Query 028753
Match_columns 204
No_of_seqs 136 out of 796
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 16:26:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08760 Cyt_b561_FRRS1_like Eu 100.0 4.8E-31 1E-35 218.8 13.3 147 46-197 27-178 (191)
2 smart00665 B561 Cytochrome b-5 99.9 5.3E-27 1.1E-31 183.6 11.6 121 57-181 1-129 (129)
3 PF03188 Cytochrom_B561: Eukar 99.9 4.7E-25 1E-29 173.0 12.5 125 57-183 1-132 (137)
4 cd08554 Cyt_b561 Eukaryotic cy 99.9 1.9E-23 4.1E-28 163.6 11.5 123 55-181 2-131 (131)
5 cd08761 Cyt_b561_CYB561D2_like 99.9 1.8E-22 4E-27 166.7 11.9 132 51-183 17-157 (183)
6 cd08766 Cyt_b561_ACYB-1_like P 99.9 1.2E-21 2.6E-26 157.3 12.0 127 52-183 5-138 (144)
7 cd08765 Cyt_b561_CYBRD1 Verteb 99.8 1E-19 2.2E-24 147.4 12.0 129 53-183 10-145 (153)
8 cd08762 Cyt_b561_CYBASC3 Verte 99.8 1.3E-19 2.8E-24 149.9 12.5 128 54-183 34-168 (179)
9 cd08763 Cyt_b561_CYB561 Verteb 99.8 2.3E-19 5E-24 144.0 12.8 127 53-183 5-138 (143)
10 PLN02351 cytochromes b561 fami 99.8 2.8E-19 6E-24 153.7 13.1 125 54-183 49-180 (242)
11 PLN02810 carbon-monoxide oxyge 99.8 9.5E-19 2.1E-23 149.4 12.4 125 54-183 46-177 (231)
12 PLN02680 carbon-monoxide oxyge 99.8 8.9E-19 1.9E-23 150.1 12.2 126 53-183 45-177 (232)
13 cd08764 Cyt_b561_CG1275_like N 99.8 1.3E-18 2.9E-23 147.7 11.4 127 53-183 22-157 (214)
14 KOG4293 Predicted membrane pro 99.8 5.5E-20 1.2E-24 169.0 -1.8 142 53-196 210-355 (403)
15 KOG1619 Cytochrome b [Energy p 99.7 6.7E-17 1.5E-21 138.3 9.1 130 52-185 52-188 (245)
16 PF10348 DUF2427: Domain of un 99.4 8E-13 1.7E-17 101.0 9.6 86 50-147 13-102 (105)
17 PF13301 DUF4079: Protein of u 97.4 0.0058 1.3E-07 50.8 12.6 88 94-185 81-173 (175)
18 cd08554 Cyt_b561 Eukaryotic cy 96.5 0.013 2.7E-07 45.6 7.3 94 93-188 2-99 (131)
19 PF03188 Cytochrom_B561: Eukar 95.7 0.036 7.9E-07 43.0 6.4 91 52-146 32-131 (137)
20 smart00665 B561 Cytochrome b-5 95.7 0.067 1.4E-06 41.5 7.7 91 95-187 1-96 (129)
21 cd08761 Cyt_b561_CYB561D2_like 95.5 0.066 1.4E-06 44.1 7.6 93 91-185 19-118 (183)
22 cd08760 Cyt_b561_FRRS1_like Eu 95.4 0.12 2.5E-06 42.7 8.8 95 90-187 33-130 (191)
23 cd08763 Cyt_b561_CYB561 Verteb 94.7 0.25 5.4E-06 39.7 8.5 91 92-184 6-100 (143)
24 cd08764 Cyt_b561_CG1275_like N 93.8 0.33 7.1E-06 41.6 7.8 93 91-183 22-118 (214)
25 PF00033 Cytochrom_B_N: Cytoch 93.8 2.1 4.6E-05 34.0 12.3 130 53-183 7-174 (188)
26 PLN02810 carbon-monoxide oxyge 93.4 1.9 4.1E-05 37.5 11.8 132 51-186 76-221 (231)
27 PF00033 Cytochrom_B_N: Cytoch 93.3 0.23 4.9E-06 39.7 5.7 90 94-183 10-127 (188)
28 PLN02680 carbon-monoxide oxyge 93.1 2 4.2E-05 37.4 11.5 128 51-182 76-218 (232)
29 PF10348 DUF2427: Domain of un 93.1 1.6 3.5E-05 33.2 9.8 87 90-183 15-102 (105)
30 cd08762 Cyt_b561_CYBASC3 Verte 92.1 3 6.6E-05 34.9 10.9 92 92-185 34-131 (179)
31 cd08766 Cyt_b561_ACYB-1_like P 92.0 0.67 1.4E-05 37.3 6.7 91 52-146 38-137 (144)
32 COG3038 CybB Cytochrome B561 [ 91.4 2.5 5.4E-05 35.4 9.8 100 93-196 13-122 (181)
33 cd08765 Cyt_b561_CYBRD1 Verteb 91.3 1.1 2.4E-05 36.5 7.4 92 51-146 44-144 (153)
34 PF13172 PepSY_TM_1: PepSY-ass 90.2 0.64 1.4E-05 28.1 3.9 32 154-185 1-32 (34)
35 PLN02351 cytochromes b561 fami 89.2 13 0.00028 32.6 12.7 133 52-189 81-229 (242)
36 PF13301 DUF4079: Protein of u 88.7 1.7 3.7E-05 36.1 6.6 86 98-187 57-142 (175)
37 PRK11513 cytochrome b561; Prov 88.2 5.5 0.00012 32.7 9.4 65 122-186 41-107 (176)
38 KOG1619 Cytochrome b [Energy p 86.9 11 0.00023 33.1 10.6 93 50-146 84-185 (245)
39 TIGR02125 CytB-hydogenase Ni/F 86.7 7.1 0.00015 32.1 9.3 27 159-185 113-139 (211)
40 PF01292 Ni_hydr_CYTB: Prokary 84.9 13 0.00029 29.4 9.9 90 94-185 8-124 (182)
41 PF13706 PepSY_TM_3: PepSY-ass 84.8 1.8 4E-05 26.7 3.7 29 155-183 1-29 (37)
42 PF13703 PepSY_TM_2: PepSY-ass 81.4 12 0.00025 27.1 7.4 30 153-183 56-85 (88)
43 TIGR01583 formate-DH-gamm form 74.3 25 0.00053 29.3 8.4 30 155-184 101-130 (204)
44 PRK10179 formate dehydrogenase 72.0 33 0.00072 29.0 8.8 46 140-185 90-136 (217)
45 PF01292 Ni_hydr_CYTB: Prokary 70.5 51 0.0011 26.0 11.8 125 54-182 6-167 (182)
46 PF01794 Ferric_reduct: Ferric 68.9 9.1 0.0002 28.3 4.2 46 130-176 2-51 (125)
47 CHL00070 petB cytochrome b6 66.2 63 0.0014 27.7 9.3 119 45-186 23-141 (215)
48 PF01578 Cytochrom_C_asm: Cyto 63.4 84 0.0018 25.9 10.2 68 52-119 69-148 (214)
49 PRK10171 hydrogenase 1 b-type 62.7 60 0.0013 27.7 8.6 63 53-116 17-83 (235)
50 PF13630 SdpI: SdpI/YhfL prote 62.2 9.7 0.00021 26.2 3.0 32 153-184 18-49 (76)
51 PRK10639 formate dehydrogenase 60.3 72 0.0016 26.7 8.5 43 141-184 91-133 (211)
52 PF03929 PepSY_TM: PepSY-assoc 59.8 20 0.00044 20.8 3.5 24 159-182 2-25 (27)
53 cd01661 cbb3_Oxidase_I Cytochr 54.6 2E+02 0.0044 27.5 11.7 65 50-117 85-152 (493)
54 PRK03735 cytochrome b6; Provis 53.8 1.1E+02 0.0024 26.3 8.7 111 54-187 40-150 (223)
55 PF10067 DUF2306: Predicted me 53.3 16 0.00035 27.3 3.1 31 155-185 2-32 (103)
56 COG4329 Predicted membrane pro 51.2 21 0.00045 28.8 3.5 79 99-177 64-151 (160)
57 PF10951 DUF2776: Protein of u 46.7 52 0.0011 29.9 5.7 77 97-173 155-240 (347)
58 PF14007 YtpI: YtpI-like prote 45.7 83 0.0018 23.3 5.8 44 128-184 38-81 (89)
59 PF04238 DUF420: Protein of un 45.6 1.5E+02 0.0033 23.4 13.4 106 56-183 6-128 (133)
60 PF13630 SdpI: SdpI/YhfL prote 43.9 61 0.0013 22.1 4.7 29 78-109 12-40 (76)
61 PF01794 Ferric_reduct: Ferric 37.1 96 0.0021 22.6 5.2 13 90-102 108-120 (125)
62 COG3038 CybB Cytochrome B561 [ 36.8 1.5E+02 0.0033 24.7 6.7 66 120-185 6-73 (181)
63 PF14387 DUF4418: Domain of un 36.8 1.1E+02 0.0024 23.9 5.5 86 92-178 31-120 (124)
64 PF14358 DUF4405: Domain of un 36.6 1.3E+02 0.0028 20.1 6.5 48 60-107 7-56 (64)
65 cd00284 Cytochrome_b_N Cytochr 36.3 2.6E+02 0.0056 23.5 9.3 110 53-185 20-129 (200)
66 PRK11513 cytochrome b561; Prov 36.0 1.7E+02 0.0037 23.8 6.9 58 126-183 9-66 (176)
67 PF10002 DUF2243: Predicted me 35.5 2.4E+02 0.0052 22.8 8.8 77 99-175 51-137 (143)
68 PF14358 DUF4405: Domain of un 34.7 1.4E+02 0.0031 19.9 5.5 23 153-175 36-58 (64)
69 TIGR02125 CytB-hydogenase Ni/F 33.6 2.6E+02 0.0057 22.7 12.2 58 125-182 115-189 (211)
70 PF03729 DUF308: Short repeat 33.1 1.4E+02 0.0031 19.5 5.4 67 103-175 3-69 (72)
71 PF12769 DUF3814: Domain of un 32.4 80 0.0017 23.4 3.9 49 95-146 25-76 (87)
72 PF10856 DUF2678: Protein of u 32.2 2E+02 0.0043 22.6 6.1 53 94-146 29-81 (118)
73 COG2717 Predicted membrane pro 31.8 96 0.0021 26.6 4.8 42 56-101 114-155 (209)
74 cd01660 ba3-like_Oxidase_I ba3 31.5 1.9E+02 0.0042 27.4 7.3 63 49-114 42-107 (473)
75 TIGR00780 ccoN cytochrome c ox 31.3 4.7E+02 0.01 25.0 11.4 82 50-135 49-133 (474)
76 PRK10588 hypothetical protein; 30.9 2.4E+02 0.0051 21.4 6.5 72 99-175 17-93 (97)
77 COG3658 Cytochrome b [Energy p 30.8 1E+02 0.0022 25.8 4.6 54 122-175 33-105 (192)
78 PF02628 COX15-CtaA: Cytochrom 30.6 3.7E+02 0.008 23.5 8.7 82 94-178 69-150 (302)
79 COG3671 Predicted membrane pro 30.3 2.8E+02 0.006 21.9 9.5 68 68-147 39-110 (125)
80 PRK10639 formate dehydrogenase 29.5 3.3E+02 0.0072 22.6 9.8 61 122-182 107-173 (211)
81 PF11158 DUF2938: Protein of u 28.1 1.1E+02 0.0024 24.7 4.4 48 127-174 95-148 (150)
82 PF10361 DUF2434: Protein of u 26.6 1.5E+02 0.0033 26.7 5.3 62 123-184 43-112 (296)
83 COG5658 Predicted integral mem 24.3 2.3E+02 0.0049 24.3 5.8 56 129-184 4-71 (204)
84 TIGR02112 cyd_oper_ybgE cyd op 23.7 3.2E+02 0.0069 20.5 6.6 70 100-174 14-88 (93)
85 PRK14759 potassium-transportin 23.6 1.6E+02 0.0034 17.5 3.3 23 128-150 6-28 (29)
86 cd01662 Ubiquinol_Oxidase_I Ub 23.6 2.4E+02 0.0053 26.9 6.5 63 49-115 47-114 (501)
87 COG4244 Predicted membrane pro 21.7 4.6E+02 0.0099 21.6 8.5 90 90-183 45-143 (160)
88 PF09716 ETRAMP: Malarial earl 21.4 2.4E+02 0.0051 20.4 4.7 27 1-28 1-27 (84)
89 PF10856 DUF2678: Protein of u 21.2 86 0.0019 24.6 2.4 51 123-179 28-78 (118)
90 TIGR02891 CtaD_CoxA cytochrome 21.1 2.9E+02 0.0064 26.4 6.5 64 49-114 47-113 (506)
91 PRK05419 putative sulfite oxid 20.7 2E+02 0.0044 24.2 4.8 34 62-99 120-153 (205)
92 COG4097 Predicted ferric reduc 20.7 1.9E+02 0.004 27.4 4.8 54 123-176 38-93 (438)
No 1
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.97 E-value=4.8e-31 Score=218.79 Aligned_cols=147 Identities=32% Similarity=0.496 Sum_probs=131.3
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheec---ccCCC
Q 028753 46 KMGPQTASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRN---FENSF 122 (204)
Q Consensus 46 ~~~~~~~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~---~~~~f 122 (204)
...++.+..+++||++|.+||++++|+|++++|+++.. .+.||++|+.+|+++++++++|+++++.. .++++
T Consensus 27 ~~~~~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~~-----~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~~~~~~~~ 101 (191)
T cd08760 27 SSVGSSDTLIKAHGVLMAIAWGILMPIGALLARYFLLG-----DPVWFYLHAGLQLLAVLLAIAGFVLGIVLVQGGGGSL 101 (191)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 44556678999999999999999999999999997432 25799999999999999999999999987 34679
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhhcCCC--ccceEEEeEE
Q 028753 123 NNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLIK--HQEALRFGLY 197 (204)
Q Consensus 123 ~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~~~~--~~~~i~~~v~ 197 (204)
++.|+++|+++++++++|+++|++||.+..+.|+.|++.|+++|++++++|++|+.+|+.+..++ +.+.+.|++|
T Consensus 102 ~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~G~~~~~~~~~~~~~~~~~~~ 178 (191)
T cd08760 102 NNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFLGLDLAGAGTPKAWKIAYGVV 178 (191)
T ss_pred cCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999988 5666555544
No 2
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=99.94 E-value=5.3e-27 Score=183.62 Aligned_cols=121 Identities=31% Similarity=0.491 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhh-ccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhhHHHH
Q 028753 57 VHGLLLWASMGFLTPVGILTIRM-SNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQRLGL 131 (204)
Q Consensus 57 ~HG~LM~vAw~iL~P~Gil~aR~-~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~~iGl 131 (204)
+||++|.+||++++|.|++.+|+ .+.. ..+.|+++|+.+|.++.+++++|+++++.+.+ ++++++|+++|+
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~----~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl 76 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFL----SKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGL 76 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHH
Confidence 69999999999999999999997 3322 12589999999999999999999999988754 479999999999
Q ss_pred HHHHHHHHHHHHHhccCCCC---CCCcchhHhHHHHHHHHHHHHHHHHHHHhh
Q 028753 132 ALYGALWLQVSIGFFKPPRG---NKRRSMWYVVHWLLGTAISLVGIINIYTGL 181 (204)
Q Consensus 132 ~v~~l~~lQ~l~G~lrp~~~---~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl 181 (204)
+++++..+|++.|+++|.++ .+.|+.++++|+++|++++++|++|+++|+
T Consensus 77 ~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~ 129 (129)
T smart00665 77 AAFVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL 129 (129)
T ss_pred HHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999988765 677999999999999999999999999985
No 3
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=99.93 E-value=4.7e-25 Score=172.97 Aligned_cols=125 Identities=33% Similarity=0.499 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhhHHHHH
Q 028753 57 VHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQRLGLA 132 (204)
Q Consensus 57 ~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~~iGl~ 132 (204)
+||++|.+||++++|.|++.+|+.+ ..+ ...+.|+++|+.+|.++++++++|+++++.+.+ +++++.|+++|++
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~-~~~-~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~ 78 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNP-FRR-KSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLA 78 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhh-hcc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHH
Confidence 6999999999999999999999743 111 123679999999999999999999999988754 5799999999999
Q ss_pred HHHHHHHHHHHHhccC---CCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753 133 LYGALWLQVSIGFFKP---PRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA 183 (204)
Q Consensus 133 v~~l~~lQ~l~G~lrp---~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~ 183 (204)
+++++++|++.|++++ ..+++.|+.+++.|+++|++++++|++|+.+|+..
