Query 028749
Match_columns 204
No_of_seqs 123 out of 1087
Neff 9.0
Searched_HMMs 29240
Date Tue Mar 26 18:10:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028749.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2243-2247//hhsearch_pdb/028749hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p0l_A Steroidogenic acute reg 1.0 1 1 240.7 22.0 182 7-201 29-218 (221)
2 2r55_A STAR-related lipid tran 1.0 1 1 232.8 24.8 182 7-200 41-231 (231)
3 1em2_A MLN64 protein; beta bar 1.0 1 1 229.1 23.1 181 7-200 40-228 (229)
4 3qsz_A STAR-related lipid tran 1.0 1 1 229.0 22.1 174 8-198 2-180 (189)
5 1ln1_A PC-TP, phosphatidylchol 1.0 1 1 228.4 23.5 183 4-201 23-213 (214)
6 1jss_A Stard4, cholesterol-reg 1.0 1 1 228.1 20.9 177 7-197 41-223 (224)
7 2pso_A STAR-related lipid tran 1.0 1 1 227.0 19.0 174 7-198 48-228 (237)
8 2e3n_A Lipid-transfer protein 1.0 1 1 222.9 21.5 188 3-202 41-251 (255)
9 3fo5_A Thioesterase, adipose a 1.0 1 1 214.3 19.3 178 6-199 63-248 (258)
10 1t17_A Conserved hypothetical 1.0 1 1 70.1 15.2 139 36-197 2-144 (148)
No 1
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=240.75 Aligned_cols=182 Identities=17% Similarity=0.302 Sum_probs=161.0
Q ss_pred CCCCCEE---CCCCEEEEEEEEEEECCCCCCEEEEEEEEEEECCCHHHHHHHH-HCCCCCCCCHHHCCCEEEEEEECCCE
Q ss_conf 9999377---1799089999834302368963499999997039989999998-53564145102031204323416870
Q 028749 7 CSRSWSI---SEDSLRRYVHFAKISKRRSGSLHTFRSRWLLKSVSPQQFITVA-NAIDAAKQWDSDLVEAKYIKDLEDNL 82 (204)
Q Consensus 7 ~~~~Wk~---~~~gv~vy~~~~~~~~~~~~~~~~~k~~~~i~~~~~~~v~~~l-~d~e~r~~wd~~~~~~~~l~~~~~~~ 82 (204)
.+++|++ +++|+++|+++. ++++..||+++++ +++++++++++ .|++.|++||+++.++++|+++++++
T Consensus 29 ~~~gW~~~~~~~~gv~vy~~~~------~~~g~~~k~~~~v-~~~~~~v~~~l~~d~~~r~~Wd~~~~~~~vle~~~~~t 101 (221)
T 3p0l_A 29 NQEGWKKESQQDNGDKVMSKVV------PDVGKVFRLEVVV-DQPMERLYEELVERMEAMGEWNPNVKEIKVLQKIGKDT 101 (221)
T ss_dssp SCTTCEEEEECTTSCEEEEEEC------SSSCEEEEEEEEE-SSCHHHHHHHHTTTGGGTTTSCTTCSEEEEEEECSSSE
T ss_pred CCCCCEEEEECCCCCEEEEEEC------CCCCEEEEEEEEE-CCCHHHHHHHHHHCCCHHHHCCCCHHEEEEEEECCCCE
T ss_conf 8788739265489969999874------8885199999999-19999999999856500433272312389999439976
Q ss_pred EEEEEEECCCCCCC-CCCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECEEEEEEECCCC--CEE
Q ss_conf 69999960788986-269803999999991798499999615753125999998992889997127999982899--469
Q 028749 83 SIIRLRFGEHSKPL-FRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDD--SCM 159 (204)
Q Consensus 83 ~i~~~~~~~~~~p~-v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~--~~~ 159 (204)
.|+|+.++ ...++ +++||||+++++... ++.++++.+|+ +||.+|+.+|+|||+++.+||+|+|++++ .|+
T Consensus 102 ~I~y~~~~-~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv----~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~ 175 (221)
T 3p0l_A 102 FITHELAA-EAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMAT----DFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTK 175 (221)
T ss_dssp EEEEEEEC-C---CCSCCEEEEEEEEEEEC-SSCEEECCEEC----CCTTSCCCTTSEECEECSCEEEEEEETTEEEEEE
T ss_pred EEEEEEEC-CCCCCCCCCCEEEEEEEEEEC-CCEEEEEEEEC----CCCCCCCCCCEEEEECCCEEEEEEECCCCCCCEE
T ss_conf 99999505-556774488469999999971-99399999713----4888999998488760650899997799998179
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHCCCC
Q ss_conf 999992348999218999988767789-999999998848999
Q 028749 160 VTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQACPTN 201 (204)
Q Consensus 160 v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~~~~~ 201 (204)
++|+.++||+|+||.|++|+++...+. ++++||++++.++++
T Consensus 176 vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lr~~~~~~~~~ 218 (221)
T 3p0l_A 176 LTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRKRLESHPAS 218 (221)
T ss_dssp EEEEECEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf 9999996699987789999887899999999999998535110
No 2
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=232.81 Aligned_cols=182 Identities=16% Similarity=0.252 Sum_probs=162.5
