Query 028747
Match_columns 204
No_of_seqs 103 out of 187
Neff 3.3
Searched_HMMs 29240
Date Tue Mar 26 18:18:11 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028747.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2239-2242//hhsearch_pdb/028747hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pm3_A MTH1895; unknown functi 1.0 1 1 114.7 7.8 78 106-184 10-95 (97)
2 3htr_A Uncharacterized PRC-bar 1.0 1 1 76.8 6.0 76 108-185 6-87 (120)
3 1eys_H Photosynthetic reaction 1.0 1 1 40.2 6.7 61 120-182 149-211 (259)
4 2wjn_H Reaction center protein 1.0 1 1 38.0 5.8 61 119-182 149-210 (258)
5 1rzh_H Reaction center protein 1.0 1 1 37.9 6.9 61 119-182 145-205 (260)
6 2qgg_A 16S rRNA-processing pro 1.0 1 1 16.3 7.4 68 117-186 104-180 (182)
7 3h9n_A Ribosome maturation fac 1.0 1 1 15.9 8.9 72 117-190 95-173 (177)
8 2dyi_A Probable 16S rRNA-proce 1.0 1 1 15.2 5.2 52 117-171 89-141 (162)
9 2f1l_A 16S rRNA processing pro 1.0 1 1 13.9 5.1 67 117-185 113-184 (187)
10 1hy9_A Cocaine and amphetamine 1.0 1 1 13.4 1.5 17 5-21 19-35 (41)
No 1
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Probab=1.00 E-value=1 Score=114.67 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=68.1
Q ss_pred CCCCCCCCCCEEEE-CCCCCCEEEECCCCCEEEEEEEEEEECCCCEEEEEEECCC-C---CCC-C-CEEEECCCCCEEC-
Q ss_conf 41023355312670-3366740575348612344302899778877999998899-8---899-9-8288153421112-
Q 028747 106 EKVKLRRGRQVMRR-SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPN-L---LSG-E-PERLLLEDICQVG- 177 (204)
Q Consensus 106 e~~~~~~~~qmmrr-SeL~~KEVIni~dG~RLG~I~DL~VD~esG~V~AIiVp~~-l---f~g-e-~~~IPWe~IkKIG- 177 (204)
.+.|+.+...+|+. |+|.+|+||| .+|++||.|.|+++|+++|+|.+++++.+ | |+. + ...|||++|++||
T Consensus 10 ~~~~~~~~~~~Mr~~seL~Gk~Vin-~dG~~LG~V~Dv~iD~~~G~I~~lvl~~~~~~~~~g~~~~~~~IPw~~V~~IG~ 88 (97)
T 1pm3_A 10 HSSGLVPRGSHMRIVEEMVGKEVLD-SSAKVIGKVKDVEVDIESQAIESLVLGKGGISEGLGLSKGETIVPYEMVKKIGD 88 (97)
T ss_dssp ----------CEETTTTSSSCEEEC-TTSCEEEEEEEEEEETTTTEEEEEEEECCC---------CEEEEEGGGEEEESS
T ss_pred CCCCCCCCCEEEEEEHHCCCCEEEC-CCCCEEEEEEEEEEECCCCEEEEEEECCCCEECCCCCCCEEEEEEHHHHEEECC
T ss_conf 3478798870897116078977699-999998589899998999989999985897412126798169988268109898
Q ss_pred CEEEEEC
Q ss_conf 3899914
Q 028747 178 DVVLIED 184 (204)
Q Consensus 178 DVILVe~ 184 (204)
|+||++.
T Consensus 89 dvIi~~~ 95 (97)
T 1pm3_A 89 KILLKGP 95 (97)
T ss_dssp SEEECCT
T ss_pred EEEEEEC
T ss_conf 8999746
No 2
>3htr_A Uncharacterized PRC-barrel domain protein; beta-barrel, photo-reaction-center domain, structural genomics, PSI-2; HET: MSE; 2.06A {Rhodopseudomonas palustris}
Probab=1.00 E-value=1 Score=76.83 Aligned_cols=76 Identities=9% Similarity=0.084 Sum_probs=61.9
Q ss_pred CCCCCCCCEEEECCCCCCEEEECCCCCEEEEEEEEEEECCCCEEEEEEECCC-CCC-CCCE-EEECCCCCEEC---CEEE
Q ss_conf 0233553126703366740575348612344302899778877999998899-889-9982-88153421112---3899
Q 028747 108 VKLRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPN-LLS-GEPE-RLLLEDICQVG---DVVL 181 (204)
Q Consensus 108 ~~~~~~~qmmrrSeL~~KEVIni~dG~RLG~I~DL~VD~esG~V~AIiVp~~-lf~-ge~~-~IPWe~IkKIG---DVIL 181 (204)
+..++...+|+.|+|.+++|+|. +|+++|.|.|+++|..+|+|.+++|..+ ||+ ++.. .|||.+|+ +. +.+.
