Query 028754
Match_columns 204
No_of_seqs 170 out of 321
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 16:27:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2671 Putative RNA methylase 100.0 5E-42 1.1E-46 309.4 5.3 156 1-166 265-420 (421)
2 COG1041 Predicted DNA modifica 99.7 7.9E-18 1.7E-22 152.9 10.1 97 5-139 249-346 (347)
3 TIGR01177 conserved hypothetic 99.6 1.8E-15 3.8E-20 135.5 7.4 98 3-137 232-329 (329)
4 COG4123 Predicted O-methyltran 99.0 2.9E-10 6.2E-15 99.8 3.0 117 3-142 97-215 (248)
5 PF01170 UPF0020: Putative RNA 98.9 8.8E-10 1.9E-14 91.4 3.4 63 3-101 90-152 (179)
6 PF13659 Methyltransf_26: Meth 98.7 6.6E-09 1.4E-13 78.0 1.5 65 2-100 51-117 (117)
7 PRK13699 putative methylase; P 98.2 1.8E-06 3.8E-11 74.5 4.2 77 21-122 19-95 (227)
8 PF01555 N6_N4_Mtase: DNA meth 98.1 3E-06 6.4E-11 69.5 3.2 98 23-143 1-114 (231)
9 PRK11524 putative methyltransf 97.9 1.4E-05 3E-10 70.6 4.9 71 4-100 10-82 (284)
10 PRK14967 putative methyltransf 97.7 0.00011 2.4E-09 62.2 6.6 76 4-101 87-162 (223)
11 TIGR03534 RF_mod_PrmC protein- 97.6 4.2E-05 9.2E-10 64.5 3.3 109 3-134 139-250 (251)
12 PRK10901 16S rRNA methyltransf 97.6 3.3E-05 7.2E-10 71.9 2.6 98 4-120 296-398 (427)
13 PF07669 Eco57I: Eco57I restri 97.6 8.3E-05 1.8E-09 56.8 3.9 53 22-101 2-54 (106)
14 PRK11783 rlmL 23S rRNA m(2)G24 97.6 0.00011 2.4E-09 72.7 5.6 64 3-99 285-348 (702)
15 TIGR03533 L3_gln_methyl protei 97.5 0.00016 3.4E-09 64.1 5.6 77 3-100 174-253 (284)
16 PF05175 MTS: Methyltransferas 97.5 0.00021 4.6E-09 58.2 5.6 62 3-102 83-144 (170)
17 PRK14901 16S rRNA methyltransf 97.5 1.8E-05 3.9E-10 73.8 -0.8 97 3-119 305-409 (434)
18 PRK14903 16S rRNA methyltransf 97.5 2.2E-05 4.7E-10 73.6 -0.3 98 3-120 290-392 (431)
19 PHA03412 putative methyltransf 97.5 0.00022 4.8E-09 62.6 5.9 67 3-103 99-165 (241)
20 TIGR00537 hemK_rel_arch HemK-r 97.5 0.00028 6E-09 57.5 5.9 96 4-122 69-164 (179)
21 COG0116 Predicted N6-adenine-s 97.4 0.00022 4.7E-09 66.4 5.5 62 4-99 284-345 (381)
22 PRK09328 N5-glutamine S-adenos 97.4 0.00042 9.2E-09 59.5 6.2 110 3-135 160-272 (275)
23 PF02384 N6_Mtase: N-6 DNA Met 97.3 0.00055 1.2E-08 60.4 6.0 77 5-101 109-186 (311)
24 PRK14968 putative methyltransf 97.2 0.00096 2.1E-08 53.6 6.5 100 3-124 75-174 (188)
25 PRK11805 N5-glutamine S-adenos 97.2 0.00054 1.2E-08 61.5 5.4 77 3-100 186-265 (307)
26 TIGR00446 nop2p NOL1/NOP2/sun 97.2 0.00023 5E-09 62.2 2.7 79 3-101 124-202 (264)