T Consensus 79 ~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~~ 132 (137)
T PF03188_consen 79 TFVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLTE 132 (137)
T ss_pred HHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998754 44556788999999999999999999999999953
No 4
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=99.90 E-value=1.9e-23 Score=163.58 Aligned_cols=123 Identities=29% Similarity=0.370 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhhHHH
Q 028753 55 IAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQRLG 130 (204)
Q Consensus 55 ~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~~iG 130 (204)
+++|+++|.+||++++|.|++.+|+.+... .+.|+++|+.+|.++.+++++|+++++.+.+ +++++.|+++|
T Consensus 2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~----~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lG 77 (131)
T cd08554 2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLT----KRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLG 77 (131)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhccccccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHH
Confidence 468999999999999999999999986542 2579999999999999999999999988752 36999999999
Q ss_pred HHHHHHHHHHHHHHhcc---CCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhh
Q 028753 131 LALYGALWLQVSIGFFK---PPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGL 181 (204)
Q Consensus 131 l~v~~l~~lQ~l~G~lr---p~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl 181 (204)
++++++.++|++.|+.+ |.+..+.|+.+++.|+++|+++++++++|+++|+
T Consensus 78 l~~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~ 131 (131)
T cd08554 78 LATVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI 131 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999765 4443345889999999999999999999999884
No 5
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.88 E-value=1.8e-22 Score=166.74 Aligned_cols=132 Identities=24% Similarity=0.288 Sum_probs=111.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChh
Q 028753 51 TASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNH 126 (204)
Q Consensus 51 ~~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H 126 (204)
...++++||++|.++|++++|.|++..|-.....+ ...+.|+++|+.+|.+++.++++|+.+.+.+.+ ++|++.|
T Consensus 17 ~~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~-~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H 95 (183)
T cd08761 17 GTSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTK-LARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWH 95 (183)
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHhcCCCCcch-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchh
Confidence 34689999999999999999999998664333221 123578999999999999999999998887643 4799999
Q ss_pred hHHHHHHHHHHHHHHHHHhcc---CCCC--CCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753 127 QRLGLALYGALWLQVSIGFFK---PPRG--NKRRSMWYVVHWLLGTAISLVGIINIYTGLKA 183 (204)
Q Consensus 127 ~~iGl~v~~l~~lQ~l~G~lr---p~~~--~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~ 183 (204)
+++|+++++++++|++.|+.+ |... .++|+.++++|+++|++++++|++|+.+|++.
T Consensus 96 ~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~ 157 (183)
T cd08761 96 GILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLET 157 (183)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999853 3222 25788899999999999999999999999987
No 6
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.87 E-value=1.2e-21 Score=157.28 Aligned_cols=127 Identities=25% Similarity=0.337 Sum_probs=112.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhh
Q 028753 52 ASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQ 127 (204)
Q Consensus 52 ~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~ 127 (204)
..++++|+.+|.+++.++++.|++..|..+..+ +.+..+|+.+|.+|.+++++|++..+.+.+ +++++.|+
T Consensus 5 ~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~k-----~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHS 79 (144)
T cd08766 5 GLIFNVHPVLMVIGFIFLAGEAILAYKTVPGSR-----EVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHS 79 (144)
T ss_pred cceeeccHHHHHHHHHHHHHHHHHHhhcccccc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHH
Confidence 368899999999999999999999999765321 457889999999999999999999988754 36999999
Q ss_pred HHHHHHHHHHHHHHHHHh---ccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753 128 RLGLALYGALWLQVSIGF---FKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA 183 (204)
Q Consensus 128 ~iGl~v~~l~~lQ~l~G~---lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~ 183 (204)
++|++++++..+|.+.|+ +.|....+.|+...++|+.+|+++++++++++.+|+..
T Consensus 80 wlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~lGl~e 138 (144)
T cd08766 80 WLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAETGLLE 138 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999995 57876666788889999999999999999999999975
No 7
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=99.82 E-value=1e-19 Score=147.40 Aligned_cols=129 Identities=19% Similarity=0.235 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhhH
Q 028753 53 SHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQR 128 (204)
Q Consensus 53 ~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~~ 128 (204)
..+++|+.+|.+++.+++..+|++.|..+..+.. .+.+..+|+.+|.++.+++++|+...+.+.+ .++++.|++
T Consensus 10 ~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~--k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fySlHSw 87 (153)
T cd08765 10 AEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCS--KLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMYSLHSW 87 (153)
T ss_pred CeeechHHHHHHHHHHHHHHHHHHhccccccccc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHH
Confidence 3789999999999999999999999965443221 1456889999999999999999998888643 379999999
Q ss_pred HHHHHHHHHHHHHHHHh---ccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753 129 LGLALYGALWLQVSIGF---FKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA 183 (204)
Q Consensus 129 iGl~v~~l~~lQ~l~G~---lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~ 183 (204)
+|++++++..+|.+.|+ +.|......|+...++|+.+|+.+++++++++.+|+..
T Consensus 88 lGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~e 145 (153)
T cd08765 88 VGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMGITE 145 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999995 47776556788889999999999999999999999975
No 8
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.82 E-value=1.3e-19 Score=149.88 Aligned_cols=128 Identities=19% Similarity=0.249 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhhHH
Q 028753 54 HIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQRL 129 (204)
Q Consensus 54 ~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~~i 129 (204)
.+++|+++|.+++.+++..|++..|..++.... .+.|+.+|..+|.+|.+++++|+...++..+ +++++.|+++
T Consensus 34 ~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~--k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWl 111 (179)
T cd08762 34 NFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGP--KLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWV 111 (179)
T ss_pred ceeehHHHHHHHHHHHHHHHHHhhccccccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHH
Confidence 689999999999999999999999976653211 1457899999999999999999999998765 3689999999
Q ss_pred HHHHHHHHHHHHHHHh---ccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753 130 GLALYGALWLQVSIGF---FKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA 183 (204)
Q Consensus 130 Gl~v~~l~~lQ~l~G~---lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~ 183 (204)
|++++++..+|.+.|+ +.|..+.+.|....++|+.+|+.+++++++++.+|+..
T Consensus 112 Gl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lGl~e 168 (179)
T cd08762 112 GICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIASCISGINE 168 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999996 45655556788889999999999999999999999976
No 9
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.82 E-value=2.3e-19 Score=143.96 Aligned_cols=127 Identities=24% Similarity=0.334 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhhH
Q 028753 53 SHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQR 128 (204)
Q Consensus 53 ~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~~ 128 (204)
.++++|+++|.+++.+++..|+++.|..+.... +....+|+.+|.++.+++++|+...+.+.+ +++++.|++
T Consensus 5 ~~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k----~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHsw 80 (143)
T cd08763 5 LQFNVHPLCMVLGLVFLCGEALLVYRVFRNETK----RSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSW 80 (143)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcccccccc----chhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHH
Confidence 389999999999999999999999997654321 345779999999999999999998887643 379999999
Q ss_pred HHHHHHHHHHHHHHHHh---ccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753 129 LGLALYGALWLQVSIGF---FKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA 183 (204)
Q Consensus 129 iGl~v~~l~~lQ~l~G~---lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~ 183 (204)
+|++++++..+|.+.|+ +.|....+.|..++++|+.+|+.+++++++++.+|+..
T Consensus 81 lGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG~~e 138 (143)
T cd08763 81 CGILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLGLTE 138 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999995 57876677789999999999999999999999999965
No 10
>PLN02351 cytochromes b561 family protein
Probab=99.81 E-value=2.8e-19 Score=153.71 Aligned_cols=125 Identities=20% Similarity=0.205 Sum_probs=108.7
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc---CCCCChhhHH
Q 028753 54 HI-AVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE---NSFNNNHQRL 129 (204)
Q Consensus 54 ~~-~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~---~~f~~~H~~i 129 (204)
.+ ++|+.+|.+++.++++.||+++|..|..+ +.|+.+|..+|.+|++++++|+...+.+.+ +++++.|+++
T Consensus 49 iffn~HP~lMviGfi~L~geAILvYR~~~~~~-----k~~K~lH~~Lh~~Ali~~vvGl~a~fh~~~~~i~nlySLHSWl 123 (242)
T PLN02351 49 VYAVLHPLLMVIGFILISGEAILVHRWLPGSR-----KTKKSVHLWLQGLALASGVFGIWTKFHGQDGIVANFYSLHSWM 123 (242)
T ss_pred eeecccHHHHHHHHHHHHHHHHHHhhcccccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHH
Confidence 44 69999999999999999999999886421 358999999999999999999998433322 4689999999
Q ss_pred HHHHHHHHHHHHHHHh---ccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753 130 GLALYGALWLQVSIGF---FKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA 183 (204)
Q Consensus 130 Gl~v~~l~~lQ~l~G~---lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~ 183 (204)
|++++++..+|.+.|+ +.|......|....++|..+|+.+++++++++.+|+..
T Consensus 124 Gl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~E 180 (242)
T PLN02351 124 GLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLE 180 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999996 46666566788889999999999999999999999987
No 11
>PLN02810 carbon-monoxide oxygenase
Probab=99.79 E-value=9.5e-19 Score=149.41 Aligned_cols=125 Identities=19% Similarity=0.303 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhhHH
Q 028753 54 HIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQRL 129 (204)
Q Consensus 54 ~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~~i 129 (204)
.+++|+++|.+++.+++..||+..|..+..+ +.++.+|+.+|.+|.+++++|....+...| +++++.|+|+
T Consensus 46 ~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k-----~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWl 120 (231)
T PLN02810 46 IFNLHPVLMLIGLIIIGGEAIMSYKSLPLKK-----EVKKLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSWL 120 (231)
T ss_pred eeeehHHHHHHHHHHHhhHHHHHhhcccccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHHH
Confidence 6889999999999999999999999876432 346789999999999999999999998765 3699999999
Q ss_pred HHHHHHHHHHHHHHHh---ccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753 130 GLALYGALWLQVSIGF---FKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA 183 (204)
Q Consensus 130 Gl~v~~l~~lQ~l~G~---lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~ 183 (204)
|++++.+..+|.+.|+ +.|......|....++|..+|..+++++++++.+|+..
T Consensus 121 Gl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~E 177 (231)
T PLN02810 121 GIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLE 177 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997 67887777888889999999999999999999999976
No 12
>PLN02680 carbon-monoxide oxygenase
Probab=99.79 E-value=8.9e-19 Score=150.13 Aligned_cols=126 Identities=22% Similarity=0.327 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhhH
Q 028753 53 SHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQR 128 (204)
Q Consensus 53 ~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~~ 128 (204)
.++++|+++|.+++.+++..+++..|..+..+ +.+..+|+.+|.++.+++++|+...++..+ .++++.|++
T Consensus 45 ~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~k-----~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSW 119 (232)
T PLN02680 45 LIFNVHPVLMVIGLVLLNGEAMLAYKTVPGTK-----NLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSW 119 (232)
T ss_pred ceEechHHHHHHHHHHHHHHHHhccccccccc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHHH
Confidence 57889999999999999999999988765422 356789999999999999999999888754 379999999
Q ss_pred HHHHHHHHHHHHHHHHh---ccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753 129 LGLALYGALWLQVSIGF---FKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA 183 (204)
Q Consensus 129 iGl~v~~l~~lQ~l~G~---lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~ 183 (204)
+|++++++..+|.+.|+ +.|....+.|+...++|+.+|+.+++++++++.+|+..
T Consensus 120 lGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~E 177 (232)
T PLN02680 120 LGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGILE 177 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999995 57776556677778999999999999999999999976
No 13
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.78 E-value=1.3e-18 Score=147.75 Aligned_cols=127 Identities=23% Similarity=0.321 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc------CCCCChh
Q 028753 53 SHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE------NSFNNNH 126 (204)
Q Consensus 53 ~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~------~~f~~~H 126 (204)
..+++|+++|.+++.+++..|+++.|..+..+ + +.++.+|..+|.+|.+++++|+...+...| +++++.|
T Consensus 22 ~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~-k---~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlH 97 (214)
T cd08764 22 LQFNWHPLLMVLGLIFLYGNSILVYRVFRNTR-K---KRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLH 97 (214)
T ss_pred ceEeecHHHHHHHHHHHHHHHHHHhccCcccc-c---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchH
Confidence 46899999999999999999999999887532 1 346789999999999999999988766432 3789999
Q ss_pred hHHHHHHHHHHHHHHHHHh---ccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753 127 QRLGLALYGALWLQVSIGF---FKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA 183 (204)
Q Consensus 127 ~~iGl~v~~l~~lQ~l~G~---lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~ 183 (204)
+++|++++++..+|.+.|+ +.|......|+...++|+.+|+.+++++++++.+|+..
T Consensus 98 SwlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~e 157 (214)
T cd08764 98 SWLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITE 157 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999996 57765555677778899999999999999999999977
No 14
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=99.75 E-value=5.5e-20 Score=169.04 Aligned_cols=142 Identities=25% Similarity=0.402 Sum_probs=127.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecccC---CCCChhhHH
Q 028753 53 SHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFEN---SFNNNHQRL 129 (204)
Q Consensus 53 ~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~~---~f~~~H~~i 129 (204)
.....||+++..+|++++|+|++.+||+|..+. +.+.|||.|+.+|..++++.+.|++.+.+..++ .-...|..+
T Consensus 210 ~~~~~hgil~~~sw~il~p~g~i~ary~~~~~~--~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~h~~~ 287 (403)
T KOG4293|consen 210 KLRMTHGILNALSWGILFPAGAIIARYLRQKPS--GDPTWFYIHRACQFTGFILGVAGFVDGLKLSNESDGTVYSAHTDL 287 (403)
T ss_pred hccccHHHHhhhhhheeccccceeEEEecccCC--CCcchhhhhhhheeeEEEEEeeeeeeeEEEccCCCceeeeecccc
Confidence 334449999999999999999999999998744 457899999999999988889999998888654 357899999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhhcCCCccce-EEEeE
Q 028753 130 GLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLIKHQEA-LRFGL 196 (204)
Q Consensus 130 Gl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~~~~~~~~-i~~~v 196 (204)
|+.+.++..+|++..++||.+.++.|+.||++|+..|+...++|++|++.|+.+++....|. +.|+.