Q ss_pred CCCCCEE--CCCCEEEEEEEEEEECCCCC-CEEEEEEEEEEECCCHHHHHHHH--HCCCCCCCCHHHCCCEEEEEEECCC
Q ss_conf 9999377--17990899998343023689-63499999997039989999998--5356414510203120432341687
Q 028749 7 CSRSWSI--SEDSLRRYVHFAKISKRRSG-SLHTFRSRWLLKSVSPQQFITVA--NAIDAAKQWDSDLVEAKYIKDLEDN 81 (204)
Q Consensus 7 ~~~~Wk~--~~~gv~vy~~~~~~~~~~~~-~~~~~k~~~~i~~~~~~~v~~~l--~d~e~r~~wd~~~~~~~~l~~~~~~ 81 (204)
..++|++ +++|+++|++.. .+ .+..+|+++++ +++++++++++ .|.+.|++||+++.++++|++++++
T Consensus 41 ~~~~W~~~~~~~gv~v~~~~~------~~~~~~~~k~~~~v-~~~~~~v~~~l~~~d~~~r~~Wd~~~~~~~vle~i~~~ 113 (231)
T 2r55_A 41 DTAGWKICREGNGVSVSWRPS------VEFPGNLYRGEGIV-YGTLEEVWDCVKPAVGGLRVKWDENVTGFEIIQSITDT 113 (231)
T ss_dssp CCSSCEEEECCSSEEEEEEEC------SSSSSEEEEEEEEE-SSCHHHHHHHHCC--CCSHHHHCTTCSEEEEEEECSSS
T ss_pred CCCCCEEEEECCCEEEEEECC------CCCCCCEEEEEEEE-CCCHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEECCCC
T ss_conf 999998988379879999825------77998489999998-89999999998761941454444465305999981898
Q ss_pred EEEEEEEECCCCCCC-CCCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECEEEEEEECC--CCCE
Q ss_conf 069999960788986-2698039999999917984999996157531259999989928899971279999828--9946
Q 028749 82 LSIIRLRFGEHSKPL-FRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLE--DDSC 158 (204)
Q Consensus 82 ~~i~~~~~~~~~~p~-v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~--~~~~ 158 (204)
+.|+|+... ...+| +++||||+++++...++|.++++.+|+ ++|.+|+.+|+|||.++.+||+|+|++ ++.|
T Consensus 114 ~~i~~~~~~-~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv----~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t 188 (231)
T 2r55_A 114 LCVSRTSTP-SAAMKLISPRDFVDLVLVKRYEDGTISSNATHV----EHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKT 188 (231)
T ss_dssp EEEEEEECC-CBTTTTBCCEEEEEEEEEEECTTSCEEEEEEEC----CCTTSCCCTTCEEEEECSEEEEEEECC--CCCE
T ss_pred EEEEEEEEC-CCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEC----CCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCE
T ss_conf 799999835-656896578767999999993999899999865----688899999978799872389999837999818
Q ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHCCC
Q ss_conf 9999992348999218999988767789-99999999884899
Q 028749 159 MVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQACPT 200 (204)
Q Consensus 159 ~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~~~~ 200 (204)
+++|+.++||+|++|.|++|.++...+. ++++|+++++++.+
T Consensus 189 ~vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lr~~~~~~~~ 231 (231)
T 2r55_A 189 NLVTFFHTDLSGYLPQNVVDSFFPRSMTRFYANLQKAVKQFHE 231 (231)
T ss_dssp EEEEEECEECCSSCCHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999998278987639999988767599999999999987069
No 3
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=1.00 E-value=1 Score=229.09 Aligned_cols=181 Identities=15% Similarity=0.197 Sum_probs=157.8
Q ss_pred CCCCCEE--CC-CCEEEEEEEEEEECCCCCCEEEEEEEEEEECCCHHHHH-HHHHCCCCCCCCHHHCCCEEEEEEECCCE
Q ss_conf 9999377--17-99089999834302368963499999997039989999-99853564145102031204323416870
Q 028749 7 CSRSWSI--SE-DSLRRYVHFAKISKRRSGSLHTFRSRWLLKSVSPQQFI-TVANAIDAAKQWDSDLVEAKYIKDLEDNL 82 (204)
Q Consensus 7 ~~~~Wk~--~~-~gv~vy~~~~~~~~~~~~~~~~~k~~~~i~~~~~~~v~-~~l~d~e~r~~wd~~~~~~~~l~~~~~~~ 82 (204)
..++|++ ++ +|+++|++.. ++....+|+++++ +++++.++ +++.|.+.|++||+++.++++|+++++++
T Consensus 40 ~~~~W~~~~~~~~g~~vy~~~~------~~~g~~~k~~~~v-~~~~~~v~~~~~~d~~~r~~Wd~~~~~~~vle~~~~~t 112 (229)
T 1em2_A 40 QEENWKFEKNNEYGDTVYTIEV------PFHGKTFILKTFL-PCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNT 112 (229)
T ss_dssp TGGGCEEEEECTTCCEEEEEEE------TTTEEEEEEEEEE-SSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEETTTE
T ss_pred CCCCCEEEEECCCCCEEEEEEC------CCCCCEEEEEEEE-CCCHHHHHHHHHHCCCCHHHCCCCCCEEEEEEECCCCE
T ss_conf 9789879786489978999861------7898359999985-38899999998848620110165661279989628985
Q ss_pred EEEEEEECCCCCCC-CCCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECEEEEEEECC--CCCEE