T Consensus 6 ~~~~~~~~l~~~~~l~G~~V~~~-dG~~iG~V~dv~iD~~~G~i~~~vv~~GgflG~g~~~v~ip~~~l~-~~~~~~~~~ 83 (120)
T 3htr_A 6 PETNETLKLIGSDKVQGTAVYGP-DGEKIGSIERVMIEKVSGRVSYAVLSFGGFLGIGDDHYPLPWPALK-YNVELGGYQ 83 (120)
T ss_dssp CCCCBCSSEEEHHHHTTCEEECT-TSCEEEEEEEEEEETTTCBEEEEEEEESSBTTBSCEEEEECGGGCE-EETTTTEEE
T ss_pred CCCCCCCCEEEHHHCCCCEEECC-CCCEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEEECHHHEE-EECCCCEEE
T ss_conf 46667866086211259989939-9998889989999789892989999789856769979985879938-846799999
Q ss_pred EECC
Q ss_conf 9149
Q 028747 182 IEDE 185 (204)
Q Consensus 182 Ve~~ 185 (204)
|++.
T Consensus 84 v~~t 87 (120)
T 3htr_A 84 VMVT 87 (120)
T ss_dssp CCCC
T ss_pred ECCC
T ss_conf 6898
No 3
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=1.00 E-value=1 Score=40.17 Aligned_cols=61 Identities=18% Similarity=0.224 Sum_probs=46.3
Q ss_pred CCCCCCEEEECCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEC--CCCCEECCEEEE
Q ss_conf 336674057534861234430289977887799999889988999828815--342111238999
Q 028747 120 SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLL--EDICQVGDVVLI 182 (204)
Q Consensus 120 SeL~~KEVIni~dG~RLG~I~DL~VD~esG~V~AIiVp~~lf~ge~~~IPW--e~IkKIGDVILV 182 (204)
+++.+..|.+. ||.++|.|.|+++|..+|+|.-++|.-+ ++++...+|+ .+|..=.+-+-|
T Consensus 149 ~dl~G~~Vya~-DGekIG~V~Dv~vD~~sG~VrYlVVdtG-~ggkkVLiPi~~~~Id~d~~~V~V 211 (259)
T 1eys_H 149 PDPRGMTVVGL-DGEVAGTVSDVWVDRSEPQIRYLEVEVA-ANKKKVLLPIGFSRFDKKARKVKV 211 (259)
T ss_dssp CCCTTCEEECS-SSCEEEEEEEEEEETTTTEEEEEEEEET-TTCCEEEEEGGGCEEEGGGTEEEC
T ss_pred CCCCCCEEEEC-CCCEEEEEEEEEEECCCCEEEEEEEECC-CCCCCEEEECCHHHCCCCCCEEEE
T ss_conf 98858988808-9993578889999899880879999827-899747984585211045787998
No 4
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*
Probab=1.00 E-value=1 Score=37.96 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=46.8
Q ss_pred ECCCCCCEEEECCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEC-CEEEE
Q ss_conf 03366740575348612344302899778877999998899889998288153421112-38999
Q 028747 119 RSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVG-DVVLI 182 (204)
Q Consensus 119 rSeL~~KEVIni~dG~RLG~I~DL~VD~esG~V~AIiVp~~lf~ge~~~IPWe~IkKIG-DVILV 182 (204)
-.|+.+..|... ||+++|.|.|+|||..+|+|.-+++.-+. ++++..|||.-.+ |- +-+-|
T Consensus 149 ~~D~~G~~Vyg~-DGe~iGsV~Dl~VD~~eg~VRYLVVdtGg-ggrkVLLP~~~~r-iD~~~VyV 210 (258)
T 2wjn_H 149 DVDPRGLPVVAA-DGVEAGTVTDLWVDRSEHYFRYLELSVAG-SARTALIPLGFCD-VKKDKIVV 210 (258)
T ss_dssp SCCCTTCEEECT-TSCEEEEEEEEEEETTTTEEEEEEEEETT-TTEEEEEEGGGCE-ECSSCEEC
T ss_pred CCCCCCCEEECC-CCCEEEEEEEEEEECCCCEEEEEEEECCC-CCCEEEEEEEEEE-ECCCEEEE
T ss_conf 999888886868-99766799899998898879999999189-8977983347778-84772899
No 5
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=1.00 E-value=1 Score=37.88 Aligned_cols=61 Identities=20% Similarity=0.240 Sum_probs=47.6