T Consensus 288 G~~~~~l~~lQ~~~~l~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l~~~~~~w~~~~~~~ 355 (403)
T KOG4293|consen 288 GIILLVLAFLQPLALLLRPLPESKIRRYWNWYHHLVGRLSIILGIVNIFDGLELLYPGQSWIKLGYGS 355 (403)
T ss_pred hhHHHHHHHHHHHHHHhcCCcccCceeccceeeeecCcceeeehhhHHhhhHhhhcCCCceEEeeeee
Confidence 99999999999999999999999999999999999999999999999999999998888776 55553
No 15
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=99.69 E-value=6.7e-17 Score=138.30 Aligned_cols=130 Identities=27% Similarity=0.367 Sum_probs=114.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhh
Q 028753 52 ASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQ 127 (204)
Q Consensus 52 ~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~ 127 (204)
...+++|+++|.++|.++.-.++++.|.+|..+. +.-+-+|..+|+.|..++++|+...+...+ .+|++.|+
T Consensus 52 ~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~~k----~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHS 127 (245)
T KOG1619|consen 52 NKEFNLHPVLMVIGFIYLQGEAILIYRVFRYTSK----KVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHS 127 (245)
T ss_pred chhcCcchHHHHHHHHHhccceeeeeehhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHH
Confidence 3567799999999999999999999999775432 344678999999999999999998888754 36999999
Q ss_pred HHHHHHHHHHHHHHHHHh---ccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028753 128 RLGLALYGALWLQVSIGF---FKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYL 185 (204)
Q Consensus 128 ~iGl~v~~l~~lQ~l~G~---lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~~ 185 (204)
|+|+.++++..+|.+.|+ +.|.-+.+.|....++|+.+|..+++++++|+.+|+....
T Consensus 128 WlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~ek~ 188 (245)
T KOG1619|consen 128 WLGLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGLLEKL 188 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999996 5777777899999999999999999999999999995543
No 16
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=99.44 E-value=8e-13 Score=101.03 Aligned_cols=86 Identities=22% Similarity=0.350 Sum_probs=75.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecccCC----CCCh
Q 028753 50 QTASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENS----FNNN 125 (204)
Q Consensus 50 ~~~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~~~----f~~~ 125 (204)
+.+..+++|+++|.+||.++.|+|+++.+...+ | |...|.++.+++++|+.++....++. ++|.
T Consensus 13 ~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~~sr---------~---~~~~q~~~~~l~~~g~~~g~~~~~~~p~lyp~n~ 80 (105)
T PF10348_consen 13 PHRSALYAHIVLMTLAWVILYPIGLVLGNARSR---------W---HLPVQTVFLVLMILGLFLGSVYNGSTPDLYPNNA 80 (105)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHccch---------H---HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCH
Confidence 357899999999999999999999998766532 2 99999999999999999998875432 5899
Q ss_pred hhHHHHHHHHHHHHHHHHHhcc
Q 028753 126 HQRLGLALYGALWLQVSIGFFK 147 (204)
Q Consensus 126 H~~iGl~v~~l~~lQ~l~G~lr 147 (204)
|.++|++++.++.+|++.|+++
T Consensus 81 H~k~g~il~~l~~~q~~~gv~~ 102 (105)
T PF10348_consen 81 HGKMGWILFVLMIVQVILGVIL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 17
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=97.36 E-value=0.0058 Score=50.78 Aligned_cols=88 Identities=19% Similarity=0.201 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHh---hheeccc-CCCCChhhHHHHHHHHHHHHHHHHHh-ccCCCCCCCcchhHhHHHHHHHH
Q 028753 94 YLHIILQMLSVVLATVGAI---MSIRNFE-NSFNNNHQRLGLALYGALWLQVSIGF-FKPPRGNKRRSMWYVVHWLLGTA 168 (204)
Q Consensus 94 ~~H~~lq~~av~laiiG~i---l~i~~~~-~~f~~~H~~iGl~v~~l~~lQ~l~G~-lrp~~~~~~R~~~~~~H~~lG~~ 168 (204)
..|.-.-...+.+...|.. .+....+ +-|.++|-+.|+++.+++.++....- +.+ .+++.+...|..++.+
T Consensus 81 ~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~~lf~spH~~~Gl~~~~L~~~s~al~~~i~~----g~~~~~R~lHi~lN~~ 156 (175)
T PF13301_consen 81 DRHYRLGFALLAFMGLGALGGQLGTYRQNGKLFWSPHLWAGLAVVGLMAFSAALVPQIQK----GNRPWARRLHIYLNSL 156 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHHHHcCCCCccCchHHHHHHHHHHHHHHHHHHHHHcc----CCchhHHHHHHHHHHH
Confidence 5576555544444333333 3333333 34899999999999999999987653 321 2255777899999999
Q ss_pred HHHHHHHHHHHhhhhcC
Q 028753 169 ISLVGIINIYTGLKAYL 185 (204)
Q Consensus 169 ~~~Lgivni~~Gl~~~~ 185 (204)
+.++=.+|..+|.+...
T Consensus 157 ~l~Lf~~q~itG~~ill 173 (175)
T PF13301_consen 157 ALLLFAWQAITGWRILL 173 (175)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999987643
No 18
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=96.51 E-value=0.013 Score=45.55 Aligned_cols=94 Identities=19% Similarity=0.242 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHH
Q 028753 93 VYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTA 168 (204)
Q Consensus 93 f~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~ 168 (204)
|..|..+|.++..+...-.++...... +.....|..+..+.+.+.++-...++..+. .+.++-++-.|.++|.+
T Consensus 2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~--~~~~~h~~s~Hs~lGl~ 79 (131)
T cd08554 2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHN--AGGIANLYSLHSWLGLA 79 (131)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCcccchhHHHHHHHH
Confidence 346999999998755544444444421 123457999999888888888888876543 23345566789999999
Q ss_pred HHHHHHHHHHHhhhhcCCCc
Q 028753 169 ISLVGIINIYTGLKAYLIKH 188 (204)
Q Consensus 169 ~~~Lgivni~~Gl~~~~~~~ 188 (204)
++++...|...|+..+-.++
T Consensus 80 ~~~l~~~q~~~G~~~~~~~~ 99 (131)
T cd08554 80 TVLLFLLQFLSGFVLFLLPL 99 (131)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 99999999999988764333
No 19
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=95.72 E-value=0.036 Score=42.95 Aligned_cols=91 Identities=19% Similarity=0.231 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecc-----cC----CC
Q 028753 52 ASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNF-----EN----SF 122 (204)
Q Consensus 52 ~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~-----~~----~f 122 (204)
+..+++|..++.+|.....-..++... .+...+. +.+...|..+-.++.++.+.=.+.|+... ++ .+
T Consensus 32 ~~~~~~H~~lq~l~~~~~~~G~~~~~~-~~~~~~~---~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~ 107 (137)
T PF03188_consen 32 KWWFRIHWILQVLALVFAIIGFVAIFI-NKNRNGK---PHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIW 107 (137)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH-hccccCC---CCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHH
Confidence 467899999999998776544444433 3332211 22345698888887777666665555431 11 24
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhc
Q 028753 123 NNNHQRLGLALYGALWLQVSIGFF 146 (204)
Q Consensus 123 ~~~H~~iGl~v~~l~~lQ~l~G~l 146 (204)
...|..+|.+++++.+.+...|+.
T Consensus 108 ~~~H~~~G~~~~~l~~~~i~~G~~ 131 (137)
T PF03188_consen 108 NKWHRWLGYLIYVLAIATIFLGLT 131 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999984
No 20
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=95.68 E-value=0.067 Score=41.48 Aligned_cols=91 Identities=19% Similarity=0.149 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHhhheec-c----cCCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHHH
Q 028753 95 LHIILQMLSVVLATVGAIMSIRN-F----ENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAI 169 (204)
Q Consensus 95 ~H~~lq~~av~laiiG~il~i~~-~----~~~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~~ 169 (204)
+|..+|+++..+..--.++.... . ++.....|..+..+.+.+.++-...++...+. +.++-++-.|.++|.++
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~--~~~~~~~s~H~~lGl~~ 78 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNE--SGIANFYSLHSWLGLAA 78 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCCccchhHHHHHHH
Confidence 38889999886544333333332 1 12245679999998888888877777765332 23455777899999999
Q ss_pred HHHHHHHHHHhhhhcCCC
Q 028753 170 SLVGIINIYTGLKAYLIK 187 (204)
Q Consensus 170 ~~Lgivni~~Gl~~~~~~ 187 (204)
+++...|...|+..+..+
T Consensus 79 ~~l~~~Q~~~G~~~~~~~ 96 (129)
T smart00665 79 FVLAGLQWLSGFLRPLPP 96 (129)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999876554
No 21
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.52 E-value=0.066 Score=44.07 Aligned_cols=93 Identities=14% Similarity=0.176 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhheecc------c-CCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHH
Q 028753 91 VFVYLHIILQMLSVVLATVGAIMSIRNF------E-NSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHW 163 (204)
Q Consensus 91 ~Wf~~H~~lq~~av~laiiG~il~i~~~------~-~~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~ 163 (204)
..|..|..+|.++..+.....++.+... + +.-...|..+....+.+.++-....+..++ .+.++-++-.|.
T Consensus 19 ~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~--~~~~~hf~s~H~ 96 (183)
T cd08761 19 SLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKE--RNGKPHFTSWHG 96 (183)
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCCccchhH
Confidence 4688999999999887776666655432 1 123578999999888887766665554322 234556677899
Q ss_pred HHHHHHHHHHHHHHHHhhhhcC
Q 028753 164 LLGTAISLVGIINIYTGLKAYL 185 (204)
Q Consensus 164 ~lG~~~~~Lgivni~~Gl~~~~ 185 (204)
++|..+.++...|...|+....
T Consensus 97 ~lGl~~~~l~~~Q~~~G~~~~~ 118 (183)
T cd08761 97 ILGLVTVILIVLQALGGLALLY 118 (183)
T ss_pred HHHHHHHHHHHHHHHHhHHHHh
Confidence 9999999999999999996543
No 22
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.44 E-value=0.12 Score=42.70 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHhhhee--cccCCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHH
Q 028753 90 RVFVYLHIILQMLSVVLAT-VGAIMSIR--NFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLG 166 (204)
Q Consensus 90 ~~Wf~~H~~lq~~av~lai-iG~il~i~--~~~~~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG 166 (204)
+..++.|..+|.++..+.. +|..++-. ..++.....|..+=++.+++.++-...|+... ...++..+-.|.++|
T Consensus 33 ~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~---~~~~~~~~~~H~~lG 109 (191)
T cd08760 33 DTLIKAHGVLMAIAWGILMPIGALLARYFLLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV---QGGGGSLNNAHAILG 109 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCCcCcchhhh
Confidence 4568899999999877654 45444332 12233456899988888888888888887653 234555678999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCC
Q 028753 167 TAISLVGIINIYTGLKAYLIK 187 (204)
Q Consensus 167 ~~~~~Lgivni~~Gl~~~~~~ 187 (204)
.++.++.++|...|+-.....
T Consensus 110 l~~~~l~~lQ~~~G~~~~~~~ 130 (191)
T cd08760 110 IIVLALAILQPLLGLLRPHPG 130 (191)
T ss_pred HHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999665443
No 23
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=94.73 E-value=0.25 Score=39.74 Aligned_cols=91 Identities=15% Similarity=0.127 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhheeccc----CCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHH
Q 028753 92 FVYLHIILQMLSVVLATVGAIMSIRNFE----NSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGT 167 (204)
Q Consensus 92 Wf~~H~~lq~~av~laiiG~il~i~~~~----~~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~ 167 (204)
-|..|..+|++|.++...-.++...... +.-...|..++++.+.+..+-...-+..+.. ...+-.+-.|-|+|.
T Consensus 6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~--~~~~hf~SlHswlGl 83 (143)
T cd08763 6 QFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQA--NGYPDMYSLHSWCGI 83 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCccccHHHHHHH
Confidence 4889999999999987666666665432 1234689999999888887766665544332 235566779999999
Q ss_pred HHHHHHHHHHHHhhhhc
Q 028753 168 AISLVGIINIYTGLKAY 184 (204)
Q Consensus 168 ~~~~Lgivni~~Gl~~~ 184 (204)
+++++=..|...|+..+
T Consensus 84 ~t~~L~~lQ~~~G~~~f 100 (143)
T cd08763 84 LTFVLYFLQWLIGFSFF 100 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998765
No 24
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=93.83 E-value=0.33 Score=41.64 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeccc--CC--CCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHH
Q 028753 91 VFVYLHIILQMLSVVLATVGAIMSIRNFE--NS--FNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLG 166 (204)
Q Consensus 91 ~Wf~~H~~lq~~av~laiiG~il~i~~~~--~~--f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG 166 (204)
..|..|..+|.++.++...=.++.+.... ++ -.-.|..+....+++.++-...-+-.+...++..+-..-.|.|+|
T Consensus 22 ~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlG 101 (214)
T cd08764 22 LQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLG 101 (214)
T ss_pred ceEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHH
Confidence 46999999999999775555556655432 11 234899999988888777654444333333234455566899999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 028753 167 TAISLVGIINIYTGLKA 183 (204)
Q Consensus 167 ~~~~~Lgivni~~Gl~~ 183 (204)
..++++=..|...|+..
T Consensus 102 l~t~~L~~lQ~~~Gf~~ 118 (214)
T cd08764 102 LTAVILFSLQWVGGFVS 118 (214)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999854
No 25
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=93.82 E-value=2.1 Score=34.03 Aligned_cols=130 Identities=17% Similarity=0.158 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhhcccc-ccchhhhHHHHHHHHHHHHHHHHHHHHHhhheec--------------
Q 028753 53 SHIAVHGLLLWASMGFLTPVGILTIRMSNKV-DSVIKARVFVYLHIILQMLSVVLATVGAIMSIRN-------------- 117 (204)
Q Consensus 53 ~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~-~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~-------------- 117 (204)
.....| +++++++.++...|..+....+.. ......+..+.+|..+-.+-.++.+.=+...+..
T Consensus 7 ~~R~~H-w~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T PF00033_consen 7 FTRLLH-WLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQI 85 (188)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHH
Confidence 345566 478888999999999875321110 0111345678899888776555444444433333
Q ss_pred ----c--------cCCCCChhhHHHHHHHHHHHHHHHHHhcc-----CCC------CCCCcchhHhHHHHHHHHHHHHHH
Q 028753 118 ----F--------ENSFNNNHQRLGLALYGALWLQVSIGFFK-----PPR------GNKRRSMWYVVHWLLGTAISLVGI 174 (204)
Q Consensus 118 ----~--------~~~f~~~H~~iGl~v~~l~~lQ~l~G~lr-----p~~------~~~~R~~~~~~H~~lG~~~~~Lgi 174 (204)
. .+.++...+..-++++.++..+++.|+.. ... ....+.....+|.+.+.++..+-.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~ 165 (188)
T PF00033_consen 86 PQYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFII 165 (188)
T ss_dssp HHHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 12356678888889999999999999866 111 112356678999999999887777
Q ss_pred HHHHHhhhh
Q 028753 175 INIYTGLKA 183 (204)
Q Consensus 175 vni~~Gl~~ 183 (204)
+=++.++..
T Consensus 166 ~Hi~~a~~~ 174 (188)
T PF00033_consen 166 IHIYAAIFH 174 (188)
T ss_dssp HHHHHHHHB
T ss_pred HHHHHHHHH
Confidence 767665543
No 26
>PLN02810 carbon-monoxide oxygenase
Probab=93.42 E-value=1.9 Score=37.46 Aligned_cols=132 Identities=16% Similarity=0.099 Sum_probs=88.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecc-----c---C-C
Q 028753 51 TASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNF-----E---N-S 121 (204)
Q Consensus 51 ~~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~-----~---~-~ 121 (204)
++....+|..+..+|...- -+|+..+--.++..+. +.-+-+|..+-+.++++...=.+.|+..+ . | .
