BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028747
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CI96|CLIP4_MOUSE CAP-Gly domain-containing linker protein 4 OS=Mus musculus GN=Clip4
PE=1 SV=1
Length = 704
Score = 34.3 bits (77), Expect = 0.61, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 33/133 (24%)
Query: 40 NGSVRNGNLQYAMCT-----FKPPSKNQELFDEL----------------GFKDKFSVNS 78
+GSV G +QY C+ F PPS+ Q L D L GF+ FS S
Sbjct: 526 DGSV--GGVQYFSCSPRYGIFAPPSRVQRLSDSLDTLSEISSNKQNHSYPGFRRSFSTTS 583
Query: 79 A---EENSREIAEVKEE---KREEEKDGSDGSSE-KVKLRRGRQVMRRSNLLAKQVISIQ 131
A +E +R A K + +R + G E VKL G QV+ S + ++ +++
Sbjct: 584 ASSQKEINRRNAFAKTKTTLRRSWSSSTTAGGLEGTVKLHEGSQVLLTS---SNEMATVR 640
Query: 132 SAMSLGFVSQLWV 144
F S +W+
Sbjct: 641 YVGPTDFASGIWL 653
>sp|Q7MUH6|UPPP_PORGI Undecaprenyl-diphosphatase OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=uppP PE=3 SV=1
Length = 280
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 112 RGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVD---TTSWVVLVV 154
+G++ M R +L K +I++ A+ LGF+ + WVD + WVV VV
Sbjct: 79 KGKEFMSRFDLYWKLLIALVPAVILGFLFEDWVDRMLGSVWVVAVV 124
>sp|B2RI95|UPPP_PORG3 Undecaprenyl-diphosphatase OS=Porphyromonas gingivalis (strain ATCC
33277 / DSM 20709 / JCM 12257) GN=uppP PE=3 SV=1
Length = 280
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 112 RGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVD---TTSWVVLVV 154
+G++ M R +L K +I++ A+ LGF+ + WVD + WVV VV
Sbjct: 79 KGKEFMSRFDLYWKLLIALVPAVILGFLFEDWVDRMLGSVWVVAVV 124
>sp|A1WXV1|IF2_HALHL Translation initiation factor IF-2 OS=Halorhodospira halophila
(strain DSM 244 / SL1) GN=infB PE=3 SV=1
Length = 890
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 68 LGFKDKFSVNSAEENSREIAEVKE--EKREEEKDGSDGSSEKVKLRR 112
LG +D + SAE+ + +A +++ ++EEE GSDGS +K+ L+R
Sbjct: 29 LGRRDDGAALSAEDKATLLAHLRQGSPEQEEEGGGSDGSPKKITLKR 75
>sp|A3PA95|SYA_PROM0 Alanine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9301)
GN=alaS PE=3 SV=1
Length = 886
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 63 ELFDELGFKDKFSVNSAEENSREIAEVK--EEKREEEKDGSDGSSEKVKLRRGRQVMRRS 120
EL+D GF + +V AEENS + +VK EE+ +K+ + +S + L + R
Sbjct: 392 ELYDTYGFPLELTVEIAEENSISV-DVKGFEEEMNAQKERAKAASSNIDLTLEGSLEREI 450
Query: 121 NLLAKQVIS-IQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDV 179
+L K V + S +S + +++D+T V E + L+ + E QVGD+
Sbjct: 451 DLFNKTVFNGYNSLLSEAEIKGIFLDST-LVKQASEGQKVLIVLDQTTFYGESGGQVGDI 509
Query: 180 VLIEDESV 187
I + V
Sbjct: 510 GTIFSKDV 517
>sp|Q9PTQ7|DMRT1_CHICK Doublesex- and mab-3-related transcription factor 1 OS=Gallus
gallus GN=DMRT1 PE=2 SV=2
Length = 365
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 22 SVPVTKIRTLSGSKWRPKNGSVRNG-NLQYAMCTFKPPS 59
S+P T + + SG +W+ K R+ + QY MC++ PP+
Sbjct: 251 SLPATYMSSQSGKQWQMKGMENRHAMSSQYRMCSYYPPT 289
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,301,435
Number of Sequences: 539616
Number of extensions: 2817762
Number of successful extensions: 13723
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 13472
Number of HSP's gapped (non-prelim): 220
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)