139 (204)
Q Consensus 81 ~G~~~~e~~~g~---------~w~~~g~~~~~~g~~~~~~p~~~~~~~l~~~qi~l~g~~E~~r~~~~------------ 139 (204)
+|++++|++++. .|++.+.+.......|+..+ .+++|+|+++||++|.+|+.++
T Consensus 115 ~G~l~~E~~~~~g~~~~~~p~~w~~~g~ip~aG~~~~~~~~-----~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~ 189 (276)
T 2wsc_3 115 VGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADS-----YTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFL 189 (276)
T ss_dssp TSTTSCSSCSSCCCCCCSSCCSSSSCCCC-----CCCSCCC-----CSTTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSS
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 77778987506545555575014453036630377774030-----3799999999999987643034467765555321
Q ss_pred -------CCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHCC
Q ss_conf -------9987679888-88878998894303466798975557899998899987740477502-4442004
Q 028743 140 -------DPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI-SFVATFN 203 (204)
Q Consensus 140 -------~~~~~~~PGd-~FDPlgl~~d~e~~~~~k~kEikNGRLAMiAi~G~~~q~~vtG~gPl-~~~~~~~ 203 (204)
+..+..|||| +|||+||.+++++++++|.+|||||||||+||+|+++|+.+||++|+ ++.+|++
T Consensus 190 g~~~~~~~~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~Hla 262 (276)
T 2wsc_3 190 GLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLT 262 (276)
T ss_dssp CSCCCCCCCSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 1111235665456888644443011566177888777653155069999999999988448775789987616
No 5
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=1.00 E-value=1 Score=285.34 Aligned_cols=144 Identities=40% Similarity=0.670 Sum_probs=111.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC------CCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 789999988504567888986750352266432344678764144------53478730012477666999751146899
Q 028743 48 LQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFSLTTLI 121 (204)
Q Consensus 48 ~dP~gl~~~~~~~~~~~~r~aElkhgR~AMla~~G~~~~e~~~g~------~w~~~g~~~~~~g~~~~~~p~~~~~~~l~ 121 (204)
|||+||+. |+++++|||++|||||||||||++|++++|++++. .|+++|.. .|+.. .+.++
T Consensus 87 fDPlGL~~--d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p~w~~aG~~------~~~~~-----~~~l~ 153 (269)
T 2wsc_2 87 FDPLGLGS--DPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQ------EYFTD-----TTTLF 153 (269)
T ss_dssp -------C--CCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCCCCCSTTSS------SSCCC-----TTSHH
T ss_pred CCCCCCCC--CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH------HHHCC-----HHHHH
T ss_conf 78435587--9899999999998600089998877676776216785567520122246------55023-----07889
Q ss_pred HHHHHHHHHHHHHHCCCCC-----------------CCCCCCCCC-CCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999987653202469-----------------987679888-888789988-943034667989755578999988
Q 028743 122 WIEVIVIGYIEYQRNAELD-----------------PVKRLYPGG-YFDPLGLAS-DPGKLENLQLAEIKHARLAMVAFL 182 (204)
Q Consensus 122 ~~qi~l~g~~E~~r~~~~~-----------------~~~~~~PGd-~FDPlgl~~-d~e~~~~~k~kEikNGRLAMiAi~ 182 (204)
|+|+++||++|.+|+..+. ..+..|||| +|||+|+.+ ++++++++|.+|||||||||+||+
T Consensus 154 ~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~ 233 (269)
T 2wsc_2 154 IVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVM 233 (269)
T ss_dssp HHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999999988741246776555544333445666667888766673124764178999988764026318999999
Q ss_pred HHHHHHHHCCCCHH-HHH-HHCCC
Q ss_conf 99987740477502-444-20049
Q 028743 183 IFGIQAAFTGKGPI-SFV-ATFNQ 204 (204)
Q Consensus 183 G~~~q~~vtG~gPl-~~~-~~~~~ 204 (204)
|+++|+.+||+||+ ++. +|++.
