Query 028748
Match_columns 204
No_of_seqs 114 out of 561
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 18:22:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028748.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2239-2242//hhsearch_pdb/028748hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2byk_A Chrac-16; nucleosome sl 1.0 1 1 188.5 5.3 101 101-201 12-114 (140)
2 4g92_C HAPE; transcription fac 1.0 1 1 167.0 8.2 83 103-185 36-119 (119)
3 1jfi_A Transcription regulator 1.0 1 1 163.2 6.5 91 102-192 5-96 (98)
4 1n1j_B NF-YC; histone-like PAI 1.0 1 1 162.5 7.7 85 101-185 12-97 (97)
5 2byk_B Chrac-14; nucleosome sl 1.0 1 1 138.7 4.7 93 103-198 4-98 (128)
6 1n1j_A NF-YB; histone-like PAI 1.0 1 1 130.6 5.1 88 103-193 3-92 (93)
7 1jfi_B DR1 protein, transcript 1.0 1 1 108.3 5.8 94 102-198 9-103 (179)
8 3b0c_W CENP-W, centromere prot 1.0 1 1 94.3 5.9 67 105-172 1-69 (76)
9 1b67_A Protein (histone HMFA); 1.0 1 1 89.1 6.6 64 108-172 2-66 (68)
10 1id3_C Histone H2A.1; nucleoso 1.0 1 1 80.6 5.0 80 102-181 19-99 (131)
No 1
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=1.00 E-value=1 Score=188.52 Aligned_cols=101 Identities=27% Similarity=0.446 Sum_probs=94.6
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCC-HHCCCCCCCC
Q ss_conf 334467899838999998319986540267999999999999999999999999-83487744333300-0023452233
Q 028748 101 DEVSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECC-AKDRKKSLAYKHLA-VVSEQSKYDF 178 (204)
Q Consensus 101 ~~~~~~~~LPlARIKrIMK~DpDv~~ISkEA~~lIsKAtELFIq~La~~A~~~A-~~~kRKTI~y~DIa-aV~~~e~feF 178 (204)
......+.||++|||||||.+|++++||++|+++|++|+|+||++|+..||.+| +..+|+||+|.||+ ||...+.|+|
T Consensus 12 ~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dF 91 (140)
T 2byk_A 12 RPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEF 91 (140)
T ss_dssp -----------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGG
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHH
T ss_conf 77535787987999999715855463267899999999999999999999999998559853689999999963861316
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 21137885469999999998505
Q 028748 179 LSDYVPEKIKAEDALAQRELAEG 201 (204)
Q Consensus 179 L~DiVP~ki~l~e~l~~rk~~~~ 201 (204)
|.|+||.++++++|++.++....
T Consensus 92 L~divP~ki~l~~~~~~~~~~~~ 114 (140)
T 2byk_A 92 LLQIVPQKIRVHQFQEMLRLNRS 114 (140)
T ss_dssp GTTTSCSCC--------------
T ss_pred HHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 75236243469999999985114
No 2
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=1.00 E-value=1 Score=167.01 Aligned_cols=83 Identities=28% Similarity=0.498 Sum_probs=80.4
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-HHCCCCCCCCCCC
Q ss_conf 446789983899999831998654026799999999999999999999999983487744333300-0023452233211
Q 028748 103 VSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLA-VVSEQSKYDFLSD 181 (204)
Q Consensus 103 ~~~~~~LPlARIKrIMK~DpDv~~ISkEA~~lIsKAtELFIq~La~~A~~~A~~~kRKTI~y~DIa-aV~~~e~feFL~D 181 (204)
+.....||++||+||||.||+++.||++|++++++|+|+||++|+..|+.+|..++|+||+|.||+ ||.+.+.|+||.|
T Consensus 36 d~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~D 115 (119)
T 4g92_C 36 DYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLID 115 (119)
T ss_dssp CSSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGTT
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHH
T ss_conf 44547899899999974197625004789999999999999999999999998634570689999999955865348887
Q ss_pred CCCC
Q ss_conf 3788
Q 028748 182 YVPE 185 (204)
Q Consensus 182 iVP~ 185 (204)
+||+
T Consensus 116 iVPk 119 (119)
T 4g92_C 116 IVPR 119 (119)
T ss_dssp TCC-
T ss_pred HCCC
T ss_conf 3789
No 3
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=1.00 E-value=1 Score=163.23 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=85.9
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-HHCCCCCCCCCC
Q ss_conf 3446789983899999831998654026799999999999999999999999983487744333300-002345223321
Q 028748 102 EVSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLA-VVSEQSKYDFLS 180 (204)
Q Consensus 102 ~~~~~~~LPlARIKrIMK~DpDv~~ISkEA~~lIsKAtELFIq~La~~A~~~A~~~kRKTI~y~DIa-aV~~~e~feFL~ 180 (204)
.....+.||++||+||||.|+++++||.+|++++++|+|+|+++|+..||.++...+|++|+|.||. ||.+++.|+||.