T Consensus 76 k~~~K~iH~~lh~~Al~l~-vvGl~Avf~~Hn~~~i---~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~ 151 (231)
T PLN02810 76 KEVKKLIHLVLHAIALILG-IFGICAAFKNHNESGI---ANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPGGSTNLRSG 151 (231)
T ss_pred cchHHHHHHHHHHHHHHHH-HHHHHHHHHhccccCC---CceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence 3567889999999998654 5666655444443221 34567899998888887666666666331 1 1 2
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhccC-----CCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 028753 122 FNNNHQRLGLALYGALWLQVSIGFFKP-----PRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLI 186 (204)
Q Consensus 122 f~~~H~~iGl~v~~l~~lQ~l~G~lrp-----~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~~~ 186 (204)
.--.|...|++++.+.+.....|+.-. .++-++.+.-...=..+|.++++.|..-++.-....+.
T Consensus 152 ~lP~Hv~~Gl~if~LAiata~lGi~EKl~Fl~~~~~~~~~~Ea~lvN~~Glliv~fg~~V~~~~~~~~~~ 221 (231)
T PLN02810 152 SLPWHVLFGLFVYILAVGNAALGFLEKLTFLESGGLDKYGSEALLVNFTAIITILYGAFVVLTALAQSPS 221 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCchhhhHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 457899999999999999999996321 11111112223334479999999999888877766554
No 27
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=93.27 E-value=0.23 Score=39.72 Aligned_cols=90 Identities=18% Similarity=0.183 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhee--c--cc----CCCCChhhHHHHHHHHHHHHHHHHHhcc------------------
Q 028753 94 YLHIILQMLSVVLATVGAIMSIR--N--FE----NSFNNNHQRLGLALYGALWLQVSIGFFK------------------ 147 (204)
Q Consensus 94 ~~H~~lq~~av~laiiG~il~i~--~--~~----~~f~~~H~~iGl~v~~l~~lQ~l~G~lr------------------ 147 (204)
-+|+..-.+-.++.+.|+.+... . .+ ....+.|..+|++..++..+..+.++.+
T Consensus 10 ~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (188)
T PF00033_consen 10 LLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYR 89 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhh
Confidence 46887777777777788887643 1 11 1257899999999999999999999888
Q ss_pred CC--CCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753 148 PP--RGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA 183 (204)
Q Consensus 148 p~--~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~ 183 (204)
+. +..+..+.+|...+.....++.+..+...+|+-+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~ 127 (188)
T PF00033_consen 90 LFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM 127 (188)
T ss_dssp TT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1123345567788888888888888888999988
No 28
>PLN02680 carbon-monoxide oxygenase
Probab=93.13 E-value=2 Score=37.40 Aligned_cols=128 Identities=17% Similarity=0.167 Sum_probs=84.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecc-----c---C-C
Q 028753 51 TASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNF-----E---N-S 121 (204)
Q Consensus 51 ~~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~-----~---~-~ 121 (204)
++....+|..+..+|.... -+|+..+-..+...+. +.-.-+|.++-+.++++..+=.+.|+..+ . + .
T Consensus 76 k~~~K~iH~~L~~lA~~l~-vvGl~avfk~hn~~~~---~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~ 151 (232)
T PLN02680 76 KNLKKLVHLTLQFLAFCLS-LIGVWAALKFHNEKGI---DNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRAS 151 (232)
T ss_pred chhHHHHHHHHHHHHHHHH-HHHHHHHHHhccccCc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHH
Confidence 4566779999999998766 5666655444442221 23455899998988887665555555431 1 1 2
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhccC------CCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhh
Q 028753 122 FNNNHQRLGLALYGALWLQVSIGFFKP------PRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLK 182 (204)
Q Consensus 122 f~~~H~~iGl~v~~l~~lQ~l~G~lrp------~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~ 182 (204)
..-.|...|++++.+.+.....|+.-. .+.-+..+.-...=..+|.+++++|..-++.-..
T Consensus 152 ~~p~H~~~G~~if~LaiaT~~lG~~Ek~~f~~~~~~~~~~~~e~~lvN~~gl~~~~fg~~V~~~v~~ 218 (232)
T PLN02680 152 LLPWHVFFGIYIYALAVATATTGILEKATFLQSNKVISRYSTEAMLVNSLGILIVVLGGFVILAIVT 218 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCchhhhHhHHHHHHHHHHHHHHHhhcc
Confidence 456899999999999999999997421 1111111112223347899999999888776665
No 29
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=93.09 E-value=1.6 Score=33.19 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHhhheecccCCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHH
Q 028753 90 RVFVYLHIILQMLSVVLAT-VGAIMSIRNFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTA 168 (204)
Q Consensus 90 ~~Wf~~H~~lq~~av~lai-iG~il~i~~~~~~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~ 168 (204)
+...+.|..+|.++..+.. +|.+++... +++|...=.+-+++.++-.+.|.....+. -.-..+-.|.-+|.+
T Consensus 15 ~~~l~~Hi~lm~la~~il~Pi~lvL~~~~-----sr~~~~~q~~~~~l~~~g~~~g~~~~~~~--p~lyp~n~H~k~g~i 87 (105)
T PF10348_consen 15 RSALYAHIVLMTLAWVILYPIGLVLGNAR-----SRWHLPVQTVFLVLMILGLFLGSVYNGST--PDLYPNNAHGKMGWI 87 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----chHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCHHHHHHHH
Confidence 4568889999999875433 666665544 33566555555556666666665432211 112357799999999
Q ss_pred HHHHHHHHHHHhhhh
Q 028753 169 ISLVGIINIYTGLKA 183 (204)
Q Consensus 169 ~~~Lgivni~~Gl~~ 183 (204)
+..+.++|...|+-.
T Consensus 88 l~~l~~~q~~~gv~~ 102 (105)
T PF10348_consen 88 LFVLMIVQVILGVIL 102 (105)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998743
No 30
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=92.05 E-value=3 Score=34.86 Aligned_cols=92 Identities=15% Similarity=0.100 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhheecccC----C--CCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHH
Q 028753 92 FVYLHIILQMLSVVLATVGAIMSIRNFEN----S--FNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLL 165 (204)
Q Consensus 92 Wf~~H~~lq~~av~laiiG~il~i~~~~~----~--f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~l 165 (204)
.|.+|..+|+++.++.-.=+++.+....+ + ....|..+=.+.+++..+-...-+-.++. +..+-..-.|.|+
T Consensus 34 ~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~--~~~~nlySlHSWl 111 (179)
T cd08762 34 NFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNV--HHTANLYSLHSWV 111 (179)
T ss_pred ceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCccchhhHHHHH
Confidence 69999999999988765444555553221 1 24578877777777766665555543332 1233344579999
Q ss_pred HHHHHHHHHHHHHHhhhhcC
Q 028753 166 GTAISLVGIINIYTGLKAYL 185 (204)
Q Consensus 166 G~~~~~Lgivni~~Gl~~~~ 185 (204)
|..++.+=..|...|+..+-
T Consensus 112 Gl~t~~Lf~lQ~~~Gf~~f~ 131 (179)
T cd08762 112 GICTVALFTCQWVMGFTSFL 131 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987753
No 31
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=91.95 E-value=0.67 Score=37.31 Aligned_cols=91 Identities=20% Similarity=0.141 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheec---cc------CCC
Q 028753 52 ASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRN---FE------NSF 122 (204)
Q Consensus 52 ~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~---~~------~~f 122 (204)
+....+|+++..+|.... -+|+.++-..|...+. +.-.-+|..+-+.++++...=...|+.. .+ ...
T Consensus 38 ~~~k~iH~~l~~la~~~~-vvGl~avf~~~~~~~~---~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~ 113 (144)
T cd08766 38 EVQKAVHLTLHLVALVLG-IVGIYAAFKFHNEVGI---PNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPGASRNTRAAL 113 (144)
T ss_pred chhHHHHHHHHHHHHHHH-HHHHHHHHHHhcccCc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 345679999999998765 5666655444433221 2234479998888888766655555432 11 124
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhc
Q 028753 123 NNNHQRLGLALYGALWLQVSIGFF 146 (204)
Q Consensus 123 ~~~H~~iGl~v~~l~~lQ~l~G~l 146 (204)
.-.|...|.+++.+.+.....|+.
T Consensus 114 ~p~H~~~G~~~~~la~~t~~lGl~ 137 (144)
T cd08766 114 LPWHVFLGLAIYYLAIATAETGLL 137 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999985
No 32
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=91.38 E-value=2.5 Score=35.38 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheecccC----CCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCC------cchhHhHH
Q 028753 93 VYLHIILQMLSVVLATVGAIMSIRNFEN----SFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKR------RSMWYVVH 162 (204)
Q Consensus 93 f~~H~~lq~~av~laiiG~il~i~~~~~----~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~------R~~~~~~H 162 (204)
..+||..-.+-......|...+.....+ .+.+.|..+|+.+..++++-.+..+..|.++-.. |..-+..|
T Consensus 13 i~lHWl~allv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~p~~~~~~~~~~~~aA~~~H 92 (181)
T COG3038 13 IALHWLMALLVIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLRNPAPPIVPGPPPWQRKAAKLGH 92 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCChHHHHHHHHHH
Confidence 4567766555555555555555554433 3579999999999999999999998766553211 22224444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCccceEEEeE
Q 028753 163 WLLGTAISLVGIINIYTGLKAYLIKHQEALRFGL 196 (204)
Q Consensus 163 ~~lG~~~~~Lgivni~~Gl~~~~~~~~~~i~~~v 196 (204)
. .++++-++--.+|.-....++.....+|.
T Consensus 93 l----~LY~l~lalPlsG~l~~~~~g~~~~~FG~ 122 (181)
T COG3038 93 L----ALYLLMLALPLSGYLLSTASGRPISVFGL 122 (181)
T ss_pred H----HHHHHHHHHHHHHHHHHhcCCCCceecch
Confidence 3 34445455556776665544444455554
No 33
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=91.29 E-value=1.1 Score=36.53 Aligned_cols=92 Identities=13% Similarity=0.214 Sum_probs=66.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecc-----c----CC
Q 028753 51 TASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNF-----E----NS 121 (204)
Q Consensus 51 ~~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~-----~----~~ 121 (204)
++....+|..+..+|.... .+|+.++-..|...+. +.-.-+|..+-++++++...=.+.|+..+ + ..
T Consensus 44 k~~~k~iH~~L~~~a~~~~-i~Gl~avf~~hn~~~~---~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~ 119 (153)
T cd08765 44 KLLMKLIHAGLHILAFILA-IISVVAVFVFHNAKNI---PNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAA 119 (153)
T ss_pred chhhHHHHHHHHHHHHHHH-HHHHHHHHHHccccCC---CccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHH
Confidence 3466779999999998655 5666655555443222 34566899999988887766666665432 1 13
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhc
Q 028753 122 FNNNHQRLGLALYGALWLQVSIGFF 146 (204)
Q Consensus 122 f~~~H~~iGl~v~~l~~lQ~l~G~l 146 (204)
..-.|...|++++.+.+.-...|+.
T Consensus 120 ~~p~H~~~G~~i~~Lai~t~~lG~~ 144 (153)
T cd08765 120 LMPLHVYSGLFIFGTVIATALMGIT 144 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5779999999999999999999975
No 34
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=90.17 E-value=0.64 Score=28.10 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=26.6
Q ss_pred CcchhHhHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028753 154 RRSMWYVVHWLLGTAISLVGIINIYTGLKAYL 185 (204)
Q Consensus 154 ~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~~ 185 (204)
.|+.+..+|++.|....+.-..-+.+|+.+..
T Consensus 1 ~r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~~ 32 (34)
T PF13172_consen 1 FRKFWRKIHRWLGLIAAIFLLLLALTGALLNF 32 (34)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36778889999999999998888888887654
No 35
>PLN02351 cytochromes b561 family protein
Probab=89.20 E-value=13 Score=32.58 Aligned_cols=133 Identities=20% Similarity=0.202 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecc---c-----C-CC
Q 028753 52 ASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNF---E-----N-SF 122 (204)
Q Consensus 52 ~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~---~-----~-~f 122 (204)
+....+|..+..+|.... -+|+.. .+-+... ..+.-.-+|..+-+.++++..+=.+.|+..+ + + ..
T Consensus 81 k~~K~lH~~Lh~~Ali~~-vvGl~a-~fh~~~~---~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~ 155 (242)
T PLN02351 81 KTKKSVHLWLQGLALASG-VFGIWT-KFHGQDG---IVANFYSLHSWMGLICVSLFGAQWLTGFMSFWHRGEMRTTRTTV 155 (242)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHH-HHhcccC---CccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHH
Confidence 357889999999998775 667666 3322211 0123577899999988887665555555432 1 1 24
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhccC------CCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhh-hcCCCcc
Q 028753 123 NNNHQRLGLALYGALWLQVSIGFFKP------PRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLK-AYLIKHQ 189 (204)
Q Consensus 123 ~~~H~~iGl~v~~l~~lQ~l~G~lrp------~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~-~~~~~~~ 189 (204)
.-.|...|.+++.+.+.-.+.|+.-. .++-...+.-...=..+|.+++++|..-++.-.. .|.++.+
T Consensus 156 ~P~Hv~~Gl~if~LaiaTa~lGl~EKl~F~~~~~~y~~~~~Ea~lvN~~Glliv~fG~~Vv~~~~~p~~kr~~~ 229 (242)
T PLN02351 156 LPWHVFLGLYTYGLAVATAETGLLEKLTFLQTKRNVSKHGSESMVVNGLGLGLALLSGIVILAAVLPKYQSHSS 229 (242)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCchhhhHHHHHHHHHHHHHHHHHhhcCccccCCCc
Confidence 56899999999999999999997421 1111222222334447899999999777765544 3444443
No 36
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=88.65 E-value=1.7 Score=36.13 Aligned_cols=86 Identities=17% Similarity=0.155 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHhhheecccCCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHHHHHHHHHHH
Q 028753 98 ILQMLSVVLATVGAIMSIRNFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINI 177 (204)
Q Consensus 98 ~lq~~av~laiiG~il~i~~~~~~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni 177 (204)
+.|....++...+-.-.+. ..+....|..+|.++++++.+-.++|..- ...+..+++.--|-+.|..+..+=.++.
T Consensus 57 ~~~~~~~~~~~~~~~~~l~--~~~~r~~H~~~g~~ll~~~~L~~lGG~~~--~~~~~~~lf~spH~~~Gl~~~~L~~~s~ 132 (175)
T PF13301_consen 57 IARAIFLILALTGTRKELV--KLKARDRHYRLGFALLAFMGLGALGGQLG--TYRQNGKLFWSPHLWAGLAVVGLMAFSA 132 (175)
T ss_pred hhHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHcchHH--HHHcCCCCccCchHHHHHHHHHHHHHHH
Confidence 3344444444444444443 23578899999999999999999988531 0011223555569999999999999999
Q ss_pred HHhhhhcCCC
Q 028753 178 YTGLKAYLIK 187 (204)
Q Consensus 178 ~~Gl~~~~~~ 187 (204)
.+.-+++..+
T Consensus 133 al~~~i~~g~ 142 (175)
T PF13301_consen 133 ALVPQIQKGN 142 (175)
T ss_pred HHHHHHccCC
Confidence 8888887654
No 37
>PRK11513 cytochrome b561; Provisional
Probab=88.25 E-value=5.5 Score=32.70 Aligned_cols=65 Identities=15% Similarity=0.043 Sum_probs=42.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCc-chh-HhHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 028753 122 FNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRR-SMW-YVVHWLLGTAISLVGIINIYTGLKAYLI 186 (204)
Q Consensus 122 f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R-~~~-~~~H~~lG~~~~~Lgivni~~Gl~~~~~ 186 (204)
+.+.|..+|+.++.++++-.+..+.++.++.... +.| +..=...-..++++-++...+|+.+...