Q ss_conf 69999960788986-2698039999999917984999996157531259999989928899971279999828--99469
Q 028749 83 SIIRLRFGEHSKPL-FRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLE--DDSCM 159 (204)
Q Consensus 83 ~i~~~~~~~~~~p~-v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~--~~~~~ 159 (204)
.|+|+..+ ...+| +++||||+++++... ++.++++.+|+ +||.+|+.+|+|||+++.+||+|+|++ ++.|+
T Consensus 113 ~I~~~~~~-p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~Sv----~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~ 186 (229)
T 1em2_A 113 LISYDVSA-GAAGGVVSPRDFVNVRRIERR-RDRYLSSGIAT----SHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCT 186 (229)
T ss_dssp EEEEEEEC-CBTTTTBCCEEEEEEEEEEEC-SSEEEEEEEEC----CCTTSCCCTTSEECEECSEEEEEEECSSCTTCEE
T ss_pred EEEEEEEC-CCCCCCCCCCEEEEEEEEEEC-CCEEEEEEECC----CCCCCCCCCCCEEEEECCCEEEEEECCCCCCCEE
T ss_conf 99999866-767887689706999999974-99799997323----5888899999886660231899995599999689
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHCCC
Q ss_conf 999992348999218999988767789-99999999884899
Q 028749 160 VTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQACPT 200 (204)
Q Consensus 160 v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~~~~ 200 (204)
++|+.++||+|+||.|++|+++...+. ++++||++++++..
T Consensus 187 vt~~~~~Dp~G~iP~~l~n~~~~~~~~~~~~~Lr~~~~~~~~ 228 (229)
T 1em2_A 187 FVWILNTDLKGRLPRYLIHQSLAATMFEFAFHLRQRISELGA 228 (229)
T ss_dssp EEEEECEECCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999778998789999988778899999999999998507
No 4
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=1.00 E-value=1 Score=229.05 Aligned_cols=174 Identities=22% Similarity=0.391 Sum_probs=157.6
Q ss_pred CCCCEE--CCCCEEEEEEEEEEECCCCC-CEEEEEEEEEEECCCHHHHHHHHHCCCCCCCCHHHCCCEEEEEEECCCEEE
Q ss_conf 999377--17990899998343023689-634999999970399899999985356414510203120432341687069
Q 028749 8 SRSWSI--SEDSLRRYVHFAKISKRRSG-SLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSI 84 (204)
Q Consensus 8 ~~~Wk~--~~~gv~vy~~~~~~~~~~~~-~~~~~k~~~~i~~~~~~~v~~~l~d~e~r~~wd~~~~~~~~l~~~~~~~~i 84 (204)
.++|++ +++|+++|+++. ++ ++..+|+++++ ++|++++++++.|++.|++||+++.++++|++ +++..+
T Consensus 2 ~~~W~~~~~~~gv~v~~~~~------~~~~~~~~k~~~~v-~~s~~~v~~~l~D~~~~~~W~~~~~~~~vle~-~~~~~i 73 (189)
T 3qsz_A 2 QDGWSLAKDAEGIKVYVRNV------EGSPLREFRGEVRL-KAAADDVVKVLRDANAFRQWMPDVAASELLKA-TDTEQY 73 (189)
T ss_dssp -CCCEEEEEETTEEEEEECC------TTCSSCEEEEEEEE-SSCHHHHHHHHHCGGGGGGTSTTEEEEEEEEE-CSSEEE
T ss_pred CCCCEEEECCCCEEEEEEEC------CCCCEEEEEEEEEE-ECCHHHHHHHHHHHHHHHHHHHHCCEEEEEEE-CCCCEE
T ss_conf 98778987379989999857------99982799999999-79999999999768776667875488999700-499419
Q ss_pred EEEEECCCCCCC-CCCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECEEEEEEECCCCCEEEEEE
Q ss_conf 999960788986-2698039999999917984999996157531259999989928899971279999828994699999
Q 028749 85 IRLRFGEHSKPL-FRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYV 163 (204)
Q Consensus 85 ~~~~~~~~~~p~-v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~ 163 (204)
+|+.++ .|| +++||||+++++...++|.+.+...+ .++.+|+.+|+||+..+.++|.|+| ++++|+++|+
T Consensus 74 ~y~~~~---~p~p~~~RD~v~~~~~~~~~~g~~~i~~~~-----~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~ 144 (189)
T 3qsz_A 74 HYLDNS---APWPVSNRDGVYHFTYEKAGDGAITVRVEA-----VPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQ 144 (189)
T ss_dssp EEEEEC---CSSSCCCEEEEEEEEEEECTTSCEEEEEEE-----CTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEE
T ss_pred EEEEEE---CCCCCCCCCEEEEEEEEECCCCEEEEEEEC-----CCCCCCCCCCEEEEEEEEEEEEEEE-CCCEEEEEEE
T ss_conf 999921---698728810699999999899849999872-----8976578999598068447899998-9993999999
Q ss_pred EEECCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHC
Q ss_conf 92348999218999988767789-999999998848
Q 028749 164 VQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQAC 198 (204)
Q Consensus 164 ~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~~ 198 (204)
.++||+|+||.|++|++++..+. ++++|++++++.