T Consensus 5 ~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~ 84 (98)
T 1jfi_A 5 KKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANK 84 (98)
T ss_dssp -----CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC---------
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHCCCHHHHHH
T ss_conf 55668989909999998718400210567999999999999999999999999985987406999999996686266888
Q ss_pred CCCCCCCCHHHH
Q ss_conf 137885469999
Q 028748 181 DYVPEKIKAEDA 192 (204)
Q Consensus 181 DiVP~ki~l~e~ 192 (204)
|++|.+|.+..+
T Consensus 85 divp~k~~~~~~ 96 (98)
T 1jfi_A 85 ARKEAELAAATA 96 (98)
T ss_dssp ------------
T ss_pred HCCCHHHHHHHC
T ss_conf 627307666541
No 4
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=1.00 E-value=1 Score=162.52 Aligned_cols=85 Identities=27% Similarity=0.458 Sum_probs=82.1
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-HHCCCCCCCCC
Q ss_conf 33446789983899999831998654026799999999999999999999999983487744333300-00234522332
Q 028748 101 DEVSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLA-VVSEQSKYDFL 179 (204)
Q Consensus 101 ~~~~~~~~LPlARIKrIMK~DpDv~~ISkEA~~lIsKAtELFIq~La~~A~~~A~~~kRKTI~y~DIa-aV~~~e~feFL 179 (204)
..+++.+.||++||+||||.|+++++||++|++++++|+|+||++|+..||..|..++|+||+|+||. ||.+.+.|+||
T Consensus 12 ~~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL 91 (97)
T 1n1j_B 12 VKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFL 91 (97)
T ss_dssp --------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHH
T ss_conf 67857786998999999815963253376899999999999999999999999987488607899999999648677888
Q ss_pred CCCCCC
Q ss_conf 113788
Q 028748 180 SDYVPE 185 (204)
Q Consensus 180 ~DiVP~ 185 (204)
.|+||+
T Consensus 92 ~divP~ 97 (97)
T 1n1j_B 92 IDIVPR 97 (97)
T ss_dssp TTTSCC
T ss_pred HHHCCC
T ss_conf 865789
No 5
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=1.00 E-value=1 Score=138.73 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=81.6
Q ss_pred CCCCCCCCHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-HHCCCCCCCCCC
Q ss_conf 44678998389999983-1998654026799999999999999999999999983487744333300-002345223321
Q 028748 103 VSKVCNFPMGRIKRIFK-TQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLA-VVSEQSKYDFLS 180 (204)
Q Consensus 103 ~~~~~~LPlARIKrIMK-~DpDv~~ISkEA~~lIsKAtELFIq~La~~A~~~A~~~kRKTI~y~DIa-aV~~~e~feFL~ 180 (204)
....+.||++||+|||| .+|++..||+||+++|++|||+||.+|+..||..|...+||||+|+||. |+...+.++||.
T Consensus 4 ~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~ 83 (128)
T 2byk_B 4 RIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVP 83 (128)
T ss_dssp -------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHH
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHH
T ss_conf 61032378889999998758652307799999999999999999999999999870788157999999998758098999
Q ss_pred CCCCCCCCHHHHHHHHHH
Q ss_conf 137885469999999998
Q 028748 181 DYVPEKIKAEDALAQREL 198 (204)
Q Consensus 181 DiVP~ki~l~e~l~~rk~ 198 (204)
|.++.+..|.+..+.
T Consensus 84 ---~lk~~l~~yr~~~~~ 98 (128)
T 2byk_B 84 ---SLTQDLEVYRKVVKE 98 (128)
T ss_dssp ---HHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHHH
T ss_conf ---999999999999986
No 6
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=1.00 E-value=1 Score=130.60 Aligned_cols=88 Identities=19% Similarity=0.289 Sum_probs=82.0
Q ss_pred CCCCCCCCHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-HHCCCCCCCCCC
Q ss_conf 4467899838999998319-98654026799999999999999999999999983487744333300-002345223321
Q 028748 103 VSKVCNFPMGRIKRIFKTQ-SSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLA-VVSEQSKYDFLS 180 (204)
Q Consensus 103 ~~~~~~LPlARIKrIMK~D-pDv~~ISkEA~~lIsKAtELFIq~La~~A~~~A~~~kRKTI~y~DIa-aV~~~e~feFL~ 180 (204)
......||+++|+||||.+ |++..||+||++++++|+|+||.+|+..|+.+|...+|+||+++||. |+. .|+|+.
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~---~l~F~~ 79 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS---TLGFDS 79 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH---HTTCGG
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH---HCCCHH
T ss_conf 83346477659999997717753511799999999999999999999999999881888557999999999---859674
Q ss_pred CCCCCCCCHHHHH
Q ss_conf 1378854699999
Q 028748 181 DYVPEKIKAEDAL 193 (204)
Q Consensus 181 DiVP~ki~l~e~l 193 (204)
++.|.+..+.+|.