Q ss_pred ECCCCCCEEEECCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEECCEEEE
Q ss_conf 0336674057534861234430289977887799999889988999828815342111238999
Q 028747 119 RSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLI 182 (204)
Q Consensus 119 rSeL~~KEVIni~dG~RLG~I~DL~VD~esG~V~AIiVp~~lf~ge~~~IPWe~IkKIGDVILV 182 (204)
-.++.+..|... ||+++|.|.|+|||..+|+|.-+++.-+ ++++..|||.-.+-=.+-+-|
T Consensus 145 ~~d~~G~~Vyg~-DGe~iGsV~Dl~VD~~eg~VRYLVVdtG--ggrkVLLP~~~~riD~~~VyV 205 (260)
T 1rzh_H 145 GKNPIGLPVRGC-DLEIAGKVVDIWVDIPEQMARFLEVELK--DGSTRLLPMQMVKVQSNRVHV 205 (260)
T ss_dssp SCCCTTCEEEET-TSCEEEEEEEEEEETTTTEEEEEEEECT--TSCEEEEEGGGCEECSSCEEE
T ss_pred CCCCCCCEEECC-CCCEEEEEEEEEEECCCCEEEEEEEEEC--CCCEEEEEEEEEEECCCEEEE
T ss_conf 998788876868-9976679989999889887999999918--998898334777883773899
No 6
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=1.00 E-value=1 Score=16.28 Aligned_cols=68 Identities=21% Similarity=0.310 Sum_probs=44.0
Q ss_pred EEECCCCCCEEEECC---CCCEEEEEEEEEEECCCCEEEEEEECCCCCCC-CCEEEECC-C-CCEEC---CEEEEECCC
Q ss_conf 670336674057534---86123443028997788779999988998899-98288153-4-21112---389991497
Q 028747 117 MRRSNLLAKQVISIQ---SAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSG-EPERLLLE-D-ICQVG---DVVLIEDES 186 (204)
Q Consensus 117 mrrSeL~~KEVIni~---dG~RLG~I~DL~VD~esG~V~AIiVp~~lf~g-e~~~IPWe-~-IkKIG---DVILVe~~~ 186 (204)
+-..||.+-+|++.. +|..||.|.++. +.-.+.+..+-....- .+ ++..||++ + |..|- -.|.|+..+
T Consensus 104 ~Y~~dLiGl~V~~~~~~~~g~~lG~V~~v~-~~gandvl~V~~~~~~-~g~ke~LIPf~~~~V~~VDl~~~~I~v~~p~ 180 (182)
T 2qgg_A 104 YYWSDLKGLTVLGLDDEEQEVNLGQIHELF-ETGANDVMVVRATPDS-IDSEERMIPWHKDVVQRVDLEAGRIYVNWGV 180 (182)
T ss_dssp CCHHHHTTCEEEEECTTSCEEEEEEEEEEE-ECSSCEEEEEECCSSS-SSSCCEEEECCTTTEEEEETTTTEEEESCCC
T ss_pred EEHHHHCCCEEEECCCCCCCCEEEEEEEEC-CCCCCEEEEEEECCCC-CCCEEEEEECCHHHEEEEECCCCEEEEECCC
T ss_conf 968983784999735577990779998982-1799279999852478-9972999666950170898789999994899
No 7
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=1.00 E-value=1 Score=15.94 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=47.8
Q ss_pred EEECCCCCCEEEECCCCCEEEEEEEEEEECCCCEEEEEEECCC-CCCCCCEEEECC--C-CCEEC---CEEEEECCCCCC
Q ss_conf 6703366740575348612344302899778877999998899-889998288153--4-21112---389991497312
Q 028747 117 MRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPN-LLSGEPERLLLE--D-ICQVG---DVVLIEDESVME 189 (204)
Q Consensus 117 mrrSeL~~KEVIni~dG~RLG~I~DL~VD~esG~V~AIiVp~~-lf~ge~~~IPWe--~-IkKIG---DVILVe~~~~~e 189 (204)
+-..||.+-+|++. +|..||.|.++ ++.-.+.+..+-.+.. ...+++..||+- + |.+|- -.|.|+..+-+-
T Consensus 95 ~Y~~dLiGl~V~~~-~g~~lG~V~~v-~~~gandvl~V~~~~~~~~~~~e~LIP~v~~~~V~~VDl~~~~I~v~~p~gll 172 (177)
T 3h9n_A 95 YYWHDLIGCTVVNL-EGYTMGTVTEM-METGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRVDLTTKTIEVDWDAGFL 172 (177)
T ss_dssp GGGGGTTTCEEEET-TCCEEEEEEEE-EESSSCEEEEEECCTTCTTCCSEEEEECCBTTTEEEEEGGGTEEEECCCSSTT
