BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028753
         (204 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native
 pdb|3MFS|A Chain A, Cask-4m Cam Kinase Domain, Amppnp
 pdb|3MFT|A Chain A, Cask-4m Cam Kinase Domain, Mn2+
 pdb|3MFU|A Chain A, Cask-4m Cam Kinase Domain, Amppnp-Mn2+
          Length = 351

 Score = 27.3 bits (59), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 17  VIFLPFVGCLSNDEF--SKSRNHKSIQENLYKMGPQTASHIAVHGLLLWASMGFLTPVGI 74
           ++F+   GCL    F  +K R  + I +  YKM P+  SHI+     L   M  L P   
Sbjct: 222 ILFILLSGCLP---FYGTKERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAER 278

Query: 75  LTI 77
           +T+
Sbjct: 279 ITV 281


>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form
 pdb|3C0G|B Chain B, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form
 pdb|3C0H|A Chain A, Cask Cam-Kinase Domain- Amppnp Complex, P1 Form
 pdb|3C0H|B Chain B, Cask Cam-Kinase Domain- Amppnp Complex, P1 Form
 pdb|3C0I|A Chain A, Cask Cam-Kinase Domain- 3'-Amp Complex, P212121 Form
          Length = 351

 Score = 27.3 bits (59), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 20  LPFVGCLSNDEFSKSRNHKSIQENLYKMGPQTASHIAVHGLLLWASMGFLTPVGILTI 77
           LPF G       +K R  + I +  YKM P+  SHI+     L   M  L P   +T+
Sbjct: 231 LPFYG-------TKERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITV 281


>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX
          Length = 361

 Score = 26.9 bits (58), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 20  LPFVGCLSNDEFSKSRNHKSIQENLYKMGPQTASHIAVHGLLLWASMGFLTPVGILTI 77
           LPF G       +K R  + I +  YKM P+  SHI+     L   M  L P   +T+
Sbjct: 233 LPFYG-------TKERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITV 283


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.141    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,575,953
Number of Sequences: 62578
Number of extensions: 206352
Number of successful extensions: 528
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 5
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.5 bits)