BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028748
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6BX14|DPB3_DEBHA DNA polymerase epsilon subunit C OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB3 PE=3 SV=1
Length = 277
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 107 CNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKH 166
+ P+ +IK+IFK + + AV+ AT+ F++ F E + D++K L YK
Sbjct: 90 LSLPLSKIKKIFKMDPDYLAASQSAVYATGLATELFIQYFTEQSLVLAKMDKRKKLQYKD 149
Query: 167 LA-VVSEQSKYDFLSDYVP 184
+ V+ Q +FLSD VP
Sbjct: 150 FSNAVASQDSLNFLSDTVP 168
>sp|Q9NRG0|CHRC1_HUMAN Chromatin accessibility complex protein 1 OS=Homo sapiens GN=CHRAC1
PE=1 SV=1
Length = 131
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAY 164
++ + P+ RI+ I K+ I EA+ L KAT+ F++ +Y + KK L Y
Sbjct: 15 RLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTY 74
Query: 165 KHLAVVSEQSK-YDFLSDYVPEKIKAEDAL 193
LA ++QS+ + FL+D +P+KI A L
Sbjct: 75 SDLANTAQQSETFQFLADILPKKILASKYL 104
>sp|P79007|HAP5_SCHPO Transcriptional activator hap5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap5 PE=2 SV=1
Length = 415
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 98 DDDDEVSKVCNFPMGRIKRIFKTQSSDI---GITGEAVFLVNKATDKFLEQFCEDAYECC 154
+ DD+ K + P+ RIK++ KT D+ I+ EA FL K ++ F+ + A+
Sbjct: 98 EHDDQAVKTLHLPLARIKKVMKT-DDDVKNKMISAEAPFLFAKGSEIFIAELTMRAWLHA 156
Query: 155 AKDRKKSLAYKHLA-VVSEQSKYDFLSDYV 183
K+++++L +A VS+ YDFL D +
Sbjct: 157 KKNQRRTLQRSDIANAVSKSEMYDFLIDII 186
>sp|Q9JKP8|CHRC1_MOUSE Chromatin accessibility complex protein 1 OS=Mus musculus GN=Chrac1
PE=1 SV=1
Length = 129
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAY 164
++ + P+ RI+ I K+ I EA+ L KAT+ F++ +Y + KK+L Y
Sbjct: 15 RLVSLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQYLATCSYRHGSGKAKKALTY 74
Query: 165 KHLAVVSEQSK-YDFLSDYVPEKIKAEDAL 193
LA +E S+ FL+D +P+KI A L
Sbjct: 75 SDLASTAEDSETLQFLADILPKKILASKYL 104
>sp|Q9NR33|DPOE4_HUMAN DNA polymerase epsilon subunit 4 OS=Homo sapiens GN=POLE4 PE=1 SV=2
Length = 117
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 104 SKVCNFPMGRIKRIFKTQSSDIGITG-EAVFLVNKATDKFLEQFCEDAYECCAKDRKKSL 162
+++ P+ R+K + K D+ + G EA+F++ +A + F+E +DAY C + ++K+L
Sbjct: 36 ARLSRLPLARVKALVKA-DPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTL 94
Query: 163 AYKHL 167
+ L
Sbjct: 95 QRRDL 99
>sp|A6QQ14|DPOE4_BOVIN DNA polymerase epsilon subunit 4 OS=Bos taurus GN=POLE4 PE=3 SV=1
Length = 116
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 104 SKVCNFPMGRIKRIFKTQSSDIGITG-EAVFLVNKATDKFLEQFCEDAYECCAKDRKKSL 162
+++ P+ R+K + K D+ + G EA+F++ +A + F+E +DAY C + ++K+L
Sbjct: 35 ARLSRLPLARVKALVKA-DPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTL 93
Query: 163 AYKHL 167
+ L
Sbjct: 94 QRRDL 98
>sp|Q9CQ36|DPOE4_MOUSE DNA polymerase epsilon subunit 4 OS=Mus musculus GN=Pole4 PE=3 SV=1
Length = 118
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 105 KVCNFPMGRIKRIFKTQSSDIGITG-EAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLA 163
