Query 028749
Match_columns 204
No_of_seqs 123 out of 1087
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 16:23:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08871 START_STARD10-like Lip 100.0 1.2E-40 2.6E-45 263.5 23.0 181 6-200 20-205 (222)
2 cd08911 START_STARD7-like Lipi 100.0 1.8E-39 4E-44 253.8 22.7 180 6-198 18-207 (207)
3 cd08874 START_STARD9-like C-te 100.0 2.2E-39 4.7E-44 251.6 22.7 178 5-197 18-205 (205)
4 cd08904 START_STARD6-like Lipi 100.0 4.2E-39 9.1E-44 249.6 22.7 183 4-196 17-204 (204)
5 cd08910 START_STARD2-like Lipi 100.0 5.8E-39 1.3E-43 250.8 21.6 179 5-198 21-207 (207)
6 cd08868 START_STARD1_3_like Ch 100.0 1.1E-38 2.3E-43 250.0 22.1 177 8-197 23-207 (208)
7 cd08906 START_STARD3-like Chol 100.0 1.5E-38 3.2E-43 248.6 22.1 178 6-197 22-208 (209)
8 cd08870 START_STARD2_7-like Li 100.0 5.4E-38 1.2E-42 246.1 23.4 180 5-198 18-209 (209)
9 cd08867 START_STARD4_5_6-like 100.0 1.4E-37 3E-42 243.3 21.9 180 6-196 19-206 (206)
10 cd08905 START_STARD1-like Chol 100.0 1.3E-37 2.9E-42 243.5 21.0 178 6-197 22-208 (209)
11 cd08872 START_STARD11-like Cer 100.0 2E-37 4.4E-42 245.7 21.9 181 8-202 25-231 (235)
12 cd08903 START_STARD5-like Lipi 100.0 1.1E-36 2.4E-41 238.2 22.7 181 6-197 19-207 (208)
13 cd08869 START_RhoGAP C-termina 100.0 2.5E-36 5.4E-41 234.4 21.6 173 6-196 16-195 (197)
14 smart00234 START in StAR and p 100.0 7.5E-36 1.6E-40 233.3 22.5 179 6-197 16-202 (206)
15 cd08902 START_STARD4-like Lipi 100.0 4.5E-35 9.8E-40 222.8 20.3 177 7-196 21-202 (202)
16 cd08914 START_STARD15-like Lip 100.0 3.2E-35 7E-40 230.5 20.1 177 3-196 50-234 (236)
17 cd08877 START_2 Uncharacterize 100.0 3.9E-35 8.4E-40 230.9 19.9 181 7-197 20-214 (215)
18 cd08876 START_1 Uncharacterize 100.0 1.5E-34 3.2E-39 224.3 22.8 178 4-196 12-195 (195)
19 cd00177 START Lipid-binding ST 100.0 2.7E-34 5.9E-39 221.3 23.1 174 7-194 13-191 (193)
20 KOG2761 START domain-containin 100.0 7E-34 1.5E-38 217.2 20.6 185 5-201 25-218 (219)
21 cd08913 START_STARD14-like Lip 100.0 1.1E-33 2.4E-38 223.9 22.1 176 6-196 56-238 (240)
22 PF01852 START: START domain; 100.0 3.2E-33 7E-38 218.3 23.7 183 6-199 16-204 (206)
23 cd08873 START_STARD14_15-like 100.0 2.1E-33 4.6E-38 220.8 20.4 176 5-196 51-233 (235)
24 cd08907 START_STARD8-like C-te 100.0 6.6E-33 1.4E-37 211.4 20.9 175 6-196 24-203 (205)
25 cd08909 START_STARD13-like C-t 100.0 1.9E-32 4.1E-37 211.7 22.6 173 9-196 27-203 (205)
26 cd08908 START_STARD12-like C-t 100.0 3.5E-32 7.6E-37 210.5 21.5 170 9-195 27-201 (204)
27 PLN00188 enhanced disease resi 100.0 2E-29 4.4E-34 220.6 20.8 193 3-201 192-396 (719)
28 cd08875 START_ArGLABRA2_like C 99.8 6.3E-17 1.4E-21 126.6 16.0 154 35-194 59-227 (229)
29 KOG1739 Serine/threonine prote 99.7 1.3E-17 2.7E-22 139.7 10.7 183 5-198 399-603 (611)
30 cd08864 SRPBCC_DUF3074 DUF3074 99.7 1.5E-15 3.2E-20 118.5 16.6 115 59-181 62-191 (208)
31 cd07813 COQ10p_like Coenzyme Q 99.6 2.1E-14 4.6E-19 105.0 13.4 135 39-197 2-137 (138)
32 cd08866 SRPBCC_11 Ligand-bindi 99.4 1.8E-11 3.8E-16 89.9 16.2 138 39-197 2-144 (144)
33 PF11274 DUF3074: Protein of u 99.3 5.7E-10 1.2E-14 85.5 16.3 127 46-180 13-168 (184)
34 cd07819 SRPBCC_2 Ligand-bindin 99.3 6.8E-10 1.5E-14 80.7 16.0 136 37-195 3-140 (140)
35 cd05018 CoxG Carbon monoxide d 99.2 8.1E-10 1.8E-14 80.7 14.2 137 37-195 2-143 (144)
36 PRK10724 hypothetical protein; 99.2 1.5E-09 3.3E-14 81.3 15.5 142 35-200 14-156 (158)
37 cd08860 TcmN_ARO-CYC_like N-te 99.0 6.7E-08 1.5E-12 71.5 16.6 136 39-197 4-144 (146)
38 cd07821 PYR_PYL_RCAR_like Pyra 99.0 6.5E-08 1.4E-12 70.0 15.5 137 37-196 2-140 (140)
39 PF03364 Polyketide_cyc: Polyk 98.9 7.7E-08 1.7E-12 69.3 14.1 124 46-192 2-130 (130)
40 cd07817 SRPBCC_8 Ligand-bindin 98.9 1.7E-07 3.7E-12 67.9 14.7 132 38-196 2-138 (139)
41 COG2867 Oligoketide cyclase/li 98.9 5.5E-08 1.2E-12 70.5 10.8 139 37-198 3-142 (146)
42 cd08861 OtcD1_ARO-CYC_like N-t 98.7 7.3E-07 1.6E-11 65.0 14.3 134 40-196 3-141 (142)
43 cd07824 SRPBCC_6 Ligand-bindin 98.6 4.7E-06 1E-10 61.4 14.2 133 38-194 3-145 (146)
44 cd07823 SRPBCC_5 Ligand-bindin 98.6 3.6E-06 7.8E-11 62.0 13.2 139 39-196 2-145 (146)
45 cd08865 SRPBCC_10 Ligand-bindi 98.3 5.2E-05 1.1E-09 54.5 14.6 134 40-197 3-140 (140)
46 PF10604 Polyketide_cyc2: Poly 98.3 0.00038 8.3E-09 49.9 18.2 133 37-196 3-139 (139)
47 cd07818 SRPBCC_1 Ligand-bindin 98.2 0.00028 6E-09 51.8 15.8 140 37-197 3-150 (150)
48 cd07812 SRPBCC START/RHO_alpha 98.0 0.00079 1.7E-08 47.2 14.9 134 39-193 2-139 (141)
49 cd08862 SRPBCC_Smu440-like Lig 98.0 0.0012 2.6E-08 47.4 15.7 131 38-197 3-138 (138)
50 cd07822 SRPBCC_4 Ligand-bindin 98.0 0.0018 4E-08 46.4 16.2 111 38-171 2-112 (141)
51 cd07825 SRPBCC_7 Ligand-bindin 97.3 0.019 4.2E-07 41.5 14.0 137 38-196 2-144 (144)
52 cd07814 SRPBCC_CalC_Aha1-like 97.3 0.032 6.9E-07 39.8 14.8 137 38-197 2-139 (139)
53 PF06240 COXG: Carbon monoxide 97.2 0.033 7.2E-07 40.6 14.1 134 40-195 1-139 (140)
54 cd07820 SRPBCC_3 Ligand-bindin 97.2 0.039 8.6E-07 39.8 14.2 108 40-170 3-113 (137)
55 COG5637 Predicted integral mem 97.0 0.047 1E-06 41.3 13.1 137 35-197 69-210 (217)
56 COG3427 Carbon monoxide dehydr 97.0 0.076 1.6E-06 39.0 13.7 136 38-195 3-143 (146)
57 TIGR01599 PYST-A Plasmodium yo 96.9 0.15 3.3E-06 39.8 16.8 145 8-163 35-208 (208)
58 KOG2200 Tumour suppressor prot 96.6 0.00038 8.1E-09 61.1 -0.6 79 94-185 574-652 (674)
59 KOG3177 Oligoketide cyclase/li 96.6 0.042 9.1E-07 42.4 10.5 138 38-197 70-210 (227)
60 cd07816 Bet_v1-like Ligand-bin 95.6 0.61 1.3E-05 34.3 17.6 117 38-170 3-121 (148)
61 cd08893 SRPBCC_CalC_Aha1-like_ 95.3 0.64 1.4E-05 32.9 12.9 134 38-196 2-135 (136)
62 cd08899 SRPBCC_CalC_Aha1-like_ 95.2 0.91 2E-05 33.6 12.8 131 34-199 9-139 (157)
63 cd08898 SRPBCC_CalC_Aha1-like_ 95.1 0.82 1.8E-05 32.7 14.3 31 38-69 3-33 (145)
64 cd08896 SRPBCC_CalC_Aha1-like_ 94.4 1.3 2.9E-05 32.1 15.8 137 38-196 2-145 (146)
65 cd08901 SRPBCC_CalC_Aha1-like_ 94.4 1.3 2.8E-05 31.8 11.2 130 38-198 2-133 (136)
66 PF08327 AHSA1: Activator of H 94.3 1.2 2.5E-05 31.0 13.2 123 46-196 1-124 (124)
67 cd08895 SRPBCC_CalC_Aha1-like_ 92.9 2.6 5.7E-05 30.5 17.2 141 38-197 2-146 (146)
68 cd08894 SRPBCC_CalC_Aha1-like_ 92.8 2.7 5.8E-05 30.2 14.5 29 38-67 2-30 (139)
69 cd07826 SRPBCC_CalC_Aha1-like_ 90.2 5.4 0.00012 28.8 14.4 31 38-69 2-32 (142)
70 KOG3845 MLN, STAR and related 89.6 0.012 2.6E-07 47.1 -5.3 121 70-194 82-205 (241)
71 cd08900 SRPBCC_CalC_Aha1-like_ 89.0 6.8 0.00015 28.2 16.6 137 38-196 2-142 (143)
72 cd08897 SRPBCC_CalC_Aha1-like_ 88.6 6.9 0.00015 27.7 13.9 128 38-196 2-132 (133)
73 COG3832 Uncharacterized conser 85.3 12 0.00027 27.3 14.2 32 35-67 7-38 (149)
74 cd08891 SRPBCC_CalC Ligand-bin 70.9 36 0.00079 24.5 15.8 138 38-197 2-149 (149)
75 cd08892 SRPBCC_Aha1 Putative h 62.2 51 0.0011 23.0 13.1 123 38-196 2-125 (126)
76 PF08417 PaO: Pheophorbide a o 44.5 92 0.002 20.6 6.0 36 146-181 25-64 (92)
77 PTZ00220 Activator of HSP-90 A 43.3 9.1 0.0002 27.4 0.3 21 46-66 2-22 (132)
78 PF11687 DUF3284: Domain of un 36.9 82 0.0018 22.1 4.4 28 144-171 78-105 (120)
79 PF09631 Sen15: Sen15 protein; 32.5 93 0.002 21.1 4.0 27 71-100 73-99 (101)
80 COG5453 Uncharacterized conser 25.4 1E+02 0.0022 20.7 2.9 43 97-143 26-68 (96)
81 cd08036 LARP_5 La RNA-binding 20.9 85 0.0019 20.3 1.9 36 164-199 25-62 (75)
82 PF01788 PsbJ: PsbJ; InterPro 20.6 1.8E+02 0.0038 16.3 3.3 19 167-185 3-21 (40)
No 1
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=100.00 E-value=1.2e-40 Score=263.51 Aligned_cols=181 Identities=23% Similarity=0.424 Sum_probs=165.9
Q ss_pred CCCCCcEE--cCCCeEEEEEEeeeecccCCc-eeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCe
Q 028749 6 PCSRSWSI--SEDSLRRYVHFAKISKRRSGS-LHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNL 82 (204)
Q Consensus 6 ~~~~~Wk~--~~~gv~vy~~~~~~~~~~~~~-~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~ 82 (204)
...++|++ +++||++|+++. +++ +..+|+++++++++++.+++++.|.+.|++||+++.++++|++++++.
T Consensus 20 ~~~~~W~~~~~~~gi~iy~r~~------~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~ 93 (222)
T cd08871 20 DSTDGWKLKYNKNNVKVWTKNP------ENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNN 93 (222)
T ss_pred cCCCCcEEEEcCCCeEEEEeeC------CCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCC
Confidence 45679999 999999999988 554 899999999878999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCCc-ccCCeeEEEEEEEEeCCCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEE
Q 028749 83 SIIRLRFGEHSKPL-FRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVT 161 (204)
Q Consensus 83 ~i~y~~~~~~~~p~-v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~ 161 (204)
.|.|+.++ +|| +++||||+++++...+ +.++++.+|+ +|+.+|+.+|+|||.++.+||.|+|.++++|+++
T Consensus 94 ~i~y~~~~---~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv----~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt 165 (222)
T cd08871 94 DIGYYSAK---CPKPLKNRDFVNLRSWLEFG-GEYIIFNHSV----KHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLT 165 (222)
T ss_pred EEEEEEeE---CCCCCCCCeEEEEEEEEeCC-CEEEEEeccc----cCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEE
Confidence 99999998 788 9999999998876554 7777777776 7899999999999999999999999988889999
Q ss_pred EEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHHHHhCCC
Q 028749 162 YVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQACPT 200 (204)
Q Consensus 162 ~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~~~~ 200 (204)
|+.++||+|+||.||+|++++.++. ++++|++.++++++
T Consensus 166 ~~~~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~~ 205 (222)
T cd08871 166 YVTQNDPKGSLPKWVVNKATTKLAPKVMKKLHKAALKYPE 205 (222)
T ss_pred EEEecCCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988776 99999999999874
No 2
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=100.00 E-value=1.8e-39 Score=253.80 Aligned_cols=180 Identities=17% Similarity=0.248 Sum_probs=161.7
Q ss_pred CCCCCcEE--cCCCeEEEEEEeeeecccCC-ceeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecC-C
Q 028749 6 PCSRSWSI--SEDSLRRYVHFAKISKRRSG-SLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLED-N 81 (204)
Q Consensus 6 ~~~~~Wk~--~~~gv~vy~~~~~~~~~~~~-~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~-~ 81 (204)
++.++|++ +++|++||++.. ++ ++..||+++++.++|++++++++.|.+.|++||+++.++++|++.++ +
T Consensus 18 ~~~~~W~l~~~~~~i~Vy~r~~------~~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~ 91 (207)
T cd08911 18 QEPDGWEPFIEKKDMLVWRREH------PGTGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETG 91 (207)
T ss_pred ccCCCcEEEEEcCceEEEEecc------CCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCC
Confidence 46678999 999999999988 65 48899999998899999999999999999999999999999999654 8
Q ss_pred eeEEEEEecCCCCCc-ccCCeeEEEEEEEEeC-CCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcC---CC
Q 028749 82 LSIIRLRFGEHSKPL-FRNREFIVYERRETME-DGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLE---DD 156 (204)
Q Consensus 82 ~~i~y~~~~~~~~p~-v~~RDfv~~~~~~~~~-~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~---~~ 156 (204)
+.++|+..+ +|| +++||||+.+++...+ ++.+++.+.|+ .||.+|+.+|+||+..+.|+|+|+|.+ ++
T Consensus 92 ~~i~y~~~~---~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv----~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~ 164 (207)
T cd08911 92 SEIIYWEMQ---WPKPFANRDYVYVRRYIIDEENKLIVIVSKAV----QHPSYPESPKKVRVEDYWSYMVIRPHKSFDEP 164 (207)
T ss_pred CEEEEEEEE---CCCCCCCccEEEEEEEEEcCCCCEEEEEEecC----CCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCC
Confidence 899999998 888 9999999998876654 45667777666 899999999999999999999999984 56
Q ss_pred ceEEEEEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHHHHhC
Q 028749 157 SCMVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQAC 198 (204)
Q Consensus 157 ~~~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~~ 198 (204)
+|+++|..+.||||+||.|++|+++++++. ++++|+|.+++|
T Consensus 165 ~~~~~~~~~~dPgG~IP~~lvN~~~~~~~~~~l~~l~~a~~~y 207 (207)
T cd08911 165 GFEFVLTYFDNPGVNIPSYITSWVAMSGMPDFLERLRNAALKY 207 (207)
T ss_pred CeEEEEEEEeCCCCccCHHHHHHHHHhhccHHHHHHHHHHhcC
Confidence 799999999999999999999999988777 999999999875
No 3
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=100.00 E-value=2.2e-39 Score=251.58 Aligned_cols=178 Identities=19% Similarity=0.343 Sum_probs=160.8
Q ss_pred CCCCCCcEE--cCCCeEEEEEEeeeecccCCceeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCe
Q 028749 5 APCSRSWSI--SEDSLRRYVHFAKISKRRSGSLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNL 82 (204)
Q Consensus 5 ~~~~~~Wk~--~~~gv~vy~~~~~~~~~~~~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~ 82 (204)
-.++++|++ +++||++|+++. ++..+.|+++++| ++|+++++++|.|.+.|++||.++.++++|+++++++
T Consensus 18 ~~~~~gW~l~~~~~gI~Vy~k~~------~~~~~~~~ge~~v-~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~ 90 (205)
T cd08874 18 CQATAGWSYQCLEKDVVIYYKVF------NGTYHGFLGAGVI-KAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDI 90 (205)
T ss_pred hhccCCcEEEecCCCEEEEEecC------CCCcceEEEEEEE-cCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCe
Confidence 357899999 999999999987 5578999999999 9999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCCc-c--cCCeeEEEEEEEEeCCCeEEEEEeccCcccccCCCCCCC-CcEEEEEEceEEEEEEc---CC
Q 028749 83 SIIRLRFGEHSKPL-F--RNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQN-NSIRGLLLQSGWVVEKL---ED 155 (204)
Q Consensus 83 ~i~y~~~~~~~~p~-v--~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~-~~VR~~~~~~g~~i~~~---~~ 155 (204)
.++|+.+. +|| + ++||||+++.+...+++.+ +..+|| .++.+|+.+ |+|||..+.|||+|+|+ ++
T Consensus 91 ~i~y~~~~---~Pwp~~~~~RDfV~l~~~~~~~~~~v-i~~~SV----~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~ 162 (205)
T cd08874 91 CLVYLVHE---TPLCLLKQPRDFCCLQVEAKEGELSV-VACQSV----YDKSMPEPGRSLVRGEILPSAWILEPVTVEGN 162 (205)
T ss_pred EEEEEEec---CCCCCCCCCCeEEEEEEEEECCCcEE-EEEEec----ccccCCCCCCCeEEeeeEeeeEEEEECccCCC
Confidence 99999886 666 6 9999999987765455444 767776 788999886 99999999999999999 78
Q ss_pred CceEEEEEEeecCC-CCccHHHHHHHHhHHHHHHHHHHHHHHh
Q 028749 156 DSCMVTYVVQLDPA-GWVPKCFVNRLNTKLVMIIENLRKLAQA 197 (204)
Q Consensus 156 ~~~~v~~~~~~D~~-G~iP~~l~~~~~~~~~~~~~~l~k~~~~ 197 (204)
+.|+|+|+.|+||+ |.||.||+|.+++.+|..+..|+.++++
T Consensus 163 ~~t~vty~~q~DPggg~iP~~l~N~~~~~~p~~~~~~~~~~~~ 205 (205)
T cd08874 163 QYTRVIYIAQVALCGPDVPAQLLSSLSKRQPLVIARLALFLEA 205 (205)
T ss_pred CcEEEEEEEEECCCCCCCCHHHHhHHHHhccHHHHHHHHHhhC
Confidence 89999999999999 8999999999999999999999888763
No 4
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=100.00 E-value=4.2e-39 Score=249.62 Aligned_cols=183 Identities=17% Similarity=0.242 Sum_probs=161.9
Q ss_pred CCCCCCCcEE--cCCCeEEEEEEeeeecccCCceeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCC
Q 028749 4 PAPCSRSWSI--SEDSLRRYVHFAKISKRRSGSLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDN 81 (204)
Q Consensus 4 ~~~~~~~Wk~--~~~gv~vy~~~~~~~~~~~~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~ 81 (204)
--...++|++ +.++++||.++. .+.....+|+++++ +.+++++++++.+.+.|.+||+++.+.++|++++++
T Consensus 17 ~~~~~~gWk~~k~~~~~~v~~k~~-----~~~~gkl~k~egvi-~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~ 90 (204)
T cd08904 17 YSRDTSGWKVVKTSKKITVSWKPS-----RKYHGNLYRVEGII-PESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSD 90 (204)
T ss_pred hhhcccCCeEEecCCceEEEEEEc-----CCCCceEEEEEEEe-cCCHHHHHHHHhccchhhhhcccccceeeEEEeCCC
Confidence 3445699999 789999999975 13458999999999 999999999999999999999999999999999999
Q ss_pred eeEEEEEecCCCCCcccCCeeEEEEEEEEeCCCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCC--CceE
Q 028749 82 LSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLED--DSCM 159 (204)
Q Consensus 82 ~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~--~~~~ 159 (204)
+.|.|.+++..+++.+++||||.++++.+.+++.+++...|+ +||.+|+.+|+|||+++.+||+++|+++ +.|+
T Consensus 91 T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv----~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~ 166 (204)
T cd08904 91 TFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSV----EYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSK 166 (204)
T ss_pred cEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEec----ccCCCCCCCCcEEEeeeccEEEEEECCCCCCceE
Confidence 999999887433445999999999998776777888877776 9999999999999999999999999985 4799
Q ss_pred EEEEEeecCCCCccHHHHHHHH-hHHHHHHHHHHHHHH
Q 028749 160 VTYVVQLDPAGWVPKCFVNRLN-TKLVMIIENLRKLAQ 196 (204)
Q Consensus 160 v~~~~~~D~~G~iP~~l~~~~~-~~~~~~~~~l~k~~~ 196 (204)
++++.++||+|+||.+++|++. +.+..|+.+|++.++
T Consensus 167 l~~~~~~DlkG~lP~~vv~~~~~~~~~~f~~~~~~~~~ 204 (204)
T cd08904 167 LVMFVQPELRGNLSRSVIEKTMPTNLVNLILDAKDGIK 204 (204)
T ss_pred EEEEEEeCCCCCCCHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 9999999999999999999995 556669999999763
No 5
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=100.00 E-value=5.8e-39 Score=250.82 Aligned_cols=179 Identities=20% Similarity=0.313 Sum_probs=156.7
Q ss_pred CCCCCCcEE--cCCCeEEEEEEeeeecccCCc-eeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCC
Q 028749 5 APCSRSWSI--SEDSLRRYVHFAKISKRRSGS-LHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDN 81 (204)
Q Consensus 5 ~~~~~~Wk~--~~~gv~vy~~~~~~~~~~~~~-~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~ 81 (204)
....++|++ +++|++||+|.. +++ +..||+++++++++++.+++++.|++.|++||+++.+ ++++.+++
T Consensus 21 ~~~~~~W~l~~~~~~i~Vy~r~~------~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~--~~~~~~~~ 92 (207)
T cd08910 21 ALDGAAWELLVESSGISIYRLLD------EQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE--LYEKECDG 92 (207)
T ss_pred CCCCCCeEEEEecCCeEEEEecc------CCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh--heeecCCC
Confidence 345588999 999999999987 554 8899999999669999999999999999999999987 67777888
Q ss_pred eeEEEEEecCCCCCc-ccCCeeEEEEEEEEe-CCC-e-EEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCc
Q 028749 82 LSIIRLRFGEHSKPL-FRNREFIVYERRETM-EDG-T-LVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDS 157 (204)
Q Consensus 82 ~~i~y~~~~~~~~p~-v~~RDfv~~~~~~~~-~~g-~-~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~ 157 (204)
..++|+.++ +|| +++||||+++++... .+| . ++++.+|+ .||.+|+++|+||+..+.++|+|+|.++++
T Consensus 93 ~~i~y~~~k---~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~----~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~ 165 (207)
T cd08910 93 ETVIYWEVK---YPFPLSNRDYVYIRQRRDLDVEGRKIWVILARST----SLPQLPEKPGVIRVKQYKQSLAIESDGKKG 165 (207)
T ss_pred CEEEEEEEE---cCCCCCCceEEEEEEeccccCCCCeEEEEEecCC----CCCCCCCCCCCEEEEEEEEEEEEEeCCCCc
Confidence 899999998 788 999999988765432 233 2 35556555 899999999999999999999999998888
Q ss_pred eEEEEEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHHHHhC
Q 028749 158 CMVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQAC 198 (204)
Q Consensus 158 ~~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~~ 198 (204)
|+++|+.++||||+||.|++|++++.++. ++++|++.+++|
T Consensus 166 t~i~~~~~~DPgG~IP~wlvN~~~~~~~~~~l~~l~ka~~~y 207 (207)
T cd08910 166 SKVFMYYFDNPGGMIPSWLINWAAKNGVPNFLKDMQKACQNY 207 (207)
T ss_pred eEEEEEEEeCCCCcchHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999988887 999999999875
No 6
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=100.00 E-value=1.1e-38 Score=250.00 Aligned_cols=177 Identities=19% Similarity=0.374 Sum_probs=157.1
Q ss_pred CCCcEE--cCC-CeEEEEEEeeeecccCCceeEEEEEEEEecCCHHHHHH-HHhcccccccchhhccceeeeeeecCCee
Q 028749 8 SRSWSI--SED-SLRRYVHFAKISKRRSGSLHTFRSRWLLKSVSPQQFIT-VANAIDAAKQWDSDLVEAKYIKDLEDNLS 83 (204)
Q Consensus 8 ~~~Wk~--~~~-gv~vy~~~~~~~~~~~~~~~~~k~~~~i~~~~~~~v~~-~l~d~~~r~~wd~~~~~~~~l~~~~~~~~ 83 (204)
+++|++ +++ |+++|++.. +++...+|+++++ ++|++++++ ++.|.+.|++||+.+.++++|+++++++.