T Consensus 145 ~~~dp~G~iP~~lvn~~~~~~~~~~l~~L~k~~~~~ 180 (189)
T 3qsz_A 145 MHASPGGSIPSWLANQTVVETPFGTLKALRSHLRQA 180 (189)
T ss_dssp EEECSCSSSCHHHHHHTTTHHHHHHHHHHHHHHTC-
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 994899999889998999987999999999986202
No 5
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=1.00 E-value=1 Score=228.39 Aligned_cols=183 Identities=17% Similarity=0.281 Sum_probs=161.1
Q ss_pred CCCCCCCCEE--CCCCEEEEEEEEEEECCCCC-CEEEEEEEEEEECCCHHHHHHHHHCCCCCCCCHHHCCCEEEEEEECC
Q ss_conf 9989999377--17990899998343023689-63499999997039989999998535641451020312043234168
Q 028749 4 PAPCSRSWSI--SEDSLRRYVHFAKISKRRSG-SLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLED 80 (204)
Q Consensus 4 ~~~~~~~Wk~--~~~gv~vy~~~~~~~~~~~~-~~~~~k~~~~i~~~~~~~v~~~l~d~e~r~~wd~~~~~~~~l~~~~~ 80 (204)
+...+++|++ +++|+++|++.. ++ ++..+|+++++++++++++++++.|.+.|++||+++.++++|+. ++
T Consensus 23 ~~~~~~~W~~~~~~~~v~v~~~~~------~~~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~-~~ 95 (214)
T 1ln1_A 23 PALAGADWQLLVETSGISIYRLLD------KKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQEC-NG 95 (214)
T ss_dssp CCCTTTTCEEEEEETTEEEEEEEE------TTTTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEE-TT
T ss_pred CCCCCCCCEEEEECCCEEEEEECC------CCCCCEEEEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHEEEECC-CC
T ss_conf 777899868999779859999646------99984799999998799999999998198899999998852898546-99
Q ss_pred CEEEEEEEECCCCCCC-CCCCEEEEEEEEEEEC-CCE--EEEEEECCCCCCCCCCCCCCCCCEEEEEECEEEEEEECCCC
Q ss_conf 7069999960788986-2698039999999917-984--99999615753125999998992889997127999982899
Q 028749 81 NLSIIRLRFGEHSKPL-FRNREFIVYERRETME-DGT--LVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDD 156 (204)
Q Consensus 81 ~~~i~~~~~~~~~~p~-v~~RDfv~~~~~~~~~-~g~--~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~ 156 (204)
..++|+.++ .|| +++||||+++++...+ +|. ++++.+|+ +||.+|+.+++||+..+.++|+|+|.+++
T Consensus 96 -~~i~~~~~~---~p~p~~~RD~v~~~~~~~~~~~g~~~~~i~~~Sv----~~p~~P~~~~~VR~~~~~~~~~i~p~~~~ 167 (214)
T 1ln1_A 96 -ETVVYWEVK---YPFPMSNRDYVYLRQRRDLDMEGRKIHVILARST----SMPQLGERSGVIRVKQYKQSLAIESDGKK 167 (214)
T ss_dssp -EEEEEEEEC---CCTTSCCEEEEEEEEEEEECSTTCCEEEEEEEEC----CBTTBCCCTTSEEECCEEEEEEEEECSSS
T ss_pred -CEEEEEEEE---CCCCCCCCEEEEEEEEEECCCCCCEEEEEEEECC----CCCCCCCCCCCEEEEEEEEEEEEECCCCC
T ss_conf -889999987---5888899428999987740569984999998353----48999877995899998999999639999
Q ss_pred CEEEEEEEEECCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHCCCC
Q ss_conf 469999992348999218999988767789-999999998848999
Q 028749 157 SCMVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQACPTN 201 (204)
Q Consensus 157 ~~~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~~~~~ 201 (204)
+|+++|+.++||+|+||.|++|++++.++. ++++|++.+++++.-
T Consensus 168 ~t~v~~~~~~Dp~G~iP~~l~n~~~~~~~~~~l~~l~k~~~~y~~~ 213 (214)
T 1ln1_A 168 GSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNYLKK 213 (214)
T ss_dssp SEEEEEEEEECCSSCCCHHHHHHHHHTHHHHHHHHHHHHHHTC---
T ss_pred CEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 6599999997899822389999999877589999999999726446