T Consensus 80 ~i~~~~~~l~~~r 92 (93)
T 1n1j_A 80 YVEPLKLYLQKFR 92 (93)
T ss_dssp GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 6899999999986
No 7
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=1.00 E-value=1 Score=108.34 Aligned_cols=94 Identities=18% Similarity=0.252 Sum_probs=78.7
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-HHCCCCCCCCCC
Q ss_conf 3446789983899999831998654026799999999999999999999999983487744333300-002345223321
Q 028748 102 EVSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLA-VVSEQSKYDFLS 180 (204)
Q Consensus 102 ~~~~~~~LPlARIKrIMK~DpDv~~ISkEA~~lIsKAtELFIq~La~~A~~~A~~~kRKTI~y~DIa-aV~~~e~feFL~ 180 (204)
.......||+++|.||||.......||+||..+|++|+++||.+|+..|+..|...+||||+++||. |+. .++|..
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~---~LgF~~ 85 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE---SLGFGS 85 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH---HHTTGG
T ss_pred CCHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH---HCCHHH
T ss_conf 85345546798999999870885602799999999999999999999999999985898578999989988---558698
Q ss_pred CCCCCCCCHHHHHHHHHH
Q ss_conf 137885469999999998
Q 028748 181 DYVPEKIKAEDALAQREL 198 (204)
Q Consensus 181 DiVP~ki~l~e~l~~rk~ 198 (204)
.+-|.+..+..|.+..+.
T Consensus 86 fv~~lk~~L~~yre~~~~ 103 (179)
T 1jfi_B 86 YISEVKEVLQECKTVALK 103 (179)
T ss_dssp GHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999874
No 8
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=1.00 E-value=1 Score=94.33 Aligned_cols=67 Identities=18% Similarity=0.300 Sum_probs=61.9
Q ss_pred CCCCCCHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-HHCC
Q ss_conf 678998389999983-1998654026799999999999999999999999983487744333300-0023
Q 028748 105 KVCNFPMGRIKRIFK-TQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLA-VVSE 172 (204)
Q Consensus 105 ~~~~LPlARIKrIMK-~DpDv~~ISkEA~~lIsKAtELFIq~La~~A~~~A~~~kRKTI~y~DIa-aV~~ 172 (204)
+...||+|+|+|||| ..|+ ..||+||..+|+.++++||++|+.+|+..|...+|+||+++||. |+..
T Consensus 1 g~~~LP~A~V~rI~K~~~p~-~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 1 GRRTVPRGTLRKIIKKHKPH-LRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp ---CCCHHHHHHHHHHHCTT-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 98756520999999874788-8627999999999999999999999999999808998989999999999
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=1.00 E-value=1 Score=89.12 Aligned_cols=64 Identities=16% Similarity=0.291 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-HHCC
Q ss_conf 9983899999831998654026799999999999999999999999983487744333300-0023
Q 028748 108 NFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLA-VVSE 172 (204)
Q Consensus 108 ~LPlARIKrIMK~DpDv~~ISkEA~~lIsKAtELFIq~La~~A~~~A~~~kRKTI~y~DIa-aV~~ 172 (204)
.||.++|+||||.. +...||++|+.+++.|+|.|+.+|+.+|+.+|...+|+||+++||. ++..
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCCCCHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 99822899997428-866377999999999999999999999999999939981389999999986
No 10
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=1.00 E-value=1 Score=80.63 Aligned_cols=80 Identities=16% Similarity=0.280 Sum_probs=74.7
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-HHCCCCCCCCCC
Q ss_conf 3446789983899999831998654026799999999999999999999999983487744333300-002345223321
Q 028748 102 EVSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLA-VVSEQSKYDFLS 180 (204)
Q Consensus 102 ~~~~~~~LPlARIKrIMK~DpDv~~ISkEA~~lIsKAtELFIq~La~~A~~~A~~~kRKTI~y~DIa-aV~~~e~feFL~ 180 (204)
.....+.||++||.|+||.+.....|+..|+++++.+.|.|+..+...|++.|...++++|...||. +|.++++|+||-
T Consensus 19 S~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeEL~~Ll 98 (131)
T 1id3_C 19 SAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLL 98 (131)
T ss_dssp TGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHHHHHHT
T ss_pred CCCCCEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHCCHHHHHHH
T ss_conf 56577226779999999705323333320699999999999999999998777625986285999999982569999986
Q ss_pred C
Q ss_conf 1
Q 028748 181 D 181 (204)
Q Consensus 181 D 181 (204)
.
T Consensus 99 ~ 99 (131)
T 1id3_C 99 G 99 (131)
T ss_dssp T
T ss_pred C
T ss_conf 5
Done!