T Consensus 41 ~~~~H~s~G~~vl~L~v~Rl~~r~~~~~P~~~~~~~~~~~~~A~~~H~~LY~lli~~plsG~~~~~~ 107 (176)
T PRK11513 41 INMIHVSCGISILVLMVVRLLLRLKYPTPPIVPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVMMYN 107 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4578999999999999999999998655432221 222 2211233356666666777777776543
No 38
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=86.88 E-value=11 Score=33.14 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=62.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecc----c----C-
Q 028753 50 QTASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNF----E----N- 120 (204)
Q Consensus 50 ~~~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~----~----~- 120 (204)
+++....+|+.+-.+|.... -.|+..+--..+... -....-+|..+-+..+.+-.+=.+.|+..+ . |
T Consensus 84 ~k~~~KliH~~LH~~Alvl~-i~gl~avf~~hn~~~---i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs 159 (245)
T KOG1619|consen 84 SKKVSKLIHLGLHIIALVLA-IIGLCAVFDSHNLVG---IANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRS 159 (245)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcC---ccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHh
Confidence 34466679999999887644 333333322222111 123467899999988887666666666542 1 1
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHhc
Q 028753 121 SFNNNHQRLGLALYGALWLQVSIGFF 146 (204)
Q Consensus 121 ~f~~~H~~iGl~v~~l~~lQ~l~G~l 146 (204)
..--.|..+|+..+++.+.|...|+.
T Consensus 160 ~lmP~H~~~Gl~~f~lai~ta~~Gl~ 185 (245)
T KOG1619|consen 160 RLMPWHVFLGLAIFILAIVTALTGLL 185 (245)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 25678999999999999999999984
No 39
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=86.67 E-value=7.1 Score=32.13 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=21.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028753 159 YVVHWLLGTAISLVGIINIYTGLKAYL 185 (204)
Q Consensus 159 ~~~H~~lG~~~~~Lgivni~~Gl~~~~ 185 (204)
|..-+..-..++++..+.+.+|+.++.
T Consensus 113 n~~~k~~~~~l~~~~~~~~lTG~~~~~ 139 (211)
T TIGR02125 113 NPLQFVAYFGFIVLILFMILTGLALYY 139 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556666677788888899999998874
No 40
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=84.87 E-value=13 Score=29.42 Aligned_cols=90 Identities=16% Similarity=0.137 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhheecccC----CC--CChhhHHHHHHHHHHHHHHHHH---------------------hc
Q 028753 94 YLHIILQMLSVVLATVGAIMSIRNFEN----SF--NNNHQRLGLALYGALWLQVSIG---------------------FF 146 (204)
Q Consensus 94 ~~H~~lq~~av~laiiG~il~i~~~~~----~f--~~~H~~iGl~v~~l~~lQ~l~G---------------------~l 146 (204)
-+|+..-..-+.+...|+.+....... .. .+.|..+|+++..+.++=.+.. ..
T Consensus 8 ~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (182)
T PF01292_consen 8 ILHWLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLYFLL 87 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHh
Confidence 358877777777777777665544321 12 6789999999988887666655 22
Q ss_pred cCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028753 147 KPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYL 185 (204)
Q Consensus 147 rp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~~ 185 (204)
+.+. +....+|..-+....+.+++..+.+.+|+-++.
T Consensus 88 ~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~~ 124 (182)
T PF01292_consen 88 RGKP--PPAGKYNPGQKIVHWVLYLLLLLLPITGLLLWF 124 (182)
T ss_pred cCCC--CCCCcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 112223333334555666777777788888754
No 41
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=84.84 E-value=1.8 Score=26.70 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=23.5
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753 155 RSMWYVVHWLLGTAISLVGIINIYTGLKA 183 (204)
Q Consensus 155 R~~~~~~H~~lG~~~~~Lgivni~~Gl~~ 183 (204)
|+.+...|+|+|.++-++-.+-+++|.-+
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~ 29 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGAVM 29 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 56778899999998888888888888655
No 42
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=81.36 E-value=12 Score=27.07 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=24.1
Q ss_pred CCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753 153 KRRSMWYVVHWLLGTAISLVGIINIYTGLKA 183 (204)
Q Consensus 153 ~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~ 183 (204)
+.|+ +.-.|...|......-.+-+.+|+..
T Consensus 56 ~~r~-~~dlH~~~G~~~~~~ll~~a~TG~~~ 85 (88)
T PF13703_consen 56 SKRR-WFDLHRVLGLWFLPFLLVIALTGLFF 85 (88)
T ss_pred ccCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455 66699999999999888888888754
No 43
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=74.28 E-value=25 Score=29.30 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=25.4
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHhhhhc
Q 028753 155 RSMWYVVHWLLGTAISLVGIINIYTGLKAY 184 (204)
Q Consensus 155 R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~ 184 (204)
...+|...+..-..+++++.+.+.+|+.++
T Consensus 101 ~~kyN~~Qk~~y~~i~~~~~~~~~TGl~m~ 130 (204)
T TIGR01583 101 AGKYNAGQKSWYWILVLGGFLMIITGIFMW 130 (204)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888999999999998
No 44
>PRK10179 formate dehydrogenase-N subunit gamma; Provisional
Probab=72.03 E-value=33 Score=29.02 Aligned_cols=46 Identities=9% Similarity=-0.011 Sum_probs=32.2
Q ss_pred HHHHHhccCCCC-CCCcchhHhHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028753 140 QVSIGFFKPPRG-NKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYL 185 (204)
Q Consensus 140 Q~l~G~lrp~~~-~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~~ 185 (204)
.-+.++++.++. .+....+|...+.....+.+++.+.+.+|+-++.
T Consensus 90 ~~~~~~~~~~~~~~p~~gk~N~~QKl~y~~i~~~~~~~i~TGl~l~~ 136 (217)
T PRK10179 90 LNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWR 136 (217)
T ss_pred HHHHHHhcCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555543221 1234457999999999899999999999999974
No 45
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=70.52 E-value=51 Score=26.01 Aligned_cols=125 Identities=17% Similarity=0.111 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhH--HHHHHHHHHHHHHHHHHHHHhhh-----------------
Q 028753 54 HIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARV--FVYLHIILQMLSVVLATVGAIMS----------------- 114 (204)
Q Consensus 54 ~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~--Wf~~H~~lq~~av~laiiG~il~----------------- 114 (204)
.+..| +++++++.+++..|..+..-.+..... .. .+.+|...-.+-..+.+.-+...
T Consensus 6 ~r~~H-W~~a~~~i~l~~tG~~~~~~~~~~~~~---~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 81 (182)
T PF01292_consen 6 TRILH-WLNALSFIALIATGLWIHFPPPGLYFG---DFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKN 81 (182)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhccccccccc---ccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHH
Confidence 44556 466778888888888764443332211 11 26679886665444443333333
Q ss_pred ----eeccc---CCCCC-hhhHHHHHHHHHHHHHHHHHhcc----CCC------CCCCcchhHhHHHHHHHHHHHHHHHH
Q 028753 115 ----IRNFE---NSFNN-NHQRLGLALYGALWLQVSIGFFK----PPR------GNKRRSMWYVVHWLLGTAISLVGIIN 176 (204)
Q Consensus 115 ----i~~~~---~~f~~-~H~~iGl~v~~l~~lQ~l~G~lr----p~~------~~~~R~~~~~~H~~lG~~~~~Lgivn 176 (204)
....+ ...++ .-.....+++.++.++++.|++. ++. ..........+|...+..++.+-++=
T Consensus 82 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~vH~~~a~~~i~~i~~H 161 (182)
T PF01292_consen 82 YLYFLLRGKPPPAGKYNPGQKIVHWVLYLLLLLLPITGLLLWFASAEGFPLFAASPGGAQIARSVHFFLAWLLIAFIILH 161 (182)
T ss_pred HHHHHhcCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111 12234 34445778889999999999753 111 23345667999999999988766666
Q ss_pred HHHhhh
Q 028753 177 IYTGLK 182 (204)
Q Consensus 177 i~~Gl~ 182 (204)
++..+.
T Consensus 162 v~~a~~ 167 (182)
T PF01292_consen 162 VYAALF 167 (182)
T ss_pred HHHHHH
Confidence 665543
No 46
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=68.87 E-value=9.1 Score=28.28 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCC----CCCcchhHhHHHHHHHHHHHHHHHH
Q 028753 130 GLALYGALWLQVSIGFFKPPRG----NKRRSMWYVVHWLLGTAISLVGIIN 176 (204)
Q Consensus 130 Gl~v~~l~~lQ~l~G~lrp~~~----~~~R~~~~~~H~~lG~~~~~Lgivn 176 (204)
|.+.+.++.++.+.+ .|+..- ..........|+++|+.+.+++.+=
T Consensus 2 G~~a~~~l~~~~~l~-~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H 51 (125)
T PF01794_consen 2 GILAFALLPLVFLLG-LRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLH 51 (125)
T ss_pred HHHHHHHHHHHHHHH-HhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666655 333211 1111223347777777766666554
No 47
>CHL00070 petB cytochrome b6
Probab=66.25 E-value=63 Score=27.68 Aligned_cols=119 Identities=14% Similarity=0.107 Sum_probs=75.5
Q ss_pred cccCccchhHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecccCCCCC
Q 028753 45 YKMGPQTASHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNN 124 (204)
Q Consensus 45 ~~~~~~~~~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~~~f~~ 124 (204)
++..|+..+....=|.+..+++.+..-.|++++-++.+... ..|-- +. .+.-=...+.-..+
T Consensus 23 ~~~~p~~~~~~~~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~----~Af~S-------v~-------~I~~ev~~Gwl~R~ 84 (215)
T CHL00070 23 SKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVT----EAFAS-------VQ-------YIMTEVNFGWLIRS 84 (215)
T ss_pred cCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH----HHHHH-------HH-------HHHcccccHHHHHH
Confidence 34455555666677999999999999999999988775321 11111 10 00000011122467
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 028753 125 NHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLI 186 (204)
Q Consensus 125 ~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~~~ 186 (204)
.|..-.-+.++++.+...-|++...-..+ | ..-|..|.++.++.++..++|..+.-+
T Consensus 85 ~H~~gas~~~~~~~lH~~r~~~~gsYk~p-r----e~~W~~Gv~l~~l~m~~af~GY~Lpw~ 141 (215)
T CHL00070 85 VHRWSASMMVLMMILHVFRVYLTGGFKKP-R----ELTWVTGVVLAVLTVSFGVTGYSLPWD 141 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCC-c----ccCcHHHHHHHHHHHHHHHccccCCcc
Confidence 88888888888888888888764221111 1 123678999998888888888877533
No 48
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=63.39 E-value=84 Score=25.90 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHhhhc------cccccch------hhhHHHHHHHHHHHHHHHHHHHHHhhheeccc
Q 028753 52 ASHIAVHGLLLWASMGFLTPVGILTIRMS------NKVDSVI------KARVFVYLHIILQMLSVVLATVGAIMSIRNFE 119 (204)
Q Consensus 52 ~~~~~~HG~LM~vAw~iL~P~Gil~aR~~------k~~~~~~------~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~ 119 (204)
...+.+|..+..+|.+.+.=.++...-+. |+.+..+ ..+.+=+.-.-.-.+|..+.++|.+.|....+
T Consensus 69 ~~~l~iHv~~~~~~ya~~~ia~~~al~~l~~~~~Lk~~~~~~~~~~lp~l~~le~~~~~~~~~gf~~lti~l~~G~~wa~ 148 (214)
T PF01578_consen 69 SPWLYIHVPLALLGYAAFAIAALAALLYLIQERRLKKKKFSRFYQRLPSLETLERLSYRLILIGFILLTIGLITGAIWAK 148 (214)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 35889999999999999887777666554 1111110 01112223334445677777888888866543
No 49
>PRK10171 hydrogenase 1 b-type cytochrome subunit; Provisional
Probab=62.74 E-value=60 Score=27.71 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhhccccccch----hhhHHHHHHHHHHHHHHHHHHHHHhhhee
Q 028753 53 SHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVI----KARVFVYLHIILQMLSVVLATVGAIMSIR 116 (204)
Q Consensus 53 ~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~----~~~~Wf~~H~~lq~~av~laiiG~il~i~ 116 (204)
..+..| +++++++..+...|..+..-.....+.. +......+|.....+-..+.+.=++.++.
T Consensus 17 ~~Ri~H-W~~Al~i~~l~~tG~~i~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~Rl~w~~~ 83 (235)
T PRK10171 17 PVRIWH-WLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMIFTVVLLMRIYWAFV 83 (235)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhCcCCCCCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566 7788888888888876643221111100 01112456877766655554544444443
No 50
>PF13630 SdpI: SdpI/YhfL protein family
Probab=62.21 E-value=9.7 Score=26.24 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=24.6
Q ss_pred CCcchhHhHHHHHHHHHHHHHHHHHHHhhhhc
Q 028753 153 KRRSMWYVVHWLLGTAISLVGIINIYTGLKAY 184 (204)
Q Consensus 153 ~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~ 184 (204)
+....|+..|+..|......|++.+..|+-..
T Consensus 18 ~s~~~W~~a~r~~g~~~~~~Gi~~~~~~~~~~ 49 (76)
T PF13630_consen 18 KSDENWKKAHRFAGKIFIIGGIVLLIIGIIIL 49 (76)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888899888888888888777766543
No 51
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=60.28 E-value=72 Score=26.70 Aligned_cols=43 Identities=5% Similarity=-0.086 Sum_probs=28.2
Q ss_pred HHHHhccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhhc
Q 028753 141 VSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAY 184 (204)
Q Consensus 141 ~l~G~lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~ 184 (204)
.+.++++.++ .+....+|...+..-..+.+++.+.+.+|+-++
T Consensus 91 ~~~~~~~~~~-~p~~~kyN~~qk~~y~~~~~~~~~~~iTGl~l~ 133 (211)
T PRK10639 91 NIRKIVVNEE-VGDTGRYNFGQKCVFWAAIIFLVLLLVSGVIIW 133 (211)
T ss_pred HhhhhcCCCC-CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345544221 233344677788777778888888899999887
No 52
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=59.79 E-value=20 Score=20.75 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=14.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhh
Q 028753 159 YVVHWLLGTAISLVGIINIYTGLK 182 (204)
Q Consensus 159 ~~~H~~lG~~~~~Lgivni~~Gl~ 182 (204)
+..|+|++-+..++-++-..+|+.
T Consensus 2 ~~LH~w~~~i~al~~lv~~iTGl~ 25 (27)
T PF03929_consen 2 NDLHKWFGDIFALFMLVFAITGLI 25 (27)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666665666654
No 53
>cd01661 cbb3_Oxidase_I Cytochrome cbb3 oxidase subunit I. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found mainly in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two
Probab=54.64 E-value=2e+02 Score=27.49 Aligned_cols=65 Identities=14% Similarity=0.070 Sum_probs=41.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhH---hhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheec
Q 028753 50 QTASHIAVHGLLLWASMGFLTPVGILT---IRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRN 117 (204)
Q Consensus 50 ~~~~~~~~HG~LM~vAw~iL~P~Gil~---aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~ 117 (204)
++...+.+|+..|..+|....-.|... .|..++... .+.+-......-.++.++++.++..+...