No 6
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=1.00 E-value=1 Score=228.07 Aligned_cols=177 Identities=16% Similarity=0.271 Sum_probs=154.1
Q ss_pred CCCCCEE--CCCCEEEEEEEEEEECCCCC-CEEEEEEEEEEECCCHHHHHHHHHCCCCCCCCHHHCCCEEEEEEECCCEE
Q ss_conf 9999377--17990899998343023689-63499999997039989999998535641451020312043234168706
Q 028749 7 CSRSWSI--SEDSLRRYVHFAKISKRRSG-SLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLS 83 (204)
Q Consensus 7 ~~~~Wk~--~~~gv~vy~~~~~~~~~~~~-~~~~~k~~~~i~~~~~~~v~~~l~d~e~r~~wd~~~~~~~~l~~~~~~~~ 83 (204)
..++|++ +++|+++|+++. .+ .+..||+++++ +++++++++++.|.+.|++||+++.++++|+++++++.
T Consensus 41 ~~~~W~~~~~~~gv~vy~~~~------~~~~~~~~k~~~~v-~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~id~~~~ 113 (224)
T 1jss_A 41 EEDEWRVAKKAKDVTVWRKPS------EEFNGYLYKAQGVM-DDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEENCC 113 (224)
T ss_dssp CGGGCEEEEEETTEEEEEEEC------SSSSSEEEEEEEEE-SSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECSTTEE
T ss_pred CCCCCEEEEECCCEEEEEEEC------CCCCCEEEEEEEEE-ECCHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCEE
T ss_conf 779999999789889999842------68986599999999-18999999998674541341520026899998489859
Q ss_pred EEEEEECCCCCCCCCCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECEEEEEEECCC--CCEEEE
Q ss_conf 999996078898626980399999999179849999961575312599999899288999712799998289--946999
Q 028749 84 IIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLED--DSCMVT 161 (204)
Q Consensus 84 i~~~~~~~~~~p~v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~--~~~~v~ 161 (204)
|+|+.++..+.|++++||||+++++...+++ ++++..|+ +||.+| +|+|||+.+.+||+|+|+++ +.|+++
T Consensus 114 I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv----~hp~~~--~g~VR~~~~~~g~~i~p~~~~~~~t~vt 186 (224)
T 1jss_A 114 VMRYTTAGQLLNIISPREFVDFSYTVGYEEG-LLSCGVSV----EWSETR--PEFVRGYNHPCGWFCVPLKDSPSQSLLT 186 (224)
T ss_dssp EEEEEECCBTTTTBCCEEEEEEEEEEEETTE-EEEEEEEC----CCCCCC--TTSEECEECSEEEEEEEETTEEEEEEEE
T ss_pred EEEEECCCCCCCCCCCCEEEEEEEEEECCCE-EEEEEEEE----ECCCCC--CCCEEEEECCCEEEEEECCCCCCCEEEE
T ss_conf 9999815656787899848999999986990-99999635----569899--9978997025589999758999955999
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 9992348999218999988767789-99999999884
Q 028749 162 YVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQA 197 (204)
Q Consensus 162 ~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~ 197 (204)
|++++||+|+||.|++|+++...+. ++++||+++++
T Consensus 187 ~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lr~~~~~ 223 (224)
T 1jss_A 187 GYIQTDLRGMIPQSAVDTAMASTLANFYSDLRKGLRK 223 (224)
T ss_dssp EEECEECCSCCCHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998678987619999998777599999999999850
No 7
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=1.00 E-value=1 Score=227.04 Aligned_cols=174 Identities=17% Similarity=0.309 Sum_probs=153.7
Q ss_pred CCCCCEE--CCCCEEEEEEEEEEECCCCC-CEEEEEEEEEEECCCHHHHH-HHHHCCCCCCCCHHHCCCEEEEEEECCCE