T Consensus 23 ~~~W~l~~~~~~~i~i~~r~~------~~~~~~~k~~~~i-~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~ 95 (208)
T cd08868 23 DPGWKLEKNTTWGDVVYSRNV------PGVGKVFRLTGVL-DCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTD 95 (208)
T ss_pred CCCceEEEecCCCCEEEEEEc------CCCceEEEEEEEE-cCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcE
Confidence 459999 666 999999998 6666889999999 999999986 56699999999999999999999999999
Q ss_pred EEEEEecCCCCCc-ccCCeeEEEEEEEEeCCCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCC--CceEE
Q 028749 84 IIRLRFGEHSKPL-FRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLED--DSCMV 160 (204)
Q Consensus 84 i~y~~~~~~~~p~-v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~--~~~~v 160 (204)
|+|+.++ .+.|| +++||||.++++...+ +.++++..|+ +||.+|+.+|+|||..+.+||+|+|+++ ++|.+
T Consensus 96 i~y~~~~-~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv----~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v 169 (208)
T cd08868 96 ISYQVAA-EAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSV----EHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNF 169 (208)
T ss_pred EEEEEec-CcCCCcccccceEEEEEEEecC-CeEEEEEEec----cCCCCCCCCCeEEEeccccEEEEEECCCCCCceEE
Confidence 9998886 33346 9999999998886654 6677777666 7899999999999999999999999975 68999
Q ss_pred EEEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHHHHh
Q 028749 161 TYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQA 197 (204)
Q Consensus 161 ~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~ 197 (204)
+|++++||+|+||.||+|++++..+. ++++||+++++
T Consensus 170 ~~~~~~Dp~G~iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 170 TWLLNTDLKGWLPQYLVDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred EEEEEECCCCCCcceeeehhhHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999887776 99999999875
No 7
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=100.00 E-value=1.5e-38 Score=248.62 Aligned_cols=178 Identities=16% Similarity=0.253 Sum_probs=155.1
Q ss_pred CCCCCcEE--c-CCCeEEEEEEeeeecccCCceeEEEEEEEEecCCHHHHH-HHHhcccccccchhhccceeeeeeecCC
Q 028749 6 PCSRSWSI--S-EDSLRRYVHFAKISKRRSGSLHTFRSRWLLKSVSPQQFI-TVANAIDAAKQWDSDLVEAKYIKDLEDN 81 (204)
Q Consensus 6 ~~~~~Wk~--~-~~gv~vy~~~~~~~~~~~~~~~~~k~~~~i~~~~~~~v~-~~l~d~~~r~~wd~~~~~~~~l~~~~~~ 81 (204)
..+++|++ + ++|++||++.. +++...||+++++ ++|++.++ +++.|++.+++||+++.++++|++++++
T Consensus 22 ~~~~~W~l~~~~~~gi~V~s~~~------~~~~~~fk~~~~v-~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~ 94 (209)
T cd08906 22 AQEENWKFEKNNDNGDTVYTLEV------PFHGKTFILKAFM-QCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDN 94 (209)
T ss_pred hcccCCEEEEecCCCCEEEEecc------CCCCcEEEEEEEE-cCCHHHHHHHHHhChhhccccCccchhhhheeeccCC
Confidence 34689998 4 48999999987 6655889999999 99999997 6899999999999999999999999999
Q ss_pred eeEEEEEecCCCC-Cc-ccCCeeEEEEEEEEeCCCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEc--CCCc
Q 028749 82 LSIIRLRFGEHSK-PL-FRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKL--EDDS 157 (204)
Q Consensus 82 ~~i~y~~~~~~~~-p~-v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~--~~~~ 157 (204)
+.|+| .+. .+. +| +++||||+++++...+++. +++..|+ .|+.+|+.+|+|||.++.+||.+.|. +++.
T Consensus 95 ~~i~Y-~v~-~p~~~~pv~~RDfV~~r~~~~~~~~~-i~~~~sv----~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~ 167 (209)
T cd08906 95 TLVSY-DVA-AGAAGGVVSPRDFVNVRRIERRRDRY-VSAGIST----THSHKPPLSKYVRGENGPGGFVVLKSASNPSV 167 (209)
T ss_pred cEEEE-EEc-cccccCCCCCCceEEEEEEEecCCcE-EEEEEEE----ecCCCCCCCCeEEEeeeccEEEEEECCCCCCc
Confidence 99998 554 222 23 9999999999987766664 4455565 89999999999999999999999984 5778
Q ss_pred eEEEEEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHHHHh
Q 028749 158 CMVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQA 197 (204)
Q Consensus 158 ~~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~ 197 (204)
|+++|++|+||||+||.||+|+++...|. ++++||++++.
T Consensus 168 t~vt~~~~~Dp~G~lP~~lvN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 168 CTFIWILNTDLKGRLPRYLIHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred eEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998887 99999999864
No 8
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=100.00 E-value=5.4e-38 Score=246.08 Aligned_cols=180 Identities=14% Similarity=0.266 Sum_probs=162.3
Q ss_pred CCCCCCcEE--cCCC----eEEEEEEeeeecccCC-ceeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeee
Q 028749 5 APCSRSWSI--SEDS----LRRYVHFAKISKRRSG-SLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKD 77 (204)
Q Consensus 5 ~~~~~~Wk~--~~~g----v~vy~~~~~~~~~~~~-~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~ 77 (204)
...+++|++ +++| +++|+++. ++ ++.+||++++++++|++.+++++.|.+.|++||.++.+.++|++
T Consensus 18 ~~~~~~W~~~~~k~~~~~~i~vy~r~~------~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~ 91 (209)
T cd08870 18 GAEGQAWQQVMDKSTPDMSYQAWRRKP------KGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEE 91 (209)
T ss_pred cCCCCcceEhhhccCCCceEEEEeccc------CCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEe
Confidence 344589999 9999 99999988 64 48899999999888999999999999999999999999999999
Q ss_pred ecC-CeeEEEEEecCCCCCc-ccCCeeEEEEEEEEeCCCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEc--
Q 028749 78 LED-NLSIIRLRFGEHSKPL-FRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKL-- 153 (204)
Q Consensus 78 ~~~-~~~i~y~~~~~~~~p~-v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~-- 153 (204)
.++ +..|+|+.++ +|| +++||||+.++++..+++.++++..|+ .||.+|+. |+||+..+.++|.|+|.
T Consensus 92 ~~~~~~~i~y~~~~---~P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv----~~~~~P~~-~~vRv~~~~~~~~i~p~~~ 163 (209)
T cd08870 92 DEKSGTEIVRWVKK---FPFPLSDREYVIARRLWESDDRSYVCVTKGV----PYPSVPRS-GRKRVDDYESSLVIRAVKG 163 (209)
T ss_pred cCCCCcEEEEEEEE---CCCcCCCceEEEEEEEEEcCCCEEEEEEeCC----cCCCCCCC-CcEEEEEEEeEEEEEEecC
Confidence 544 5899999998 888 999999999887766678888888776 78899998 99999999999999999
Q ss_pred CCCceEEEEEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHHHHhC
Q 028749 154 EDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQAC 198 (204)
Q Consensus 154 ~~~~~~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~~ 198 (204)
++++|.++|..+.||+|+||.||+|++++..+. ++++|++.+++|
T Consensus 164 ~~~~t~~~~~~~~dp~G~IP~wlvN~~~~~~~~~~l~~l~~a~~~Y 209 (209)
T cd08870 164 DGQGSACEVTYFHNPDGGIPRELAKLAVKRGMPGFLKKLENALRKY 209 (209)
T ss_pred CCCceEEEEEEEECCCCCCCHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 677899999999999999999999999988887 999999999875
No 9
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=100.00 E-value=1.4e-37 Score=243.31 Aligned_cols=180 Identities=17% Similarity=0.270 Sum_probs=158.0
Q ss_pred CCCCCcEE--cCCCeEEEEEEeeeecccCC-ceeEEEEEEEEecCCHHHHHHHHhc--ccccccchhhccceeeeeeecC
Q 028749 6 PCSRSWSI--SEDSLRRYVHFAKISKRRSG-SLHTFRSRWLLKSVSPQQFITVANA--IDAAKQWDSDLVEAKYIKDLED 80 (204)
Q Consensus 6 ~~~~~Wk~--~~~gv~vy~~~~~~~~~~~~-~~~~~k~~~~i~~~~~~~v~~~l~d--~~~r~~wd~~~~~~~~l~~~~~ 80 (204)
...++|++ +++|+++|+++. .+ ..+.+|+++++ +++++++++++.| .+.|++||+.+.++++|+++++
T Consensus 19 ~~~~~W~~~~~~~~i~v~~~~~------~~~~~~~~k~~~~i-~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~ 91 (206)
T cd08867 19 NDTDGWKVLKTVKNITVSWKPS------TEFTGHLYRAEGIV-DALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISE 91 (206)
T ss_pred cCcCCcEEEEcCCCcEEEEecC------CCCCCEEEEEEEEE-cCCHHHHHHHHHhcCccccccccccccceEEEEEeCC
Confidence 34589999 889999999965 33 35889999999 9999999999998 8899999999999999999999
Q ss_pred CeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcC--CCce
Q 028749 81 NLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLE--DDSC 158 (204)
Q Consensus 81 ~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~--~~~~ 158 (204)
++.+.|+.+...+.+.+++||||+++++...++|.+++...|+ +||.+|+.+|+|||.+..+||+++|.+ ++.|
T Consensus 92 ~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv----~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t 167 (206)
T cd08867 92 DLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSV----DIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKS 167 (206)
T ss_pred CeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEec----cCCCCCCCCCcEEEEeecCEEEEEECCCCCCce
Confidence 9999998664211233999999999887777778787777776 899999999999999999999999986 4679
Q ss_pred EEEEEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHHHH
Q 028749 159 MVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQ 196 (204)
Q Consensus 159 ~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~ 196 (204)
.++|++++||+|+||.||+|+++.+.+. ++++||+.++
T Consensus 168 ~~~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~lr~~~~ 206 (206)
T cd08867 168 FLVLYVQTDLRGMIPQSLVESAMPSNLVNFYTDLVKGVK 206 (206)
T ss_pred EEEEEEEeccCCCCcHHHHHhhhhhhHHHHHHHHHHhcC
Confidence 9999999999999999999999888887 9999999863
No 10
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=100.00 E-value=1.3e-37 Score=243.54 Aligned_cols=178 Identities=16% Similarity=0.296 Sum_probs=155.5
Q ss_pred CCCCCcEE---cCCCeEEEEEEeeeecccCCceeEEEEEEEEecCCHHHHH-HHHhcccccccchhhccceeeeeeecCC
Q 028749 6 PCSRSWSI---SEDSLRRYVHFAKISKRRSGSLHTFRSRWLLKSVSPQQFI-TVANAIDAAKQWDSDLVEAKYIKDLEDN 81 (204)
Q Consensus 6 ~~~~~Wk~---~~~gv~vy~~~~~~~~~~~~~~~~~k~~~~i~~~~~~~v~-~~l~d~~~r~~wd~~~~~~~~l~~~~~~ 81 (204)
...++|++ +++|+++|++.. +++...||+++++ +++++.++ +++.|.+.+++|+++|.++++|++++++
T Consensus 22 ~~~~~W~~~~~~~~gi~v~s~~~------~~~~k~~k~e~~i-~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~ 94 (209)
T cd08905 22 QDQEGWKTEIVAENGDKVLSKVV------PDIGKVFRLEVVV-DQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKD 94 (209)
T ss_pred ccccCCEEEEecCCCCEEEEEEc------CCCCcEEEEEEEe-cCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCC
Confidence 45679999 467999999988 6655999999999 99999999 6677999999999999999999999999
Q ss_pred eeEEEEEecCCCCC-c-ccCCeeEEEEEEEEeCCCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCC--Cc
Q 028749 82 LSIIRLRFGEHSKP-L-FRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLED--DS 157 (204)
Q Consensus 82 ~~i~y~~~~~~~~p-~-v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~--~~ 157 (204)
+.|+|+.. .+.| | +++||||.++++...+++. +++..|+ +|+.+|+.+|+|||+.+.+||+|+|+++ +.
T Consensus 95 ~~i~y~~~--~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~----~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~ 167 (209)
T cd08905 95 TLITHEVA--AETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMAT----HFGLMPEQKGFIRAENGPTCIVLRPLAGDPSK 167 (209)
T ss_pred ceEEEEEe--ccCCCCccCccceEEEEEEEEcCCcE-EEEEEee----cCCCCCCCCCeEEEEeeccEEEEEECCCCCCc
Confidence 99999833 3444 4 9999999988887655444 4445454 8999999999999999999999999976 78
Q ss_pred eEEEEEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHHHHh
Q 028749 158 CMVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQA 197 (204)
Q Consensus 158 ~~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~ 197 (204)
|+++|++++||||+||.||+|+++...|. ++++||+++..
T Consensus 168 t~v~~~~~~DpkG~iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 168 TKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred eEEEEEEeecCCCCCCHHHHHHHhHHhHHHHHHHHHHHHhc
Confidence 99999999999999999999999888887 99999999873
No 11
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=100.00 E-value=2e-37 Score=245.73 Aligned_cols=181 Identities=15% Similarity=0.321 Sum_probs=156.5
Q ss_pred CCCcEE--cCCCeEEEEEEeeeecccCCc-ee--EEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCe
Q 028749 8 SRSWSI--SEDSLRRYVHFAKISKRRSGS-LH--TFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNL 82 (204)
Q Consensus 8 ~~~Wk~--~~~gv~vy~~~~~~~~~~~~~-~~--~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~ 82 (204)
+.+|++ +++|++||+++. +++ +. .+|+++++++++++++++++.|++.|.+||.++.++++|+++++++
T Consensus 25 ~~~W~l~~~~~gikVy~r~~------~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~~~~ 98 (235)
T cd08872 25 ADGWQLFAEEGEMKVYRREV------EEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLSQDT 98 (235)
T ss_pred CCCCEEEEeCCceEEEEEEC------CCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecCCCC
Confidence 448999 999999999988 554 44 7999999966999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCCc-ccCCeeEEEEEEEEeCC-------CeEEEEEeccCcccccCCCCCCCCcEEEEEEc---------
Q 028749 83 SIIRLRFGEHSKPL-FRNREFIVYERRETMED-------GTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQ--------- 145 (204)
Q Consensus 83 ~i~y~~~~~~~~p~-v~~RDfv~~~~~~~~~~-------g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~--------- 145 (204)
.|+|+.++ .|| +++||||+.+++...++ +.++++..|+ +||.+|+.+|+||+....
T Consensus 99 ~I~Y~~~k---~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv----~h~~~P~~~g~VRv~~~~~~~~~~~i~ 171 (235)
T cd08872 99 LIFHQTHK---RVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSV----DHDSAPLNNKCVRAKLTVAMICQTFVS 171 (235)
T ss_pred EEEEEEcc---CCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecc----cCccCCCCCCeEEEEEEeeeeeeeeee
Confidence 99999988 788 99999999988766554 4567777776 899999999999999744
Q ss_pred ---eEEEEEEcCCCceEEEEEEeecCCCCccHHHHHHHHhHHH-HHHHHHHHHHHhCCCCC
Q 028749 146 ---SGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLV-MIIENLRKLAQACPTNK 202 (204)
Q Consensus 146 ---~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~l~~~~~~~~~-~~~~~l~k~~~~~~~~~ 202 (204)
+.|.++| ++++|+|+|++++||||+||.|++|+++++.. .++++|..++.+.-.+|
T Consensus 172 ~~~g~~~~t~-~~~~~~ity~~~~dPgG~iP~wvvn~~~k~~~P~~l~~~~~~~~~~~~~~ 231 (235)
T cd08872 172 PPDGNQEITR-DNILCKITYVANVNPGGWAPASVLRAVYKREYPKFLKRFTSYVQEKTKGK 231 (235)
T ss_pred cCCCcccccC-CCCeEEEEEEEEeCCCCCccHHHHHHHHHhhchHHHHHHHHHHHHhcCCC
Confidence 3355666 46789999999999999999999999987655 59999999998766554
No 12
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=100.00 E-value=1.1e-36 Score=238.20 Aligned_cols=181 Identities=17% Similarity=0.283 Sum_probs=155.7
Q ss_pred CCCCCcEE--cCCCeEEEEEEeeeecccCC-ceeEEEEEEEEecCCHHHHHHHHhccc--ccccchhhccceeeeeeecC
Q 028749 6 PCSRSWSI--SEDSLRRYVHFAKISKRRSG-SLHTFRSRWLLKSVSPQQFITVANAID--AAKQWDSDLVEAKYIKDLED 80 (204)
Q Consensus 6 ~~~~~Wk~--~~~gv~vy~~~~~~~~~~~~-~~~~~k~~~~i~~~~~~~v~~~l~d~~--~r~~wd~~~~~~~~l~~~~~ 80 (204)
..+++|++ +++|++||+++. .. ....||+++++ +++++++++++.|.+ .|++||++|.++++|+++++
T Consensus 19 ~~~~~W~~~~~~~~i~v~~~~~------~~~~~~~~k~e~~i-~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~ 91 (208)
T cd08903 19 RDESGWKTCRRTNEVAVSWRPS------AEFAGNLYKGEGIV-YATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISD 91 (208)
T ss_pred ccccCCEEEEcCCCEEEEeeec------CCCCCcEEEEEEEe-cCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecC
Confidence 35789999 889999999965 22 24559999999 999999999999765 56999999999999999999
Q ss_pred CeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcC--CCce
Q 028749 81 NLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLE--DDSC 158 (204)
Q Consensus 81 ~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~--~~~~ 158 (204)
++.++|+.....+.+.+++||||+++++...++|.+++...|+ +||.+|+.+|+|||+.+.+||++++++ +++|
T Consensus 92 ~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv----~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t 167 (208)
T cd08903 92 DVSVCRTVTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNV----EHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKT 167 (208)
T ss_pred CEEEEEEecchhcCCCcCCCceEEEEEEEecCCceEEEeEEec----cCCCCCCCCCeEEEeeeccEEEEEECCCCCCce
Confidence 9999888543111112999999999998888888888776665 899999999999999998999999985 5689
Q ss_pred EEEEEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHHHHh
Q 028749 159 MVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQA 197 (204)
Q Consensus 159 ~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~ 197 (204)
.++|++++||||+||.|++|+++.+.+. ++.+||+++++
T Consensus 168 ~v~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 168 QLVSFFQTDLSGYLPQTVVDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred EEEEEEEeccCCCcCHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999877776 99999999975
No 13
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=100.00 E-value=2.5e-36 Score=234.41 Aligned_cols=173 Identities=17% Similarity=0.306 Sum_probs=152.6
Q ss_pred CCCCCcEE--cCCCeEEEEEEeeeecccCC--ceeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCC
Q 028749 6 PCSRSWSI--SEDSLRRYVHFAKISKRRSG--SLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDN 81 (204)
Q Consensus 6 ~~~~~Wk~--~~~gv~vy~~~~~~~~~~~~--~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~ 81 (204)
...++|++ +++||+||+++. ++ .+..+|++++| +++++++++.+.| .|++||+.+.++++|++++++
T Consensus 16 ~~~~~W~~~~~~~gi~I~~k~~------~~~~~l~~~K~~~~v-~a~~~~v~~~l~d--~r~~Wd~~~~~~~vie~id~~ 86 (197)
T cd08869 16 DKSKGWVSVSSSDHVELAFKKV------DDGHPLRLWRASTEV-EAPPEEVLQRILR--ERHLWDDDLLQWKVVETLDED 86 (197)
T ss_pred hccCCceEEecCCcEEEEEEeC------CCCCcEEEEEEEEEe-CCCHHHHHHHHHH--HHhccchhhheEEEEEEecCC
Confidence 35799999 899999999988 43 38899999999 9999999998876 479999999999999999999
Q ss_pred eeEEEEEecCCCCCc-ccCCeeEEEEEEEE-eCCCeEEEEEeccCcccccC-CCCCCCCcEEEEEEceEEEEEEcCCCce
Q 028749 82 LSIIRLRFGEHSKPL-FRNREFIVYERRET-MEDGTLVVAVASLPKEIAAG-LHPKQNNSIRGLLLQSGWVVEKLEDDSC 158 (204)
Q Consensus 82 ~~i~y~~~~~~~~p~-v~~RDfv~~~~~~~-~~~g~~~i~~~Sv~~s~~~~-~~P~~~~~VR~~~~~~g~~i~~~~~~~~ 158 (204)
+.|+|+.++ .|| +++||||.++.+.. .++|.+++..+|+ .|| .+|+ |+|||..+.+||+|+|.++++|
T Consensus 87 ~~i~y~~~~---~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv----~~~~~~p~--g~VR~~~~~~g~~i~p~~~~~t 157 (197)
T cd08869 87 TEVYQYVTN---SMAPHPTRDYVVLRTWRTDLPKGACVLVETSV----EHTEPVPL--GGVRAVVLASRYLIEPCGSGKS 157 (197)
T ss_pred cEEEEEEee---CCCCCCCceEEEEEEEEecCCCCcEEEEEECC----cCCCCCCC--CCEEEEEEeeeEEEEECCCCCe
Confidence 999999887 677 99999999977654 4677888888887 664 5665 9999999999999999998899
Q ss_pred EEEEEEeecCCCCccHHHHHHHHhHHHHHHHHHHHHHH
Q 028749 159 MVTYVVQLDPAGWVPKCFVNRLNTKLVMIIENLRKLAQ 196 (204)
Q Consensus 159 ~v~~~~~~D~~G~iP~~l~~~~~~~~~~~~~~l~k~~~ 196 (204)
+|+|++++||+|+||.|++|.....++..+.+||.-++
T Consensus 158 ~vty~~~~Dp~G~iP~wl~N~~~~~~~~~~~~l~~~~~ 195 (197)
T cd08869 158 RVTHICRVDLRGRSPEWYNKVYGHLCARELLRIRDSFR 195 (197)
T ss_pred EEEEEEEECCCCCCCceeecchHhHHHHHHHHHHhhcc
Confidence 99999999999999999999988778878899987543
No 14
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=100.00 E-value=7.5e-36 Score=233.33 Aligned_cols=179 Identities=18% Similarity=0.307 Sum_probs=159.0
Q ss_pred CCCCCcEE--c-CCCeEEEEEEeeeecccCC--ceeEEEEEEEEecCCHHH-HHHHHhcccccccchhhccceeeeeeec
Q 028749 6 PCSRSWSI--S-EDSLRRYVHFAKISKRRSG--SLHTFRSRWLLKSVSPQQ-FITVANAIDAAKQWDSDLVEAKYIKDLE 79 (204)
Q Consensus 6 ~~~~~Wk~--~-~~gv~vy~~~~~~~~~~~~--~~~~~k~~~~i~~~~~~~-v~~~l~d~~~r~~wd~~~~~~~~l~~~~ 79 (204)
..+++|++ + ++|+.+|++.. ++ .+..+|+++++ +.++++ +.+++.|.+.|++||+++.++++|++++
T Consensus 16 ~~~~~W~~~~~~~~~~~~~~~~~------~~~~~~~~~k~~~~v-~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~ 88 (206)
T smart00234 16 ASEPGWVLSSENENGDEVRSILS------PGRSPGEASRAVGVV-PMVCADLVEELMDDLRYRPEWDKNVAKAETLEVID 88 (206)
T ss_pred CCCCccEEccccCCcceEEEEcc------CCCCceEEEEEEEEE-ecChHHHHHHHHhcccchhhCchhcccEEEEEEEC
Confidence 35678999 4 78999999977 44 48999999999 777775 7788999999999999999999999999
Q ss_pred CCeeEEEEEecCCCC-CcccCCeeEEEEEEEEeCCCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCce
Q 028749 80 DNLSIIRLRFGEHSK-PLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSC 158 (204)
Q Consensus 80 ~~~~i~y~~~~~~~~-p~v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~ 158 (204)
+++.|+|+.++ .++ | +++||||+++++...++|.++++.+|+ +|+..|+.+|+|||+.+.+||+|+|++++.|
T Consensus 89 ~~~~i~~~~~~-~~~~p-~~~RDfv~~r~~~~~~~~~~vi~~~Sv----~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t 162 (206)
T smart00234 89 NGTVIYHYVSK-FVAGP-VSPRDFVFVRYWRELVDGSYAVVDVSV----THPTSPPTSGYVRAENLPSGLLIEPLGNGPS 162 (206)
T ss_pred CCCeEEEEEEe-cccCc-CCCCeEEEEEEEEEcCCCcEEEEEEEC----CCCCCCCCCCceEEEEeceEEEEEECCCCCe
Confidence 99999999887 333 3 999999999988777788888877777 7899999999999999999999999998889
Q ss_pred EEEEEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHHHHh
Q 028749 159 MVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQA 197 (204)
Q Consensus 159 ~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~ 197 (204)
+++|+.++||+|+||.|++|.+.+..+. +++.+++.++.
