BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028749
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R55|A Chain A, Human Star-Related Lipid Transfer Protein 5
pdb|2R55|B Chain B, Human Star-Related Lipid Transfer Protein 5
Length = 231
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 9/134 (6%)
Query: 64 QWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASL 123
+WD ++ + I+ + D L + R + L R+F+ + EDGT ++S
Sbjct: 96 KWDENVTGFEIIQSITDTLCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGT----ISSN 151
Query: 124 PKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDD---SCMVTYVVQLDPAGWVPKCFVNRL 180
+ L P + +RG G E L + + +VT+ D +G++P+ V+
Sbjct: 152 ATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTF-FHTDLSGYLPQNVVDSF 210
Query: 181 NTK-LVMIIENLRK 193
+ + NL+K
Sbjct: 211 FPRSMTRFYANLQK 224
>pdb|1JSS|A Chain A, Crystal Structure Of The Mus Musculus
Cholesterol-Regulated Start Protein 4 (Stard4).
pdb|1JSS|B Chain B, Crystal Structure Of The Mus Musculus
Cholesterol-Regulated Start Protein 4 (Stard4)
Length = 224
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 16/148 (10%)
Query: 55 VANAIDAAK------QWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERR 108
V N ID + WD + ++ E+N ++R + REF+ +
Sbjct: 79 VNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEENCCVMRYTTAGQLLNIISPREFVDFSYT 138
Query: 109 ETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLED--DSCMVTYVVQL 166
E+G L V+ E +RG GW L+D ++T +Q
Sbjct: 139 VGYEEGLLSCGVSVEWSETRPEF-------VRGYNHPCGWFCVPLKDSPSQSLLTGYIQT 191
Query: 167 DPAGWVPKCFVNR-LNTKLVMIIENLRK 193
D G +P+ V+ + + L +LRK
Sbjct: 192 DLRGMIPQSAVDTAMASTLANFYSDLRK 219
>pdb|3P0L|A Chain A, Human Steroidogenic Acute Regulatory Protein
pdb|3P0L|B Chain B, Human Steroidogenic Acute Regulatory Protein
pdb|3P0L|C Chain C, Human Steroidogenic Acute Regulatory Protein
pdb|3P0L|D Chain D, Human Steroidogenic Acute Regulatory Protein
Length = 221
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 8/147 (5%)
Query: 59 IDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVV 118
++A +W+ ++ E K ++ + + I E + L R+F+ R G+ V
Sbjct: 78 MEAMGEWNPNVKEIKVLQKIGKDTFITHELAAEAAGNLVGPRDFVSV--RCAKRRGSTCV 135
Query: 119 AVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDD--SCMVTYVVQLDPAGWVPKCF 176
+A + + G P+Q IR + V+ L +T+++ +D GW+PK
Sbjct: 136 -LAGMATDF--GNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWLPKSI 192
Query: 177 VNR-LNTKLVMIIENLRKLAQACPTNK 202
+N+ L+ V +LRK ++ P ++
Sbjct: 193 INQVLSQTQVDFANHLRKRLESHPASE 219
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 121 ASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRL 180
+ L + + + KQ NS L LQ+G VV+ +E + +V + GWVP ++
Sbjct: 6 SGLEQYVVVSNYKKQENSE--LSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQ 63
Query: 181 NT 182
N+
Sbjct: 64 NS 65
>pdb|2E3M|A Chain A, Crystal Structure Of Cert Start Domain
pdb|2E3N|A Chain A, Crystal Structure Of Cert Start Domain In Complex With C6-
Ceramide (P212121)
pdb|2E3O|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
C16- Ceramide (P212121)
pdb|2E3P|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
C16- Cearmide (P1)
pdb|2E3P|B Chain B, Crystal Structure Of Cert Start Domain In Complex With
C16- Cearmide (P1)
pdb|2E3Q|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
C18- Ceramide (p212121)
pdb|2E3R|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
C18- Ceramide (P1)
pdb|2E3R|B Chain B, Crystal Structure Of Cert Start Domain In Complex With
C18- Ceramide (P1)
pdb|2E3S|A Chain A, Crystal Structure Of Cert Start Domain Co-Crystallized
With C24-Ceramide (P21)
pdb|2Z9Y|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
C10- Diacylglycerol
pdb|3H3Q|A Chain A, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-13
pdb|3H3Q|B Chain B, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-13
pdb|3H3R|A Chain A, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-14
pdb|3H3R|B Chain B, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-14
pdb|3H3S|A Chain A, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-15
pdb|3H3S|B Chain B, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-15
pdb|3H3T|A Chain A, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-16
pdb|3H3T|B Chain B, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-16
Length = 255
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 158 CMVTYVVQLDPAGWVP 173
C +TYV ++P GW P
Sbjct: 206 CKITYVANVNPGGWAP 221
>pdb|2Z9Z|A Chain A, Crystal Structure Of Cert Start Domain(N504a Mutant), In
Complex With C10-Diacylglycerol
Length = 255
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 158 CMVTYVVQLDPAGWVP 173
C +TYV ++P GW P
Sbjct: 206 CKITYVANVNPGGWAP 221
>pdb|3OS7|A Chain A, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|B Chain B, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|C Chain C, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|D Chain D, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
Length = 341
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 111 MEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVV--EKLEDDSCMVTYVVQLDP 168
++DGT + + I K NN I G + S W V +K++ D +V V
Sbjct: 83 IDDGTFKLGDKTYKFPINEA---KNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTK 139
Query: 169 AGWVPKCFVNRLNTKL 184
K F + KL
Sbjct: 140 ENEAYKYFSHEFQFKL 155
>pdb|3R23|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis
pdb|3R23|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis
pdb|3R5X|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|C Chain C, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|D Chain D, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
Length = 307
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 64 QWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNR---EFIVYERRETMEDGTLVVAV 120
+WDS++V KYIK E SI F P+ R EF Y + +D + + V
Sbjct: 167 EWDSEVVIEKYIKGEEITCSI----FDGKQLPIISIRHAAEFFDYNAK--YDDASTIEEV 220
Query: 121 ASLPKEI 127
LP E+
Sbjct: 221 IELPAEL 227
>pdb|1SY7|A Chain A, Crystal Structure Of The Catalase-1 From Neurospora
Crassa, Native Structure At 1.75a Resolution.
pdb|1SY7|B Chain B, Crystal Structure Of The Catalase-1 From Neurospora
Crassa, Native Structure At 1.75a Resolution
Length = 715
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 59 IDAAKQWDSDLVEAKYIKDLEDN 81
+DA K W DLV +YI ++E N
Sbjct: 297 LDATKIWPEDLVPVRYIGEMELN 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,748,372
Number of Sequences: 62578
Number of extensions: 210022
Number of successful extensions: 485
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 14
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)