T Consensus 85 ~f~~~rt~H~~~~if~w~~~~~~g~~~ylvp~~~g~~l~---~~~l~~~~~w~~~~g~~l~~~~~~~G~~~ 152 (493)
T cd01661 85 SFGRLRPLHTNAVIFGFGGNALIATSFYVVQRTCRARLA---GGNLAWFVFWGYNLFIVLAATGYLLGITQ 152 (493)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---ChhHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 678999999999999999876666543 355433211 11222234445566777777777777544
No 54
>PRK03735 cytochrome b6; Provisional
Probab=53.83 E-value=1.1e+02 Score=26.33 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecccCCCCChhhHHHHHH
Q 028753 54 HIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNNNHQRLGLAL 133 (204)
Q Consensus 54 ~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~~~f~~~H~~iGl~v 133 (204)
....=|.+...++.+..-.|++++-+..+... ..|-- + -.+.-=..++.-..+.|..=.-+.
T Consensus 40 ~~~~~G~l~~~~~~iqi~TGi~L~~~Y~P~~~----~A~~S-------v-------~~I~~ev~~GwliR~~H~~gas~~ 101 (223)
T PRK03735 40 FVYCFGGLTFFCFVIQILSGMFLTMYYVPDIK----NAYES-------V-------YYLQNEVAFGWIVRGMHHWGASLV 101 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch----hHHHH-------H-------HHHHcccccHHHHHHHHhhhhHHH
Confidence 55666999999999999999999988776422 11111 0 111000011122567888888888
Q ss_pred HHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 028753 134 YGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYLIK 187 (204)
Q Consensus 134 ~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~~~~ 187 (204)
++++.++..-|++...-..+ |. .-|+.|.++.++.+...++|..+.-+.
T Consensus 102 ~~~~~lH~~r~~~~gsYk~p-re----~~W~~Gv~l~~l~~~~af~GY~Lpw~q 150 (223)
T PRK03735 102 IVMMFLHTLRVFFTGGYKKP-RE----LNWVVGVLIFFVTVGLGFTGYLLPWDQ 150 (223)
T ss_pred HHHHHHHHHHHHHHHHHcCC-CC----ceeHHHHHHHHHHHHHHhccccCCccc
Confidence 88888888888764211111 11 236799999999999999998875433
No 55
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=53.35 E-value=16 Score=27.30 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=24.0
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028753 155 RSMWYVVHWLLGTAISLVGIINIYTGLKAYL 185 (204)
Q Consensus 155 R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~~ 185 (204)
|+.....|+++|++-..+..+....|+.+..
T Consensus 2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~i~~ 32 (103)
T PF10067_consen 2 RRKGPRLHRWLGRVYVAAMLISALSALFIAF 32 (103)
T ss_pred CCCcccHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4455678999999988888888888877643
No 56
>COG4329 Predicted membrane protein [Function unknown]
Probab=51.24 E-value=21 Score=28.82 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhhheecccCC--CCChhhHHHHHHHHHHHHHHHHHhccC-------CCCCCCcchhHhHHHHHHHHH
Q 028753 99 LQMLSVVLATVGAIMSIRNFENS--FNNNHQRLGLALYGALWLQVSIGFFKP-------PRGNKRRSMWYVVHWLLGTAI 169 (204)
Q Consensus 99 lq~~av~laiiG~il~i~~~~~~--f~~~H~~iGl~v~~l~~lQ~l~G~lrp-------~~~~~~R~~~~~~H~~lG~~~ 169 (204)
.+....++++.|.++-+....++ ..++|-+.|-.+++.-.+|..-|-+.| .+....+-.|+..--.+|..+
T Consensus 64 FHa~~wv~tv~Gl~~lwr~grr~~~~wSa~~~~G~ll~GaGlFnl~eGtinHqilgiHhv~~~v~~i~wD~gflvlgalm 143 (160)
T COG4329 64 FHAFSWVATVGGLFMLWRLGRRKTFQWSAKYWWGGLLLGAGLFNLYEGTINHQILGIHHVRYVVNVIVWDFGFLVLGALM 143 (160)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcceeehhhhhhhhhhcccchheeehhhhhhhheeeeecccceeeeehhHHHHHHHHH
Confidence 34566677778887777665433 478899999999999999988886543 344455677887777777777
Q ss_pred HHHHHHHH
Q 028753 170 SLVGIINI 177 (204)
Q Consensus 170 ~~Lgivni 177 (204)
.+.|.+-.
T Consensus 144 viiG~v~l 151 (160)
T COG4329 144 VIIGLVVL 151 (160)
T ss_pred HHHHHHhe
Confidence 77665543
No 57
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=46.69 E-value=52 Score=29.93 Aligned_cols=77 Identities=22% Similarity=0.300 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHhhheeccc---C--C-CCChhhHHHHHHHHHHHHHHHHHhcc---CCCCCCCcchhHhHHHHHHH
Q 028753 97 IILQMLSVVLATVGAIMSIRNFE---N--S-FNNNHQRLGLALYGALWLQVSIGFFK---PPRGNKRRSMWYVVHWLLGT 167 (204)
Q Consensus 97 ~~lq~~av~laiiG~il~i~~~~---~--~-f~~~H~~iGl~v~~l~~lQ~l~G~lr---p~~~~~~R~~~~~~H~~lG~ 167 (204)
..+..+.++++.+|.+-++.... . + +---|-..|+++++-.++-.+.-+.| ..-..+.|+.|..+=...|.
T Consensus 155 ~~Liav~~~~~li~~iw~~~Ll~~~~~~p~y~VAGhVm~Gla~iCtsLIaLVAtI~RQirN~ys~~Er~~W~~lVl~mGs 234 (347)
T PF10951_consen 155 NILIAVPILCALIGWIWAIVLLSSSDEHPAYFVAGHVMFGLACICTSLIALVATIARQIRNTYSEKERWKWPKLVLVMGS 234 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccceehhHHHhhHHHHHHHHHHHHHHHHHHHhccccHHHhhhhHHHHHHHhh
Confidence 35556678888888887776532 1 2 44569999999988877777666654 34446677777755444444
Q ss_pred HHHHHH
Q 028753 168 AISLVG 173 (204)
Q Consensus 168 ~~~~Lg 173 (204)
+.++.|
T Consensus 235 i~~l~G 240 (347)
T PF10951_consen 235 ISILWG 240 (347)
T ss_pred HHHHhh
Confidence 444444
No 58
>PF14007 YtpI: YtpI-like protein
Probab=45.71 E-value=83 Score=23.34 Aligned_cols=44 Identities=27% Similarity=0.516 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhhc
Q 028753 128 RLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAY 184 (204)
Q Consensus 128 ~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~ 184 (204)
.+|+.+..+.+.|.+. .. ..+=.+.|.+.+++|..|++.|+..|
T Consensus 38 alG~fl~~fgiNQ~~~--~~-----------st~~~iV~~ifl~lG~~n~~~G~r~y 81 (89)
T PF14007_consen 38 ALGIFLILFGINQMFL--FG-----------STVRLIVGAIFLVLGLFNLFAGIRAY 81 (89)
T ss_pred HHHHHHHHHHHHHHHH--cc-----------cHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4555555666666655 11 11223566666667777776666554
No 59
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=45.64 E-value=1.5e+02 Score=23.42 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheec---c-cCCC---------
Q 028753 56 AVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRN---F-ENSF--------- 122 (204)
Q Consensus 56 ~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~---~-~~~f--------- 122 (204)
.+.+.++.++-..+ -.|...+|-.+ ...|+..|..+..++.+-+++=... . +.+|
T Consensus 6 ~l~a~~~~~s~~ll-~~g~~~Ir~~~-----------~~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~g~~~ir~~ 73 (133)
T PF04238_consen 6 DLNAVLNAISAVLL-LIGWYFIRRGR-----------IKLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPFGGPGWIRPV 73 (133)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCccHHHH
Confidence 35566666665544 56666666433 3469999998887766444322221 1 1222
Q ss_pred ----CChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753 123 ----NNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA 183 (204)
Q Consensus 123 ----~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~ 183 (204)
--.|..+-.++..+.......|+-+ ..--|+=.|+.+..+=.....+|.-.
T Consensus 74 Y~~iL~~Hi~LA~~~~pL~l~tl~~a~~~----------~~~~Hrki~r~t~piWlyvsvTGvvV 128 (133)
T PF04238_consen 74 YLFILISHIILAIVALPLVLYTLYRALRG----------RFTRHRKIGRWTFPIWLYVSVTGVVV 128 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2357777777777777777777743 12346666666666555555555543
No 60
>PF13630 SdpI: SdpI/YhfL protein family
Probab=43.89 E-value=61 Score=22.13 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=15.9
Q ss_pred hhccccccchhhhHHHHHHHHHHHHHHHHHHH
Q 028753 78 RMSNKVDSVIKARVFVYLHIILQMLSVVLATV 109 (204)
Q Consensus 78 R~~k~~~~~~~~~~Wf~~H~~lq~~av~laii 109 (204)
|..+..+++ +.|.+.|+..-..-....++
T Consensus 12 Rt~~t~~s~---~~W~~a~r~~g~~~~~~Gi~ 40 (76)
T PF13630_consen 12 RTPWTMKSD---ENWKKAHRFAGKIFIIGGIV 40 (76)
T ss_pred eChHHhCCH---HHHHHHHHHHHHHHHHHHHH
Confidence 444444433 68999998555443333333
No 61
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=37.14 E-value=96 Score=22.61 Aligned_cols=13 Identities=38% Similarity=0.912 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHH
Q 028753 90 RVFVYLHIILQML 102 (204)
Q Consensus 90 ~~Wf~~H~~lq~~ 102 (204)
+.|++.|...-..
T Consensus 108 e~f~~~H~~~~~~ 120 (125)
T PF01794_consen 108 EIFYYLHILFYIA 120 (125)
T ss_pred HHHHHHHHHHHHH
Confidence 5799999875443
No 62
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=36.82 E-value=1.5e+02 Score=24.73 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=47.5
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHhccCC--CCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028753 120 NSFNNNHQRLGLALYGALWLQVSIGFFKPP--RGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYL 185 (204)
Q Consensus 120 ~~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~--~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~~ 185 (204)
++++..-..+=+.+..+++.|...|.++.. +....|....-.|+-+|..+.++.+.=+...+....
T Consensus 6 ~~y~~~~i~lHWl~allv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~ 73 (181)
T COG3038 6 NRYGLVQIALHWLMALLVIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLRNPA 73 (181)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345555556667777888888888876543 223345566789999999999999988887776543
No 63
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=36.78 E-value=1.1e+02 Score=23.94 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=45.6
Q ss_pred HHHHHHHHHHH---HHHHHHHHHhhheecccC-CCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHH
Q 028753 92 FVYLHIILQML---SVVLATVGAIMSIRNFEN-SFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGT 167 (204)
Q Consensus 92 Wf~~H~~lq~~---av~laiiG~il~i~~~~~-~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~ 167 (204)
|-++|+.-|.. |.++.+.|.+.-+...++ +..-.-..+.+.+..+..-+.+.|+.. .+...-|....+.=++.|.
T Consensus 31 ~M~Ch~tg~a~~~ig~vi~~~~li~~~~k~~~~~~gl~i~~i~~gil~~lip~~lIG~C~-~~~M~Ch~~T~p~v~v~~~ 109 (124)
T PF14387_consen 31 HMKCHWTGQAVTGIGAVIAVLSLIMLFVKNKKARIGLSIANIALGILVILIPTVLIGVCM-MPTMHCHTVTKPAVRVLGG 109 (124)
T ss_pred eeeehhHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcccccCCC-CCCCChhhhHHHHHHHHHH
Confidence 78899887775 444555555544442111 122223333333334444444566542 2333445555666667777
Q ss_pred HHHHHHHHHHH
Q 028753 168 AISLVGIINIY 178 (204)
Q Consensus 168 ~~~~Lgivni~ 178 (204)
++.++|.+++|
T Consensus 110 l~iv~~~~~~f 120 (124)
T PF14387_consen 110 LIIVIGIIYLF 120 (124)
T ss_pred HHHHHHHHHHH
Confidence 77777777654
No 64
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=36.63 E-value=1.3e+02 Score=20.11 Aligned_cols=48 Identities=23% Similarity=0.187 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhHhhhccccc--cchhhhHHHHHHHHHHHHHHHHH
Q 028753 60 LLLWASMGFLTPVGILTIRMSNKVD--SVIKARVFVYLHIILQMLSVVLA 107 (204)
Q Consensus 60 ~LM~vAw~iL~P~Gil~aR~~k~~~--~~~~~~~Wf~~H~~lq~~av~la 107 (204)
.++.+++..++=.|+++.+...+.. .+...+.|..+|...-....+++
T Consensus 7 ~~l~~~~~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~~~~~l~ 56 (64)
T PF14358_consen 7 LLLLVSFLVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGYLFLILI 56 (64)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888877654320 01122467788876655554443
No 65
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=36.30 E-value=2.6e+02 Score=23.48 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecccCCCCChhhHHHHH
Q 028753 53 SHIAVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNNNHQRLGLA 132 (204)
Q Consensus 53 ~~~~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~~~f~~~H~~iGl~ 132 (204)
+....=|.+...++.+..-.|++.+-+..+.... .+- .+.- + .-=...+.-..+.|.+-.-.
T Consensus 20 ~~~~~~G~ll~~~~~iqiiTGi~La~~Y~p~~~~----A~~-------Sv~~---i----~~ev~~G~liR~~H~~gas~ 81 (200)
T cd00284 20 SYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTL----AFS-------SVQY---I----MRDVNFGWLIRSLHANGASM 81 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH----HHH-------HHHH---H----HccCcchHHHHHHHHHHHHH
Confidence 3455669999999999999999999888764211 111 1100 0 00000111235677777677
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028753 133 LYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAYL 185 (204)
Q Consensus 133 v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~~ 185 (204)
.++++.+..+-+++.. ..|+..+ .-|+.|.++.++.++..++|..+.-
T Consensus 82 ~~~~~~lH~~r~~~~g----sY~~pre-~~W~~G~~l~~l~~~~af~GY~Lpw 129 (200)
T cd00284 82 FFLMLYLHIFRGLYYG----SYKKPRE-LTWVIGVILLLLTMATAFMGYVLPW 129 (200)
T ss_pred HHHHHHHHHHHHHHHH----HhcchhH-HHHHHHHHHHHHHHHHHHcccccCc
Confidence 7777777777776542 1121112 2377888888888888888877653
No 66
>PRK11513 cytochrome b561; Provisional
Probab=35.96 E-value=1.7e+02 Score=23.81 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 028753 126 HQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKA 183 (204)
Q Consensus 126 H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~ 183 (204)
-..+=+.+.++++.|.+.|......+...+.....+|..+|..+.++.+.=+...+..
T Consensus 9 ~~~lHWl~a~li~~~~~~~~~~~~~~~~~~~~~~~~H~s~G~~vl~L~v~Rl~~r~~~ 66 (176)
T PRK11513 9 QIGIHWLVFLLVIVAYCAMEFRGFFPRSDRPLINMIHVSCGISILVLMVVRLLLRLKY 66 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3334445555556666666543221112244556789999999999999888877753
No 67
>PF10002 DUF2243: Predicted membrane protein (DUF2243); InterPro: IPR018719 This entry includes membrane proteins of unknown function.