T Consensus 163 ~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~ 202 (206)
T smart00234 163 KVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQK 202 (206)
T ss_pred EEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999988887 99999998864
No 15
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=100.00 E-value=4.5e-35 Score=222.81 Aligned_cols=177 Identities=19% Similarity=0.308 Sum_probs=153.5
Q ss_pred CCCCcEE--cCCCeEEEEEEeeeecccCCceeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeE
Q 028749 7 CSRSWSI--SEDSLRRYVHFAKISKRRSGSLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSI 84 (204)
Q Consensus 7 ~~~~Wk~--~~~gv~vy~~~~~~~~~~~~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i 84 (204)
.+++|++ +++|+.+|.++. .+.++..||+++++ +..++++++.+.+...|.+||+++.++++|+++++++.|
T Consensus 21 ~~~~Wkl~k~~~~~~v~~k~~-----~ef~gkl~R~Egvv-~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~dt~I 94 (202)
T cd08902 21 LEEEWRVAKKSKDVTVWRKPS-----EEFGGYLYKAQGVV-EDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEENCCV 94 (202)
T ss_pred cccCcEEEEeCCCEEEEEecC-----CcCCCceEEEEEEe-cCCHHHHHHHHhcccchhcccchhhheeHhhhhcCCcEE
Confidence 6789999 779999999977 13459999999999 899999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCcccCCeeEEEEEEEEeCCCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCC--CceEEEE
Q 028749 85 IRLRFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLED--DSCMVTY 162 (204)
Q Consensus 85 ~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~--~~~~v~~ 162 (204)
.++.....+++++++||||.+++....++|.+ .++.|+ +|+..|+ |+|||+++.+||++.|.++ +.|.+++
T Consensus 95 ~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~~-s~gvs~----~~~~~pp--g~VRgen~p~g~i~~Pl~~~p~k~~~t~ 167 (202)
T cd08902 95 MRYTTAGQLLNIISPREFVDFSYTTQYEDGLL-SCGVSI----EYEEARP--NFVRGFNHPCGWFCVPLKDNPSHSLLTG 167 (202)
T ss_pred EEEEcccCCcCccCccceEEEEEEEEeCCCeE-EEEeee----cCCCCCC--CeEeecccccEEEEEECCCCCCceEEEE
Confidence 86666544444599999999999888888874 345444 7777666 9999999999999999985 4789999
Q ss_pred EEeecCCCCccHHHHHHH-HhHHHHHHHHHHHHHH
Q 028749 163 VVQLDPAGWVPKCFVNRL-NTKLVMIIENLRKLAQ 196 (204)
Q Consensus 163 ~~~~D~~G~iP~~l~~~~-~~~~~~~~~~l~k~~~ 196 (204)
+.++||+|+||+.++|++ ++.+..|+.+|||.++
T Consensus 168 ~lq~DLkG~LPqsiIdq~~~~~~~~F~~~Lrk~~~ 202 (202)
T cd08902 168 YIQTDLRGMLPQSAVDTAMASTLVNFYSDLKKALK 202 (202)
T ss_pred EEEecCCCCccHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 999999999999999999 5677779999999874
No 16
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=100.00 E-value=3.2e-35 Score=230.49 Aligned_cols=177 Identities=15% Similarity=0.241 Sum_probs=151.7
Q ss_pred CCCCCCCCcEE--cCCCeEEEEEEeeeecccCCceeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecC
Q 028749 3 SPAPCSRSWSI--SEDSLRRYVHFAKISKRRSGSLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLED 80 (204)
Q Consensus 3 ~~~~~~~~Wk~--~~~gv~vy~~~~~~~~~~~~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~ 80 (204)
....++++|++ +++||+||+++. +.+..||+++.+ ++|++.++++|.|++.|++||.++.++++|+++++
T Consensus 50 ~~~a~~~~W~l~~dkdgIkVytr~~-------s~~l~fk~e~~v-dvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~ 121 (236)
T cd08914 50 KKLAAKSGWEVTSTVEKIKIYTLEE-------HDVLSVWVEKHV-KRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSE 121 (236)
T ss_pred hhhcccCCCEEEEccCCEEEEEecC-------CCcEEEEEEEEE-cCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCC
Confidence 45567899999 999999999943 447899999999 99999999999999999999999999999999999
Q ss_pred CeeEEEEEecCCCCCc--ccCCeeEEEEEEEEeC-CCe-EEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCC
Q 028749 81 NLSIIRLRFGEHSKPL--FRNREFIVYERRETME-DGT-LVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDD 156 (204)
Q Consensus 81 ~~~i~y~~~~~~~~p~--v~~RDfv~~~~~~~~~-~g~-~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~ 156 (204)
+.. +|+.++ .|| +++||||+++.+...+ +|. +++...|+ .|+.+|+.+|+||+..+++||.|+|++++
T Consensus 122 ~~~-vY~~~~---pPw~Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SV----p~~~~Pp~kg~VRv~~~~~G~~I~pl~~~ 193 (236)
T cd08914 122 DDQ-IYHITC---PIVNNDKPKDLVVLVSRRKPLKDGNTYVVAVKSV----ILPSVPPSPQYIRSEIICAGFLIHAIDSN 193 (236)
T ss_pred CcC-EEEEec---CCCCCCCCceEEEEEEEEecCCCCCEEEEEEeec----ccccCCCCCCcEEeEEEEEEEEEEEcCCC
Confidence 888 676665 666 9999999987765444 664 87878777 78999999999999999999999999999
Q ss_pred ceEEEEEEeecCCCCccHHHHHHH-HhHHHH-HHHHHHHHHH
Q 028749 157 SCMVTYVVQLDPAGWVPKCFVNRL-NTKLVM-IIENLRKLAQ 196 (204)
Q Consensus 157 ~~~v~~~~~~D~~G~iP~~l~~~~-~~~~~~-~~~~l~k~~~ 196 (204)
+|+|+|..|+|| |+||.|++|.. ..+... ++.+..++++
T Consensus 194 ~~~VtY~~~~dP-g~lp~~~~n~~~~~~~~~~~~~~~~~~~~ 234 (236)
T cd08914 194 SCTVSYFNQISA-SILPYFAGNLGGWSKSIEETAASCIQFLE 234 (236)
T ss_pred cEEEEEEEEcCC-ccchheEEecchhhhHHHHHHHHHHHHHh
Confidence 999999999999 99999999987 333333 5666655554
No 17
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=100.00 E-value=3.9e-35 Score=230.93 Aligned_cols=181 Identities=22% Similarity=0.407 Sum_probs=161.0
Q ss_pred CCCCcEE--cCCCeEEEEEEeeeecccCCc-eeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCee
Q 028749 7 CSRSWSI--SEDSLRRYVHFAKISKRRSGS-LHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLS 83 (204)
Q Consensus 7 ~~~~Wk~--~~~gv~vy~~~~~~~~~~~~~-~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~ 83 (204)
.+++|++ +++|+++|++.. +++ .+.+|+++++ ++|++.+++++.|++.+++|+++|.+++.|++++.+..
T Consensus 20 ~~~~W~~~~~~~~i~v~~r~~------~~~~~~~~k~e~~i-~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~ 92 (215)
T cd08877 20 ESDGWTLQKESEGIRVYYKFE------PDGSLLSLRMEGEI-DGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADK 92 (215)
T ss_pred CCCCcEEeccCCCeEEEEEeC------CCCCEEEEEEEEEe-cCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceE
Confidence 3789999 899999999998 665 9999999999 99999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCc-ccCCeeEEEEEE-EEe-CCCeEEEEEeccCcccc-----cCCCCCCC-CcEEEEEEceEEEEEEcC
Q 028749 84 IIRLRFGEHSKPL-FRNREFIVYERR-ETM-EDGTLVVAVASLPKEIA-----AGLHPKQN-NSIRGLLLQSGWVVEKLE 154 (204)
Q Consensus 84 i~y~~~~~~~~p~-v~~RDfv~~~~~-~~~-~~g~~~i~~~Sv~~s~~-----~~~~P~~~-~~VR~~~~~~g~~i~~~~ 154 (204)
++|+.++ +|| +++||+|+.... ... ++|.+++...|++...+ ...+|+.+ |+||+....+||+|+|++
T Consensus 93 v~y~~~~---~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~ 169 (215)
T cd08877 93 VCYLRVD---LPWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPIS 169 (215)
T ss_pred EEEEEEe---CceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcC
Confidence 9999998 888 999999976432 233 78889888888841110 11278888 999999999999999999
Q ss_pred CCceEEEEEEeecCCCC-ccHHHHHHHHhHHHH-HHHHHHHHHHh
Q 028749 155 DDSCMVTYVVQLDPAGW-VPKCFVNRLNTKLVM-IIENLRKLAQA 197 (204)
Q Consensus 155 ~~~~~v~~~~~~D~~G~-iP~~l~~~~~~~~~~-~~~~l~k~~~~ 197 (204)
+++|.++|+.++||+|+ ||.||+|++++.++. ++.+|++++++
T Consensus 170 ~~~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 170 PTKCYLRFVANVDPKMSLVPKSLLNFVARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred CCCeEEEEEEEcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999 999999999999997 99999999875
No 18
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=100.00 E-value=1.5e-34 Score=224.33 Aligned_cols=178 Identities=21% Similarity=0.411 Sum_probs=157.7
Q ss_pred CCCCCCCcEE--cCCCeEEEEEEeeeecccCCc-eeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecC
Q 028749 4 PAPCSRSWSI--SEDSLRRYVHFAKISKRRSGS-LHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLED 80 (204)
Q Consensus 4 ~~~~~~~Wk~--~~~gv~vy~~~~~~~~~~~~~-~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~ 80 (204)
..+++.+|++ +++|+++|+++. +++ ...+|+++++ +++++++++++.|++.|++|++.+.+++++++.++
T Consensus 12 ~~~~~~~W~~~~~~~~v~v~~~~~------~~~~~~~~k~~~~i-~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~ 84 (195)
T cd08876 12 ALAPDGDWQLVKDKDGIKVYTRDV------EGSPLKEFKAVAEV-DASIEAFLALLRDTESYPQWMPNCKESRVLKRTDD 84 (195)
T ss_pred ccCCCCCCEEEecCCCeEEEEEEC------CCCCeEEEEEEEEE-eCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCC
Confidence 4566778999 999999999988 555 7999999999 89999999999999999999999999999999888
Q ss_pred CeeEEEEEecCCCCCc-ccCCeeEEEEEEEEeC-CCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCce
Q 028749 81 NLSIIRLRFGEHSKPL-FRNREFIVYERRETME-DGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSC 158 (204)
Q Consensus 81 ~~~i~y~~~~~~~~p~-v~~RDfv~~~~~~~~~-~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~ 158 (204)
+..+.|+.++ .|| +++|||++.+++.... ++.+++...|+ .++ +|+.+++||+....++|.|+|.++++|
T Consensus 85 ~~~i~~~~~~---~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~----~~~-~P~~~~~vR~~~~~~~~~i~~~~~~~t 156 (195)
T cd08876 85 NERSVYTVID---LPWPVKDRDMVLRSTTEQDADDGSVTITLEAA----PEA-LPEQKGYVRIKTVEGQWTFTPLGNGKT 156 (195)
T ss_pred CcEEEEEEEe---cccccCCceEEEEEEEEEcCCCCEEEEEeecC----Ccc-CCCCCCeEEceeceeeEEEEECCCCeE
Confidence 8899999997 777 9999999887665443 67777766665 344 788889999999999999999998899
Q ss_pred EEEEEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHHHH
Q 028749 159 MVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQ 196 (204)
Q Consensus 159 ~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~ 196 (204)
+|+|+.++||+|+||.+++|+++++.+. .+++|+++++
T Consensus 157 ~vt~~~~~dp~g~iP~~lv~~~~~~~~~~~l~~l~~~~~ 195 (195)
T cd08876 157 RVTYQAYADPGGSIPGWLANAFAKDAPYNTLENLRKQLK 195 (195)
T ss_pred EEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999988886 9999999874
No 19
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=100.00 E-value=2.7e-34 Score=221.29 Aligned_cols=174 Identities=29% Similarity=0.584 Sum_probs=156.3
Q ss_pred CCCCcEE--cCCCeEEEEEEeeeecccCC-ceeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCee
Q 028749 7 CSRSWSI--SEDSLRRYVHFAKISKRRSG-SLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLS 83 (204)
Q Consensus 7 ~~~~Wk~--~~~gv~vy~~~~~~~~~~~~-~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~ 83 (204)
..++|++ +++|+++|.++. ++ +...+|++++| ++|++++++++.|.+.|++||+.+.++++|++++++..
T Consensus 13 ~~~~W~~~~~~~~v~vy~~~~------~~~~~~~~k~~~~i-~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~ 85 (193)
T cd00177 13 EPEGWKLVKEKDGVKIYTKPY------EDSGLKLLKAEGVI-PASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTD 85 (193)
T ss_pred cCCCeEEEEECCcEEEEEecC------CCCCceeEEEEEEE-CCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeE
Confidence 3368999 889999999988 54 48999999999 88999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCc-ccCCeeEEEEEEEEeCCCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEE
Q 028749 84 IIRLRFGEHSKPL-FRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTY 162 (204)
Q Consensus 84 i~y~~~~~~~~p~-v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~ 162 (204)
++|+.++ .|| +++||||+++.+...++|.++++..|+ +++..|+.+++|||.++.+||+|+|.++++|+++|
T Consensus 86 i~~~~~~---~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si----~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~ 158 (193)
T cd00177 86 IIYYKTK---PPWPVSPRDFVYLRRRRKLDDGTYVIVSKSV----DHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTY 158 (193)
T ss_pred EEEEEee---CCCccCCccEEEEEEEEEcCCCeEEEEEeec----CCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEE
Confidence 9999998 777 999999999887776668888888777 66678888899999999999999999888999999
Q ss_pred EEeecCCCCccHHHHHHHHhHHHH-HHHHHHHH
Q 028749 163 VVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKL 194 (204)
Q Consensus 163 ~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~ 194 (204)
+.++||+|++|.|++|++++.++. +++.++..
T Consensus 159 ~~~~D~~g~iP~~~~~~~~~~~~~~~~~~~~~~ 191 (193)
T cd00177 159 VLQVDPKGSIPKSLVNSAAKKQLASFLKDLRKA 191 (193)
T ss_pred EEeeCCCCCccHHHHHhhhhhccHHHHHHHHHh
Confidence 999999999999999999998887 55555443
No 20
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=100.00 E-value=7e-34 Score=217.22 Aligned_cols=185 Identities=17% Similarity=0.334 Sum_probs=163.6
Q ss_pred CCCCCCcEE--cCCCeEEEEEEeeeecccCCceeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeec-CC
Q 028749 5 APCSRSWSI--SEDSLRRYVHFAKISKRRSGSLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLE-DN 81 (204)
Q Consensus 5 ~~~~~~Wk~--~~~gv~vy~~~~~~~~~~~~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~-~~ 81 (204)
...+++|++ ++.++.+|+...+ .+++.+||+.++++++||+.|+++++|.|+|++||.++...++|++.+ .+
T Consensus 25 ~~~~~~We~~~~k~~~~i~~q~~~-----~~g~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d~~tg 99 (219)
T KOG2761|consen 25 CDAGQGWELVMDKSTPSIWRQRRP-----KTGLYEYKSRTVFEDVTPEIVRDVQWDDEYRKKWDDMVIELETIEEDPVTG 99 (219)
T ss_pred cCcccchhhhcccCCceEEEEccc-----CCCCEEEEEEEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhheeeeecCCCC
Confidence 367899999 9999999995331 345999999999999999999999999999999999999999999964 48
Q ss_pred eeEEEEEecCCCCCc-ccCCeeEEEEEEEEeCCCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEE-EcC---CC
Q 028749 82 LSIIRLRFGEHSKPL-FRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVE-KLE---DD 156 (204)
Q Consensus 82 ~~i~y~~~~~~~~p~-v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~-~~~---~~ 156 (204)
++|+|+..+ +|. +++||||+.++++..++..+++++.|+ .|+.+|+.+++||+..+.+||+|+ +.. ++
T Consensus 100 ~~vv~w~~k---fP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v----~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~ 172 (219)
T KOG2761|consen 100 TEVVYWVKK---FPFPMSNRDYVYVRRWWESDEKDYYIVSKSV----QHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQ 172 (219)
T ss_pred ceEEEEEEe---CCcccCCccEEEEEEEEecCCceEEEEEecc----cCCCcCCcCCcEEEEEEEEEEEEEcccccCCCC
Confidence 999999998 776 999999999999887767777777666 899999999999999999999999 322 45
Q ss_pred ceEEEEEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHHHHhCCCC
Q 028749 157 SCMVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQACPTN 201 (204)
Q Consensus 157 ~~~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~~~~~ 201 (204)
.|.+.|..+.||+|.||.|++|++++.+.. ++++|.+.+.+++.-
T Consensus 173 ~~~~~~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~~Y~~~ 218 (219)
T KOG2761|consen 173 GCACEYLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALLAYQEK 218 (219)
T ss_pred ccEEEEEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHHhhhhc
Confidence 799999999999999999999999887655 999999999998863
No 21
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=100.00 E-value=1.1e-33 Score=223.92 Aligned_cols=176 Identities=16% Similarity=0.292 Sum_probs=149.7
Q ss_pred CCCCCcEE--cCCCeEEEEEEeeeecccCCceeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCee
Q 028749 6 PCSRSWSI--SEDSLRRYVHFAKISKRRSGSLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLS 83 (204)
Q Consensus 6 ~~~~~Wk~--~~~gv~vy~~~~~~~~~~~~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~ 83 (204)
.++++|++ +++||+||+++. .....||+++++ ++|++.++++|.|++.|++||+++.++++|++++++..
T Consensus 56 ~~~~~W~l~~~~~gI~Vyt~~~-------s~~~~fK~e~~v-d~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~~ 127 (240)
T cd08913 56 VAKDNWVLSSEKNQVRLYTLEE-------DKFLSFKVEMVV-HVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDDA 127 (240)
T ss_pred cccCCCEEEEccCCEEEEEEeC-------CCccEEEEEEEE-cCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCcE
Confidence 46789999 889999999643 336789999999 99999999999999999999999999999999998876
Q ss_pred EEEEEecCCCCCc-ccCCeeEEEEEEEEe-CCC-eEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEE
Q 028749 84 IIRLRFGEHSKPL-FRNREFIVYERRETM-EDG-TLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMV 160 (204)
Q Consensus 84 i~y~~~~~~~~p~-v~~RDfv~~~~~~~~-~~g-~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v 160 (204)
+|..+. .+.+| +++||||+++++... ++| .++++.+|+ .||.+|+.+|+|||....|||+|+|.+++.|+|
T Consensus 128 -vY~v~~-~p~~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv----~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~v 201 (240)
T cd08913 128 -IYHVTS-PSLSGHGKPQDFVILASRRKPCDNGDPYVIALRSV----TLPTHPPTPEYTRGETLCSGFCIWEESDQLTKV 201 (240)
T ss_pred -EEEEec-CCCCCCCCCCeEEEEEEEEeccCCCccEEEEEEEe----ecCCCCCCCCcEEeeecccEEEEEECCCCcEEE
Confidence 566554 33434 999999999877553 343 566667666 888999999999999999999999999999999
Q ss_pred EEEEeecCCCCccHHHHHHHHhHHHH--HHHHHHHHHH
Q 028749 161 TYVVQLDPAGWVPKCFVNRLNTKLVM--IIENLRKLAQ 196 (204)
Q Consensus 161 ~~~~~~D~~G~iP~~l~~~~~~~~~~--~~~~l~k~~~ 196 (204)
+|+.++||| .||.|++|.+....|. ++....++++
T Consensus 202 tY~~~~dPG-~LP~~~~N~~~~~~p~~~~~~~~~~~~~ 238 (240)
T cd08913 202 SYYNQATPG-VLPYISTDIAGLSSEFYSTFSACSQFLL 238 (240)
T ss_pred EEEEEeCCc-cccHHHhhhhhhccchhHHHHHHHHHhh
Confidence 999999996 9999999999988885 5666666554
No 22
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=100.00 E-value=3.2e-33 Score=218.28 Aligned_cols=183 Identities=26% Similarity=0.445 Sum_probs=155.1
Q ss_pred CCCCCcEE--cCCCeEEEEEEeeeecccC-CceeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCe
Q 028749 6 PCSRSWSI--SEDSLRRYVHFAKISKRRS-GSLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNL 82 (204)
Q Consensus 6 ~~~~~Wk~--~~~gv~vy~~~~~~~~~~~-~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~ 82 (204)
..+.+|++ ++++..+|.+.... .. .++..+|+++++ +.++++++..+.+... +||+++.++++|+++++++
T Consensus 16 ~~~~~W~~~~~~~~~~~~~~~~~~---~~~~~~~~~k~~~~v-~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~~ 89 (206)
T PF01852_consen 16 EDEDGWKLYKDKKNGDVYYKKVSP---SDSCPIKMFKAEGVV-PASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDEDT 89 (206)
T ss_dssp HTCTTCEEEEEETTTCEEEEEEEC---SSSTSCEEEEEEEEE-SSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETTE
T ss_pred cCCCCCeEeEccCCCeEEEEEeCc---cccccceEEEEEEEE-cCChHHHHHHHHhhHh--hcccchhhheeeeecCCCC
Confidence 46789999 45666666665411 02 258999999999 9999977777766554 9999999999999999999
Q ss_pred eEEEEEecCCCCCc-ccCCeeEEEEEEEEeCCCeEEEEEeccCcccccCCCCC-CCCcEEEEEEceEEEEEEcCCCceEE
Q 028749 83 SIIRLRFGEHSKPL-FRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPK-QNNSIRGLLLQSGWVVEKLEDDSCMV 160 (204)
Q Consensus 83 ~i~y~~~~~~~~p~-v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~-~~~~VR~~~~~~g~~i~~~~~~~~~v 160 (204)
.|.|+.++ .++|. +++||||+++.+...++|.++++.+|+ ++|..|+ .+|+|||+.+.+||+|+|.+++.|+|
T Consensus 90 ~i~~~~~~-~~~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si----~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~v 164 (206)
T PF01852_consen 90 DIVYFVMK-SPWPGPVSPRDFVFLRSWRKDEDGTYVIVSRSI----DHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRV 164 (206)
T ss_dssp EEEEEEEE--CTTTTSSEEEEEEEEEEEECTTSEEEEEEEEE----EBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEE
T ss_pred eEEEEEec-ccCCCCCCCcEEEEEEEEEEeccceEEEEEeee----ccccccccccCcceeeeeeEeEEEEEccCCCceE
Confidence 99999887 44522 889999999888777888999888887 8999998 89999999999999999999999999
Q ss_pred EEEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHHHHhCC
Q 028749 161 TYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQACP 199 (204)
Q Consensus 161 ~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~~~ 199 (204)
+|+.++||+|++|.|++|++.+.++. +++++++.+++..