27 TIGR03704 PrmC_rel_meth putati 97.2 0.00068 1.5E-08 59.1 5.2 82 4-102 136-220 (251)
28 PRK14966 unknown domain/N5-glu 97.1 0.00057 1.2E-08 64.4 4.7 112 3-136 302-416 (423)
29 PRK14902 16S rRNA methyltransf 97.0 0.0002 4.2E-09 67.0 0.8 99 3-120 303-405 (444)
30 PRK14904 16S rRNA methyltransf 97.0 0.00032 6.9E-09 65.7 1.7 97 3-120 303-403 (445)
31 TIGR00536 hemK_fam HemK family 96.9 0.0017 3.8E-08 57.1 5.8 110 3-136 167-280 (284)
32 TIGR00563 rsmB ribosomal RNA s 96.8 0.00048 1E-08 64.1 1.4 95 6-119 294-393 (426)
33 TIGR02987 met_A_Alw26 type II 96.7 0.0015 3.3E-08 62.2 4.2 31 72-102 169-200 (524)
34 COG0144 Sun tRNA and rRNA cyto 96.7 0.00086 1.9E-08 61.5 2.3 101 4-121 211-315 (355)
35 PRK01544 bifunctional N5-gluta 96.5 0.0033 7.2E-08 60.2 4.8 104 4-129 192-298 (506)
36 PHA03411 putative methyltransf 96.5 0.0039 8.4E-08 56.0 4.8 94 3-122 111-213 (279)
37 PRK15001 SAM-dependent 23S rib 96.5 0.0058 1.3E-07 56.8 5.9 43 22-98 298-340 (378)
38 COG2813 RsmC 16S RNA G1207 met 96.4 0.0074 1.6E-07 54.7 6.0 43 21-97 223-265 (300)
39 COG2226 UbiE Methylase involve 96.4 0.0046 1E-07 54.2 4.5 53 3-97 103-155 (238)
40 PRK15128 23S rRNA m(5)C1962 me 96.3 0.0025 5.4E-08 59.4 2.7 64 3-97 273-338 (396)
41 PF01861 DUF43: Protein of unk 96.2 0.0061 1.3E-07 53.7 4.2 32 2-34 93-124 (243)
42 PRK09489 rsmC 16S ribosomal RN 96.1 0.014 3.1E-07 53.3 6.5 27 75-101 280-306 (342)
43 PRK00107 gidB 16S rRNA methylt 96.1 0.013 2.9E-07 49.1 5.6 62 77-139 124-186 (187)
44 PRK11783 rlmL 23S rRNA m(2)G24 95.7 0.0084 1.8E-07 59.5 3.5 65 3-97 591-655 (702)
45 COG1743 Adenine-specific DNA m 95.6 0.018 3.8E-07 58.1 5.2 93 71-163 561-675 (875)
46 COG2890 HemK Methylase of poly 95.4 0.032 6.9E-07 49.6 5.7 27 73-99 213-239 (280)
47 PRK11727 23S rRNA mA1618 methy 95.1 0.0088 1.9E-07 54.5 1.1 76 21-119 188-265 (321)
48 PF01209 Ubie_methyltran: ubiE 95.0 0.032 6.9E-07 48.3 4.2 54 2-97 99-152 (233)
49 PLN02232 ubiquinone biosynthes 94.9 0.054 1.2E-06 43.7 5.2 53 3-97 28-80 (160)
50 PRK11188 rrmJ 23S rRNA methylt 94.5 0.071 1.5E-06 45.1 5.2 25 75-99 142-166 (209)
51 TIGR00438 rrmJ cell division p 94.1 0.15 3.3E-06 41.8 6.1 26 75-100 123-148 (188)
52 PF08241 Methyltransf_11: Meth 93.8 0.067 1.5E-06 37.4 3.1 50 5-96 46-95 (95)
53 PRK11933 yebU rRNA (cytosine-C 93.5 0.054 1.2E-06 51.8 2.7 78 4-100 167-244 (470)
54 PRK10909 rsmD 16S rRNA m(2)G96 93.4 0.07 1.5E-06 45.3 3.0 28 4-33 105-132 (199)
