BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028754
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54QA6|TRM11_DICDI tRNA (guanine(10)-N2)-methyltransferase homolog OS=Dictyostelium
discoideum GN=trmt11 PE=3 SV=1
Length = 507
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 89/146 (60%), Gaps = 8/146 (5%)
Query: 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRV 62
+G + DN+ PPWR + +FD+II DPPYG+RAG RK G ++ K V VP+ R
Sbjct: 287 LGTILCDNSCPPWR--VNSMFDSIITDPPYGIRAGARKIGFKENRKFV----PVPEGLRR 340
Query: 63 GHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLV-AS 121
HIP Y + + + DLL+LA + L++GGRLVY+ P D P HPC +L+ AS
Sbjct: 341 DHIPQCIDYSVPDVMADLLELAAKTLIVGGRLVYWLPT-TPDYKETDLPRHPCLRLITAS 399
Query: 122 SEQILSSRYSRVLLTMVKIGPYTEEI 147
QIL++R+ R L+TM KI Y + I
Sbjct: 400 CLQILTNRWGRRLVTMEKIIEYNDSI 425
>sp|Q6YJI5|TRM11_CHICK tRNA (guanine(10)-N2)-methyltransferase homolog OS=Gallus gallus
GN=TRMT11 PE=2 SV=1
Length = 461
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 83/141 (58%), Gaps = 8/141 (5%)
Query: 6 LRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHI 65
L +D++ P WR G +FDAII DPPYG+R R++G +K + + HI
Sbjct: 288 LVSDSSRPIWRKGT--LFDAIITDPPYGIREATRRTGSQK------ESVKSSERSTENHI 339
Query: 66 PSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASSEQI 125
++ Y LS+ DLL A LVMGGRLVY+ P+ R + T P HPC KL+++ EQ+
Sbjct: 340 IISSSYHLSDIFFDLLKFAAEYLVMGGRLVYWLPIYRPEYTEEIVPRHPCLKLISNCEQM 399
Query: 126 LSSRYSRVLLTMVKIGPYTEE 146
LSS SR L+TM K+ + ++
Sbjct: 400 LSSHTSRRLITMEKVKEFKDQ 420
>sp|Q6NS23|TRM11_XENLA tRNA (guanine(10)-N2)-methyltransferase homolog OS=Xenopus laevis
GN=trmt11 PE=2 SV=1
Length = 478
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 90/173 (52%), Gaps = 17/173 (9%)
Query: 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRV 62
+ +L +D + P WR +FDAII DPPYG+R RK+G +K ++ P+
Sbjct: 288 LDVLVSDASKPVWRKA--PLFDAIITDPPYGIRESTRKTGTQK---EIIKTELFPES--- 339
Query: 63 GHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASS 122
H+P Y LS+ DL A LV GGRLVY+ PV R + T P HPC KL+++
Sbjct: 340 -HVPVQLNYHLSDIFSDLFAFASEFLVTGGRLVYWLPVYRPEYTEEVLPRHPCLKLISNC 398
Query: 123 EQILSSRYSRVLLTMVKIGPYTE--------EIAETARRKHLEFRENHLKWLE 167
EQ+LSS SR L+TM K+ + E E + H FRE + L+
Sbjct: 399 EQMLSSHTSRRLITMEKVKEFEEKYQYAHLGEGQNLPYKGHNSFREKYFSGLK 451
>sp|Q7Z4G4|TRM11_HUMAN tRNA (guanine(10)-N2)-methyltransferase homolog OS=Homo sapiens
GN=TRMT11 PE=1 SV=1
Length = 463
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 84/142 (59%), Gaps = 7/142 (4%)
Query: 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLL-KGVVDPYTVPDDKR 61
+ +L +D + P WR G FDAII DPPYG+R R++G +K + KG+ P+
Sbjct: 284 LDVLVSDASKPSWRKGT--YFDAIITDPPYGIRESTRRTGSQKEIPKGIEKWEKCPE--- 338
Query: 62 VGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVAS 121
H+P + Y LS+ DLL+ A LV+GGRLVY+ PV + T P HPC +LV++
Sbjct: 339 -SHVPVSLSYHLSDMFLDLLNFAAETLVLGGRLVYWLPVYTPEYTEEMVPWHPCLELVSN 397
Query: 122 SEQILSSRYSRVLLTMVKIGPY 143
EQ LSS SR L+TM K+ +
Sbjct: 398 CEQKLSSHTSRRLITMEKVKKF 419
>sp|Q5R962|TRM11_PONAB tRNA (guanine(10)-N2)-methyltransferase homolog OS=Pongo abelii
GN=TRMT11 PE=2 SV=1
Length = 463
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 84/142 (59%), Gaps = 7/142 (4%)