Probab=35.52 E-value=2.4e+02 Score=22.82 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhhheec--ccCCCCChhhHHHHHHHHHHHHHHHHHhccCC-------CC-CCCcchhHhHHHHHHHH
Q 028753 99 LQMLSVVLATVGAIMSIRN--FENSFNNNHQRLGLALYGALWLQVSIGFFKPP-------RG-NKRRSMWYVVHWLLGTA 168 (204)
Q Consensus 99 lq~~av~laiiG~il~i~~--~~~~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~-------~~-~~~R~~~~~~H~~lG~~ 168 (204)
++....+++++|+.+-+.. ..+...+.-...|-++++.-..|.+=|.+-|+ +. ....-.|+..=..+|.+
T Consensus 51 FHa~~~~~~~~Gl~lL~r~~~r~~~~~~~~~~~g~~l~G~G~Fnl~dG~vdH~lLgiH~Vr~~~~~~l~wDl~wl~~g~l 130 (143)
T PF10002_consen 51 FHAFTWVATVAGLFLLWRADRRRRRPWSGRRLWGGVLLGWGLFNLVDGVVDHKLLGIHHVRYPGPNPLPWDLGWLAFGAL 130 (143)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCccchhhHHHHHHHhhHHHHHHHHHHhhhhccceecccCCCccchhHHHHHHHHH
Confidence 3456667777888777633 22345577888999999999999999975442 33 34455677665567777
Q ss_pred HHHHHHH
Q 028753 169 ISLVGII 175 (204)
Q Consensus 169 ~~~Lgiv 175 (204)
.++.|+.
T Consensus 131 ll~~G~~ 137 (143)
T PF10002_consen 131 LLLAGWL 137 (143)
T ss_pred HHHHHHH
Confidence 7776654
No 68
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=34.69 E-value=1.4e+02 Score=19.94 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=17.5
Q ss_pred CCcchhHhHHHHHHHHHHHHHHH
Q 028753 153 KRRSMWYVVHWLLGTAISLVGII 175 (204)
Q Consensus 153 ~~R~~~~~~H~~lG~~~~~Lgiv 175 (204)
..|..|+..|.+.|....++...
T Consensus 36 ~~~~~~~~iH~~~g~~~~~l~~~ 58 (64)
T PF14358_consen 36 LNKHFWRNIHLWAGYLFLILIIL 58 (64)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 44678888888888888877654
No 69
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=33.58 E-value=2.6e+02 Score=22.68 Aligned_cols=58 Identities=10% Similarity=0.021 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCC--CCCC---------------CcchhHhHHHHHHHHHHHHHHHHHHHhhh
Q 028753 125 NHQRLGLALYGALWLQVSIGFFKPP--RGNK---------------RRSMWYVVHWLLGTAISLVGIINIYTGLK 182 (204)
Q Consensus 125 ~H~~iGl~v~~l~~lQ~l~G~lrp~--~~~~---------------~R~~~~~~H~~lG~~~~~Lgivni~~Gl~ 182 (204)
..+..-++++.+..+|++.|+..-. .+.. .....+.+|.+.+.+++++-++=++..+.
T Consensus 115 ~~k~~~~~l~~~~~~~~lTG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~iH~~~a~~l~~~i~~Hi~~a~~ 189 (211)
T TIGR02125 115 LQFVAYFGFIVLILFMILTGLALYYYHNGLGGLLPSLFGWVEPLFGGLANVRFIHHLGMWAFVIFVPVHVYMAVR 189 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777888999999974311 0001 11124678999999988888888877764
No 70
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=33.11 E-value=1.4e+02 Score=19.50 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhheecccCCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHHHHHHHHH
Q 028753 103 SVVLATVGAIMSIRNFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGII 175 (204)
Q Consensus 103 av~laiiG~il~i~~~~~~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~~~~Lgiv 175 (204)
+.+..++|..+-..- +......-..+|+..+.-...|...++-+ + .+...++.+...|....++|+.
T Consensus 3 Gil~iv~Gi~~l~~p-~~~~~~~~~i~g~~~i~~Gi~~l~~~~~~-~----~~~~~~~~~l~~gi~~i~~Gi~ 69 (72)
T PF03729_consen 3 GILFIVLGILLLFNP-DASLAALAIILGIWLIISGIFQLISAFRR-R----KGSKGWWWSLLSGILSIVLGII 69 (72)
T ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c----ccchhhHHHHHHHHHHHHHHHH
Confidence 344444444433322 12234455777888888888888766642 1 1222356777788888877765
No 71
>PF12769 DUF3814: Domain of unknown function (DUF3814); InterPro: IPR024605 This entry represents the C-terminal domain of NAD(P) transhydrogenase, alpha subunit.
Probab=32.44 E-value=80 Score=23.43 Aligned_cols=49 Identities=24% Similarity=0.271 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHH---HHHHHhhheecccCCCCChhhHHHHHHHHHHHHHHHHHhc
Q 028753 95 LHIILQMLSVVL---ATVGAIMSIRNFENSFNNNHQRLGLALYGALWLQVSIGFF 146 (204)
Q Consensus 95 ~H~~lq~~av~l---aiiG~il~i~~~~~~f~~~H~~iGl~v~~l~~lQ~l~G~l 146 (204)
+|.++|..+-.+ .++|..+... ...+..-+.+|.+...+..+.+.+||.
T Consensus 25 LHTPLMS~tNAIsgii~vGa~~~~~---~~~~~~~~~lg~~Av~~a~iNv~GGF~ 76 (87)
T PF12769_consen 25 LHTPLMSVTNAISGIIIVGAMIAAG---SAPSTLAQVLGFIAVFLATINVVGGFL 76 (87)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHHHHHHhhchH
Confidence 577777764332 2333333322 225566777888888888888888875
No 72
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=32.23 E-value=2e+02 Score=22.59 Aligned_cols=53 Identities=9% Similarity=0.118 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhheecccCCCCChhhHHHHHHHHHHHHHHHHHhc
Q 028753 94 YLHIILQMLSVVLATVGAIMSIRNFENSFNNNHQRLGLALYGALWLQVSIGFF 146 (204)
Q Consensus 94 ~~H~~lq~~av~laiiG~il~i~~~~~~f~~~H~~iGl~v~~l~~lQ~l~G~l 146 (204)
..|.++..+..++.+++.+.++....+...-.|-.++..+....+.-.++-++
T Consensus 29 iinliiG~vT~l~VLvtii~afvf~~~~p~p~~iffavcI~l~~~s~~lLI~W 81 (118)
T PF10856_consen 29 IINLIIGAVTSLFVLVTIISAFVFPQDPPKPLHIFFAVCILLICISAILLIFW 81 (118)
T ss_pred EEEeehHHHHHHHHHHHHhheEEecCCCCCceEEehHHHHHHHHHHHHhheee
Confidence 35777888888888888888887765556666777777666666655555543
No 73
>COG2717 Predicted membrane protein [Function unknown]
Probab=31.80 E-value=96 Score=26.60 Aligned_cols=42 Identities=10% Similarity=0.127 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHHHH
Q 028753 56 AVHGLLLWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIILQM 101 (204)
Q Consensus 56 ~~HG~LM~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~ 101 (204)
..-..+-++||.+++|.++=..+..++.-+ +.|.++|+..=.
T Consensus 114 rpyitiG~iaflll~pLalTS~k~~~rrlG----~rW~~LHrLvYl 155 (209)
T COG2717 114 RPYITIGMIAFLLLIPLALTSFKWVRRRLG----KRWKKLHRLVYL 155 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHH
Confidence 345567789999999999988887765432 579999986533
No 74
>cd01660 ba3-like_Oxidase_I ba3-like heme-copper oxidase subunit I. The ba3 family of heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and some archaea which catalyze the reduction of O2 and simultaneously pump protons across the membrane. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. The ba3 family contains oxidases that lack the conserved residues that form the D- and K-pathways in CcO and ubiquinol oxidase. Instead they contain a potential alternative K-pathway. Additional proton channels have been proposed for this family of oxidases but none have been identified definitively. For general information on the heme-copper oxidase superfamily, please see cd00919.
Probab=31.52 E-value=1.9e+02 Score=27.45 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=34.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHh---HhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 028753 49 PQTASHIAVHGLLLWASMGFLTPVGIL---TIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMS 114 (204)
Q Consensus 49 ~~~~~~~~~HG~LM~vAw~iL~P~Gil---~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~ 114 (204)
..|...++.||..|...|....-.|.. +.|..++.. ..+.+-.....+...+.++...++..+
T Consensus 42 ~~y~~~~t~Hg~~mif~~~~~~~~g~~~y~vp~~~~~~~---~~prl~~~s~wl~~~g~~l~~~s~~~g 107 (473)
T cd01660 42 ILYYQGLTLHGVLLAIVFTTFFIMGFFYAIVARALLRSL---FNRRLAWAGFWLMVIGTVMAAVPILLG 107 (473)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---CcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 458899999999999777664333432 123222211 112233344455566666666665444
No 75
>TIGR00780 ccoN cytochrome c oxidase, cbb3-type, subunit I. Gene symbols ccoN and fixN are synonymous.
Probab=31.29 E-value=4.7e+02 Score=24.97 Aligned_cols=82 Identities=10% Similarity=0.008 Sum_probs=54.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhHh---hhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecccCCCCChh
Q 028753 50 QTASHIAVHGLLLWASMGFLTPVGILTI---RMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNNNH 126 (204)
Q Consensus 50 ~~~~~~~~HG~LM~vAw~iL~P~Gil~a---R~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~~~f~~~H 126 (204)
+...++-+|==.+..+|+...-.|.... |..++.. +.+.+-.++...-.+++++++++..++.... +++-..-
T Consensus 49 ~fgr~R~~Htn~~i~~~~~~~~~g~~yy~~~r~~~~~l---~~~~la~~~~~~~~~~~~~a~~~~~~G~~~g-~eY~e~~ 124 (474)
T TIGR00780 49 IFGRLRPLHTNAVIFAFGGGGLIATSYYVVQRTYHQRL---FGGIVGLFHFWGWQILIVLAVISLFAGLTQS-KEYAELE 124 (474)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---CcchHHHHHHHHHHHHHHHHHHHHhccCccC-cccccch
Confidence 3457788999899999988888887644 5554321 2233445577777888888888888888664 3444445
Q ss_pred hHHHHHHHH
Q 028753 127 QRLGLALYG 135 (204)
Q Consensus 127 ~~iGl~v~~ 135 (204)
-.+++.+++
T Consensus 125 ~~~~~~i~v 133 (474)
T TIGR00780 125 WPLDIIVTV 133 (474)
T ss_pred HHHHHHHHH
Confidence 566665554
No 76
>PRK10588 hypothetical protein; Provisional
Probab=30.91 E-value=2.4e+02 Score=21.35 Aligned_cols=72 Identities=25% Similarity=0.303 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhhheecc---cCCCCChhhHHHHHHHHHHHHHHHHHh-ccCCCCCCCcchhH-hHHHHHHHHHHHHH
Q 028753 99 LQMLSVVLATVGAIMSIRNF---ENSFNNNHQRLGLALYGALWLQVSIGF-FKPPRGNKRRSMWY-VVHWLLGTAISLVG 173 (204)
Q Consensus 99 lq~~av~laiiG~il~i~~~---~~~f~~~H~~iGl~v~~l~~lQ~l~G~-lrp~~~~~~R~~~~-~~H~~lG~~~~~Lg 173 (204)
++.++.++++.=+.+.+..- .++..+...+.|..++-.++.-.+-|+ ++ +++..|+ ..+-+.|..+.+.|
T Consensus 17 lRaLSliLAl~la~~v~w~P~~fa~~~~~~~~~~~~lliwavc~g~IhGVGF~-----Pr~~~Wq~lFsP~~a~~iL~~g 91 (97)
T PRK10588 17 LRALSLVMALLLAGCMFWDPSRFAAKTSSLEIWHGLLLMWAVCAGVIHGVGFR-----PQKVLWQGIFCPLPADIVLIVG 91 (97)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHcCCccHHHHHHHHHHHHHHHhhhcccc-----hhHHHHHHHHhhHHHHHHHHHH
Confidence 34566666555444444443 235778888889888877777777665 44 4455663 45667888777655
Q ss_pred HH
Q 028753 174 II 175 (204)
Q Consensus 174 iv 175 (204)
..
T Consensus 92 ~~ 93 (97)
T PRK10588 92 LI 93 (97)
T ss_pred HH
Confidence 43
No 77
>COG3658 Cytochrome b [Energy production and conversion]
Probab=30.84 E-value=1e+02 Score=25.80 Aligned_cols=54 Identities=19% Similarity=0.130 Sum_probs=37.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhccCCCC-------------------CCCcchhHhHHHHHHHHHHHHHHH
Q 028753 122 FNNNHQRLGLALYGALWLQVSIGFFKPPRG-------------------NKRRSMWYVVHWLLGTAISLVGII 175 (204)
Q Consensus 122 f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~-------------------~~~R~~~~~~H~~lG~~~~~Lgiv 175 (204)
-+.+|.++|++++.++.+-..=|.+-|... -+.|.-.-..|.-+|-+++..-+.
T Consensus 33 Gs~~H~wvGyav~allalRL~WG~igs~~ARf~af~pspa~a~~~lke~~~gr~~~h~gHNPlGAlmv~Amw~ 105 (192)
T COG3658 33 GSQLHTWVGYAVLALLALRLCWGIIGSDTARFSAFVPSPAGAREYLKEGIPGREHIHPGHNPLGALMVVAMWA 105 (192)
T ss_pred CCChhHHHHHHHHHHHHHHHHhcccccchhhhhccCCChHHHHHHHHhhccCCccCCCCCCchhHHHHHHHHH
Confidence 458999999999999999999887654311 123344455677788776654443
No 78
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=30.61 E-value=3.7e+02 Score=23.49 Aligned_cols=82 Identities=20% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhheecccCCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHHHHHHH
Q 028753 94 YLHIILQMLSVVLATVGAIMSIRNFENSFNNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVG 173 (204)
Q Consensus 94 ~~H~~lq~~av~laiiG~il~i~~~~~~f~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~~~~Lg 173 (204)
+.||..-.+..++.++.++..+...+. +..=.......++++.+|.++|...-..+- ..+..--.|-.++.+++.+-
T Consensus 69 ~~HR~~~~~~gl~~l~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~Q~~lG~~~V~~~l-~~~~~~~~Hl~~a~~~~~~l 145 (302)
T PF02628_consen 69 WGHRLLAGLVGLLILALAVWAWRKRRI--RRRLRWLALLALVLVILQGLLGAWTVLSGL-VSPYVVTLHLLLALLIFALL 145 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc--CcchHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 028753 174 IINIY 178 (204)
Q Consensus 174 ivni~ 178 (204)
.....
T Consensus 146 ~~~~~ 150 (302)
T PF02628_consen 146 VWLAL 150 (302)
T ss_pred HHHHH
No 79
>COG3671 Predicted membrane protein [Function unknown]
Probab=30.30 E-value=2.8e+02 Score=21.94 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=39.1
Q ss_pred HHHHHHHhHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhheecccCCCCChhhHHHHHHHHH----HHHHHHH
Q 028753 68 FLTPVGILTIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMSIRNFENSFNNNHQRLGLALYGA----LWLQVSI 143 (204)
Q Consensus 68 iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i~~~~~~f~~~H~~iGl~v~~l----~~lQ~l~ 143 (204)
++.-+|+++|-..|... ..|..-|-..|+=++.+++.+.++++... --.+|++++.. ++.-++.