++ P+ R+K + K D+ + G EA+F++ +A + F+E +DAY C + ++K+L
Sbjct: 38 RLSRLPLARVKALVKA-DPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQ 96
Query: 164 YKHL 167
+ L
Sbjct: 97 RRDL 100
>sp|C6Y4D0|YCGV_SCHPO Putative transcription factor C16C4.22 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC16C4.22 PE=3 SV=1
Length = 87
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 109 FPMGRIKRIFKTQSSDIGITGEA-VFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167
P+ R+KRI K Q D+ A L++ AT+ F+E+ +AY+ ++K + Y+ +
Sbjct: 10 LPLSRVKRIIK-QDEDVHYCSNASALLISVATELFVEKLATEAYQLAKLQKRKGIRYRDV 68
Query: 168 A-VVSEQSKYDFLSD 181
VV + +++FLSD
Sbjct: 69 EDVVRKDDQFEFLSD 83
>sp|Q9FMV5|NFYC4_ARATH Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana
GN=NFYC4 PE=2 SV=1
Length = 250
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 102 EVSKVCNF-----PMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAK 156
E+ +V +F P+ RIK+I K I+ EA L KA + F+ + ++ +
Sbjct: 67 EIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEE 126
Query: 157 DRKKSLAYKHLAV-VSEQSKYDFLSDYVP-EKIKAEDALAQRELAEGGEG 204
+++++L +A ++ +DFL D VP E+IK E+ A A GG G
Sbjct: 127 NKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAAS---ALGGGG 173
>sp|Q9FGP6|NFYC5_ARATH Nuclear transcription factor Y subunit C-5 OS=Arabidopsis thaliana
GN=NFYC5 PE=2 SV=1
Length = 186
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 109 FPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL- 167
FP+ RIKRI K I EA L++KA + F+ ++ + + ++ +
Sbjct: 37 FPISRIKRIMKFDPDVSMIAAEAPNLLSKACEMFVMDLTMRSWLHAQESNRLTIRKSDVD 96
Query: 168 AVVSEQSKYDFLSDYVP 184
AVVS+ +DFL D VP
Sbjct: 97 AVVSQTVIFDFLRDDVP 113
>sp|Q9EQZ7|RIMS2_MOUSE Regulating synaptic membrane exocytosis protein 2 OS=Mus musculus
GN=Rims2 PE=1 SV=1
Length = 1530
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 6 KRKEEKAKLKN----AETRKKAKPSPKKPKQSNKKTAIQNGTVSESKDEVVVTPASSSIN 61
KR++ + L+N ++ + +P P +P +S K ++ ++S S++E+ TP +S +
Sbjct: 510 KREKMETMLRNDSLSSDQSESVRPPPPRPHKSKKGGKMRQVSLSSSEEELASTPEYTSCD 569
Query: 62 DSQQDSETEQE 72
D + +SE+ E
Sbjct: 570 DVELESESVSE 580
>sp|Q86UR5|RIMS1_HUMAN Regulating synaptic membrane exocytosis protein 1 OS=Homo sapiens
GN=RIMS1 PE=1 SV=1
Length = 1692
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 6 KRKEEKAKLKN----AETRKKAKPSPKKPKQSNKKTAIQNGTVSESKDEVVVTPASSSIN 61
KR++ + L+N ++ + +PSP KP +S + + +VS S++E V TP +S
Sbjct: 488 KREKVETMLRNDSLSSDQSESVRPSPPKPHRSKRGGKKRQMSVSSSEEEGVSTPEYTSCE 547
Query: 62 DSQQDSETEQE 72
D + +SE+ E
Sbjct: 548 DVELESESVSE 558
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.304 0.122 0.322
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,080,007
Number of Sequences: 539616
Number of extensions: 2910997
Number of successful extensions: 32673
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 1275
Number of HSP's that attempted gapping in prelim test: 24269
Number of HSP's gapped (non-prelim): 7413
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 58 (26.9 bits)