Q ss_conf 9999377--17990899998343023689-63499999997039989999-99853564145102031204323416870
Q 028749 7 CSRSWSI--SEDSLRRYVHFAKISKRRSG-SLHTFRSRWLLKSVSPQQFI-TVANAIDAAKQWDSDLVEAKYIKDLEDNL 82 (204)
Q Consensus 7 ~~~~Wk~--~~~gv~vy~~~~~~~~~~~~-~~~~~k~~~~i~~~~~~~v~-~~l~d~e~r~~wd~~~~~~~~l~~~~~~~ 82 (204)
..++|++ +++|+++|+++. .++ .+..||++++| +.++++++ .++.| |++||+++.++++|+++++++
T Consensus 48 ~~~gW~~~~~~~gi~V~~k~~-----~~~~~~~~~K~~~~v-~~~~~~v~~~ll~d---r~~Wd~~~~~~~vle~id~~~ 118 (237)
T 2pso_A 48 KFKGWVTCSSTDNTDLAFKKV-----GDGNPLKLWKASVEV-EAPPSVVLNRVLRE---RHLWDEDFVQWKVVETLDRQT 118 (237)
T ss_dssp HCCSCEEECCSSSCEEEEECC-----CSSCCCCEEEEEEEE-SSCHHHHHHHHHHC---GGGTCTTBCCCEEEEEEETTE
T ss_pred CCCCCEEEECCCCEEEEEEEC-----CCCCCCEEEEEEEEE-CCCHHHHHHHHHHH---HHHHHHHHCEEEEEEECCCCC
T ss_conf 889987972379869999986-----899971799999998-68939999999853---666875423599999839993
Q ss_pred EEEEEEECCCCCCC-CCCCEEEEEEEEEE-ECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECEEEEEEECCCCCEEE
Q ss_conf 69999960788986-26980399999999-17984999996157531259999989928899971279999828994699
Q 028749 83 SIIRLRFGEHSKPL-FRNREFIVYERRET-MEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMV 160 (204)
Q Consensus 83 ~i~~~~~~~~~~p~-v~~RDfv~~~~~~~-~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v 160 (204)
.|+|+.++ .|| +++||||+++++.. .++|.++++.+|+ +||.+|+. |+|||.++.+||+|+|.++++|++
T Consensus 119 ~I~y~~~~---~p~p~~~RDfv~~r~~r~~~~~g~~vi~~~Sv----~h~~~P~~-g~VR~~~~~~g~~i~P~~~~~t~v 190 (237)
T 2pso_A 119 EIYQYVLN---SMAPHPSRDFVVLRTWKTDLPKGMCTLVSLSV----EHEEAQLL-GGVRAVVMDSQYLIEPCGSGKSRL 190 (237)
T ss_dssp EEEEEEEC---CSSSCCCEEEEEEEEEESCCGGGCEEEEEEEC----CCTTCCCC-SSEECCEEEEEEEEEECSTTCEEE
T ss_pred EEEEEEEC---CCCCCCCEEEEEEEEEEEECCCCEEEEEEECC----CCCCCCCC-CCEEEEEECCEEEEEECCCCCEEE
T ss_conf 99999802---78886770899999999987999799999813----58888999-969899955689999789997899
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHC
Q ss_conf 99992348999218999988767789-999999998848
Q 028749 161 TYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQAC 198 (204)
Q Consensus 161 ~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~~ 198 (204)
+|+.++||+|+||.|+ |.+....+. ++.+||+.+++.
T Consensus 191 t~~~~~Dp~G~iP~~l-n~~~~~~~~~~l~~LR~~~~~~ 228 (237)
T 2pso_A 191 THICRIDLKGHSPEWY-SKGFGHLCAAEVARIRNSFQPL 228 (237)
T ss_dssp EEEEEECCSSSCTTTT-TTHHHHHHHHHHHHHHHTTSCC
T ss_pred EEEEEECCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999967997864899-9888799999999999999860
No 8
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=1.00 E-value=1 Score=222.87 Aligned_cols=188 Identities=16% Similarity=0.337 Sum_probs=158.8
Q ss_pred CCCCCCCCCEE--CCCCEEEEEEEEEEECCCCCCE--EEEEEEEEEECCCHHHHHHHHHCCCCCCCCHHHCCCEEEEEEE
Q ss_conf 99989999377--1799089999834302368963--4999999970399899999985356414510203120432341
Q 028749 3 SPAPCSRSWSI--SEDSLRRYVHFAKISKRRSGSL--HTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDL 78 (204)
Q Consensus 3 ~~~~~~~~Wk~--~~~gv~vy~~~~~~~~~~~~~~--~~~k~~~~i~~~~~~~v~~~l~d~e~r~~wd~~~~~~~~l~~~ 78 (204)
+....+.+|++ +++|+++|+++.+ ..+. +.+|+++++++++++++++++.|.+.|++||+++.++++|+++