55 PLN02233 ubiquinone biosynthes 93.3 0.19 4.1E-06 43.9 5.7 54 3-98 129-182 (261)
56 PF10237 N6-adenineMlase: Prob 93.3 0.13 2.8E-06 42.7 4.4 33 6-38 69-102 (162)
57 COG0286 HsdM Type I restrictio 93.2 0.27 5.9E-06 47.1 7.0 123 3-142 243-378 (489)
58 cd02440 AdoMet_MTases S-adenos 92.8 0.21 4.5E-06 34.1 4.3 55 3-97 49-103 (107)
59 PF10672 Methyltrans_SAM: S-ad 92.6 0.14 3E-06 46.1 3.8 26 72-97 212-237 (286)
60 TIGR02752 MenG_heptapren 2-hep 92.2 0.32 7E-06 40.6 5.5 22 78-99 131-152 (231)
61 COG1092 Predicted SAM-dependen 91.8 0.26 5.5E-06 46.3 4.7 47 21-97 289-335 (393)
62 PRK00811 spermidine synthase; 91.6 0.14 3.1E-06 45.3 2.7 22 78-99 171-192 (283)
63 PLN02672 methionine S-methyltr 91.4 0.5 1.1E-05 49.6 6.8 112 3-120 186-300 (1082)
64 TIGR00138 gidB 16S rRNA methyl 91.0 0.26 5.6E-06 40.8 3.6 25 77-101 121-145 (181)
65 PRK04266 fibrillarin; Provisio 90.4 0.63 1.4E-05 40.1 5.6 23 78-100 156-178 (226)
66 COG0863 DNA modification methy 90.4 0.18 3.8E-06 43.6 2.1 87 22-122 35-122 (302)
67 PF03602 Cons_hypoth95: Conser 90.2 0.87 1.9E-05 38.0 6.1 14 21-34 113-126 (183)
68 PF01189 Nol1_Nop2_Fmu: NOL1/N 89.9 0.18 4E-06 44.7 1.8 52 71-122 188-247 (283)
69 PF05148 Methyltransf_8: Hypot 89.3 0.59 1.3E-05 40.7 4.4 92 4-142 107-200 (219)
70 PRK01581 speE spermidine synth 89.2 0.34 7.4E-06 45.3 3.1 20 78-97 248-267 (374)
71 PLN02244 tocopherol O-methyltr 88.8 0.92 2E-05 41.1 5.6 56 3-100 170-225 (340)
72 COG2521 Predicted archaeal met 88.8 0.24 5.3E-06 44.2 1.8 18 20-37 203-220 (287)
73 PF11599 AviRa: RRNA methyltra 88.7 0.6 1.3E-05 41.1 4.1 71 1-104 145-217 (246)
74 TIGR00417 speE spermidine synt 88.2 0.56 1.2E-05 41.0 3.7 22 78-99 166-187 (270)
75 PRK10258 biotin biosynthesis p 88.2 0.99 2.1E-05 38.4 5.1 56 4-101 88-143 (251)
76 PF05063 MT-A70: MT-A70 ; Int 88.1 0.52 1.1E-05 38.7 3.2 76 23-122 1-76 (176)
77 PF12847 Methyltransf_18: Meth 87.9 0.84 1.8E-05 33.3 3.9 23 75-97 88-110 (112)
78 PRK11088 rrmA 23S rRNA methylt 86.6 1.5 3.3E-05 38.1 5.4 23 3-28 135-157 (272)
79 COG1568 Predicted methyltransf 85.9 0.22 4.8E-06 45.4 -0.1 31 3-34 203-233 (354)
80 TIGR01934 MenG_MenH_UbiE ubiqu 85.9 1.9 4.2E-05 35.1 5.5 20 78-97 123-142 (223)
81 PTZ00098 phosphoethanolamine N 85.4 1.4 3.1E-05 38.4 4.6 25 77-101 135-159 (263)
82 KOG3045 Predicted RNA methylas 85.4 1.2 2.6E-05 40.4 4.2 20 77-96 243-262 (325)
83 PRK00121 trmB tRNA (guanine-N( 85.3 0.81 1.7E-05 38.3 3.0 25 77-101 135-159 (202)