Query: 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLL-KGVVDPYTVPDDKR 61
+ +L +D + P WR G FDAII DPPYG+R R++G +K + KG+ P+
Sbjct: 284 LDVLVSDASKPSWRKGT--YFDAIITDPPYGIRESTRRTGSQKEIPKGIEKWEKCPE--- 338
Query: 62 VGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVAS 121
H+P + Y LS+ DLL+ A LV+GGRLVY+ PV + T P HPC +L+++
Sbjct: 339 -SHVPVSLSYHLSDMFLDLLNFAAETLVLGGRLVYWLPVYTPEYTEEMVPWHPCLELISN 397
Query: 122 SEQILSSRYSRVLLTMVKIGPY 143
EQ LSS SR L+TM K+ +
Sbjct: 398 CEQKLSSHTSRRLITMEKVKKF 419
>sp|Q7TNK6|TRM11_RAT tRNA (guanine(10)-N2)-methyltransferase homolog OS=Rattus
norvegicus GN=Trmt11 PE=2 SV=1
Length = 463
Score = 107 bits (268), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 85/142 (59%), Gaps = 10/142 (7%)
Query: 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRK-LLKGVVDPYTVPDDKR 61
+ +L +D + P WR G FDAII DPPYG+R R++G +K +LKG+ P+
Sbjct: 284 LDVLVSDASKPSWRKG--TYFDAIITDPPYGIRESTRRTGSQKEILKGIEK---CPE--- 335
Query: 62 VGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVAS 121
H+P + Y LS+ DL++ A LV+GGRLVY+ PV + T P HPC +LV++
Sbjct: 336 -SHVPVSLTYHLSDMFLDLINFAAETLVLGGRLVYWLPVYTPEYTEKMVPWHPCLRLVSN 394
Query: 122 SEQILSSRYSRVLLTMVKIGPY 143
EQ LSS +R L+TM K+ +
Sbjct: 395 CEQKLSSHTARRLITMEKVKEF 416
>sp|Q05B63|TRM11_BOVIN tRNA (guanine(10)-N2)-methyltransferase homolog OS=Bos taurus
GN=TRMT11 PE=2 SV=1
Length = 460
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 84/142 (59%), Gaps = 10/142 (7%)
Query: 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLL-KGVVDPYTVPDDKR 61
+ +L +D + P WR G FDAII DPPYG+R R++G +K + KG+ P+
Sbjct: 284 LDVLVSDASKPSWRKGT--YFDAIITDPPYGIRESTRRTGSQKEIPKGIEK---CPE--- 335
Query: 62 VGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVAS 121
H+P + Y LS+ DLL+ + LV+GGRLVY+ PV + T P HPC KL+++
Sbjct: 336 -SHVPVSLSYHLSDMFFDLLNFSAETLVLGGRLVYWLPVYTPEYTEEMVPWHPCLKLISN 394
Query: 122 SEQILSSRYSRVLLTMVKIGPY 143
EQ LSS SR L+TM K+ +
Sbjct: 395 CEQKLSSHTSRRLITMEKVKEF 416
>sp|Q9CWH5|TRM11_MOUSE tRNA (guanine(10)-N2)-methyltransferase homolog OS=Mus musculus
GN=Trmt11 PE=2 SV=1
Length = 460
Score = 107 bits (266), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 84/142 (59%), Gaps = 10/142 (7%)
Query: 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLL-KGVVDPYTVPDDKR 61
+ +L +D + P WR G FDAII DPPYG+R R+SG +K + KG+ P+
Sbjct: 284 LDVLVSDASKPSWRKGT--YFDAIITDPPYGIRESTRRSGSQKDIPKGIEK---CPE--- 335
Query: 62 VGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVAS 121
H+P + Y LS+ DLL+ A LV+GGRLVY+ PV + T P HPC +L+++
Sbjct: 336 -SHVPVSLSYHLSDMFFDLLNFAAETLVLGGRLVYWLPVYTPEYTEEMVPWHPCLRLISN 394
Query: 122 SEQILSSRYSRVLLTMVKIGPY 143
EQ LSS +R L+TM K+ +
Sbjct: 395 CEQKLSSHTARRLITMEKVKEF 416
>sp|O94636|TRM11_SCHPO tRNA (guanine(10)-N2)-methyltransferase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trm11 PE=3 SV=2
Length = 469
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 67/129 (51%), Gaps = 13/129 (10%)
Query: 14 PWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRV--GHIPSTAPY 71
P R L + DAI+CDPPYGVRAG +K + K P P + H P Y
Sbjct: 305 PLRKNL--LLDAIVCDPPYGVRAGAKK-----IAKCSQRP---PKESSSTGNHYPKLEQY 354