T Consensus 165 t~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 165 TYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQK 204 (206)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999887776 9999999999875
No 23
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=100.00 E-value=2.1e-33 Score=220.84 Aligned_cols=176 Identities=13% Similarity=0.173 Sum_probs=148.8
Q ss_pred CCCCCCcEE--cCCCeEEEEEEeeeecccCCceeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCe
Q 028749 5 APCSRSWSI--SEDSLRRYVHFAKISKRRSGSLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNL 82 (204)
Q Consensus 5 ~~~~~~Wk~--~~~gv~vy~~~~~~~~~~~~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~ 82 (204)
-.++++|++ +++||+||+++. ++...||+++.+ +++++.++++|.|.+.|++||.++.++++|++++++.
T Consensus 51 l~~~~~W~l~~~k~gIkVytr~~-------s~~l~fk~e~~v-d~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~ 122 (235)
T cd08873 51 LAAKSDWTVASSTTSVTLYTLEQ-------DGVLSFCVELKV-QTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDD 122 (235)
T ss_pred ccccCCCEEEEcCCCEEEEEecC-------CCceEEEEEEEe-cCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCc
Confidence 346899999 999999999964 447889999999 9999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCCc-ccCCeeEEEEEEEE-eCC-CeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceE
Q 028749 83 SIIRLRFGEHSKPL-FRNREFIVYERRET-MED-GTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCM 159 (204)
Q Consensus 83 ~i~y~~~~~~~~p~-v~~RDfv~~~~~~~-~~~-g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~ 159 (204)
.++|+.+. +|| +++||||+++.+.. .++ +.+++..+|+ .|+.+|+.+|+|||....|||.|+|.+++.|+
T Consensus 123 ~iyy~~~p---~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV----~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~ 195 (235)
T cd08873 123 GIYHTTMP---SLTSEKPNDFVLLVSRRKPATDGDPYKVAFRSV----TLPRVPQTPGYSRTEVACAGFVIRQDCGTCTE 195 (235)
T ss_pred EEEEEEcC---CCCCCCCceEEEEEEEEeccCCCCeEEEEEeee----ecccCCCCCCeEEEEEEeeeEEEEECCCCcEE
Confidence 89998776 888 99999999987765 333 3477777777 79999999999999999999999999999999
Q ss_pred EEEEEeecCCCCccHHHHHHH-HhH-HHHHHHHHHHHHH
Q 028749 160 VTYVVQLDPAGWVPKCFVNRL-NTK-LVMIIENLRKLAQ 196 (204)
Q Consensus 160 v~~~~~~D~~G~iP~~l~~~~-~~~-~~~~~~~l~k~~~ 196 (204)
|+|+.|+|| |-+|..-.|.+ ... ...++....++++
T Consensus 196 VtY~~~~dP-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (235)
T cd08873 196 VSYYNETNP-KLLSYVTCNLAGLSALYCRTFHCCEQFLV 233 (235)
T ss_pred EEEEEEcCC-CccceeeecchhhhHHHHHHHHHHHHHhc
Confidence 999999999 55777665554 222 2225666666554
No 24
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=100.00 E-value=6.6e-33 Score=211.40 Aligned_cols=175 Identities=18% Similarity=0.298 Sum_probs=153.0
Q ss_pred CCCCCcEE--cCCCeEEEEEEeeeecccCCc-eeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCe
Q 028749 6 PCSRSWSI--SEDSLRRYVHFAKISKRRSGS-LHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNL 82 (204)
Q Consensus 6 ~~~~~Wk~--~~~gv~vy~~~~~~~~~~~~~-~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~ 82 (204)
....||.. +++++.|++++. ..+. +.++|+.+.|++.|.+-+.++|.| |+.||+++.+.++|+++++++
T Consensus 24 ek~kgW~~~~~~~~vev~~kk~-----~d~~~l~lwk~s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~~Ie~Ld~n~ 95 (205)
T cd08907 24 ERFKGWHSAPGPDNTELACKKV-----GDGHPLRLWKVSTEVEAPPSVVLQRVLRE---RHLWDEDLLHSQVIEALENNT 95 (205)
T ss_pred hccCCceeecCCCCcEEEEEeC-----CCCCceEEEEEEEEecCCCHHHHHHHhhc---hhhhhHHHHhhhhheeecCCC
Confidence 45689999 899999999987 1233 899999999988888888899998 999999999999999999999
Q ss_pred eEEEEEecCCCCCcccCCeeEEEEEEEE-eCCCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEE
Q 028749 83 SIIRLRFGEHSKPLFRNREFIVYERRET-MEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVT 161 (204)
Q Consensus 83 ~i~y~~~~~~~~p~v~~RDfv~~~~~~~-~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~ 161 (204)
+|.|+.++ ++.| +++||||+++.|.. .+.|.++|+.+|| +|+..|+.+| |||.++.+||+|+|.+.|+|+++
T Consensus 96 dI~yY~~~-~~~p-~p~RDfv~lRsW~~~l~~g~~iI~~~SV----~H~~~pp~~g-VRa~~l~sgYlIep~g~g~s~lt 168 (205)
T cd08907 96 EVYHYVTD-SMAP-HPRRDFVVLRMWRSDLPRGGCLLVSQSV----DHDNPQLEAG-VRAVLLTSQYLIEPCGMGRSRLT 168 (205)
T ss_pred EEEEEEec-CCCC-CCCceEEEEEEEccCCCCCCEEEEEecc----cCCcCCCCCC-eEEEEEeccEEEEECCCCCeEEE
Confidence 99999996 4455 99999999999853 3566788888887 8999999888 99999999999999999999999
Q ss_pred EEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHHHH
Q 028749 162 YVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQ 196 (204)
Q Consensus 162 ~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~ 196 (204)
|++++||+|++|.|. |++...+.. .+..||+-+.
T Consensus 169 yi~rvD~rG~~P~Wy-nk~~g~~~a~~l~~ir~sF~ 203 (205)
T cd08907 169 HICRADLRGRSPDWY-NKVFGHLCAMEVARIRDSFP 203 (205)
T ss_pred EEEEeCCCCCCcHHH-HHhHHHHHHHHHHHHHhhcc
Confidence 999999999999999 777666555 7888887553
No 25
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=100.00 E-value=1.9e-32 Score=211.74 Aligned_cols=173 Identities=17% Similarity=0.306 Sum_probs=150.1
Q ss_pred CCcEE--cCCCeEEEEEEeeeecccCCc-eeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEE
Q 028749 9 RSWSI--SEDSLRRYVHFAKISKRRSGS-LHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSII 85 (204)
Q Consensus 9 ~~Wk~--~~~gv~vy~~~~~~~~~~~~~-~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~ 85 (204)
.+|.. +.+++.+++++. .+++ +.++|+++.+ +.+++++++.+.+ .|++||.++.+++++++++++++|+
T Consensus 27 k~w~~~~~~~~~e~~ykK~-----~d~~~lk~~r~~~ei-~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~ 98 (205)
T cd08909 27 KGWISCSSSDNTELAYKKV-----GDGNPLRLWKVSVEV-EAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVY 98 (205)
T ss_pred cCCcccCCcCCeEEEEecC-----CCCCceEEEEEEEEe-CCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEE
Confidence 46777 778888888876 1344 8999999999 9999999887765 6999999999999999999999999
Q ss_pred EEEecCCCCCcccCCeeEEEEEEEEe-CCCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEE
Q 028749 86 RLRFGEHSKPLFRNREFIVYERRETM-EDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVV 164 (204)
Q Consensus 86 y~~~~~~~~p~v~~RDfv~~~~~~~~-~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~ 164 (204)
|+.++ ++.| +++||||++++|... ++|.++++++|| +|+.+|+. |+|||.++.+||+|+|.++|+|+|+|++
T Consensus 99 ~y~~~-~~~P-~~~RD~v~~R~w~~~~~~G~~vi~~~Sv----~H~~~p~~-g~VRa~~~~~gylI~P~~~g~trvt~i~ 171 (205)
T cd08909 99 QYVLN-CMAP-HPSRDFVVLRSWRTDLPKGACSLVSVSV----EHEEAPLL-GGVRAVVLDSQYLIEPCGSGKSRLTHIC 171 (205)
T ss_pred EEEee-cCCC-CCCCEEEEEEEEEEeCCCCcEEEEEecC----CCCcCCCC-CcEEEEEEcCcEEEEECCCCCEEEEEEE
Confidence 99997 3334 899999999998654 588999988887 89999884 9999999999999999999899999999
Q ss_pred eecCCCCccHHHHHHHHhHHHHHHHHHHHHHH
Q 028749 165 QLDPAGWVPKCFVNRLNTKLVMIIENLRKLAQ 196 (204)
Q Consensus 165 ~~D~~G~iP~~l~~~~~~~~~~~~~~l~k~~~ 196 (204)
++||+|++|.|++|.+-.-.+..+..||+-++
T Consensus 172 ~vDpkG~~P~W~~n~~g~~~~~~~~~~r~sf~ 203 (205)
T cd08909 172 RVDLKGHSPEWYNKGFGHLCAAEAARIRNSFQ 203 (205)
T ss_pred EecCCCCChHHHHHhHHHHHHHHHHHHHhhcc
Confidence 99999999999999887777767788877543
No 26
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=100.00 E-value=3.5e-32 Score=210.45 Aligned_cols=170 Identities=17% Similarity=0.327 Sum_probs=148.5
Q ss_pred CCcEE--cCCCeEEEEEEeeeecccCCc-eeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEE
Q 028749 9 RSWSI--SEDSLRRYVHFAKISKRRSGS-LHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSII 85 (204)
Q Consensus 9 ~~Wk~--~~~gv~vy~~~~~~~~~~~~~-~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~ 85 (204)
.||.. ..+++.+..++. .+++ +..+|+++.| +++++++++.+.|. |++||.++.++++|++++++++|+
T Consensus 27 k~w~~~~~~~~~el~~~k~-----~~gs~l~~~r~~~~i-~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~ 98 (204)
T cd08908 27 KGWVSYSTSEQAELSYKKV-----SEGPPLRLWRTTIEV-PAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIY 98 (204)
T ss_pred cCCcccCCCCcEEEEEecc-----CCCCCcEEEEEEEEe-CCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCceEE
Confidence 46766 778888888866 2444 8999999999 99999999999877 999999999999999999999999
Q ss_pred EEEecCCCCCc-ccCCeeEEEEEEEE-eCCCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEE
Q 028749 86 RLRFGEHSKPL-FRNREFIVYERRET-MEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYV 163 (204)
Q Consensus 86 y~~~~~~~~p~-v~~RDfv~~~~~~~-~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~ 163 (204)
|++++ .|| +++||||+++.+.. .++|.+++...|+ +|+.+|+. +|||..+.++|.|+|.++|+|+|+|+
T Consensus 99 Yy~~~---~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv----~h~~~P~~--~VR~~~~~~~w~i~P~g~g~t~vtyi 169 (204)
T cd08908 99 QYVQN---SMAPHPARDYVVLRTWRTNLPKGACALLATSV----DHDRAPVA--GVRVNVLLSRYLIEPCGSGKSKLTYM 169 (204)
T ss_pred EEEcc---CCCCCCCcEEEEEEEEEEeCCCCeEEEEEeec----CcccCCcC--ceEEEEEeeEEEEEECCCCcEEEEEE
Confidence 99987 677 99999999977643 5778888888776 88999865 79999999999999999999999999
Q ss_pred EeecCCCCccHHHHHHHHhHHHHHHHHHHHHH
Q 028749 164 VQLDPAGWVPKCFVNRLNTKLVMIIENLRKLA 195 (204)
Q Consensus 164 ~~~D~~G~iP~~l~~~~~~~~~~~~~~l~k~~ 195 (204)
+++||+|.||.|++|.+-.-.+..+.+||+-+
T Consensus 170 ~~~DPgG~iP~W~~N~~g~~~~~~~~~~r~sf 201 (204)
T cd08908 170 CRIDLRGHMPEWYTKSFGHLCAAEVVKIRDSF 201 (204)
T ss_pred EEeCCCCCCcHHHHhhHHHHHHHHHHHHHhhc
Confidence 99999999999999998777777778888755
No 27
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=99.97 E-value=2e-29 Score=220.64 Aligned_cols=193 Identities=15% Similarity=0.258 Sum_probs=162.5
Q ss_pred CCCCCCCCcEE--cCCCeEEEEEEeeeecc-cCCceeEEEEEEEEecCCHHHHHHHHhccc-ccccchhhccceeeeeee
Q 028749 3 SPAPCSRSWSI--SEDSLRRYVHFAKISKR-RSGSLHTFRSRWLLKSVSPQQFITVANAID-AAKQWDSDLVEAKYIKDL 78 (204)
Q Consensus 3 ~~~~~~~~Wk~--~~~gv~vy~~~~~~~~~-~~~~~~~~k~~~~i~~~~~~~v~~~l~d~~-~r~~wd~~~~~~~~l~~~ 78 (204)
+-+.+...|++ +.+|+++|..... ++. ..+....+|++++| +++++++|+++++.+ .|.+||..+.++++|+++
T Consensus 192 ~d~~~~~~Wr~~~c~NGlRiF~e~~~-~~~~~~~~~~~mKavGVV-~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~I 269 (719)
T PLN00188 192 NQAFSRKHWRLLQCQNGLRIFEELLE-VDYLPRSCSRAMKAVGVV-EATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEV 269 (719)
T ss_pred ccccccCCeEEEEeeccceeehhhhc-cccccccCCceeEEEEEe-cCCHHHHHHHHhccCcccccchhcccceEEEEEe
Confidence 44567889999 9999999988652 110 01225899999999 999999999998766 899999999999999999
Q ss_pred cCCeeEEEEEecCCCCCc-ccCCeeEEEEEEEEeCCCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcC--C
Q 028749 79 EDNLSIIRLRFGEHSKPL-FRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLE--D 155 (204)
Q Consensus 79 ~~~~~i~y~~~~~~~~p~-v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~--~ 155 (204)
++++.|+|.+++...+|+ +++||||.+++|...++|.|+++..|+ .||.+|+.+|+|||+++.|||+|.|+. +
T Consensus 270 D~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv----~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~ 345 (719)
T PLN00188 270 DGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSR----EHENCGPQPGFVRAHLESGGFNISPLKPRN 345 (719)
T ss_pred cCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeee----ecCCCCCCCCeEEEEEeCCEEEEEECCCCC
Confidence 999999999887444555 999999999999999999999988777 999999999999999999999999976 2
Q ss_pred --CceEEEEEEeecCCCCccHHHHHHH---HhHHHHHHHHHHHHHHhCCCC
Q 028749 156 --DSCMVTYVVQLDPAGWVPKCFVNRL---NTKLVMIIENLRKLAQACPTN 201 (204)
Q Consensus 156 --~~~~v~~~~~~D~~G~iP~~l~~~~---~~~~~~~~~~l~k~~~~~~~~ 201 (204)
..|.|++++++|++||+|.+....- .-.+.-.+..||+++.+.|++
T Consensus 346 g~~r~lv~~~lqtDlkGW~~~y~~s~~~~~~l~mL~~VAgLrE~~~~~~~~ 396 (719)
T PLN00188 346 GRPRTQVQHLMQIDLKGWGVGYIPSFQQHCLLQMLNSVAGLREWFSQTDER 396 (719)
T ss_pred CCCceEEEEEEEEccCccccccCccccccchHHHHHHHHHHHHHHhcCccc
Confidence 4899999999999999998876432 112222788999999999854
No 28
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.75 E-value=6.3e-17 Score=126.58 Aligned_cols=154 Identities=16% Similarity=0.232 Sum_probs=128.8
Q ss_pred eeEEEEEEEEecCCHHHHHHHHhccccccc-chhhccceeeeeeecCC--------eeEEEEEecCCCCCcccCCeeEEE
Q 028749 35 LHTFRSRWLLKSVSPQQFITVANAIDAAKQ-WDSDLVEAKYIKDLEDN--------LSIIRLRFGEHSKPLFRNREFIVY 105 (204)
Q Consensus 35 ~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~-wd~~~~~~~~l~~~~~~--------~~i~y~~~~~~~~p~v~~RDfv~~ 105 (204)
.-.-|..+.+ ..++..+.++|+|.....+ ++..|..+.+++.++.+ ..+.|..++ .++|++.+|||+++
T Consensus 59 ~eASR~~glV-~m~~~~lVe~lmD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~-~pSpLVp~Re~~fL 136 (229)
T cd08875 59 TEASRACGLV-MMNAIKLVEILMDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQ-VPSPLVPTREFYFL 136 (229)
T ss_pred EEEEeeeEEE-ecCHHHHHHHHhChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcc-cCcccccCCeEEEE
Confidence 5677899999 9999999999999877766 67789999999998765 568899986 66788999999999
Q ss_pred EEEEEeCCCeEEEEEeccCcccccC-CCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCC----CCccHHHHHHH
Q 028749 106 ERRETMEDGTLVVAVASLPKEIAAG-LHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPA----GWVPKCFVNRL 180 (204)
Q Consensus 106 ~~~~~~~~g~~~i~~~Sv~~s~~~~-~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~----G~iP~~l~~~~ 180 (204)
|+..+.++|.++|+..|+ ++. ..|..++++|++.+.|||+|++.++|.|+|+++-|+|.. ..+|..+++..
T Consensus 137 Ryc~~l~dG~w~VvdvSl----d~~~~~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg 212 (229)
T cd08875 137 RYCKQLEDGLWAVVDVSI----DGVQTAPPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSG 212 (229)
T ss_pred EEEEEeCCCeEEEEEEee----cccccCCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhh
Confidence 999899999999998888 443 567778999999999999999999999999999999966 45777888777
Q ss_pred HhHHHH-HHHHHHHH
Q 028749 181 NTKLVM-IIENLRKL 194 (204)
Q Consensus 181 ~~~~~~-~~~~l~k~ 194 (204)
....+. .+..|+++
T Consensus 213 ~AfgA~rw~a~lqRq 227 (229)
T cd08875 213 LAFGATRWVATLQRQ 227 (229)
T ss_pred HHHHHHHHHHHHHHh
Confidence 554443 55555554
No 29
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.74 E-value=1.3e-17 Score=139.69 Aligned_cols=183 Identities=18% Similarity=0.349 Sum_probs=146.4
Q ss_pred CCCCCCcEE--cCCCeEEEEEEeeeecccCCc-eeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCC
Q 028749 5 APCSRSWSI--SEDSLRRYVHFAKISKRRSGS-LHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDN 81 (204)
Q Consensus 5 ~~~~~~Wk~--~~~gv~vy~~~~~~~~~~~~~-~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~ 81 (204)
...+..|++ ++..+++|.|..+. +|. +-.+|+.-.+..++..+|+..+.|++.|..|+..+..+.+++.++++
T Consensus 399 ~g~d~nwqlFaeegemkmy~re~ee----ng~~~Dplka~hav~gvta~e~chyf~~~~~rndwettle~~~vve~is~d 474 (611)
T KOG1739|consen 399 VGGDANWQLFAEEGEMKMYRREVEE----NGIVLDPLKATHAVKGVTAHEVCHYFWNVDVRNDWETTLENFHVVETISDD 474 (611)
T ss_pred ccccchhhhhcccCCccccceeecc----CCcccCccccchhhcchhHHHHHHHHcChhhhcchhhhhhhceeeeeecCC
Confidence 345667999 99999999998831 333 55678887777999999999999999999999999999999999999
Q ss_pred eeEEEEEecCCCCCc-ccCCeeEEEEEEEE----eCCC--eEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcC
Q 028749 82 LSIIRLRFGEHSKPL-FRNREFIVYERRET----MEDG--TLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLE 154 (204)
Q Consensus 82 ~~i~y~~~~~~~~p~-v~~RDfv~~~~~~~----~~~g--~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~ 154 (204)
+-|+|+..| --| .++||.+++.+..+ .++| .++++.+|+ ++...|-.+.+||+..-.+-.+=+-++
T Consensus 475 ~~~~~qthk---rvwpasqrd~lf~shirki~~~~e~gad~wivcn~s~----~~a~~pl~n~cvr~~ltv~micqt~v~ 547 (611)
T KOG1739|consen 475 AIIIYQTHK---RVWPASQRDVLFLSHIRKIPALTENGADTWIVCNFSV----DHASAPLNNRCVRAKLTVAMICQTLVS 547 (611)
T ss_pred eEEEEeccc---ccCCCCcchhHHHHHHhhcccccCCCCceEEEecCcc----ccccCccCCceEEEeeeeeeeeecccC
Confidence 999999888 446 99999987754322 1333 677777776 888999888999998765533322222
Q ss_pred -----------CCceEEEEEEeecCCCCccHHHHHHHHh-HHHHHHHHHHHHHHhC
Q 028749 155 -----------DDSCMVTYVVQLDPAGWVPKCFVNRLNT-KLVMIIENLRKLAQAC 198 (204)
Q Consensus 155 -----------~~~~~v~~~~~~D~~G~iP~~l~~~~~~-~~~~~~~~l~k~~~~~ 198 (204)
+-.|+|+|+++++||||.|...++.+.+ .-|.|++.+-.++.+.
T Consensus 548 ~p~~~q~l~rdd~~ckityvs~vnpggwapasalravykreypkflkrft~yv~~~ 603 (611)
T KOG1739|consen 548 PPEGNQELSRDDILCKITYVSNVNPGGWAPASALRAVYKREYPKFLKRFTSYVQEK 603 (611)
T ss_pred CcccCCcccccceeEEEEEEeeeCCCCcccHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 1279999999999999999999999965 6787888888777654
No 30
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.70 E-value=1.5e-15 Score=118.49 Aligned_cols=115 Identities=12% Similarity=0.169 Sum_probs=87.2
Q ss_pred ccccccchhhcc--ceeeeeeecCCe----eEEEEEecCCCCCc-ccCCeeEEEEE-EEEeCC-CeEEEEEeccCccccc
Q 028749 59 IDAAKQWDSDLV--EAKYIKDLEDNL----SIIRLRFGEHSKPL-FRNREFIVYER-RETMED-GTLVVAVASLPKEIAA 129 (204)
Q Consensus 59 ~~~r~~wd~~~~--~~~~l~~~~~~~----~i~y~~~~~~~~p~-v~~RDfv~~~~-~~~~~~-g~~~i~~~Sv~~s~~~ 129 (204)
.++-++|.+.+. ++++|+..++.. .++|+.++ +|| +++|||+.+.. ....+. ...++++.++ ++
T Consensus 62 ~~~E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~---~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~----~~ 134 (208)
T cd08864 62 TEYEKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYK---FPFPLSPRVFNELVHIKSDLDPASEFMVVSLPI----TP 134 (208)
T ss_pred HhhhhhchhhhccceeEEeeecCCCccceEEEEEEEEE---CCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEe----cC
Confidence 566789999999 899999987666 88999998 888 99999998876 333331 3444444444 78
Q ss_pred CCCC-CCCCcEEEEEEceEEEEE--EcC-CCc--eEEEEEEeecCCCCccHHHHHHHH
Q 028749 130 GLHP-KQNNSIRGLLLQSGWVVE--KLE-DDS--CMVTYVVQLDPAGWVPKCFVNRLN 181 (204)
Q Consensus 130 ~~~P-~~~~~VR~~~~~~g~~i~--~~~-~~~--~~v~~~~~~D~~G~iP~~l~~~~~ 181 (204)
+.+| +.+++|||. +.+|..++ |.+ ++. +..+|+.+.||||+||.|++|++.