T Consensus 39 it~lvgvi~AYv~rd~~-----~~~~~SHy~f~iRTFw~~vl~~iIg~Llt-------~lgiGv~i~~AlgvW~i~Riv~ 106 (125)
T COG3671 39 ITPLVGVIFAYVNRDKA-----DSIAASHYEFLIRTFWLAVLWWIIGLLLT-------FLGIGVVILVALGVWYIYRIVI 106 (125)
T ss_pred HHHHHHHHHHhcccccc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 55557888777666532 24677798888866555555554444331 01126555543 4566677
Q ss_pred Hhcc
Q 028753 144 GFFK 147 (204)
Q Consensus 144 G~lr 147 (204)
|+.+
T Consensus 107 G~~y 110 (125)
T COG3671 107 GFKY 110 (125)
T ss_pred HHHH
Confidence 8754
No 80
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=29.47 E-value=3.3e+02 Score=22.63 Aligned_cols=61 Identities=20% Similarity=0.182 Sum_probs=42.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhc--cCCC----CCCCcchhHhHHHHHHHHHHHHHHHHHHHhhh
Q 028753 122 FNNNHQRLGLALYGALWLQVSIGFF--KPPR----GNKRRSMWYVVHWLLGTAISLVGIINIYTGLK 182 (204)
Q Consensus 122 f~~~H~~iGl~v~~l~~lQ~l~G~l--rp~~----~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~ 182 (204)
++...+..-+.++.+..++++.|+. .|.. +.........+|.+.+.++++.-++=+|.++.
T Consensus 107 yN~~qk~~y~~~~~~~~~~~iTGl~l~~p~~~~~~~~~~~~~~~~~H~~~a~~~i~~iivHiy~a~~ 173 (211)
T PRK10639 107 YNFGQKCVFWAAIIFLVLLLVSGVIIWRPYFAPAFSIPVIRFALMLHSFAAVALIVVIMVHIYAALW 173 (211)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666666677778899999963 3421 11123455889999999999988888888764
No 81
>PF11158 DUF2938: Protein of unknown function (DUF2938); InterPro: IPR021329 This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.
Probab=28.06 E-value=1.1e+02 Score=24.70 Aligned_cols=48 Identities=23% Similarity=0.305 Sum_probs=31.4
Q ss_pred hHHHHHHH--HHHHHHHHHHh--c--cCCCCCCCcchhHhHHHHHHHHHHHHHH
Q 028753 127 QRLGLALY--GALWLQVSIGF--F--KPPRGNKRRSMWYVVHWLLGTAISLVGI 174 (204)
Q Consensus 127 ~~iGl~v~--~l~~lQ~l~G~--l--rp~~~~~~R~~~~~~H~~lG~~~~~Lgi 174 (204)
-.+|+++. ...+.||.+|. . +..++.+.|-.--..|..+|..+++.+.
T Consensus 95 li~G~~tvl~p~~imqP~lG~G~aas~tP~p~~~r~~sl~aH~vfG~gLyl~~~ 148 (150)
T PF11158_consen 95 LIFGLVTVLAPFFIMQPALGAGIAASKTPNPWKARLRSLIAHLVFGLGLYLSAL 148 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhccCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 34565443 56679999886 3 2223334455557789999999888764
No 82
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=26.59 E-value=1.5e+02 Score=26.74 Aligned_cols=62 Identities=10% Similarity=0.188 Sum_probs=41.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHh--c-cCC-----CCCCCcchhHhHHHHHHHHHHHHHHHHHHHhhhhc
Q 028753 123 NNNHQRLGLALYGALWLQVSIGF--F-KPP-----RGNKRRSMWYVVHWLLGTAISLVGIINIYTGLKAY 184 (204)
Q Consensus 123 ~~~H~~iGl~v~~l~~lQ~l~G~--l-rp~-----~~~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~ 184 (204)
-+.|..+|++.-++..+-.++-+ + +|. .+++.++.=..+-|+.+..+.+.|++.++..++..
T Consensus 43 ig~rg~vGI~fav~f~i~lvltLvnL~KHG~~~lp~eKRf~~iGRRwqWyW~~fv~a~~~iS~f~~IDVD 112 (296)
T PF10361_consen 43 IGTRGSVGIAFAVLFAIALVLTLVNLRKHGRLYLPLEKRFYPIGRRWQWYWMLFVCACGLISLFMSIDVD 112 (296)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhcccccchhHHHHHHHHHHHHHHHhhheeeeec
Confidence 46788999877666655554433 2 222 22334444466778899999999999998888753
No 83
>COG5658 Predicted integral membrane protein [Function unknown]
Probab=24.34 E-value=2.3e+02 Score=24.27 Aligned_cols=56 Identities=27% Similarity=0.444 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHh-ccCCCC-----------CCCcchhHhHHHHHHHHHHHHHHHHHHHhhhhc
Q 028753 129 LGLALYGALWLQVSIGF-FKPPRG-----------NKRRSMWYVVHWLLGTAISLVGIINIYTGLKAY 184 (204)
Q Consensus 129 iGl~v~~l~~lQ~l~G~-lrp~~~-----------~~~R~~~~~~H~~lG~~~~~Lgivni~~Gl~~~ 184 (204)
.|++.-+++++-.++.+ ++|+.+ .+-+..|+..|+.+|-..++.+.+..+-+...-
T Consensus 4 ~~lv~~gLvilagils~v~yp~~Pn~v~~~r~~~~~~d~~~wk~a~~~l~pl~vi~gl~~~~~~~l~~ 71 (204)
T COG5658 4 LGLVLAGLVILAGILSIVLYPKLPNEVVGHRTVDSSPDQAMWKKAGLFLGPLLVIGGLVTRYMSLLAG 71 (204)
T ss_pred cccHHHHHHHHHHHHHHHcCCCCCccceeeecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555555555555554 444422 344677899999999999998888887775443
No 84
>TIGR02112 cyd_oper_ybgE cyd operon protein YbgE. This model describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria.
Probab=23.66 E-value=3.2e+02 Score=20.47 Aligned_cols=70 Identities=23% Similarity=0.297 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhheecc---cCCCCChhhHHHHHHHHHHHHHHHHHh-ccCCCCCCCcchhH-hHHHHHHHHHHHHHH
Q 028753 100 QMLSVVLATVGAIMSIRNF---ENSFNNNHQRLGLALYGALWLQVSIGF-FKPPRGNKRRSMWY-VVHWLLGTAISLVGI 174 (204)
Q Consensus 100 q~~av~laiiG~il~i~~~---~~~f~~~H~~iGl~v~~l~~lQ~l~G~-lrp~~~~~~R~~~~-~~H~~lG~~~~~Lgi 174 (204)
+.++.+++..=+.+...+- .++..+...+.|..++-.++.-.+-|+ +|| ++..|+ ..+-+.|..+.+.+.
T Consensus 14 raLSlilAl~la~~v~w~P~~fa~~~g~~~~~~~~lliwavc~g~IhGVGF~P-----r~~~Wq~lF~P~~a~~iLi~~l 88 (93)
T TIGR02112 14 RALSFILAFLLAGCVFWDPNRFAAAIGGFNAVLALLMIWAVCILWIHGVGFRP-----RSTLWQLLFSPILGYIILIYLL 88 (93)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHcCCccHHHHHHHHHHHHHHHHhhccccc-----hHHHHHHHHhhHHHHHHHHHHH
Confidence 3556655554444444432 235678888888888888877777776 553 455553 445577777766544
No 85
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=23.63 E-value=1.6e+02 Score=17.50 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC
Q 028753 128 RLGLALYGALWLQVSIGFFKPPR 150 (204)
Q Consensus 128 ~iGl~v~~l~~lQ~l~G~lrp~~ 150 (204)
++|-++.....+=.+...+||+|
T Consensus 6 ~l~~~va~~L~vYL~~ALlrPEr 28 (29)
T PRK14759 6 SLAGAVSLGLLIYLTYALLRPER 28 (29)
T ss_pred HHHHHHHHHHHHHHHHHHhCccc
Confidence 45666666666666677788876
No 86
>cd01662 Ubiquinol_Oxidase_I Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges co
Probab=23.62 E-value=2.4e+02 Score=26.95 Aligned_cols=63 Identities=11% Similarity=0.134 Sum_probs=36.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhHh---hhcc-c-cccchhhhHHHHHHHHHHHHHHHHHHHHHhhhe
Q 028753 49 PQTASHIAVHGLLLWASMGFLTPVGILTI---RMSN-K-VDSVIKARVFVYLHIILQMLSVVLATVGAIMSI 115 (204)
Q Consensus 49 ~~~~~~~~~HG~LM~vAw~iL~P~Gil~a---R~~k-~-~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~i 115 (204)
+.|...++.||..|...|..-.-.|.... |..+ + ...+ .+=.....+...+.+++..++..+-
T Consensus 47 ~~Y~~~~T~Hg~~mif~~~~p~~~gf~~ylvp~~lg~~dl~~p----rln~~sfWl~~~~~~l~~~s~~~g~ 114 (501)
T cd01662 47 EHYNQIFTMHGTIMIFLFAMPLVFGLMNYLVPLQIGARDVAFP----RLNALSFWLFLFGGLLLNASLLIGG 114 (501)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCh----HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45889999999999988876655552211 2221 1 1111 1222344566667777666665543
No 87
>COG4244 Predicted membrane protein [Function unknown]
Probab=21.75 E-value=4.6e+02 Score=21.59 Aligned_cols=90 Identities=14% Similarity=0.074 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhheecc---cC-----CCCChhhHHHHHHHHHHHH-HHHHHhccCCCCCCCcchhHh
Q 028753 90 RVFVYLHIILQMLSVVLATVGAIMSIRNF---EN-----SFNNNHQRLGLALYGALWL-QVSIGFFKPPRGNKRRSMWYV 160 (204)
Q Consensus 90 ~~Wf~~H~~lq~~av~laiiG~il~i~~~---~~-----~f~~~H~~iGl~v~~l~~l-Q~l~G~lrp~~~~~~R~~~~~ 160 (204)
..|+..=+.....+.+.+....+.+.... ++ .-...|..+|.++.+.+.+ ...-.+.| .+...+ -.+
T Consensus 45 ~~~~~vs~wn~~~a~i~~~~A~~~g~~e~lla~~~~~a~~~a~wh~~lG~il~~~la~~~~~r~~~~--~~~~~~--v~~ 120 (160)
T COG4244 45 DRWFDVSWWNLFAALIAGFFAVIAGLFEFLLARPGGAAKQAAEWHHVLGNILLIVLAILTAWRYVHR--NDAVAA--VSP 120 (160)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCChhh--ccH
Confidence 35888888888888887777777766542 12 1246899999887755443 22222222 221111 112
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 028753 161 VHWLLGTAISLVGIINIYTGLKA 183 (204)
Q Consensus 161 ~H~~lG~~~~~Lgivni~~Gl~~ 183 (204)
.=-+++.++.++-..+.++|-.+
T Consensus 121 ~~L~lsl~~~~Lv~l~g~lG~~l 143 (160)
T COG4244 121 AGLLLSLATVLLVALQGYLGAQL 143 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 22367888888888888877665
No 88
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=21.38 E-value=2.4e+02 Score=20.42 Aligned_cols=27 Identities=22% Similarity=0.136 Sum_probs=11.9
Q ss_pred CchhHHHHHHHHhHHHHhhccccccccc
Q 028753 1 MKIFRFVAAFIVPSCYVIFLPFVGCLSN 28 (204)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (204)
|.+..- ..|...-+++-++.|..|...
T Consensus 1 MKi~kv-~~ff~~Ll~i~~l~p~~~~~~ 27 (84)
T PF09716_consen 1 MKISKV-FYFFAFLLAINLLTPCLCNNV 27 (84)
T ss_pred CcHHHH-HHHHHHHHHHHhCcCcccccc
Confidence 444433 333333344445555554443
No 89
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=21.21 E-value=86 Score=24.56 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=36.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhccCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHH
Q 028753 123 NNNHQRLGLALYGALWLQVSIGFFKPPRGNKRRSMWYVVHWLLGTAISLVGIINIYT 179 (204)
Q Consensus 123 ~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~~R~~~~~~H~~lG~~~~~Lgivni~~ 179 (204)
.-.|-.+|..+..++++-.+.++.+|.++.+ ..|..++..+++..+.++.+
T Consensus 28 riinliiG~vT~l~VLvtii~afvf~~~~p~------p~~iffavcI~l~~~s~~lL 78 (118)
T PF10856_consen 28 RIINLIIGAVTSLFVLVTIISAFVFPQDPPK------PLHIFFAVCILLICISAILL 78 (118)
T ss_pred EEEEeehHHHHHHHHHHHHhheEEecCCCCC------ceEEehHHHHHHHHHHHHhh
Confidence 3468899999999999999999998865432 24566666666655555443
No 90
>TIGR02891 CtaD_CoxA cytochrome c oxidase, subunit I. These families, as well as archaeal and eukaryotic cytochrome c subunit I's are included within the superfamily model, pfam00115.
Probab=21.12 E-value=2.9e+02 Score=26.37 Aligned_cols=64 Identities=9% Similarity=0.011 Sum_probs=35.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHh---HhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 028753 49 PQTASHIAVHGLLLWASMGFLTPVGIL---TIRMSNKVDSVIKARVFVYLHIILQMLSVVLATVGAIMS 114 (204)
Q Consensus 49 ~~~~~~~~~HG~LM~vAw~iL~P~Gil---~aR~~k~~~~~~~~~~Wf~~H~~lq~~av~laiiG~il~ 114 (204)
+.|...++.||..|...|..-+-.|.. +.|..+.. +-..+.+=.+...+...+.+++.+++..+
T Consensus 47 ~~y~~~~T~Hg~~mif~~~~p~~~g~~~~lvp~~lg~~--dl~~prln~~sfwl~~~~~~l~~~s~~~g 113 (506)
T TIGR02891 47 ETYNQLFTMHGTIMIFLFAVPILAGFGNYLLPLMIGAR--DMAFPRLNAFSYWLYLFGGLLLLASFFTG 113 (506)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cccchhHHHHHHHHHHHHHHHHHHHhccC
Confidence 358899999999999888755332222 22333211 00011122334556667777766666554
No 91
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=20.66 E-value=2e+02 Score=24.18 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhHhhhccccccchhhhHHHHHHHHH
Q 028753 62 LWASMGFLTPVGILTIRMSNKVDSVIKARVFVYLHIIL 99 (204)
Q Consensus 62 M~vAw~iL~P~Gil~aR~~k~~~~~~~~~~Wf~~H~~l 99 (204)
-.+||.++.|+++...+..++.-+ +.|..+|...
T Consensus 120 G~ia~~lLl~LaiTS~~~~~rrLg----~~Wk~LH~l~ 153 (205)
T PRK05419 120 GMAAFLILLPLALTSTRASQRRLG----KRWQKLHRLV 153 (205)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHH
Confidence 567999999999998886654322 3699999763
No 92
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=20.66 E-value=1.9e+02 Score=27.44 Aligned_cols=54 Identities=15% Similarity=-0.001 Sum_probs=31.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhccCCCCCC--CcchhHhHHHHHHHHHHHHHHHH
Q 028753 123 NNNHQRLGLALYGALWLQVSIGFFKPPRGNK--RRSMWYVVHWLLGTAISLVGIIN 176 (204)
Q Consensus 123 ~~~H~~iGl~v~~l~~lQ~l~G~lrp~~~~~--~R~~~~~~H~~lG~~~~~Lgivn 176 (204)
...=+.+|.+.+.++-+|.+++.=.|..... .-..-..+|++.|.++++++++-
T Consensus 38 ~~~~qf~g~iaL~~msl~~~LA~R~~~iE~~~~GlD~~Y~~HK~~sIlailL~l~H 93 (438)
T COG4097 38 LEFSQFLGFIALALMSLIFLLATRLPLIEAWFNGLDKIYRFHKYTSILAILLLLAH 93 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHhhhhhhhhHHhHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777766522221111 11223557788887777777765
Done!