T Consensus 234 g~~~~~~~tg~g~l~~l~~~Hlad 257 (269)
T 2wsc_2 234 GAWFQHIYTGTGPIDNLFAAHLAD 257 (269)
T ss_dssp SSCHHHHHTTTCSSCCCSCCCCCC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 999999963887189888998648
No 6
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=1.00 E-value=1 Score=280.07 Aligned_cols=140 Identities=38% Similarity=0.659 Sum_probs=108.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC------CCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 7789999988504567888986750352266432344678764144------5347873001247766699975114689
Q 028743 47 ELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGV------AWQDAGKVELVEGSSYLGQPLPFSLTTL 120 (204)
Q Consensus 47 ~~dP~gl~~~~~~~~~~~~r~aElkhgR~AMla~~G~~~~e~~~g~------~w~~~g~~~~~~g~~~~~~p~~~~~~~l 120 (204)
.|||+||+. ++++++|+|++|||||||||||++|++++|++++. .|+++|.. .|+..+ +.+
T Consensus 75 gfDPlGl~~--d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~~p~w~~aG~~------~~~~~~-----~~l 141 (251)
T 2wsc_4 75 GFDPLGLAE--DPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKE------EYFASS-----STL 141 (251)
T ss_dssp ------CCC--SCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSCCCCCSCCCSS------SCSSCS-----SCT
T ss_pred CCCCCCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH------HHHCCC-----HHH
T ss_conf 777435678--8678778999999646139999988889998607886677421013357------652242-----689
Q ss_pred HHHHHHHHHHHHHHHCCCCC-----------------CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987653202469-----------------9876798888887899889430346679897555789999889
Q 028743 121 IWIEVIVIGYIEYQRNAELD-----------------PVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLI 183 (204)
Q Consensus 121 ~~~qi~l~g~~E~~r~~~~~-----------------~~~~~~PGd~FDPlgl~~d~e~~~~~k~kEikNGRLAMiAi~G 183 (204)
+|+|+++||++|.+|+.++. ..+..||||.||||++.+ ++++|+|||||||| ||||+|
T Consensus 142 ~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yPGg~FDPLgl~~----~~~~k~kELkNGRL-MlAilG 216 (251)
T 2wsc_4 142 FVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAP----TLEAKEKEIANGRL-MLAFLG 216 (251)
T ss_dssp TTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHSSCCTTCCCCCCS----SSSCTTHHHHHHHT-TTTHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH----HHHHHHHHHHCCHH-HHHHHH
T ss_conf 9999999999999886135577765556543334456666667777668432158----99999988731366-999999
Q ss_pred HHHHHHHCCCCHH-HHHHHCCC
Q ss_conf 9987740477502-44420049
Q 028743 184 FGIQAAFTGKGPI-SFVATFNQ 204 (204)
Q Consensus 184 ~~~q~~vtG~gPl-~~~~~~~~ 204 (204)
|++|+.+||++|+ ++.+|++.
T Consensus 217 f~vQe~vTG~gPl~nL~~hlad 238 (251)
T 2wsc_4 217 FIIQHNVTGKGPFDNLLQHISD 238 (251)
T ss_dssp HHHHHTTSCCCCCCCTTTTTTC
T ss_pred HHHHHHHCCCCHHHHHHHHCCC
T ss_conf 9999885496677889877168
No 7
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=1.00 E-value=1 Score=115.11 Aligned_cols=54 Identities=39% Similarity=0.542 Sum_probs=50.0
Q ss_pred CCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 7679888-88878998894303466798975557899998899987740477502
Q 028743 143 KRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196 (204)
Q Consensus 143 ~~~~PGd-~FDPlgl~~d~e~~~~~k~kEikNGRLAMiAi~G~~~q~~vtG~gPl 196 (204)
++.+||| +|||+||++|+|+++++|.+||||||+||+|++|+++||++++.|++
T Consensus 67 ~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 67 TGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp --------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 7776887777743567886787789999996461399999888899986078866
No 8
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=1.00 E-value=1 Score=113.73 Aligned_cols=54 Identities=39% Similarity=0.465 Sum_probs=48.3
Q ss_pred CCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 7679888-88878998894303466798975557899998899987740477502
Q 028743 143 KRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 196 (204)
Q Consensus 143 ~~~~PGd-~FDPlgl~~d~e~~~~~k~kEikNGRLAMiAi~G~~~q~~vtG~gPl 196 (204)
++.+||| +|||+||++|+|+++++|++||||||+||+|++|+++|+++++.|.+
T Consensus 78 ~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 78 DGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp ----------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 6867887777843558798999999999986000899988776767762167855
No 9
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=1.00 E-value=1 Score=110.78 Aligned_cols=48 Identities=25% Similarity=0.384 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 68887789999988504567888986750352266432344678764144
Q 028743 43 TDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGV 92 (204)
Q Consensus 43 ~p~g~~dP~gl~~~~~~~~~~~~r~aElkhgR~AMla~~G~~~~e~~~g~ 92 (204)
.|.++|||+++.. +++.++++|.+||||||+||+|++|+++++.++|.
T Consensus 156 ~Pg~~fdPlgl~~--~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~ 203 (232)
T 2bhw_A 156 YPGGSFDPLGLAD--DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 203 (232)
T ss_dssp CCCTTSCTTCTTC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCHHCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 7886554102024--54789999876621244699999999999893588
No 10
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=1.00 E-value=1 Score=105.92 Aligned_cols=50 Identities=32% Similarity=0.411 Sum_probs=43.1
Q ss_pred CCCCCCC-CCCCCCCCCCCC-------------------------------------------HHHHHHHHHHHHHHHHH
Q ss_conf 7679888-888789988943-------------------------------------------03466798975557899
Q 028743 143 KRLYPGG-YFDPLGLASDPG-------------------------------------------KLENLQLAEIKHARLAM 178 (204)
Q Consensus 143 ~~~~PGd-~FDPlgl~~d~e-------------------------------------------~~~~~k~kEikNGRLAM 178 (204)
++.+||| +||||||+++|| .++++|.+||||||+||
T Consensus 25 dGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ReaELkHGRwAM 104 (243)
T 3pl9_A 25 DGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAM 104 (243)
T ss_dssp ---------------------------------------------------------------CCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHH
T ss_conf 68787767878444679833300221100001101355552343212344455555542101456777886643020099
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99889998774047
Q 028743 179 VAFLIFGIQAAFTG 192 (204)
Q Consensus 179 iAi~G~~~q~~vtG 192 (204)
+|++|++++|+++|
T Consensus 105 LAvlG~lvpE~l~g 118 (243)
T 3pl9_A 105 LATLGALTVEGLTG 118 (243)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCC
T ss_conf 88888886776248
Done!