T Consensus 135 ~~~p~~~~~~Vr~~-y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~wl~n~~~ 191 (208)
T cd08864 135 PLVESLYENAVLGR-YASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPRWLTKLTI 191 (208)
T ss_pred CcCCccCCCcEEEE-EEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcHHHHhccC
Confidence 8899 889999999 66774544 544 334 455555599999999999999974
No 31
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.61 E-value=2.1e-14 Score=105.04 Aligned_cols=135 Identities=10% Similarity=0.166 Sum_probs=106.1
Q ss_pred EEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCCeEEE
Q 028749 39 RSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVV 118 (204)
Q Consensus 39 k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~~i 118 (204)
+.+..| ++|++.+++++.|.+.+++|.+.|.+++++++.+ +....++..+ .| ...|+|+..... ..++.+
T Consensus 2 ~~s~~i-~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~-~~~~~~~~~~---~~-~~~~~~~~~~~~--~~~~~i-- 71 (138)
T cd07813 2 SKSRLV-PYSAEQMFDLVADVERYPEFLPWCTASRVLERDE-DELEAELTVG---FG-GIRESFTSRVTL--VPPESI-- 71 (138)
T ss_pred eEEEEc-CCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCC-CEEEEEEEEe---ec-cccEEEEEEEEe--cCCCEE--
Confidence 456788 9999999999999999999999999999999844 5555666554 44 557888865543 223333
Q ss_pred EEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHHHHh
Q 028749 119 AVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQA 197 (204)
Q Consensus 119 ~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~ 197 (204)
...++ .. +...+.+.|.|+|.++++|+|+|..+.+|+|.+|.+|++.++...+. .++.+++.+++
T Consensus 72 ~~~~~----~g----------~~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 72 EAELV----DG----------PFKHLEGEWRFKPLGENACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred EEEec----CC----------ChhhceeEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 23333 11 12335689999999988899999999999999999999999999998 89999988875
No 32
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.43 E-value=1.8e-11 Score=89.91 Aligned_cols=138 Identities=17% Similarity=0.266 Sum_probs=94.6
Q ss_pred EEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCc--ccCCeeEEEEEEEEeCC-Ce
Q 028749 39 RSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPL--FRNREFIVYERRETMED-GT 115 (204)
Q Consensus 39 k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~--v~~RDfv~~~~~~~~~~-g~ 115 (204)
+++..| ++|++.|++++.|.+.+++|.+.|.++++++. .++....++... ... ..-+.-+... ....++ +.
T Consensus 2 ~~~~~i-~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~-~~~~~~~~~~~~---~~~~~~~~~~~v~~~-~~~~~~~~~ 75 (144)
T cd08866 2 VARVRV-PAPPETVWAVLTDYDNLAEFIPNLAESRLLER-NGNRVVLEQTGK---QGILFFKFEARVVLE-LREREEFPR 75 (144)
T ss_pred eEEEEE-CCCHHHHHHHHhChhhHHhhCcCceEEEEEEc-CCCEEEEEEeee---EEEEeeeeeEEEEEE-EEEecCCCc
Confidence 578899 99999999999999999999999999999987 333333333211 110 0001111111 111111 12
Q ss_pred EEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCC-CceEEEEEEeecCCCCccHHHHHHHHhHHHH-HHHHHHH
Q 028749 116 LVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLED-DSCMVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRK 193 (204)
Q Consensus 116 ~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~-~~~~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k 193 (204)
.+.. +.+ . |-+ ..+.+.|.|+|.++ ++|+++|..+++|++.+|.+++|.+....+. .+++||+
T Consensus 76 ~i~~-~~~----~--------g~~--~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~ 140 (144)
T cd08866 76 ELDF-EMV----E--------GDF--KRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRA 140 (144)
T ss_pred eEEE-EEc----C--------Cch--hceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 111 1 111 24578999999997 7899999999999999999999999988887 9999999
Q ss_pred HHHh
Q 028749 194 LAQA 197 (204)
Q Consensus 194 ~~~~ 197 (204)
.+++
T Consensus 141 ~ae~ 144 (144)
T cd08866 141 EAES 144 (144)
T ss_pred HHhC
Confidence 8874
No 33
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=99.27 E-value=5.7e-10 Score=85.49 Aligned_cols=127 Identities=15% Similarity=0.247 Sum_probs=98.6
Q ss_pred cCCHHHHHHHHh--cccccccchhhccceeeeeee----------cCCeeEEEEEecCCCCCc-ccCCeeEEEEEEEEeC
Q 028749 46 SVSPQQFITVAN--AIDAAKQWDSDLVEAKYIKDL----------EDNLSIIRLRFGEHSKPL-FRNREFIVYERRETME 112 (204)
Q Consensus 46 ~~~~~~v~~~l~--d~~~r~~wd~~~~~~~~l~~~----------~~~~~i~y~~~~~~~~p~-v~~RDfv~~~~~~~~~ 112 (204)
.++.+++...|. ..+.-+.+.+.+...+.++.. +....+..+.++ +|+ +++|+|+.+.-.....
T Consensus 13 ~~~~~~~~~~L~~~h~e~E~~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~k---fp~pl~~R~F~~Lvit~~~~ 89 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSENEKEYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSYK---FPGPLSPRVFVVLVITADLP 89 (184)
T ss_pred CCCHHHHHHHHHhhhHHHHHHhccccceEEEEEEeccccCCcccccceEEEEEEEeE---CCCCCCCcEEEEEEEEeccC
Confidence 578888887775 367778899999999999998 234567777776 676 9999999886543333
Q ss_pred ---------CCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEc-------CCCceEEEEEEeecCCCCccHHH
Q 028749 113 ---------DGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKL-------EDDSCMVTYVVQLDPAGWVPKCF 176 (204)
Q Consensus 113 ---------~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~-------~~~~~~v~~~~~~D~~G~iP~~l 176 (204)
....++++ +| ++++..|+.+++|||. |.|-=.|+.+ +++..+-+|+...|+||+||.|+
T Consensus 90 ~~~~~~~~~~~~f~vVs--~P--~~~~~~~~~~~~V~g~-Y~SVE~ire~p~~~~~~~~~~veW~MaT~SdaGG~IP~w~ 164 (184)
T PF11274_consen 90 SKTEDDSTGPREFMVVS--IP--VDHPDSPPRKGYVRGQ-YESVERIRELPDTKDDDEEGPVEWIMATRSDAGGSIPRWM 164 (184)
T ss_pred ccccCCCCCCCeEEEEE--EE--cCCcccCCCCCCEEEE-EEEEEEEEEccCCCCCCCCCcEEEEEEEeeCCCCcccHHH
Confidence 23455554 44 3678888999999998 6777777777 35689999999999999999999
Q ss_pred HHHH
Q 028749 177 VNRL 180 (204)
Q Consensus 177 ~~~~ 180 (204)
+++.
T Consensus 165 q~~~ 168 (184)
T PF11274_consen 165 QEMG 168 (184)
T ss_pred Hhcc
Confidence 9985
No 34
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.27 E-value=6.8e-10 Score=80.71 Aligned_cols=136 Identities=10% Similarity=0.219 Sum_probs=95.2
Q ss_pred EEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCe-eEEEEEecCCCCCcccCCeeEEEEEEEEeCCCe
Q 028749 37 TFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNL-SIIRLRFGEHSKPLFRNREFIVYERRETMEDGT 115 (204)
Q Consensus 37 ~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~-~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~ 115 (204)
.+.....| ++|+++|++++.|++..++|.+.|.++++++..+... ...+.... ..+ ++. +|+..... .++..
T Consensus 3 ~v~~s~~i-~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~-~~~~~~~~--~~~~~ 75 (140)
T cd07819 3 KVSREFEI-EAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVG--AYG-IKD-TYALEYTW--DGAGS 75 (140)
T ss_pred eEEEEEEE-eCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEe--eee-EEE-EEEEEEEE--cCCCc
Confidence 35667889 9999999999999999999999999999987643332 23344332 112 332 44422222 22222
Q ss_pred EEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHH
Q 028749 116 LVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKL 194 (204)
Q Consensus 116 ~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~ 194 (204)
+. .+.+ ..+ +...+.+.|.|+|.++ +|+|+|..+.++++.+|.++++.+.+..+. ++++|+++
T Consensus 76 i~--~~~~----~~~---------~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (140)
T cd07819 76 VS--WTLV----EGE---------GNRSQEGSYTLTPKGD-GTRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKR 139 (140)
T ss_pred EE--EEEe----ccc---------ceeEEEEEEEEEECCC-CEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhh
Confidence 21 2222 111 2234457899999988 599999999999999999999999888887 89999886
Q ss_pred H
Q 028749 195 A 195 (204)
Q Consensus 195 ~ 195 (204)
+
T Consensus 140 ~ 140 (140)
T cd07819 140 V 140 (140)
T ss_pred C
Confidence 4
No 35
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.21 E-value=8.1e-10 Score=80.67 Aligned_cols=137 Identities=12% Similarity=0.123 Sum_probs=95.2
Q ss_pred EEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCC-Ce
Q 028749 37 TFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMED-GT 115 (204)
Q Consensus 37 ~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~-g~ 115 (204)
.++.+..+ ++|++++++++.|++...+|.+.+.+.+++. ++....+...+ . .| .+.| +.........+. ..
T Consensus 2 ~~~~~~~i-~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~---~~~~~~~~~~~-~-~~-~~~~-~~~~~~~~~~~~~~~ 73 (144)
T cd05018 2 KISGEFRI-PAPPEEVWAALNDPEVLARCIPGCESLEKIG---PNEYEATVKLK-V-GP-VKGT-FKGKVELSDLDPPES 73 (144)
T ss_pred eeeeEEEe-cCCHHHHHHHhcCHHHHHhhccchhhccccC---CCeEEEEEEEE-E-cc-EEEE-EEEEEEEEecCCCcE
Confidence 46788899 9999999999999999999999999877664 34444555554 1 23 4333 322333322333 33
Q ss_pred EEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCc---cHHHHHHHHhHHHH-HHHHH
Q 028749 116 LVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWV---PKCFVNRLNTKLVM-IIENL 191 (204)
Q Consensus 116 ~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~i---P~~l~~~~~~~~~~-~~~~l 191 (204)
+.+.... ..+ .+.....+.|.|+|. +++|+|+|..+++++|.+ |.++++.++++++. ++++|
T Consensus 74 ~~~~~~~-----~~~--------~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l 139 (144)
T cd05018 74 YTITGEG-----KGG--------AGFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENL 139 (144)
T ss_pred EEEEEEE-----cCC--------CceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHH
Confidence 3332110 011 111235678999998 566999999999999876 99999999998887 99999
Q ss_pred HHHH
Q 028749 192 RKLA 195 (204)
Q Consensus 192 ~k~~ 195 (204)
++.+
T Consensus 140 ~~~~ 143 (144)
T cd05018 140 ASKI 143 (144)
T ss_pred HHhh
Confidence 9876
No 36
>PRK10724 hypothetical protein; Provisional
Probab=99.21 E-value=1.5e-09 Score=81.30 Aligned_cols=142 Identities=11% Similarity=0.238 Sum_probs=105.0
Q ss_pred eeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCC
Q 028749 35 LHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDG 114 (204)
Q Consensus 35 ~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g 114 (204)
...++.+.++ ++|++++++++.|++.+++|-|.|.+++++++- ++..+..+... -.+ + ...|...... .+++
T Consensus 14 M~~i~~~~~v-~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~-~~~~~a~l~v~--~~g-~-~~~f~srv~~--~~~~ 85 (158)
T PRK10724 14 MPQISRTALV-PYSAEQMYQLVNDVQSYPQFLPGCTGSRVLEST-PGQMTAAVDVS--KAG-I-SKTFTTRNQL--TSNQ 85 (158)
T ss_pred CCeEEEEEEe-cCCHHHHHHHHHHHHHHHHhCcccCeEEEEEec-CCEEEEEEEEe--eCC-c-cEEEEEEEEe--cCCC
Confidence 5678889999 999999999999999999999999999999994 44333333332 012 2 2455544333 2333
Q ss_pred eEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccHHHHHHHHhHHHH-HHHHHHH
Q 028749 115 TLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRK 193 (204)
Q Consensus 115 ~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k 193 (204)
.+.+ ..+ +. | . +.+.+.|.|+|.++++|+|++....+++-.++..+++.+...... .++.+++
T Consensus 86 ~I~~--~~~----~G---p-----F--~~l~g~W~f~p~~~~~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~ 149 (158)
T PRK10724 86 SILM--QLV----DG---P-----F--KKLIGGWKFTPLSQEACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTV 149 (158)
T ss_pred EEEE--Eec----CC---C-----h--hhccceEEEEECCCCCEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 222 22 2 1 246799999999987899999999999999999999999988887 7888888
Q ss_pred HHHhCCC
Q 028749 194 LAQACPT 200 (204)
Q Consensus 194 ~~~~~~~ 200 (204)
.+++.-+
T Consensus 150 Ra~~~yg 156 (158)
T PRK10724 150 RAKEVYS 156 (158)
T ss_pred HHHHHhC
Confidence 8876543
No 37
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.01 E-value=6.7e-08 Score=71.52 Aligned_cols=136 Identities=11% Similarity=0.132 Sum_probs=88.0
Q ss_pred EEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccC--CeeEEEEEEEEeCCCeE
Q 028749 39 RSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRN--REFIVYERRETMEDGTL 116 (204)
Q Consensus 39 k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~--RDfv~~~~~~~~~~g~~ 116 (204)
..+.+| ++|++.|++++.|++.+++|.+.|.++++++. ++......+... .+ ..+ ..|.. +....+.+..
T Consensus 4 ~~si~i-~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~-~~~~~~~r~~i~---~~-~~g~~~~w~s--~~~~~~~~~~ 75 (146)
T cd08860 4 DNSIVI-DAPLDLVWDMTNDIATWPDLFSEYAEAEVLEE-DGDTVRFRLTMH---PD-ANGTVWSWVS--ERTLDPVNRT 75 (146)
T ss_pred eeEEEE-cCCHHHHHHHHHhhhhhhhhccceEEEEEEEe-cCCeEEEEEEEE---ec-cCCEEEEEEE--EEEecCCCcE
Confidence 346788 99999999999999999999999999999997 444333333222 11 111 22221 1112223333
Q ss_pred EEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCC--CccHHHHHHHHh-HHHHHHHHHHH
Q 028749 117 VVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAG--WVPKCFVNRLNT-KLVMIIENLRK 193 (204)
Q Consensus 117 ~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G--~iP~~l~~~~~~-~~~~~~~~l~k 193 (204)
+. ++.. +..|. ....+.|.|+|++++ |+|++.....+.+ .++..++..... .....+++||+
T Consensus 76 i~-~~~~------~~~p~-------~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~ 140 (146)
T cd08860 76 VR-ARRV------ETGPF-------AYMNIRWEYTEVPEG-TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKK 140 (146)
T ss_pred EE-EEEe------cCCCc-------ceeeeeEEEEECCCC-EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHH
Confidence 32 2222 11121 234688999999876 9999999888774 444545555544 45569999999
Q ss_pred HHHh
Q 028749 194 LAQA 197 (204)
Q Consensus 194 ~~~~ 197 (204)
++++
T Consensus 141 ~aE~ 144 (146)
T cd08860 141 KIEA 144 (146)
T ss_pred Hhhh
Confidence 9886
No 38
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=98.98 E-value=6.5e-08 Score=69.95 Aligned_cols=137 Identities=9% Similarity=0.083 Sum_probs=93.2
Q ss_pred EEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCC-e
Q 028749 37 TFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDG-T 115 (204)
Q Consensus 37 ~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g-~ 115 (204)
.++.+.+| ++|+++|++++.|++.++.|.+.+.+.+++..-+.........+. .+ +.+ ..+....+++ .
T Consensus 2 ~i~~~~~i-~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~---~g----~~~--~~~i~~~~~~~~ 71 (140)
T cd07821 2 KVTVSVTI-DAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLK---DG----GTV--RERLLALDDAER 71 (140)
T ss_pred cEEEEEEE-CCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeC---CC----CEE--EEEehhcCccCC
Confidence 36778899 999999999999999999999999988887753211222223222 11 222 2222222333 3
Q ss_pred EEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHH
Q 028749 116 LVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKL 194 (204)
Q Consensus 116 ~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~ 194 (204)
.+.. ... .. ..| ...+.+.|.|+|.++++|+|++....++.|.+|.++++.+...... .+++|+++
T Consensus 72 ~i~~-~~~----~~-~~~-------~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 138 (140)
T cd07821 72 RYSY-RIV----EG-PLP-------VKNYVATIRVTPEGDGGTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAA 138 (140)
T ss_pred EEEE-Eec----CC-CCC-------cccceEEEEEEECCCCccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 3222 111 11 111 1234578999999987899999999999988999999999888776 89999887
Q ss_pred HH
Q 028749 195 AQ 196 (204)
Q Consensus 195 ~~ 196 (204)
++
T Consensus 139 ~~ 140 (140)
T cd07821 139 LE 140 (140)
T ss_pred hC
Confidence 63
No 39
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.93 E-value=7.7e-08 Score=69.25 Aligned_cols=124 Identities=15% Similarity=0.222 Sum_probs=86.6
Q ss_pred cCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCCeEEEEEeccCc
Q 028749 46 SVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASLPK 125 (204)
Q Consensus 46 ~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~ 125 (204)
++|+++|++++.|.+.+++|.+.+.++++|++-++ ......... .. ...+.|...... . ..+.+. ...+
T Consensus 2 ~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~-~~~~~~~~~---~~-~~~~~~~~~~~~-~-~~~~~~--~~~~-- 70 (130)
T PF03364_consen 2 NAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGD-GMRARWEVK---FG-GIKRSWTSRVTE-D-PPERIR--FEQI-- 70 (130)
T ss_dssp SS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECC-EEEEEEEEC---TT-TTCEEEEEEEEE-E-CTTTEE--EESS--
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC-eEEEEEEEe---cC-CEEEEEEEEEEE-E-Eeeeee--eeec--
Confidence 79999999999999999999999999999999544 333344333 21 333566543333 2 222321 1111
Q ss_pred ccccCCCCCCCCcEEEEEEceEEEEEEcCC----CceEEEEEEeecCCCCccHHHHHHHHhHHHH-HHHHHH
Q 028749 126 EIAAGLHPKQNNSIRGLLLQSGWVVEKLED----DSCMVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLR 192 (204)
Q Consensus 126 s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~----~~~~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~ 192 (204)
.|-. ..+.+.|.+++.++ ..|++++....+|++.+|.++++.+...... .+++||
T Consensus 71 ----------~g~~--~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 71 ----------SGPF--KSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp ----------ETTE--EEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCc--hhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 1111 35679999999995 4689999999999999999999999877765 666554
No 40
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.88 E-value=1.7e-07 Score=67.89 Aligned_cols=132 Identities=8% Similarity=0.064 Sum_probs=88.0
Q ss_pred EEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCCeEE
Q 028749 38 FRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLV 117 (204)
Q Consensus 38 ~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~~ 117 (204)
+..+..| ++|++.|++++.|++..++|.+.+.+.+++.. .. ..+..+ .|+...++|.... ...+.+..+
T Consensus 2 v~~~i~I-~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~--~~---~~~~~~---~~~g~~~~~~~~v--~~~~~~~~i 70 (139)
T cd07817 2 VEKSITV-NVPVEEVYDFWRDFENLPRFMSHVESVEQLDD--TR---SHWKAK---GPAGLSVEWDAEI--TEQVPNERI 70 (139)
T ss_pred eeEEEEe-CCCHHHHHHHHhChhhhHHHhhhhcEEEEcCC--Cc---eEEEEe---cCCCCcEEEEEEE--eccCCCCEE
Confidence 4567889 99999999999999999999999999887754 11 122223 4444445665432 223344433
Q ss_pred EEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccHHH----HHHHHhHHHH-HHHHHH
Q 028749 118 VAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCF----VNRLNTKLVM-IIENLR 192 (204)
Q Consensus 118 i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~l----~~~~~~~~~~-~~~~l~ 192 (204)
.. .+. ..+ + ...+-|.|++.++++|+++|..+.++.+.++..+ .+.+.++... .+++|+
T Consensus 71 ~~-~~~----~~~-------~----~~~~~~~f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk 134 (139)
T cd07817 71 AW-RSV----EGA-------D----PNAGSVRFRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFK 134 (139)
T ss_pred EE-EEC----CCC-------C----CcceEEEEEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHH
Confidence 22 121 111 0 1246677899887789999999999998777644 4455555555 888888
Q ss_pred HHHH
Q 028749 193 KLAQ 196 (204)
Q Consensus 193 k~~~ 196 (204)
+.++
T Consensus 135 ~~aE 138 (139)
T cd07817 135 QLVE 138 (139)
T ss_pred HHhh
Confidence 8775
No 41
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.85 E-value=5.5e-08 Score=70.45 Aligned_cols=139 Identities=15% Similarity=0.296 Sum_probs=98.8
Q ss_pred EEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCCeE
Q 028749 37 TFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTL 116 (204)
Q Consensus 37 ~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~ 116 (204)
.+.....+ +.+++++|+++.|++.|+++-|.|..++++++ ++...+.-+... . .. ++ -.|.+... ...+..
T Consensus 3 ~~~~s~lv-~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~-~~~~l~A~l~V~-~-k~-i~-e~F~Trv~---~~~~~~ 73 (146)
T COG2867 3 QIERTALV-PYSASQMFDLVNDVESYPEFLPWCSASRVLER-NERELIAELDVG-F-KG-IR-ETFTTRVT---LKPTAR 73 (146)
T ss_pred eeEeeeec-cCCHHHHHHHHHHHHhCchhccccccceEecc-CcceeEEEEEEE-h-hh-ee-eeeeeeee---ecCchh
Confidence 45667788 99999999999999999999999999999999 565544433322 0 11 22 23332222 222222
Q ss_pred EEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHHH
Q 028749 117 VVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLA 195 (204)
Q Consensus 117 ~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~ 195 (204)
.|....+ +.| . +.+.++|.|+|++++.|+|.+....+++..|-..+...+...... +++...+++
T Consensus 74 ~I~~~l~----~GP---F-------k~L~~~W~F~pl~~~~ckV~f~ldfeF~s~ll~~~~g~~f~~~a~~mv~aF~kRA 139 (146)
T COG2867 74 SIDMKLI----DGP---F-------KYLKGGWQFTPLSEDACKVEFFLDFEFKSRLLGALIGPVFKRLASKMVEAFEKRA 139 (146)
T ss_pred hhhhhhh----cCC---h-------hhhcCceEEEECCCCceEEEEEEEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2322122 222 2 346899999999988999999999999999988888888877776 788888877
Q ss_pred HhC
Q 028749 196 QAC 198 (204)
Q Consensus 196 ~~~ 198 (204)
+..
T Consensus 140 ~~~ 142 (146)
T COG2867 140 KEV 142 (146)
T ss_pred HHh
Confidence 653
No 42
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=98.75 E-value=7.3e-07 Score=65.03 Aligned_cols=134 Identities=12% Similarity=0.109 Sum_probs=84.5
Q ss_pred EEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEE--EEEEEeCCCeEE
Q 028749 40 SRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVY--ERRETMEDGTLV 117 (204)
Q Consensus 40 ~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~--~~~~~~~~g~~~ 117 (204)
.+.+| ++|++.|++++.|++.+++|.+. ...++++. .++...++. +. +..+..... ......+++..+
T Consensus 3 ~s~~i-~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~-~~~~~~~~~-~~------~~~~g~~~~~~~~~~~~~~~~~i 72 (142)
T cd08861 3 HSVTV-AAPAEDVYDLLADAERWPEFLPT-VHVERLEL-DGGVERLRM-WA------TAFDGSVHTWTSRRVLDPEGRRI 72 (142)
T ss_pred EEEEE-cCCHHHHHHHHHhHHhhhccCCC-ceEEEEEE-cCCEEEEEE-EE------EcCCCcEEEEEEEEEEcCCCCEE
Confidence 46788 99999999999999999999999 88888876 333333332 11 222333221 111112324333
Q ss_pred EEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCcc--HHHHHHHHhH-HHHHHHHHHHH
Q 028749 118 VAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVP--KCFVNRLNTK-LVMIIENLRKL 194 (204)
Q Consensus 118 i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP--~~l~~~~~~~-~~~~~~~l~k~ 194 (204)
... .+ .. ++. ...+.+.|.|+|.++++|+|+|....++++.+| ..++..+..+ .+..+..||++
T Consensus 73 ~~~-~~----~~------~~~--~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 139 (142)
T cd08861 73 VFR-QE----EP------PPP--VASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAA 139 (142)
T ss_pred EEE-Ee----eC------CCC--hhhheeEEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHH
Confidence 211 11 11 111 123467899999997789999999999998665 4445555544 33488999888
Q ss_pred HH
Q 028749 195 AQ 196 (204)
Q Consensus 195 ~~ 196 (204)
++
T Consensus 140 ~E 141 (142)
T cd08861 140 AE 141 (142)
T ss_pred hh
Confidence 76
No 43
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.57 E-value=4.7e-06 Score=61.38 Aligned_cols=133 Identities=12% Similarity=0.178 Sum_probs=82.8
Q ss_pred EEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeee-ecCCee-EEEEEecCCCCCcccCCeeEEEEEEEEeCCCe
Q 028749 38 FRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKD-LEDNLS-IIRLRFGEHSKPLFRNREFIVYERRETMEDGT 115 (204)
Q Consensus 38 ~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~-~~~~~~-i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~ 115 (204)
|..++.| ++|+++|++++.|++..++|.+.+.+.++++. .+.... ...+... ...| .++....+....+.+.