84 PRK03612 spermidine synthase; 85.1 0.66 1.4E-05 44.7 2.6 21 78-98 395-415 (521)
85 PF08704 GCD14: tRNA methyltra 85.0 0.57 1.2E-05 41.3 2.0 41 80-121 127-169 (247)
86 KOG3420 Predicted RNA methylas 84.9 0.8 1.7E-05 38.4 2.7 32 3-37 98-129 (185)
87 smart00650 rADc Ribosomal RNA 84.8 0.64 1.4E-05 37.4 2.1 29 3-34 61-89 (169)
88 PF13847 Methyltransf_31: Meth 84.4 1.9 4.2E-05 33.8 4.6 55 3-100 56-112 (152)
89 PRK11873 arsM arsenite S-adeno 84.3 2 4.3E-05 37.1 5.0 20 78-97 163-182 (272)
90 COG2263 Predicted RNA methylas 83.6 0.78 1.7E-05 39.4 2.2 27 3-35 95-121 (198)
91 PRK08317 hypothetical protein; 83.6 2.6 5.5E-05 34.4 5.2 23 78-100 104-126 (241)
92 PRK00216 ubiE ubiquinone/menaq 83.3 2.9 6.3E-05 34.4 5.5 21 78-98 138-158 (239)
93 PF06080 DUF938: Protein of un 83.3 2.7 6E-05 36.2 5.4 31 74-104 117-147 (204)
94 TIGR02072 BioC biotin biosynth 82.9 2.4 5.2E-05 34.7 4.8 24 78-101 115-138 (240)
95 PLN02336 phosphoethanolamine N 82.8 2.9 6.3E-05 39.1 5.9 57 3-101 316-372 (475)
96 TIGR00095 RNA methyltransferas 82.6 2.1 4.6E-05 35.7 4.4 30 4-34 102-133 (189)
97 TIGR00091 tRNA (guanine-N(7)-) 82.5 0.45 9.8E-06 39.4 0.3 44 77-120 111-155 (194)
98 PLN02490 MPBQ/MSBQ methyltrans 82.1 2.4 5.2E-05 39.0 4.9 23 78-100 195-217 (340)
99 TIGR00497 hsdM type I restrict 81.7 2.7 5.8E-05 40.1 5.3 66 22-102 293-359 (501)
100 PF09445 Methyltransf_15: RNA 80.7 0.36 7.9E-06 40.1 -0.9 76 3-104 50-125 (163)
101 PRK06922 hypothetical protein; 80.1 3 6.6E-05 41.9 5.1 65 3-97 469-536 (677)
102 PLN02336 phosphoethanolamine N 80.1 2.9 6.2E-05 39.1 4.8 21 77-97 121-141 (475)
103 smart00138 MeTrc Methyltransfe 79.7 3.5 7.6E-05 36.1 4.9 22 76-97 220-241 (264)
104 COG0742 N6-adenine-specific me 79.2 2.5 5.3E-05 36.0 3.6 31 3-33 95-125 (187)
105 PRK12335 tellurite resistance 79.1 8.6 0.00019 33.8 7.2 27 76-102 201-227 (287)
106 TIGR00477 tehB tellurite resis 78.9 3.9 8.4E-05 33.9 4.8 22 76-97 111-132 (195)
107 KOG1540 Ubiquinone biosynthesi 77.7 4.6 0.0001 36.5 5.1 20 77-96 193-212 (296)
108 PRK15068 tRNA mo(5)U34 methylt 76.7 6.6 0.00014 35.5 5.9 22 78-99 206-227 (322)
109 PF13649 Methyltransf_25: Meth 76.2 1.8 3.9E-05 31.5 1.8 52 2-92 50-101 (101)
110 TIGR01712 phage_N6A_met phage 75.4 5.1 0.00011 33.6 4.5 10 25-34 64-73 (166)
111 PRK08287 cobalt-precorrin-6Y C 75.1 2.4 5.3E-05 34.5 2.5 46 77-122 110-155 (187)
112 KOG2904 Predicted methyltransf 74.7 5.5 0.00012 36.5 4.7 27 72-98 259-285 (328)