T ss_pred CCHHHHCCCEEEEC-CCCEEEEEEEE-EECCCCEEEEEEECCCCCCCCCEEEEECCCHHEEEEEECCCCEEEEECCCCHH
T ss_conf 99999039799948-99897999999-52799679999946655789949993036432688885789999997981064
Q ss_pred C
Q ss_conf 2
Q 028747 190 N 190 (204)
Q Consensus 190 ~ 190 (204)
+
T Consensus 173 e 173 (177)
T 3h9n_A 173 E 173 (177)
T ss_dssp C
T ss_pred H
T ss_conf 4
No 8
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=1.00 E-value=1 Score=15.19 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=35.3
Q ss_pred EEECCCCCCEEEECCCCCEEEEEEEEEEECCCCEEEEEEECCCC-CCCCCEEEECC
Q ss_conf 67033667405753486123443028997788779999988998-89998288153
Q 028747 117 MRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNL-LSGEPERLLLE 171 (204)
Q Consensus 117 mrrSeL~~KEVIni~dG~RLG~I~DL~VD~esG~V~AIiVp~~l-f~ge~~~IPWe 171 (204)
+-..||.+-+|+ .+|..||.|.++. +.-.+.+..+--+++- ...++..||+-
T Consensus 89 ~y~~dLiGl~V~--~~g~~lG~V~~v~-~~ga~dvl~V~~~~g~~~~~~e~LIPfv 141 (162)
T 2dyi_A 89 YYYFALIGLPVY--VEGRQVGEVVDIL-DAGAQDVLIIRGVGERLRDRAERLVPLQ 141 (162)
T ss_dssp CCHHHHTTCEEE--ETTEEEEEEEEEE-EETTEEEEEEEECCSSGGGSTTEEEETT
T ss_pred EEHHHHCCEEEE--ECCEEEEEEEEEC-CCCCCEEEEEEECCCCCCCCCEEEEECC
T ss_conf 968995880999--9996779999984-2799369999958997676768998461
No 9
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=1.00 E-value=1 Score=13.91 Aligned_cols=67 Identities=18% Similarity=0.192 Sum_probs=40.1
Q ss_pred EEECCCCCCEEEECCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEECC-C-CCEEC---CEEEEECC
Q ss_conf 6703366740575348612344302899778877999998899889998288153-4-21112---38999149
Q 028747 117 MRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLE-D-ICQVG---DVVLIEDE 185 (204)
Q Consensus 117 mrrSeL~~KEVIni~dG~RLG~I~DL~VD~esG~V~AIiVp~~lf~ge~~~IPWe-~-IkKIG---DVILVe~~ 185 (204)
+-..||.+-+|++. +|..||.|.++. +.-.+.+..+-.+++--..++..||+- + |..|- -.|.|+..
T Consensus 113 fY~~DLIGl~V~~~-~g~~lG~V~~v~-~~ganDvlvV~~~~g~~~~ke~LIPfv~~~V~~VDle~~~I~V~~p 184 (187)
T 2f1l_A 113 YYWHQLEGLKVIDQ-GRQLLGVIDHLL-ETGANDVMVVKPCAGSLDDRERLLPYTGQCVLSIDLAAGEMRVDWD 184 (187)
T ss_dssp CCHHHHTTCEEEET-TSCEEEEEEEEE-CCSSSCEEEEECCTTSSSSCCEEEECSTTTEEEEETTTTEEEECCC
T ss_pred EEHHHCCCEEEEEC-CCCEEEEEEEEC-CCCCCEEEEEEECCCCCCCCEEEEECHHHHCCEEECCCCEEEEECC
T ss_conf 90898478099938-997889998992-1799379999959998777689985508833878478999999489
No 10
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=1.00 E-value=1 Score=13.43 Aligned_cols=17 Identities=12% Similarity=0.507 Sum_probs=11.1
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 55532013534776678
Q 028747 5 VRVSRMSECISSIPLSN 21 (204)
Q Consensus 5 ~~~~~mc~c~~s~~~~~ 21 (204)
-|+.+||||..-+.-.+
T Consensus 19 ~RigklC~C~rg~~Cn~ 35 (41)
T 1hy9_A 19 ARIGKLCDCPRGTSCNS 35 (41)
T ss_dssp SSEEECCBCCTTCCBCT
T ss_pred CCCCHHCCCCCCCCCHH
T ss_conf 62000138999772110
Done!