T Consensus 3 ~~~~~~i-~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~-~~~~----~~~~~~~~v~~~~p~~ 76 (146)
T cd07824 3 FHTVWRI-PAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWR-GLLP----YRLRFELRVTRIEPLS 76 (146)
T ss_pred ceEEEEe-cCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEE-ecCC----cEEEEEEEEEeecCCc
Confidence 4567889 99999999999999999999999999999874 222211 1212221 1122 2332222222223333
Q ss_pred EEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCC-------CccHHHHHHHHhHHHH-H
Q 028749 116 LVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAG-------WVPKCFVNRLNTKLVM-I 187 (204)
Q Consensus 116 ~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G-------~iP~~l~~~~~~~~~~-~ 187 (204)
.+... . ..+ .++ .+.|.|++.+++ |+|++-..++++| .++..+++...+++.. .
T Consensus 77 ~~~~~--~----~g~--------~~~---~~~~~~~~~~~g-t~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~ 138 (146)
T cd07824 77 LLEVR--A----SGD--------LEG---VGRWTLAPDGSG-TVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAG 138 (146)
T ss_pred EEEEE--E----EEe--------eeE---EEEEEEEEcCCC-EEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhH
Confidence 33321 1 111 111 366899997664 9999999999876 5666666666666555 7
Q ss_pred HHHHHHH
Q 028749 188 IENLRKL 194 (204)
Q Consensus 188 ~~~l~k~ 194 (204)
+++|++.
T Consensus 139 ~~~L~~~ 145 (146)
T cd07824 139 EKGLARR 145 (146)
T ss_pred HHHHHhh
Confidence 7777765
No 44
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.55 E-value=3.6e-06 Score=62.00 Aligned_cols=139 Identities=11% Similarity=0.061 Sum_probs=86.5
Q ss_pred EEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeC-CCeEE
Q 028749 39 RSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETME-DGTLV 117 (204)
Q Consensus 39 k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~-~g~~~ 117 (204)
+.+..+ ++|++.++++|.|++....|.|.+...+.+ +++.....+..+. .| ++ ..|-...+....+ .+..+
T Consensus 2 ~~~~~v-~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~---~~~~~~~~~~~~~--g~-~~-~~~~~~~~~~~~~~~~~~~ 73 (146)
T cd07823 2 ENEFTV-PAPPDRVWALLLDIERVAPCLPGASLTEVE---GDDEYKGTVKVKL--GP-IS-ASFKGTARLLEDDEAARRA 73 (146)
T ss_pred CceEEe-cCCHHHHHHHhcCHHHHHhcCCCceecccc---CCCeEEEEEEEEE--cc-EE-EEEEEEEEEEeccCCCcEE
Confidence 456778 999999999999999999999987777664 3444444444431 23 32 2342222232222 33333
Q ss_pred EEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccHHH---HHHHHhHHHH-HHHHHHH
Q 028749 118 VAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCF---VNRLNTKLVM-IIENLRK 193 (204)
Q Consensus 118 i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~l---~~~~~~~~~~-~~~~l~k 193 (204)
...- .... ....+.+++. ..|.+.| .++.|+|+|...+++.|.++... ++..++++.. ++++|++
T Consensus 74 ~~~~------~g~~-~~~~g~~~~~---~~~~l~~-~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~ 142 (146)
T cd07823 74 VLEA------TGKD-ARGQGTAEAT---VTLRLSP-AGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEA 142 (146)
T ss_pred EEEE------EEec-CCCcceEEEE---EEEEEEe-cCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHH
Confidence 2210 1000 0122344433 3477888 44569999999999999888777 5666666666 8999998
Q ss_pred HHH
Q 028749 194 LAQ 196 (204)
Q Consensus 194 ~~~ 196 (204)
.++
T Consensus 143 ~~e 145 (146)
T cd07823 143 RLA 145 (146)
T ss_pred Hhc
Confidence 875
No 45
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.34 E-value=5.2e-05 Score=54.48 Aligned_cols=134 Identities=17% Similarity=0.222 Sum_probs=79.8
Q ss_pred EEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCC-eeEEEEEecCCCCCcccCCeeEEEEEEEEeCCCeEEE
Q 028749 40 SRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDN-LSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVV 118 (204)
Q Consensus 40 ~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~-~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~~i 118 (204)
.+..| ++|+++|++++.|.+..++|.+.+.+.+.+..-+.. ......... .+ +..+-...+....+.+..+.
T Consensus 3 ~~~~i-~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~---~~---g~~~~~~~~v~~~~p~~~~~ 75 (140)
T cd08865 3 ESIVI-ERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRK---FL---GRRIELTYEITEYEPGRRVV 75 (140)
T ss_pred eEEEE-cCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEE---ec---CceEEEEEEEEEecCCcEEE
Confidence 46778 999999999999999999999999888777542111 112222221 11 11221112222233444332
Q ss_pred EEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCC--ccHHHHHHHHhHHHH-HHHHHHHHH
Q 028749 119 AVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGW--VPKCFVNRLNTKLVM-IIENLRKLA 195 (204)
Q Consensus 119 ~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~--iP~~l~~~~~~~~~~-~~~~l~k~~ 195 (204)
.. .. . +.++ ..+.|.|++.+++ |++++....++++. +...++....+.... .+++|++.+
T Consensus 76 ~~-~~-----~-------~~~~---~~~~~~~~~~~~~-t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 138 (140)
T cd08865 76 FR-GS-----S-------GPFP---YEDTYTFEPVGGG-TRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALL 138 (140)
T ss_pred EE-ec-----C-------CCcc---eEEEEEEEEcCCc-eEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 21 11 1 1122 2467899998764 99999999998653 223445555555444 788888887
Q ss_pred Hh
Q 028749 196 QA 197 (204)
Q Consensus 196 ~~ 197 (204)
++
T Consensus 139 e~ 140 (140)
T cd08865 139 EA 140 (140)
T ss_pred hC
Confidence 64
No 46
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=98.29 E-value=0.00038 Score=49.92 Aligned_cols=133 Identities=14% Similarity=0.248 Sum_probs=82.1
Q ss_pred EEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEE-eCCCe
Q 028749 37 TFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRET-MEDGT 115 (204)
Q Consensus 37 ~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~-~~~g~ 115 (204)
.+..+..| ++|++++++++.|.+....|.+.+...+.+.. +.. .+... +. ...+.-+ ..+... .+++.
T Consensus 3 ~~~~~~~v-~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~-~~~-~~~~~-~~------~~g~~~~-~~~i~~~~~~~~ 71 (139)
T PF10604_consen 3 KVEVSIEV-PAPPEAVWDLLSDPENWPRWWPGVKSVELLSG-GGP-GTERT-VR------VAGRGTV-REEITEYDPEPR 71 (139)
T ss_dssp EEEEEEEE-SS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEE-CST-EEEEE-EE------ECSCSEE-EEEEEEEETTTT
T ss_pred EEEEEEEE-CCCHHHHHHHHhChhhhhhhhhceEEEEEccc-ccc-ceeEE-EE------eccccce-eEEEEEecCCCc
Confidence 45677889 99999999999999999999999999988773 222 22111 11 1122111 111211 23244
Q ss_pred EEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecC--CCCccHHHHHHHHhHHHH-HHHHHH
Q 028749 116 LVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDP--AGWVPKCFVNRLNTKLVM-IIENLR 192 (204)
Q Consensus 116 ~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~--~G~iP~~l~~~~~~~~~~-~~~~l~ 192 (204)
.+-.. + . ..+.. .+.+.|.++|.+++ |+|++....++ .|+++..+++...+.... .+++|+
T Consensus 72 ~~~~~--~----~------~~~~~---~~~~~~~~~~~~~g-t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 135 (139)
T PF10604_consen 72 RITWR--F----V------PSGFT---NGTGRWRFEPVGDG-TRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLK 135 (139)
T ss_dssp EEEEE--E----E------SSSSC---EEEEEEEEEEETTT-EEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEE--E----E------eccee---EEEEEEEEEEcCCC-EEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 43322 1 1 11222 23577999999977 99999999986 355555555555555444 788888
Q ss_pred HHHH
Q 028749 193 KLAQ 196 (204)
Q Consensus 193 k~~~ 196 (204)
+.++
T Consensus 136 ~~~E 139 (139)
T PF10604_consen 136 RAAE 139 (139)
T ss_dssp HHHH
T ss_pred cccC
Confidence 8775
No 47
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.19 E-value=0.00028 Score=51.80 Aligned_cols=140 Identities=8% Similarity=0.030 Sum_probs=79.6
Q ss_pred EEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeee--cCCe-eEEEEEecCCCCCcccCCeeEEEEEEEEeCC
Q 028749 37 TFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDL--EDNL-SIIRLRFGEHSKPLFRNREFIVYERRETMED 113 (204)
Q Consensus 37 ~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~--~~~~-~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~ 113 (204)
.+..+..| ++|+++|++++.|++..++|.+.+.....++.- +... .-..+.+. ...+ ..+-.. .....+.
T Consensus 3 ~~~~s~~I-~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~~--~~~~~~---~v~~~~p 75 (150)
T cd07818 3 RVERSIVI-NAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWE-GNDK--VGEGEM---EITESVP 75 (150)
T ss_pred EEEEEEEE-eCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEe-cCCc--ccceEE---EEEecCC
Confidence 35667889 999999999999999999999988876655431 1110 01111222 1010 111111 1112233
Q ss_pred CeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccHHH----HHHHHhHHHH-HH
Q 028749 114 GTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCF----VNRLNTKLVM-II 188 (204)
Q Consensus 114 g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~l----~~~~~~~~~~-~~ 188 (204)
+..+... .. . . -|.. + ...+.|.|+|.++ +|+|++....++.+..+..+ +....++... .+
T Consensus 76 ~~~i~~~-~~----~-~-~~~~-----~-~~~~~~~~~~~~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (150)
T cd07818 76 NERIEYE-LR----F-I-KPFE-----A-TNDVEFTLEPVGG-GTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGL 141 (150)
T ss_pred CcEEEEE-EE----e-c-CCcc-----c-cceEEEEEEEcCC-ceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHH
Confidence 3333221 11 0 0 1110 1 1347799999965 59999999999886554333 3444444444 78
Q ss_pred HHHHHHHHh
Q 028749 189 ENLRKLAQA 197 (204)
Q Consensus 189 ~~l~k~~~~ 197 (204)
++|+.+++|
T Consensus 142 ~~lk~~~E~ 150 (150)
T cd07818 142 ANLKAVLEK 150 (150)
T ss_pred HHHHHHhhC
Confidence 888888775
No 48
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.01 E-value=0.00079 Score=47.25 Aligned_cols=134 Identities=13% Similarity=0.143 Sum_probs=77.6
Q ss_pred EEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCCeEEE
Q 028749 39 RSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVV 118 (204)
Q Consensus 39 k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~~i 118 (204)
+.+..| ++|+++|++++.|++....|.+.+...+++... .........+. .......++. ......+.+..+.
T Consensus 2 ~~~~~i-~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~--~~v~~~~~~~~~~ 74 (141)
T cd07812 2 EASIEI-PAPPEAVWDLLSDPERWPEWSPGLERVEVLGGG-EGGVGARFVGG---RKGGRRLTLT--SEVTEVDPPRPGR 74 (141)
T ss_pred cEEEEe-CCCHHHHHHHHhChhhhhhhCcccceEEEcCCC-CccceeEEEEE---ecCCccccce--EEEEEecCCCceE
Confidence 457788 999999999999999999999999999888752 22222222111 1001111221 1111112122111
Q ss_pred EEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCc---cHHHHHHHHhHHHH-HHHHHHH
Q 028749 119 AVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWV---PKCFVNRLNTKLVM-IIENLRK 193 (204)
Q Consensus 119 ~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~i---P~~l~~~~~~~~~~-~~~~l~k 193 (204)
.. . .....+ ....+.|.+++.++++|++++....++.+.+ +..+++...+.... .+.++++
T Consensus 75 ~~--~----~~~~~~--------~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T cd07812 75 FR--V----TGGGGG--------VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA 139 (141)
T ss_pred EE--E----ecCCCC--------cceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence 11 0 101000 2346789999998756999999999999876 44555555443333 5555554
No 49
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=97.99 E-value=0.0012 Score=47.43 Aligned_cols=131 Identities=15% Similarity=0.150 Sum_probs=77.0
Q ss_pred EEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeec-CCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCCeE
Q 028749 38 FRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLE-DNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTL 116 (204)
Q Consensus 38 ~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~-~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~ 116 (204)
+..+..| ++|++.|++++.|++..++|.+.+.+.+++...+ .... + .+. .+ . ...+.. .....+.+..
T Consensus 3 ~~~~~~i-~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~-~--~~~---~~-~-~~~~~~--~i~~~~p~~~ 71 (138)
T cd08862 3 FEATIVI-DAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSS-F--KMK---PP-G-LVRSTF--TVTELRPGHS 71 (138)
T ss_pred EEEEEEE-cCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcE-E--EEe---cC-C-CCceEE--EEEEecCCCE
Confidence 5667889 9999999999999999999999998888876531 1221 1 122 11 1 111211 1112233333
Q ss_pred EEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCcc---HHHHHHHHhHHH-HHHHHHH
Q 028749 117 VVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVP---KCFVNRLNTKLV-MIIENLR 192 (204)
Q Consensus 117 ~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP---~~l~~~~~~~~~-~~~~~l~ 192 (204)
+... .. .+ .. .....|.|++.++++|++++.. ++.|..+ ..++........ ..+++|+
T Consensus 72 ~~~~-~~-----~~-------~~---~~~~~~~~~~~~~~~t~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk 133 (138)
T cd08862 72 FTWT-GP-----AP-------GI---SAVHRHEFEAKPDGGVRVTTSE--SLSGPLAFLFGLFVGKKLRALLPEWLEGLK 133 (138)
T ss_pred EEEE-ec-----CC-------CE---EEEEEEEEEEcCCCcEEEEEEE--EeecchHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2211 11 11 12 2236799999886789999855 4555433 234444444433 4889999
Q ss_pred HHHHh
Q 028749 193 KLAQA 197 (204)
Q Consensus 193 k~~~~ 197 (204)
+++++
T Consensus 134 ~~~E~ 138 (138)
T cd08862 134 AAAEQ 138 (138)
T ss_pred HHhcC
Confidence 88763
No 50
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.96 E-value=0.0018 Score=46.36 Aligned_cols=111 Identities=11% Similarity=0.044 Sum_probs=64.3
Q ss_pred EEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCCeEE
Q 028749 38 FRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLV 117 (204)
Q Consensus 38 ~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~~ 117 (204)
+..+..| ++|+++|++++.|++....|.+.+.+.+... ......+.+. +. .+- .+.+.........+.+..+
T Consensus 2 v~~~~~i-~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~-~~~G~~~~~~-~~---~~~--~~~~~~~~~v~~~~p~~~~ 73 (141)
T cd07822 2 ISTEIEI-NAPPEKVWEVLTDFPSYPEWNPFVRSATGLS-LALGARLRFV-VK---LPG--GPPRSFKPRVTEVEPPRRL 73 (141)
T ss_pred eEEEEEe-cCCHHHHHHHHhccccccccChhheeEeccc-cCCCCEEEEE-Ee---CCC--CCcEEEEEEEEEEcCCCEe
Confidence 5667889 9999999999999999999998876655432 2334444332 22 110 1233333333334444444
Q ss_pred EEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCC
Q 028749 118 VAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGW 171 (204)
Q Consensus 118 i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~ 171 (204)
... .. ..+ .+... ....|.|++.++++|++++.. +..|.
T Consensus 74 ~~~-~~----~~~-----~~~~~---~~~~~~~~~~~~~~T~~~~~~--~~~g~ 112 (141)
T cd07822 74 AWR-GG----LPF-----PGLLD---GEHSFELEPLGDGGTRFVHRE--TFSGL 112 (141)
T ss_pred EEE-ec----CCC-----CcEee---EEEEEEEEEcCCCcEEEEEee--EEEEE
Confidence 332 11 111 11111 335789999876779998854 44453
No 51
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.34 E-value=0.019 Score=41.53 Aligned_cols=137 Identities=11% Similarity=0.081 Sum_probs=69.9
Q ss_pred EEEEEEEecCCHHHHHHHHhcccccccchhhccceeeee---eecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCC
Q 028749 38 FRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIK---DLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDG 114 (204)
Q Consensus 38 ~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~---~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g 114 (204)
+..+.+| ++|++.|++++.|++.+++|.+......... .+..... .++... .+ ...+-...+....+.+
T Consensus 2 i~~~~~i-~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~-~~~~~~---~~---g~~~~~~~~v~~~~p~ 73 (144)
T cd07825 2 VSVSRTV-DAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDV-FRMAMR---LD---GGPYRITNHVVAFEEN 73 (144)
T ss_pred eEEEEEE-eCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCE-EEEEEE---cC---CCceEEEEEEEEECCC
Confidence 4567888 9999999999999999999997433222211 0112222 222232 11 1122222222234445
Q ss_pred eEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccHHHHH--HHHhHHH-HHHHHH
Q 028749 115 TLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVN--RLNTKLV-MIIENL 191 (204)
Q Consensus 115 ~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~l~~--~~~~~~~-~~~~~l 191 (204)
..+.... ..+..+. .. ....|.|++.++++|++++....+..+. +.-+.. ....... ..+.+|
T Consensus 74 ~~l~~~~------~~~~~~~--~~-----~~~~~~l~~~~~g~T~vt~~~~~~g~~~-~~~~~~~~~~~~~g~~~~l~~L 139 (144)
T cd07825 74 RLIAWRP------GPAGQEP--GG-----HRWRWELEPIGPGRTRVTETYDWSAVTD-LKELLGFPAFPEVQLEASLDRL 139 (144)
T ss_pred CEEEEEc------cCCCCCC--Cc-----eeEEEEEEECCCCcEEEEEEEeccCChh-hhhccccCCCCHHHHHHHHHHH
Confidence 5443321 1111111 11 2345889999877899998654433221 111111 1122223 378888
Q ss_pred HHHHH
Q 028749 192 RKLAQ 196 (204)
Q Consensus 192 ~k~~~ 196 (204)
+++++
T Consensus 140 ~~~~~ 144 (144)
T cd07825 140 ATLAE 144 (144)
T ss_pred HHHhC
Confidence 88763
No 52
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=97.30 E-value=0.032 Score=39.85 Aligned_cols=137 Identities=10% Similarity=-0.023 Sum_probs=72.5
Q ss_pred EEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCCeEE
Q 028749 38 FRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLV 117 (204)
Q Consensus 38 ~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~~ 117 (204)
+..+..| ++|+++|++++.|++..+.|.+.+...+.... ......+.... ..+ ..+-........+.+..+
T Consensus 2 i~~s~~I-~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~--~Gg~~~~~~~~--~~g----~~~~~~~~i~~~~~~~~i 72 (139)
T cd07814 2 ITIEREF-DAPPELVWRALTDPELLAQWFGPTTTAEMDLR--VGGRWFFFMTG--PDG----EEGWVSGEVLEVEPPRRL 72 (139)
T ss_pred eEEEEEe-cCCHHHHHHHcCCHHHHHhhhCcCCceEEccc--CCceEEEEEEC--CCC----CEEeccEEEEEEcCCCeE
Confidence 4567789 99999999999999999999986333322222 22222222111 011 122111222223333433
Q ss_pred EEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccHH-HHHHHHhHHHHHHHHHHHHHH
Q 028749 118 VAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKC-FVNRLNTKLVMIIENLRKLAQ 196 (204)
Q Consensus 118 i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~-l~~~~~~~~~~~~~~l~k~~~ 196 (204)
... .. ..+. | +... ....|.|++.++ .|+|++....-+.+ .|.. ............+.+||++++
T Consensus 73 ~~~-~~----~~~~-~---~~~~---~~~~~~~~~~~~-~T~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~lk~~~E 138 (139)
T cd07814 73 VFT-WA----FSDE-T---PGPE---TTVTVTLEETGG-GTRLTLTHSGFPEE-DAEQEAREGMEEGWTGTLDRLKALLE 138 (139)
T ss_pred EEE-ec----ccCC-C---CCCc---eEEEEEEEECCC-CEEEEEEEEccChH-hHHHHHHhCHhhHHHHHHHHHHHHhh
Confidence 322 11 1110 1 1122 246688999985 59999976655543 2222 222223344457899999886
Q ss_pred h
Q 028749 197 A 197 (204)
Q Consensus 197 ~ 197 (204)
+
T Consensus 139 ~ 139 (139)
T cd07814 139 K 139 (139)
T ss_pred C
Confidence 4
No 53
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=97.22 E-value=0.033 Score=40.60 Aligned_cols=134 Identities=9% Similarity=0.126 Sum_probs=73.8
Q ss_pred EEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEE-eCCCeEEE
Q 028749 40 SRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRET-MEDGTLVV 118 (204)
Q Consensus 40 ~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~-~~~g~~~i 118 (204)
++..| ++|+++++++|.|++......|-+.+.+.+ + +..-.....+. .| ++. .|-...+... .++..+.+
T Consensus 1 Gs~~v-~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~---~-~~~~~~~~v~v--G~-i~~-~~~g~~~~~~~~~~~~~~~ 71 (140)
T PF06240_consen 1 GSFEV-PAPPEKVWAFLSDPENLARCIPGVESIEKV---G-DEYKGKVKVKV--GP-IKG-TFDGEVRITEIDPPESYTL 71 (140)
T ss_dssp EEEEE-CS-HHHHHHHHT-HHHHHHHSTTEEEEEEE---C-TEEEEEEEEES--CC-CEE-EEEEEEEEEEEETTTEEEE
T ss_pred CcEEe-cCCHHHHHHHhcCHHHHHhhCCCcEEeeec---C-cEEEEEEEEEe--cc-EEE-EEEEEEEEEEcCCCcceEe
Confidence 45678 999999999999988777666666665554 4 43333333331 24 433 3333333322 33444322
Q ss_pred EEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccH---HHHHHHHhHHHH-HHHHHHHH
Q 028749 119 AVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPK---CFVNRLNTKLVM-IIENLRKL 194 (204)
Q Consensus 119 ~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~---~l~~~~~~~~~~-~~~~l~k~ 194 (204)
.... .. ..+...+... ..+...+++.|+|+|-..+++.|.+.. -++..++.++.. ++++|++.
T Consensus 72 ~~~g-----~g-----~~~~~~~~~~---~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~ 138 (140)
T PF06240_consen 72 EFEG-----RG-----RGGGSSASAN---ITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERK 138 (140)
T ss_dssp EEEE-----EE-----CTCCEEEEEE---EEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeec-----cC-----CccceEEEEE---EEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 2211 11 1233333322 223444444499999999999986544 445555666666 88888765
Q ss_pred H
Q 028749 195 A 195 (204)
Q Consensus 195 ~ 195 (204)
+
T Consensus 139 l 139 (140)
T PF06240_consen 139 L 139 (140)
T ss_dssp H
T ss_pred c
Confidence 4
No 54
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.19 E-value=0.039 Score=39.81 Aligned_cols=108 Identities=8% Similarity=0.003 Sum_probs=65.5
Q ss_pred EEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCC---eeEEEEEecCCCCCcccCCeeEEEEEEEEeCCCeE
Q 028749 40 SRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDN---LSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTL 116 (204)
Q Consensus 40 ~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~---~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~ 116 (204)
.+..| ++|+++|++++.|+++...|.+.+.+.+++..-+.. ........+ ..+ +. +--..+....+.+..