T Consensus 41 ~~~~~~~~W~~~~~~~gv~vy~~~~~-----~~g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~i 115 (255)
T 2e3n_A 41 QDVGGDANWQLVVEEGEMKVYRREVE-----ENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHVVETL 115 (255)
T ss_dssp SCCTTCTTEEEEEEETTEEEEEECCE-----ETTEECCCEEEEEEEETCCHHHHHHHHHCGGGHHHHCCSEEEEEEEEEE
T ss_pred HHCCCCCCCEEEEECCCEEEEEEECC-----CCCCEEEEEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHCCEEEEEEEC
T ss_conf 62378999589996898799997769-----9983101279999986899999999982953175465431506899994
Q ss_pred CCCEEEEEEEECCCCCCC-CCCCEEEEEEEEEEE----CC--CEEEEEEECCCCCCCCCCCCCCCCCEEEEE---ECEEE
Q ss_conf 687069999960788986-269803999999991----79--849999961575312599999899288999---71279
Q 028749 79 EDNLSIIRLRFGEHSKPL-FRNREFIVYERRETM----ED--GTLVVAVASLPKEIAAGLHPKQNNSIRGLL---LQSGW 148 (204)
Q Consensus 79 ~~~~~i~~~~~~~~~~p~-v~~RDfv~~~~~~~~----~~--g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~---~~~g~ 148 (204)
++++.++|+.++ .|| +++||||+++++... ++ +.++++.+|+ +|+.+|+.+|+||+.. +.+|+
T Consensus 116 ~~~~~i~y~~~~---~p~p~s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv----~~~~~P~~~g~VR~~~~~~~~~~~ 188 (255)
T 2e3n_A 116 ADNAIIIYQTHK---RVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSV----DHDSAPLNNRCVRAKINVAMICQT 188 (255)
T ss_dssp ETTEEEEEEEEC---CCTTSCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEC----CCTTSCCCSSSEECEEEEEEEEEE
T ss_pred CCCCEEEEEEEE---CCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEECC----CCCCCCCCCCCEEEEEEEEEEEEE
T ss_conf 899789999952---6887588514999999952665568998899998645----799888889978999883213326
Q ss_pred EEEEC-C-------CCCEEEEEEEEECCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHCCCCC
Q ss_conf 99982-8-------99469999992348999218999988767789-9999999988489999
Q 028749 149 VVEKL-E-------DDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQACPTNK 202 (204)
Q Consensus 149 ~i~~~-~-------~~~~~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~~~~~~ 202 (204)
+++|. + +++|+++|+.++||+|+||.|++|++++..+. ++++|++++++.-.++
T Consensus 189 ~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~l~~L~k~v~~~~~~~ 251 (255)
T 2e3n_A 189 LVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKREYPKFLKRFTSYVQEKTAGK 251 (255)
T ss_dssp EEC---CCCCCCGGGEEEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred EECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
T ss_conf 850478875335689858999999867897567999999986255099999999999862389
No 9
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=214.33 Aligned_cols=178 Identities=15% Similarity=0.258 Sum_probs=151.0
Q ss_pred CCCCCCEE--CCCCEEEEEEEEEEECCCCCCEEEEEEEEEEECCCHHHHHHHHHCCCCCCCCHHHCCCEEEEEEECCCEE
Q ss_conf 89999377--1799089999834302368963499999997039989999998535641451020312043234168706
Q 028749 6 PCSRSWSI--SEDSLRRYVHFAKISKRRSGSLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLS 83 (204)
Q Consensus 6 ~~~~~Wk~--~~~gv~vy~~~~~~~~~~~~~~~~~k~~~~i~~~~~~~v~~~l~d~e~r~~wd~~~~~~~~l~~~~~~~~ 83 (204)
++.+||++ +++|+++|++.. . +...||+++++ ++|++.+++++.|.+.|++||+++.++++|++++++ .