Query: 72 CLSECVHDLLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASSEQILSSRYS 131
+S+ V+D++ A LV GGRLV + P + E+ + P HP L+ +S Q + +S
Sbjct: 355 QISDMVYDIICFASDRLVDGGRLVLWLPTITEEYGIDDIPSHPYLSLIYNSIQPF-THWS 413
Query: 132 RVLLTMVKI 140
R LLT ++
Sbjct: 414 RRLLTFQRL 422
>sp|Q12463|TRM11_YEAST tRNA (guanine(10)-N2)-methyltransferase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TRM11 PE=1 SV=1
Length = 433
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Query: 22 VFDAIICDPPYGVRAG----GRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECV 77
V D I+CDPPYG+R G K R L K ++ R +IP+ PY L +
Sbjct: 284 VIDTILCDPPYGIRESIKVLGAKDPERFLGKEDMEIDGEKAYLRRDYIPTKKPYALDSLL 343
Query: 78 HDLLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASSEQILSSRYSRVLLTM 137
DLL + L +GGRL ++ P + + P H +L + Q +++SR LL
Sbjct: 344 DDLLQYSSERLPIGGRLAFWMPTANDANIETIVPMHENLELKYNCVQEF-NKWSRRLLVY 402
Query: 138 VKIGP-YTEEIAETARRKHLEFRENHL 163
+ G + +R FRE +
Sbjct: 403 INRGSTFNGSSNHGIKRSKDNFRERYF 429
>sp|Q6LA55|YF49_SCHPO UPF0648 protein C3H5.09c OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC3H5.09c PE=3 SV=2
Length = 2699
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 114 PCFKLVASSEQILSSRYSRVLLTMVK--IGPYTEEIAETARRKHLEFRENHLKWLEDGNL 171
P F L +S Q S +R++ T K I P +E++ + + + + L+WLEDG++
Sbjct: 1259 PTFLLWCNSYQPALSDMTRIMDTFTKMPIDP-SEKLGFWDKIRLVAHSQIRLRWLEDGDV 1317
Query: 172 HSSVFASADPQV 183
S+ S DP V
Sbjct: 1318 FLSLKGSRDPYV 1329
>sp|P40369|ARLY_SCHPO Argininosuccinate lyase OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=arg7 PE=3 SV=2
Length = 461
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 82 DLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASSEQILSSRYSRVLLTMVKIG 141
D+ G M+ + G + L+ED P FK V+ S QIL+ S + + KI
Sbjct: 307 DMIGLMITVKGTPTTYNKDLQEDKE----PLFDAFKTVSDSLQILTGVVSTLTINPTKIA 362
Query: 142 P------YTEEIAETARRKHLEFRENH 162
++AE RK L FR+ H
Sbjct: 363 ESLTPDLLATDLAEYLVRKGLPFRQTH 389
>sp|O26820|TMG10_METTH tRNA (guanine(10)-N2)-dimethyltransferase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=trmG10 PE=3 SV=1
Length = 336
Score = 30.4 bits (67), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 19 LKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVD 52
L E DAI+ DPPYG+ A KL + +D
Sbjct: 249 LDEKVDAIVTDPPYGISASTAGEKSEKLYREFLD 282
>sp|P14385|MTTA_THEAQ Modification methylase TaqI OS=Thermus aquaticus GN=taqIM PE=1 SV=3
Length = 421
Score = 30.4 bits (67), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 19/99 (19%)
Query: 11 NLPPWRPGL---------KEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKR 61
+LPPW G+ E FD I+ +PPYG+ G + K V D Y
Sbjct: 78 DLPPWAEGILADFLLWEPGEAFDLILGNPPYGI-VGEASKYPIHVFKAVKDLYKKAFSTW 136
Query: 62 VGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYPV 100
G Y L L+ A R+L GG LV+ P
Sbjct: 137 KGK------YNLYGA---FLEKAVRLLKPGGVLVFVVPA 166
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.140 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,942,847
Number of Sequences: 539616
Number of extensions: 3552149
Number of successful extensions: 7704
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7679
Number of HSP's gapped (non-prelim): 15
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)