T Consensus 3 ~s~~I-~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~--~~~-~~---~~w~~~it~~~p~~~ 75 (137)
T cd07820 3 RSTVI-PAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLR--HFG-IP---QRWTTEITEVEPPRR 75 (137)
T ss_pred EEEEc-CCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEE--ecC-Cc---eEEEEEEEEEcCCCe
Confidence 46778 999999999999999999999999999998642211 123333343 122 21 211222222344444
Q ss_pred EEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCC
Q 028749 117 VVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAG 170 (204)
Q Consensus 117 ~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G 170 (204)
+. ..++ . |..+ ....-+.|++.++ +|++++....++.+
T Consensus 76 f~-~~~~----~--------G~~~--~w~h~~~f~~~~~-gT~vt~~v~~~~p~ 113 (137)
T cd07820 76 FV-DEQV----S--------GPFR--SWRHTHRFEAIGG-GTLMTDRVEYRLPL 113 (137)
T ss_pred EE-EEec----c--------CCch--hCEEEEEEEECCC-ceEEEEEEEEeCCc
Confidence 32 2122 1 1111 1234567888877 59999999888864
No 55
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=97.03 E-value=0.047 Score=41.27 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=87.9
Q ss_pred eeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCC
Q 028749 35 LHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDG 114 (204)
Q Consensus 35 ~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g 114 (204)
........+| +.|+++++++..|.|..+.|..++++.+++.. .. -++..+ .|. .-+|--..+...+..|
T Consensus 69 ~i~v~~~V~I-~kPae~vy~~W~dLe~lP~~Mkhl~SVkVldd-kr----SrW~~~---ap~--g~~v~Wea~it~d~~~ 137 (217)
T COG5637 69 PIEVEVQVTI-DKPAEQVYAYWRDLENLPLWMKHLDSVKVLDD-KR----SRWKAN---APL--GLEVEWEAEITKDIPG 137 (217)
T ss_pred ceEEEEEEEe-CChHHHHHHHHHhhhhhhHHHHhhceeeccCC-Cc----cceeEc---CCC--CceEEEeehhhccCCC
Confidence 4556677888 99999999999999999999999999999886 22 233333 442 1233333333334456
Q ss_pred eEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccHHHHHHHHhHHH----H-HHH
Q 028749 115 TLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLV----M-IIE 189 (204)
Q Consensus 115 ~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~l~~~~~~~~~----~-~~~ 189 (204)
.++- -.|+ +...+ ++.|.|| |++.++++|.|.....-.|-|+.-..++++++-+-| . -++
T Consensus 138 e~I~-W~Sl----~Ga~v-~NsG~Vr---------F~~~pg~~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~ 202 (217)
T COG5637 138 ERIQ-WESL----PGARV-ENSGAVR---------FYDAPGDSTEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLE 202 (217)
T ss_pred cEEe-eecC----CCCcC-CCCccEE---------eeeCCCCceEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHH
Confidence 6643 3466 33333 3456666 556676677777777777767677777777654333 2 456
Q ss_pred HHHHHHHh
Q 028749 190 NLRKLAQA 197 (204)
Q Consensus 190 ~l~k~~~~ 197 (204)
.+|.+.+.
T Consensus 203 RFk~~~e~ 210 (217)
T COG5637 203 RFKEYQEN 210 (217)
T ss_pred HHHHHHHc
Confidence 66665543
No 56
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=96.99 E-value=0.076 Score=39.02 Aligned_cols=136 Identities=10% Similarity=0.077 Sum_probs=80.5
Q ss_pred EEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEE-eCCCeE
Q 028749 38 FRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRET-MEDGTL 116 (204)
Q Consensus 38 ~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~-~~~g~~ 116 (204)
|.++..| +.|+++++++|.|+|......|=|++.+..- +........+ .+.++ ++|-...+... .++...
T Consensus 3 ~~G~f~V-~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~g----~e~~~~v~l~---ig~l~-~~~~g~~~~~~v~~~~~~ 73 (146)
T COG3427 3 YEGTFRV-AAPPEAVWEFLNDPEQVAACIPGVQSVETNG----DEYTAKVKLK---IGPLK-GTFSGRVRFVNVDEPPRS 73 (146)
T ss_pred ccceEEe-cCCHHHHHHHhcCHHHHHhhcCCcceeeecC----CeEEEEEEEe---eccee-EEEEEEEEEccccCCCcE
Confidence 4567788 9999999999999999988888877765433 2445555554 33255 56655544433 333333
Q ss_pred EEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccHH---HHHHHHhHHHH-HHHHHH
Q 028749 117 VVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKC---FVNRLNTKLVM-IIENLR 192 (204)
Q Consensus 117 ~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~---l~~~~~~~~~~-~~~~l~ 192 (204)
+.+.-+ .... .++ -..-....+.|.+++ |++.|....|.+|.+-.. ++..++.++.. ++..|.
T Consensus 74 ~~i~g~------G~~~---~g~---~~~~~~v~l~~~g~g-t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~ 140 (146)
T COG3427 74 ITINGS------GGGA---AGF---ADGTVDVQLEPSGEG-TRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLS 140 (146)
T ss_pred EEEEee------cccc---cce---eeeeeEEEEEEcCCC-cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 332211 0000 011 112244556777777 999999999999864333 23333444444 666666
Q ss_pred HHH
Q 028749 193 KLA 195 (204)
Q Consensus 193 k~~ 195 (204)
..+
T Consensus 141 ~~l 143 (146)
T COG3427 141 SEL 143 (146)
T ss_pred HHH
Confidence 554
No 57
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=96.85 E-value=0.15 Score=39.80 Aligned_cols=145 Identities=14% Similarity=0.235 Sum_probs=93.9
Q ss_pred CCCcEE---cCCCeEEEEEEeeeecccCCceeEEEEEEEEe-cCCHHHHHHHHhcccccccchhhccceeeeeeecCCee
Q 028749 8 SRSWSI---SEDSLRRYVHFAKISKRRSGSLHTFRSRWLLK-SVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLS 83 (204)
Q Consensus 8 ~~~Wk~---~~~gv~vy~~~~~~~~~~~~~~~~~k~~~~i~-~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~ 83 (204)
..+-++ ..++..+|+++. .+ ...-|...+|+ +-...++...|+|++.-..++.......++...+++.-
T Consensus 35 ~ddY~ly~~~~~~~~~y~KK~------~n-tdI~K~~~~I~~pnkYneIIN~LWdpn~~~~fn~~~ikgki~RvYnpNLv 107 (208)
T TIGR01599 35 KNDYNLYSTPNPDSTVYYKKD------HN-TIIGKIHLTIQDPNKYDAIIKTLWDFNDNKKFGRKFIKGKVVRVYSPNLI 107 (208)
T ss_pred CCCccccccCCCCceEEEeec------CC-cEEEEEEEEecCchhHHHHHHHHhccccccCCCchheeeeEEEEeCCCeE
Confidence 345555 345566677665 33 55567788883 44556899999999999999999999999999999999
Q ss_pred EEEEEecCCCCCcccCCeeEEEEEEEEeCCCeEEEEEeccCcccccCCCCCC--------------------C-----Cc
Q 028749 84 IIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQ--------------------N-----NS 138 (204)
Q Consensus 84 i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~--------------------~-----~~ 138 (204)
++..+++. .++-..|=|-.+.......++.++|+..|..-- +|.....+ . ..
T Consensus 108 miqqry~~--~~~~~~~YfyaLa~Kv~iSed~TiIv~~S~~in-d~n~~~~~~~~n~iv~san~f~~~idse~dir~g~l 184 (208)
T TIGR01599 108 MIQQRYKD--ASGSPNKYFYALATKVKVSEDTTIIACTSANIN-DHNKVDKKNFKNKIIESANSFKTDIDSEEDIRNGEL 184 (208)
T ss_pred EEEeecCC--CCCCcceEEeEeeeeeecCCCcEEEEEeccccc-cCCccccccccceeeeecccccCccCHHHHHHhhhh
Confidence 99999982 222223444444444444455555555564210 11111000 0 24
Q ss_pred EEEEEEceEEEEEEcCCCceEEEEE
Q 028749 139 IRGLLLQSGWVVEKLEDDSCMVTYV 163 (204)
Q Consensus 139 VR~~~~~~g~~i~~~~~~~~~v~~~ 163 (204)
-...+-++||+|+.-.+. ..|||+
T Consensus 185 ~k~fvNl~G~~IkK~~d~-v~iTyi 208 (208)
T TIGR01599 185 KKMFVNLSGFIIKKKDDN-IDITYV 208 (208)
T ss_pred hheEEeeEEEEEEecCCc-EEEEEC
Confidence 455677899999987754 888884
No 58
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=96.65 E-value=0.00038 Score=61.05 Aligned_cols=79 Identities=22% Similarity=0.366 Sum_probs=62.0
Q ss_pred CCcccCCeeEEEEEEEEeCCCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCcc
Q 028749 94 KPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVP 173 (204)
Q Consensus 94 ~p~v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP 173 (204)
.| ...|||+..+ |..+++..|+ ++...+...| |||.+..+.|.|+|.+.+..+++|+..+|++|..|
T Consensus 574 ~p-h~~~~~~ViR-------gacv~a~~sv----k~~~a~~l~~-vrA~~~~~r~liep~g~g~sr~~~i~r~dlkg~~~ 640 (674)
T KOG2200|consen 574 RP-HPSRDFGVIR-------GACVLAPLSV----KVSMAIQLGG-VRATVLDSRFLIEPCGGGQSRVTHICRVDLKGRSP 640 (674)
T ss_pred CC-CCCCCceeee-------eeeeeccccc----chhhhhhhcc-chhhhhhhhhhccccCCcchhhhhhhhhhcccCCc
Confidence 45 6679999777 5666666666 5544444555 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHH
Q 028749 174 KCFVNRLNTKLV 185 (204)
Q Consensus 174 ~~l~~~~~~~~~ 185 (204)
.|..+.+-...+
T Consensus 641 ~wy~k~fg~~c~ 652 (674)
T KOG2200|consen 641 EWYNKSFGHLCC 652 (674)
T ss_pred hhhhccccchhh
Confidence 997766544333
No 59
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=96.64 E-value=0.042 Score=42.44 Aligned_cols=138 Identities=12% Similarity=0.154 Sum_probs=88.7
Q ss_pred EEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCCeEE
Q 028749 38 FRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLV 117 (204)
Q Consensus 38 ~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~~ 117 (204)
|...=++ +++++++++++.|++.++++.|+|+.+.+.++-.+...+.-+... +|-+. =.|...... .+...+
T Consensus 70 Y~errli-gysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeVG---Fk~l~-E~y~S~Vt~---~~p~l~ 141 (227)
T KOG3177|consen 70 YSERRLI-GYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEVG---FKPLD-ERYTSNVTC---VKPHLT 141 (227)
T ss_pred HHHHhhh-CCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEec---Ccccc-hhheeeeEE---ecccce
Confidence 3334567 999999999999999999999999999999994233334434332 33122 223322211 111111
Q ss_pred EEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcC--CCceEEEEEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHH
Q 028749 118 VAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLE--DDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKL 194 (204)
Q Consensus 118 i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~--~~~~~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~ 194 (204)
... . .++.. | .-++.-|.|.|-. ++.|.+.+-+...++..+=..+++.+....+. .+..+.++
T Consensus 142 kt~--~---~d~rL------F---~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S~lhs~va~~Ffd~V~~~~v~AF~~r 207 (227)
T KOG3177|consen 142 KTV--C---ADGRL------F---NHLITIWSFKPGPNIPRTCTLDFSVSFEFKSLLHSQVATIFFDEVVKQMVNAFEQR 207 (227)
T ss_pred EEe--e---ccccH------H---HhhhheeeeccCCCCCCeEEEEEEEEEEehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 0 01111 1 1256889999988 68999999999999888888888888776665 55555555
Q ss_pred HHh
Q 028749 195 AQA 197 (204)
Q Consensus 195 ~~~ 197 (204)
+++
T Consensus 208 a~~ 210 (227)
T KOG3177|consen 208 ARK 210 (227)
T ss_pred HHH
Confidence 544
No 60
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=95.60 E-value=0.61 Score=34.26 Aligned_cols=117 Identities=12% Similarity=0.095 Sum_probs=74.1
Q ss_pred EEEEEEEecCCHHHHHHHHhccc--ccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCCe
Q 028749 38 FRSRWLLKSVSPQQFITVANAID--AAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGT 115 (204)
Q Consensus 38 ~k~~~~i~~~~~~~v~~~l~d~~--~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~ 115 (204)
+..+..| ++|++++++++.|.+ ..+.|-+.+.++++++--.....+..+.|. .. . +.-....+....++..
T Consensus 3 ~~~e~~i-~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~---~~-~--~~~~~kE~l~~~D~~~ 75 (148)
T cd07816 3 LEHEVEL-KVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFG---PG-G--KVKYVKERIDAVDEEN 75 (148)
T ss_pred EEEEEEe-cCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEc---CC-C--cceEEEEEEEEEcccc
Confidence 5678889 999999999999987 357899999999988752233456666664 22 1 1112233333334433
Q ss_pred EEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCC
Q 028749 116 LVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAG 170 (204)
Q Consensus 116 ~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G 170 (204)
..+. +++- +.+. +. -.-..|.+.+.+.|.++++|.+.+....++..
T Consensus 76 ~~~~-y~vv---eg~~-~~----~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~ 121 (148)
T cd07816 76 KTYK-YTVI---EGDV-LK----DGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKG 121 (148)
T ss_pred cEEE-EEEE---eccc-cc----CceEEEEEEEEEEECCCCCEEEEEEEEEEECC
Confidence 3222 2321 2111 10 01256788899999987889999999998774
No 61
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=95.35 E-value=0.64 Score=32.87 Aligned_cols=134 Identities=13% Similarity=0.072 Sum_probs=69.0
Q ss_pred EEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCCeEE
Q 028749 38 FRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLV 117 (204)
Q Consensus 38 ~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~~ 117 (204)
+..+..| ++|++.|++++.|++..++|..... .--.+..+..+.+ ... .+ +.+.....+...+.+..+
T Consensus 2 ~~~~~~i-~ap~e~Vw~~~td~~~~~~W~~~~~---~~~~~~~G~~~~~-~~~---~~----~~~~~~~~v~~~~~~~~l 69 (136)
T cd08893 2 FVYVTYI-RATPEKVWQALTDPEFTRQYWGGTT---VESDWKVGSAFEY-RRG---DD----GTVDVEGEVLESDPPRRL 69 (136)
T ss_pred eEEEEEe-cCCHHHHHHHHcCchhhhheecccc---cccCCcCCCeEEE-EeC---CC----cccccceEEEEecCCCeE
Confidence 4567889 9999999999999999999976522 1011223333332 222 11 122222222223344443
Q ss_pred EEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccHHHHHHHHhHHHHHHHHHHHHHH
Q 028749 118 VAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVMIIENLRKLAQ 196 (204)
Q Consensus 118 i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~l~~~~~~~~~~~~~~l~k~~~ 196 (204)
..... ....+... .+......|.|++.++ .|++++....-+.+. ............++.+|+++++
T Consensus 70 ~~~~~------~~~~~~~~---~~~~~~v~~~l~~~~~-~t~l~~~~~~~~~~~---~~~~~~~~gw~~~l~~Lk~~~e 135 (136)
T cd08893 70 VHTWR------AVWDPEMA---AEPPSRVTFEIEPVGD-VVKLTVTHDGFPPGS---PTLEGVSGGWPAILSSLKTLLE 135 (136)
T ss_pred EEEEe------cCCCcccC---CCCCEEEEEEEEecCC-cEEEEEEecCCCCch---hHHHhhhcCHHHHHHHHHHHhc
Confidence 32211 01111000 0011234577888766 588888655543332 2333333344458899998876
No 62
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=95.16 E-value=0.91 Score=33.55 Aligned_cols=131 Identities=11% Similarity=0.030 Sum_probs=73.7
Q ss_pred ceeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCC
Q 028749 34 SLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMED 113 (204)
Q Consensus 34 ~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~ 113 (204)
+...+..+..| ++|++.|++++.|++...+|.+.. .. .+..+..+ .+.+. .+ .++-........+.
T Consensus 9 ~~~~i~~~~~i-~Ap~e~Vw~altdp~~~~~W~~~~----~~-~~~~G~~~-~~~~~---~~----~~~~~~~~v~e~~p 74 (157)
T cd08899 9 GGATLRFERLL-PAPIEDVWAALTDPERLARWFAPG----TG-DLRVGGRV-EFVMD---DE----EGPNATGTILACEP 74 (157)
T ss_pred CCeEEEEEEec-CCCHHHHHHHHcCHHHHHhhcCCC----CC-CcccCceE-EEEec---CC----CCCccceEEEEEcC
Confidence 35678899999 999999999999999999999832 11 12222222 22232 11 11111122222334
Q ss_pred CeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccHHHHHHHHhHHHHHHHHHHH
Q 028749 114 GTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVMIIENLRK 193 (204)
Q Consensus 114 g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~l~~~~~~~~~~~~~~l~k 193 (204)
+..+.... .... .. ....|.|++.++ +|++++....-+.- .............+..|++
T Consensus 75 ~~~l~~~~------~~~~---~~-------~~~~~~l~~~~~-gT~v~~~~~~~~~~----~~~~~~~~GW~~~L~~Lk~ 133 (157)
T cd08899 75 PRLLAFTW------GEGG---GE-------SEVRFELAPEGD-GTRLTLTHRLLDER----FGAGAVGAGWHLCLDVLEA 133 (157)
T ss_pred CcEEEEEe------cCCC---CC-------ceEEEEEEEcCC-CEEEEEEEeccCch----hhhhhhcccHHHHHHHHHH
Confidence 44333221 1110 11 134567888764 59999977664433 1223333344458999999
Q ss_pred HHHhCC
Q 028749 194 LAQACP 199 (204)
Q Consensus 194 ~~~~~~ 199 (204)
++++-+
T Consensus 134 ~~e~~~ 139 (157)
T cd08899 134 ALEGGP 139 (157)
T ss_pred HHcCCC
Confidence 998765
No 63
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=95.10 E-value=0.82 Score=32.73 Aligned_cols=31 Identities=10% Similarity=0.112 Sum_probs=28.0
Q ss_pred EEEEEEEecCCHHHHHHHHhcccccccchhhc
Q 028749 38 FRSRWLLKSVSPQQFITVANAIDAAKQWDSDL 69 (204)
Q Consensus 38 ~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~ 69 (204)
++.+..| ++|++.|++++.|++...+|.+..
T Consensus 3 i~~~i~i-~a~~e~Vw~~~td~~~~~~W~~~~ 33 (145)
T cd08898 3 IERTILI-DAPRERVWRALTDPEHFGQWFGVK 33 (145)
T ss_pred eEEEEEe-cCCHHHHHHHhcChhhhhhccccc
Confidence 6678899 999999999999999999998764
No 64
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=94.43 E-value=1.3 Score=32.06 Aligned_cols=137 Identities=12% Similarity=0.039 Sum_probs=68.6
Q ss_pred EEEEEEEecCCHHHHHHHHhcccccccchhhcc-cee--eeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCC
Q 028749 38 FRSRWLLKSVSPQQFITVANAIDAAKQWDSDLV-EAK--YIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDG 114 (204)
Q Consensus 38 ~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~-~~~--~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g 114 (204)
+..+-.| ++|++.|++++.|++...+|-.--. ... .++ +.......+. +. .| .+.++-....+...+.+
T Consensus 2 l~i~r~i-~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d-~~~GG~~~~~-~~---~~--~g~~~~~~g~v~~i~p~ 73 (146)
T cd08896 2 LVLSRTI-DAPRELVWRAWTEPELLKQWFCPKPWTTEVAELD-LRPGGAFRTV-MR---GP--DGEEFPNPGCFLEVVPG 73 (146)
T ss_pred eEEEEEe-CCCHHHHHHHcCCHHHHhccCCCCCccceEEEEE-eecCcEEEEE-EE---CC--CCCEecceEEEEEEeCC
Confidence 4566788 9999999999999999999954210 011 111 1122222222 21 11 12344333334344555
Q ss_pred eEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccHHHHHHH----HhHHHHHHHH
Q 028749 115 TLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRL----NTKLVMIIEN 190 (204)
Q Consensus 115 ~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~l~~~~----~~~~~~~~~~ 190 (204)
..+...... .....|...... ..-|.|++.++ +|+++... ..+ -+....... ....+..|.+
T Consensus 74 ~~l~~t~~~----~~~~~~~~~~~~-----~v~~~~~~~~~-gT~Ltl~~-~~~---~~~~~~~~~~~~~~~GW~~~l~~ 139 (146)
T cd08896 74 ERLVFTDAL----TPGWRPAEKPFM-----TAIITFEDEGG-GTRYTARA-RHW---TEADRKQHEEMGFHDGWGTAADQ 139 (146)
T ss_pred CEEEEEEee----cCCcCCCCCCcE-----EEEEEEEecCC-cEEEEEEE-EeC---CHHHHHHHHHcCHHHHHHHHHHH
Confidence 555544332 111112111211 23488888764 59998743 322 122221111 2334448888
Q ss_pred HHHHHH
Q 028749 191 LRKLAQ 196 (204)
Q Consensus 191 l~k~~~ 196 (204)
|+.+++
T Consensus 140 L~~~l~ 145 (146)
T cd08896 140 LAALAE 145 (146)
T ss_pred HHHHHh
Confidence 888875
No 65
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=94.39 E-value=1.3 Score=31.77 Aligned_cols=130 Identities=11% Similarity=0.126 Sum_probs=70.3
Q ss_pred EEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCCeEE
Q 028749 38 FRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLV 117 (204)
Q Consensus 38 ~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~~ 117 (204)
++....| ++|+++|++++.|++...+|-..-... .+..+..+. +.|. + . +..+ ...+...+.+..+
T Consensus 2 ~~~~~~i-~ap~e~Vw~a~t~p~~l~~W~~~~~~~----~~~~Gg~~~-~~~~---~--~-~~~~--~g~~~~~~p~~~l 67 (136)
T cd08901 2 AKTAMLI-RRPVAEVFEAFVDPEITTKFWFTGSSG----RLEEGKTVT-WDWE---M--Y-GASV--PVNVLEIEPNKRI 67 (136)
T ss_pred eeEEEEe-cCCHHHHHHHhcCHHHhccccccCCCc----cccCCCEEE-EEEE---c--c-CCce--EEEEEEEcCCCEE
Confidence 4567889 999999999999999999984332111 122222222 2222 1 1 1122 1222233445554
Q ss_pred EEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccHHHHHHH--HhHHHHHHHHHHHHH
Q 028749 118 VAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRL--NTKLVMIIENLRKLA 195 (204)
Q Consensus 118 i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~l~~~~--~~~~~~~~~~l~k~~ 195 (204)
.... ..+ .. . ....|.|++.+++.|++++. +..+...-+..+.... ......++.+|+.++
T Consensus 68 ~~~w------~~~-----~~----~-s~v~~~l~~~~~ggT~ltl~-~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l 130 (136)
T cd08901 68 VIEW------GDP-----GE----P-TTVEWTFEELDDGRTFVTIT-ESGFPGTDDEGLKQALGSTEGWTLVLAGLKAYL 130 (136)
T ss_pred EEEe------cCC-----CC----C-EEEEEEEEECCCCcEEEEEE-ECCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4321 111 01 1 23568888887567999986 5555443332322211 233344899999998
Q ss_pred HhC
Q 028749 196 QAC 198 (204)
Q Consensus 196 ~~~ 198 (204)
++-
T Consensus 131 e~g 133 (136)
T cd08901 131 EHG 133 (136)
T ss_pred hcC
Confidence 763
No 66
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=94.34 E-value=1.2 Score=30.98 Aligned_cols=123 Identities=12% Similarity=0.122 Sum_probs=65.2
Q ss_pred cCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCCeEEEEEeccCc
Q 028749 46 SVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASLPK 125 (204)
Q Consensus 46 ~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~ 125 (204)
++|++.|++++.+++...+| .......++ +..+..+.+.. . - ..++....++.....+..+......