T Consensus 63 ~~~~gW~~~~~~~gv~Vy~~~~------~-~~l~~k~~~~v-~~~~~~v~~~L~D~~~R~~WD~~~~~~~vle~id~~-~ 133 (258)
T 3fo5_A 63 VAKDNWVLSSEISQVRLYTLED------D-KFLSFHMEMVV-HVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVDED-D 133 (258)
T ss_dssp HTCSCCEEEEEETTEEEEEEEC------S-SCEEEEEEEEE-SSCHHHHHHHHHCGGGGGGTCTTCCEEEEEEEEETT-E
T ss_pred HCCCCCEEEECCCCEEEEEEEC------C-CCEEEEEEEEE-ECCHHHHHHHHHCCHHHHHHHHHCCEEEEEEECCCC-E
T ss_conf 1658988985079969999978------9-96399999999-099999999884911676760540479999990899-5
Q ss_pred EEEEEECCCCCC-C-CCCCEEEEEEEEEE-ECCCE-EEEEEECCCCCCCCCCCCCCCCCEEEEEECEEEEEEECCCCCEE
Q ss_conf 999996078898-6-26980399999999-17984-99999615753125999998992889997127999982899469
Q 028749 84 IIRLRFGEHSKP-L-FRNREFIVYERRET-MEDGT-LVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCM 159 (204)
Q Consensus 84 i~~~~~~~~~~p-~-v~~RDfv~~~~~~~-~~~g~-~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~ 159 (204)
++|... .+.+ + +++||||+++++.. .++|. ++++.+|+ .||.+|+.+|+|||+++.+||+|+|++++.|+
T Consensus 134 ivY~~~--~p~~~~~v~~RDFV~lr~~r~~~~~G~~yvi~~~SV----~hp~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~ 207 (258)
T 3fo5_A 134 AIYHVT--SPALGGHTKPQDFVILASRRKPCDNGDPYVIALRSV----TLPTHRETPEYRRGETLCSGFCLWREGDQLTK 207 (258)
T ss_dssp EEEEEE--ECCCTTCSSCEEEEEEEEEECCSSTTCCEEEEEEEE----ECTTSCCCTTSEECCCSSEEEEEEEEETTEEE
T ss_pred EEEEEE--CCCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEEEC----CCCCCCCCCCCEEEEECCCEEEEEECCCCCEE
T ss_conf 999990--487667889977999999971068999799999963----27889999997988971768999987999889
Q ss_pred EEEEEEECCCCCCCHHHHHHHH-HHHHH-HHHHHHHHHHHCC
Q ss_conf 9999923489992189999887-67789-9999999988489
Q 028749 160 VTYVVQLDPAGWVPKCFVNRLN-TKLVM-IIENLRKLAQACP 199 (204)
Q Consensus 160 v~~~~~~D~~G~iP~~l~~~~~-~~~~~-~~~~l~k~~~~~~ 199 (204)
|+|+.|+||| .+|.|++|... ...+. ++++++++++..-
T Consensus 208 VtY~~q~dpG-~lP~~~~n~~g~s~~~~~t~~~~~~fl~~~~ 248 (258)
T 3fo5_A 208 VSYYNQATPG-VLNYVTTNVAGLSSEFYTTFKACEQFLLDNR 248 (258)
T ss_dssp EEEEESCCGG-GHHHHHHHHHTSCCHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEECCC-CCCCEEEECCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9999940888-7771578345366679999999999998646
No 10
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=1.00 E-value=1 Score=70.08 Aligned_cols=139 Identities=18% Similarity=0.215 Sum_probs=100.0
Q ss_pred EEEEEEEEEECCCHHHHHHHHHCCCCCCCCHHHCCCEEEEEEECC---CEEEEEEEECCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 499999997039989999998535641451020312043234168---70699999607889862698039999999917
Q 028749 36 HTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLED---NLSIIRLRFGEHSKPLFRNREFIVYERRETME 112 (204)
Q Consensus 36 ~~~k~~~~i~~~~~~~v~~~l~d~e~r~~wd~~~~~~~~l~~~~~---~~~i~~~~~~~~~~p~v~~RDfv~~~~~~~~~ 112 (204)
..+..+..| ++|++++++++.|++.+++|.|.|.+++++++-++ +......... ..+ +. +.|...... .+
T Consensus 2 ~~~~~s~~i-~ap~~~v~~~v~D~~~~p~~~p~~~~~~v~~~~~~~g~~~~~~~~~~~--~~~-~~-~~~~~~v~~--~~ 74 (148)
T 1t17_A 2 HRHVVTKVL-PYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVG--FSF-LR-EKFATRVRR--DK 74 (148)
T ss_dssp CEEEEEEEE-SSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECS--TTS-SC-CEEEEEEEE--ET
T ss_pred CEEEEEEEE-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEEE--ECC-EE-EEEEEEEEE--CC
T ss_conf 879999996-699999999999876677657775845999934888876699999998--513-11-899999998--19
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHH-HHHHH
Q ss_conf 98499999615753125999998992889997127999982899469999992348999218999988767789-99999
Q 028749 113 DGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENL 191 (204)
Q Consensus 113 ~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l 191 (204)
+... +...++ +. |. ..+.+.|.|+|.+++ |+|+|....+++|.++..+++.+...... .++.+
T Consensus 75 ~~~~-i~~~~~----~G---~f-------~~~~g~w~f~~~~~g-t~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~f 138 (148)
T 1t17_A 75 DARS-IDVSLL----YG---PF-------KRLNNGWRFMPEGDA-TRVEFVIEFAFKSALLDAMLAANVDRAAGKLIACF 138 (148)
T ss_dssp TTCE-EEEEES----ST---TS-------SCEEEEEEEEEETTE-EEEEEEEEECCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCE-EEEEEC----CC---CH-------HCCEEEEEEEECCCC-EEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9868-999988----89---81-------206878999978999-19999999997869999999999999999999999
Q ss_pred HHHHHH
Q ss_conf 999884
Q 028749 192 RKLAQA 197 (204)
Q Consensus 192 ~k~~~~ 197 (204)
.+.+++
T Consensus 139 ~~r~~~ 144 (148)
T 1t17_A 139 EARAQQ 144 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
Done!