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W--~~~~~~~~~-~~~Gg~~~~~~-~---~----g~~~~~~~~v~~~~p~~~i~~~~~~-- 67 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQW--FTTSEAEMD-FRPGGSFRFMD-P---D----GGEFGFDGTVLEVEPPERIVFTWRM-- 67 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHH--SEEEEEEEE-CSTTEEEEEEE-T---T----SEEEEEEEEEEEEETTTEEEEEEEE--
T ss_pred CcCHHHHHHHHCCHhHHhhc--cCCCcceee-eecCCEEEEEe-c---C----CCCceeeEEEEEEeCCEEEEEEEEc--
Confidence 58999999999999999999 111111111 13344343311 1 1 2344444334344455554433222
Q ss_pred ccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccHHHHHH-HHhHHHHHHHHHHHHHH
Q 028749 126 EIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNR-LNTKLVMIIENLRKLAQ 196 (204)
Q Consensus 126 s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~l~~~-~~~~~~~~~~~l~k~~~ 196 (204)
+..+. +......+.|++ .++.|++++... |.-+.-.... ........+.+|+.+++
T Consensus 68 ----~~~~~------~~~~~v~~~~~~-~~~~T~l~~~~~----~~~~~~~~~~~~~~gw~~~l~~L~~~lE 124 (124)
T PF08327_consen 68 ----PDDPD------GPESRVTFEFEE-EGGGTRLTLTHS----GFPDDDEEEEGMEQGWEQMLDRLKAYLE 124 (124)
T ss_dssp ----ETSSS------CEEEEEEEEEEE-ETTEEEEEEEEE----EEHSHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred ----cCCCC------CCceEEEEEEEE-cCCcEEEEEEEE----cCCccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11111 223456688999 556699988662 2222223333 33344447788888875
No 67
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=92.93 E-value=2.6 Score=30.52 Aligned_cols=141 Identities=13% Similarity=0.078 Sum_probs=70.2
Q ss_pred EEEEEEEecCCHHHHHHHHhcccccccchhhcc-cee--eeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCC
Q 028749 38 FRSRWLLKSVSPQQFITVANAIDAAKQWDSDLV-EAK--YIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDG 114 (204)
Q Consensus 38 ~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~-~~~--~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g 114 (204)
+..+-.| ++|++.|++++.|++...+|...-. ... .++--.....-+++.+...+..--.+.++.....+...+.+
T Consensus 2 ~~~~r~i-~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p~ 80 (146)
T cd08895 2 DRLHRVI-AAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVPN 80 (146)
T ss_pred EEEEEEE-CCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEcCC
Confidence 3456778 9999999999999999999975321 111 12221122223333332100000122334433344444555
Q ss_pred eEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccHHH-HHHHHhHHHHHHHHHHH
Q 028749 115 TLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCF-VNRLNTKLVMIIENLRK 193 (204)
Q Consensus 115 ~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~l-~~~~~~~~~~~~~~l~k 193 (204)
..+...... ..+..| + . ...-|.|++.+ +.|++++.... +|... ..........++..|++
T Consensus 81 ~~i~~~~~~----~~~~~~---~----~-~~v~~~~~~~~-~~T~lt~~~~~-----~~~~~~~~~~~~GW~~~l~~L~~ 142 (146)
T cd08895 81 ERIVYTDVF----DDPSLS---G----E-MTMTWTLSPVS-GGTDVTIVQSG-----IPDGIPPEDCELGWQESLANLAA 142 (146)
T ss_pred CEEEEEEEe----cCCCCC---c----e-EEEEEEEEecC-CCEEEEEEEeC-----CCchhhhhHHHHHHHHHHHHHHH
Confidence 555443221 111111 1 1 13557788877 45898885542 22221 11222223337888988
Q ss_pred HHHh
Q 028749 194 LAQA 197 (204)
Q Consensus 194 ~~~~ 197 (204)
++++
T Consensus 143 ~le~ 146 (146)
T cd08895 143 LVEA 146 (146)
T ss_pred HhcC
Confidence 8763
No 68
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=92.76 E-value=2.7 Score=30.18 Aligned_cols=29 Identities=7% Similarity=0.128 Sum_probs=25.4
Q ss_pred EEEEEEEecCCHHHHHHHHhcccccccchh
Q 028749 38 FRSRWLLKSVSPQQFITVANAIDAAKQWDS 67 (204)
Q Consensus 38 ~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~ 67 (204)
+..+-.| ++|++.|++++.|++...+|-.
T Consensus 2 l~~~r~i-~ap~e~Vw~a~t~p~~l~~W~~ 30 (139)
T cd08894 2 IVTTRVI-DAPRDLVFAAWTDPEHLAQWWG 30 (139)
T ss_pred EEEEEEe-CCCHHHHHHHhCCHHHHhhccC
Confidence 4566788 9999999999999999999964
No 69
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=90.24 E-value=5.4 Score=28.77 Aligned_cols=31 Identities=6% Similarity=0.061 Sum_probs=26.5
Q ss_pred EEEEEEEecCCHHHHHHHHhcccccccchhhc
Q 028749 38 FRSRWLLKSVSPQQFITVANAIDAAKQWDSDL 69 (204)
Q Consensus 38 ~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~ 69 (204)
+..+-.| ++|++.|++.+.|++...+|-..-
T Consensus 2 l~i~r~~-~ap~e~Vw~a~Tdpe~l~~W~~p~ 32 (142)
T cd07826 2 IVITREF-DAPRELVFRAHTDPELVKRWWGPR 32 (142)
T ss_pred EEEEEEE-CCCHHHHHHHhCCHHHHhhccCCC
Confidence 4456778 999999999999999999997643
No 70
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=89.61 E-value=0.012 Score=47.13 Aligned_cols=121 Identities=17% Similarity=0.088 Sum_probs=79.9
Q ss_pred cceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEE
Q 028749 70 VEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWV 149 (204)
Q Consensus 70 ~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~ 149 (204)
.....++.+..++.+....+.....-.+++|+|+........+.+......+++ ..+..+++..++|+..+..|++
T Consensus 82 ~v~~~~~~~~~~~~~~~s~~~~~~~~i~~~~~~i~~~~v~~~~~~~~~~~~~~~----s~~~~~~~~~~~~~~n~~~~~~ 157 (241)
T KOG3845|consen 82 EVYNMLEKIQKNTDIWTSEFDSFNVDIFRPRVFIDSGSVFRLEHMINIPVTTCV----SRAFLSAKVILVRGYNHPCGVF 157 (241)
T ss_pred hHHHHHHHHHhheeeeeEecHhhhhhcccccccCCcceEeehhhccccccceec----cchhhcccceeeeccCCcceEE
Confidence 556666666677777777665322223889999977666555554444333333 6778888999999999999999
Q ss_pred EEEcCCC--ceEEEEEEeecCCCCccHHHHHHH-HhHHHHHHHHHHHH
Q 028749 150 VEKLEDD--SCMVTYVVQLDPAGWVPKCFVNRL-NTKLVMIIENLRKL 194 (204)
Q Consensus 150 i~~~~~~--~~~v~~~~~~D~~G~iP~~l~~~~-~~~~~~~~~~l~k~ 194 (204)
..+++.. .+...-..+.|.+|..+....+.. +..+..+..+.++.
T Consensus 158 ~~~l~~~~~~~~~~~~~~~d~rg~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (241)
T KOG3845|consen 158 CVPLPIEPFILAWLREWFLDLRGLPQENVGERPEARTLVNFELAPLKA 205 (241)
T ss_pred EEEcCCcchhHHHHHHHHhhcccCCCccccccccccccchhhcchhhc
Confidence 9999953 344444568888888877776663 33344333334433
No 71
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=89.00 E-value=6.8 Score=28.15 Aligned_cols=137 Identities=12% Similarity=0.002 Sum_probs=69.2
Q ss_pred EEEEEEEecCCHHHHHHHHhcccccccchhhcc--ceeeee-eecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCC
Q 028749 38 FRSRWLLKSVSPQQFITVANAIDAAKQWDSDLV--EAKYIK-DLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDG 114 (204)
Q Consensus 38 ~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~--~~~~l~-~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g 114 (204)
+..+-.| ++|++.|++++.|++...+|-.--. .....+ .+.......+. +. .+ .++.+-....+...+.+
T Consensus 2 ~~i~r~~-~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~-~~---~~--~g~~~~~~g~~~~~~p~ 74 (143)
T cd08900 2 FTLERTY-PAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVGGREVSR-GG---PK--GGPEITVEARYHDIVPD 74 (143)
T ss_pred EEEEEEe-CCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCCCEEEEE-EE---CC--CCCEEeeeEEEEEecCC
Confidence 4456678 9999999999999999999974311 111111 11222222222 21 11 23344434444444555
Q ss_pred eEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEee-cCCCCccHHHHHHHHhHHHHHHHHHHH
Q 028749 115 TLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQL-DPAGWVPKCFVNRLNTKLVMIIENLRK 193 (204)
Q Consensus 115 ~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~-D~~G~iP~~l~~~~~~~~~~~~~~l~k 193 (204)
..+...... ..+..|. +. ...-+.|++.++ .|+++...+. .+.+. .. ...........+.+|++
T Consensus 75 ~~l~~t~~~----~~~~~~~--~~-----s~v~~~l~~~~~-gT~l~~~~~~~~~~~~--~~-~~~~~~GW~~~l~~L~~ 139 (143)
T cd08900 75 ERIVYTYTM----HIGGTLL--SA-----SLATVEFAPEGG-GTRLTLTEQGAFLDGD--DD-PAGREQGTAALLDNLAA 139 (143)
T ss_pred ceEEEEEee----ccCCccc--cc-----eEEEEEEEECCC-CEEEEEEEEEeccccc--ch-hhhHHHHHHHHHHHHHH
Confidence 555443222 1111111 11 123467778764 5999986553 22221 11 22223334447888888
Q ss_pred HHH
Q 028749 194 LAQ 196 (204)
Q Consensus 194 ~~~ 196 (204)
+++
T Consensus 140 ~l~ 142 (143)
T cd08900 140 ELE 142 (143)
T ss_pred HHh
Confidence 875
No 72
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=88.57 E-value=6.9 Score=27.74 Aligned_cols=128 Identities=10% Similarity=0.034 Sum_probs=66.7
Q ss_pred EEEEEEEecCCHHHHHHHHhcccccccchhhccceee--ee-eecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCC
Q 028749 38 FRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKY--IK-DLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDG 114 (204)
Q Consensus 38 ~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~--l~-~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g 114 (204)
+..+..| ++|++.|++++.|++...+|-.-...... .+ .+..+.... +.+. .+ -...++.....+...+.+
T Consensus 2 ~~~~~~~-~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~-~~~~---~~-~g~~~~~~~g~~~ei~p~ 75 (133)
T cd08897 2 ITVETTV-DAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFS-YRME---AK-DGSMGFDFEGTYTEVEPH 75 (133)
T ss_pred EEEEEEe-CCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEE-EEEE---cC-CCCcccccceEEEEECCC
Confidence 4556788 99999999999999999999432211111 11 111222222 2221 11 011122222333334555
Q ss_pred eEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccHHHHHHHHhHHHHHHHHHHHH
Q 028749 115 TLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVMIIENLRKL 194 (204)
Q Consensus 115 ~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~l~~~~~~~~~~~~~~l~k~ 194 (204)
..+... . . .+ ....+.|++.+ ++|+++.. +. . ++..............+.+|+++
T Consensus 76 ~~l~~~--~----~-------~~------~~v~~~l~~~~-~gT~l~l~-~~-~---~~~~~~~~~~~GW~~~l~~L~~~ 130 (133)
T cd08897 76 KLIEYT--M----E-------DG------REVEVEFTEEG-DGTKVVET-FD-A---ENENPVEMQRQGWQAILDNFKKY 130 (133)
T ss_pred CEEEEE--c----C-------CC------CEEEEEEEECC-CCEEEEEE-EC-C---CCCCcHHHHHHHHHHHHHHHHHH
Confidence 554432 1 0 01 12468888876 45998875 22 1 23323333344445578899888
Q ss_pred HH
Q 028749 195 AQ 196 (204)
Q Consensus 195 ~~ 196 (204)
++
T Consensus 131 le 132 (133)
T cd08897 131 VE 132 (133)
T ss_pred hh
Confidence 75
No 73
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=85.33 E-value=12 Score=27.33 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=29.9
Q ss_pred eeEEEEEEEEecCCHHHHHHHHhcccccccchh
Q 028749 35 LHTFRSRWLLKSVSPQQFITVANAIDAAKQWDS 67 (204)
Q Consensus 35 ~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~ 67 (204)
...++.+.+| ++|++.||+++.|++...+|-.
T Consensus 7 ~~~~~~er~i-~aP~e~Vf~A~Tdpe~l~~W~~ 38 (149)
T COG3832 7 DRTLEIERLI-DAPPEKVFEALTDPELLARWFM 38 (149)
T ss_pred CceEEEEEee-cCCHHHHHHHhcCHHHHHhhcC
Confidence 5678899999 9999999999999999999987
No 74
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=70.87 E-value=36 Score=24.47 Aligned_cols=138 Identities=9% Similarity=-0.035 Sum_probs=67.0
Q ss_pred EEEEEEEecCCHHHHHHHHhcccccccchhhcc-ce---eeeeeec--CCeeEEEEEecCCCCCcccCCeeEEEEEEEEe
Q 028749 38 FRSRWLLKSVSPQQFITVANAIDAAKQWDSDLV-EA---KYIKDLE--DNLSIIRLRFGEHSKPLFRNREFIVYERRETM 111 (204)
Q Consensus 38 ~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~-~~---~~l~~~~--~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~ 111 (204)
++.+.+| ++|++.|++++.| ...+|-.--. .. -....++ ..... +. . .+ .++++. ...+...
T Consensus 2 ~~~~~~i-~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~~~GG~~-~~--~---~~--~g~~~~-~g~v~~v 69 (149)
T cd08891 2 VRKSVTV-PAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEPRAGGRW-YE--I---GE--DGTECE-WGTVLAW 69 (149)
T ss_pred eEEEEEe-cCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcccCCcEE-EE--e---cC--CCcEec-eEEEEEE
Confidence 5678889 9999999999998 3566753211 00 0111112 12222 11 1 11 234443 2334344
Q ss_pred CCCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCc----cHHHHHHHHhHHHHH
Q 028749 112 EDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWV----PKCFVNRLNTKLVMI 187 (204)
Q Consensus 112 ~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~i----P~~l~~~~~~~~~~~ 187 (204)
+.+..+...... .+..+..+.. ....-|.|++.+++.|+++.... .+...- ..............+
T Consensus 70 ~p~~~l~~tw~~-----~~~~~~~~~~----~t~vt~~l~~~~~~gT~ltl~~~-~~~~~~~~~~~~~~~~~~~~GW~~~ 139 (149)
T cd08891 70 EPPSRLVFTWQI-----NADWRPDPDK----ASEVEVRFEAVGAEGTRVELEHR-GFERHGDGWEAAAMRMGYDGGWPLL 139 (149)
T ss_pred cCCCEEEEEecc-----CCCcCcCCCC----ceEEEEEEEECCCCCeEEEEEEe-cccccCcchhhHHHHhcccCcHHHH
Confidence 555555443221 1111111110 12356889998735699887544 332211 122222223344447
Q ss_pred HHHHHHHHHh
Q 028749 188 IENLRKLAQA 197 (204)
Q Consensus 188 ~~~l~k~~~~ 197 (204)
+..|+.++++
T Consensus 140 L~~L~~~l~~ 149 (149)
T cd08891 140 LERYAAAAEK 149 (149)
T ss_pred HHHHHHHhcC
Confidence 8888888764
No 75
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=62.20 E-value=51 Score=23.01 Aligned_cols=123 Identities=10% Similarity=0.086 Sum_probs=65.7
Q ss_pred EEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCeeEEEEEecCCCCCcccCCeeEEEEEEEEeCCCeEE
Q 028749 38 FRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLV 117 (204)
Q Consensus 38 ~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~~i~y~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~~ 117 (204)
+..+-.| ++|++.|++++.|++...+|-..... ++ ...+....+ +. ..+ ...+...+.+..+
T Consensus 2 i~~~r~i-~ap~e~Vw~A~T~~e~l~~W~~~~~~---~d-~~~GG~~~~--~~---------g~~--~g~~~~i~p~~~l 63 (126)
T cd08892 2 ISLTETF-QVPAEELYEALTDEERVQAFTRSPAK---VD-AKVGGKFSL--FG---------GNI--TGEFVELVPGKKI 63 (126)
T ss_pred eEEEEEE-CCCHHHHHHHHCCHHHHHhhcCCCce---ec-CCCCCEEEE--eC---------Cce--EEEEEEEcCCCEE
Confidence 3456788 99999999999999999999643111 11 111211111 11 111 1223334455555
Q ss_pred EEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEEEEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHHHH
Q 028749 118 VAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQ 196 (204)
Q Consensus 118 i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~ 196 (204)
...... +..|. .+ ....-|.|++.+ ++|++++....-+.+ -.......... ++.+|++++.
T Consensus 64 ~~~w~~------~~~~~-~~-----~s~v~~~l~~~~-~gT~ltl~~~g~~~~-----~~~~~~~GW~~~~~~~l~~~~~ 125 (126)
T cd08892 64 VQKWRF------KSWPE-GH-----YSTVTLTFTEKD-DETELKLTQTGVPAG-----EEERTREGWERYYFESIKQTFG 125 (126)
T ss_pred EEEEEc------CCCCC-CC-----cEEEEEEEEECC-CCEEEEEEEECCCCc-----hHHHHHhhHHHHHHHHHHHHhC
Confidence 544322 11121 11 123568888875 559999866544332 12333334444 6788888763
No 76
>PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO). One of the proteins the domain is found in is Pheophorbide a oxygenase (PaO) which seems to be a key regulator of chlorophyll catabolism. Arabidopsis PaO (AtPaO) is a Rieske-type 2Fe-2S enzyme that is identical to Arabidopsis accelerated cell death 1 and homologous to lethal leaf spot 1 (LLS1) of maize [], in which the domain described here is also found. ; GO: 0010277 chlorophyllide a oxygenase [overall] activity, 0055114 oxidation-reduction process
Probab=44.53 E-value=92 Score=20.65 Aligned_cols=36 Identities=6% Similarity=0.105 Sum_probs=28.7
Q ss_pred eEEEEEEcCCCceEEEEEEeecC----CCCccHHHHHHHH
Q 028749 146 SGWVVEKLEDDSCMVTYVVQLDP----AGWVPKCFVNRLN 181 (204)
Q Consensus 146 ~g~~i~~~~~~~~~v~~~~~~D~----~G~iP~~l~~~~~ 181 (204)
......|+++|.|++-+-...|+ -..+|.|+.....
T Consensus 25 ~~~~~vP~~pG~~Rli~r~~~~f~~~~~k~~P~wl~H~~~ 64 (92)
T PF08417_consen 25 QVFYCVPTGPGRCRLIWRFPRNFPAWIFKLIPRWLSHLTS 64 (92)
T ss_pred EEEEEEECCCCeEEEEEEehhhhhhHHhhcCCHHHHHHhh
Confidence 34556799999999999888888 4679999987753
No 77
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=43.28 E-value=9.1 Score=27.38 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=19.4
Q ss_pred cCCHHHHHHHHhcccccccch
Q 028749 46 SVSPQQFITVANAIDAAKQWD 66 (204)
Q Consensus 46 ~~~~~~v~~~l~d~~~r~~wd 66 (204)
++|++.|++++.|++...+|-
T Consensus 2 ~ap~e~Vw~A~Tdp~~l~~w~ 22 (132)
T PTZ00220 2 YVPPEVLYNAFLDAYTLTRLS 22 (132)
T ss_pred CCCHHHHHHHHcCHHHHHHHh
Confidence 789999999999999999884
No 78
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=36.86 E-value=82 Score=22.15 Aligned_cols=28 Identities=29% Similarity=0.525 Sum_probs=23.6
Q ss_pred EceEEEEEEcCCCceEEEEEEeecCCCC
Q 028749 144 LQSGWVVEKLEDDSCMVTYVVQLDPAGW 171 (204)
Q Consensus 144 ~~~g~~i~~~~~~~~~v~~~~~~D~~G~ 171 (204)
....|.+++++++.|+|+|.-.....+.
T Consensus 78 ~~i~Y~i~~~~~~~~~v~y~E~~~~~~~ 105 (120)
T PF11687_consen 78 FTISYEIEPLDDGSIEVTYEEEYESKGF 105 (120)
T ss_pred EEEEEEEEECCCCcEEEEEEEEEccCCH
Confidence 4567999999999999999888877764
No 79
>PF09631 Sen15: Sen15 protein; InterPro: IPR018593 The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two structural subunits of this heterotetrameric enzyme. Residues 36-157 of this subunit possess a novel homodimeric fold. Each monomer consists of three alpha-helices and a mixed antiparallel/parallel beta-sheet. Two monomers of Sen15 fold with two monomers of Sen34, one of the two catalytic subunits, to form an alpha2-beta2 tetramer as part of the functional endonuclease assembly []. ; PDB: 2GW6_B.
Probab=32.48 E-value=93 Score=21.11 Aligned_cols=27 Identities=11% Similarity=0.295 Sum_probs=11.8
Q ss_pred ceeeeeeecCCeeEEEEEecCCCCCcccCC
Q 028749 71 EAKYIKDLEDNLSIIRLRFGEHSKPLFRNR 100 (204)
Q Consensus 71 ~~~~l~~~~~~~~i~y~~~~~~~~p~v~~R 100 (204)
..=+|.-++++..|+|+... -++++||
T Consensus 73 ~ri~LAiv~~DsTiVYY~i~---~GivkP~ 99 (101)
T PF09631_consen 73 KRILLAIVDDDSTIVYYKIH---DGIVKPR 99 (101)
T ss_dssp -EEEEEEE-TTS-EEEEEEE----------
T ss_pred cEEEEEEEcCCCCEEEEEEe---CCccCCC
Confidence 34456667788888877765 4557776
No 80
>COG5453 Uncharacterized conserved protein [Function unknown]
Probab=25.35 E-value=1e+02 Score=20.70 Aligned_cols=43 Identities=28% Similarity=0.385 Sum_probs=23.1
Q ss_pred ccCCeeEEEEEEEEeCCCeEEEEEeccCcccccCCCCCCCCcEEEEE
Q 028749 97 FRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLL 143 (204)
Q Consensus 97 v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~ 143 (204)
+...||+++.+-+ .++|.+.++. +|.+++ +..-....|||+..
T Consensus 26 ~ehkdflI~atP~-~eggQyr~aG-~I~k~i--dgevk~h~FiRaD~ 68 (96)
T COG5453 26 IEHKDFLIYATPI-SEGGQYRLAG-RIEKEI--DGEVKVHRFIRADL 68 (96)
T ss_pred ccccCeEEEeeec-ccCCeEEEee-Eeeeec--Cceeeeeeeeehhh
Confidence 5567888776543 3677777665 343322 11112345666654
No 81
>cd08036 LARP_5 La RNA-binding domain of La-related protein 5. This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=20.88 E-value=85 Score=20.34 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=22.4
Q ss_pred EeecCCCCccHHHHHHHHh--HHHHHHHHHHHHHHhCC
Q 028749 164 VQLDPAGWVPKCFVNRLNT--KLVMIIENLRKLAQACP 199 (204)
Q Consensus 164 ~~~D~~G~iP~~l~~~~~~--~~~~~~~~l~k~~~~~~ 199 (204)
.++|..||+|-+++..+-+ .+..=++-|.+.++..+
T Consensus 25 ~~md~~g~Vpi~~ia~F~rik~Lt~D~~lI~~aL~~S~ 62 (75)
T cd08036 25 SQMDSDQYVPIMTVANLDHIKKLSTDVDLIVDVLRSLP 62 (75)
T ss_pred HHhccCCCEehHHHhccHHHHHhcCCHHHHHHHHhhCC
Confidence 3568889999999877643 33222555555555443
No 82
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=20.56 E-value=1.8e+02 Score=16.35 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=12.2
Q ss_pred cCCCCccHHHHHHHHhHHH
Q 028749 167 DPAGWVPKCFVNRLNTKLV 185 (204)
Q Consensus 167 D~~G~iP~~l~~~~~~~~~ 185 (204)
|--|.||-||+..+.-...
T Consensus 3 ~ttGRIPLWlVgtv~G~~v 21 (40)
T PF01788_consen 3 NTTGRIPLWLVGTVAGIAV 21 (40)
T ss_dssp --TTSS-HHHHHHHHHHHH
T ss_pred CCCCcccchHHHHHHHHHH
Confidence 4458999999988765443
Done!