113 TIGR00080 pimt protein-L-isoas 72.1 5.6 0.00012 33.3 4.0 15 84-98 163-177 (215)
114 KOG3350 Uncharacterized conser 72.0 1.8 3.9E-05 37.2 1.0 22 19-40 132-153 (217)
115 PRK13944 protein-L-isoaspartat 71.7 6.5 0.00014 32.8 4.3 14 84-97 159-172 (205)
116 PRK13942 protein-L-isoaspartat 70.6 6.4 0.00014 33.1 4.1 14 85-98 163-176 (212)
117 COG1553 DsrE Uncharacterized c 70.5 2.7 5.9E-05 33.7 1.6 19 79-97 19-37 (126)
118 PRK14896 ksgA 16S ribosomal RN 69.8 3.5 7.5E-05 35.8 2.3 28 3-35 77-104 (258)
119 PRK13168 rumA 23S rRNA m(5)U19 69.2 2.9 6.2E-05 39.2 1.8 28 3-33 347-378 (443)
120 TIGR00006 S-adenosyl-methyltra 68.4 5 0.00011 36.5 3.1 27 76-102 218-244 (305)
121 PF11968 DUF3321: Putative met 68.2 6 0.00013 34.6 3.4 82 4-121 86-179 (219)
122 PLN02366 spermidine synthase 67.3 6.8 0.00015 35.4 3.7 19 78-96 186-204 (308)
123 PRK00312 pcm protein-L-isoaspa 66.7 11 0.00025 31.1 4.8 17 83-99 160-176 (212)
124 KOG2356 Transcriptional activa 66.4 5.2 0.00011 36.9 2.8 50 21-98 183-233 (366)
125 COG0275 Predicted S-adenosylme 66.3 5.9 0.00013 36.3 3.1 29 75-103 221-249 (314)
126 TIGR02469 CbiT precorrin-6Y C5 66.0 6.1 0.00013 28.9 2.7 21 77-97 101-121 (124)
127 COG2519 GCD14 tRNA(1-methylade 65.7 4.7 0.0001 36.0 2.3 25 78-102 175-199 (256)
128 PLN02396 hexaprenyldihydroxybe 65.7 6.1 0.00013 36.0 3.1 22 78-99 215-236 (322)
129 PLN02823 spermine synthase 65.5 5.4 0.00012 36.6 2.8 20 79-98 200-220 (336)
130 PRK00050 16S rRNA m(4)C1402 me 65.4 6.3 0.00014 35.7 3.1 26 76-101 214-239 (296)
131 PTZ00146 fibrillarin; Provisio 65.2 14 0.00029 33.6 5.2 22 78-99 217-238 (293)
132 PRK03522 rumB 23S rRNA methylu 64.9 2.4 5.2E-05 37.9 0.3 27 3-31 223-249 (315)
133 PF05401 NodS: Nodulation prot 62.4 9.5 0.00021 32.9 3.5 23 75-97 123-145 (201)
134 PRK04457 spermidine synthase; 60.7 11 0.00024 32.9 3.8 22 77-98 156-177 (262)
135 PF01795 Methyltransf_5: MraW 59.7 6.5 0.00014 35.9 2.2 28 76-103 219-246 (310)
136 KOG2198 tRNA cytosine-5-methyl 58.1 9.6 0.00021 35.8 3.0 60 21-97 235-295 (375)
137 PF01564 Spermine_synth: Sperm 57.9 16 0.00034 31.8 4.2 24 78-101 171-194 (246)
138 KOG1122 tRNA and rRNA cytosine 57.7 9 0.0002 36.8 2.8 50 73-122 346-399 (460)
139 PF10354 DUF2431: Domain of un 57.2 15 0.00033 30.2 3.8 50 73-122 100-151 (166)
140 PF13489 Methyltransf_23: Meth 57.1 9.1 0.0002 29.2 2.4 25 77-101 94-118 (161)
141 PTZ00338 dimethyladenosine tra 56.5 5.9 0.00013 35.5 1.4 31 3-38 87-117 (294)
142 TIGR02085 meth_trns_rumB 23S r 56.1 4 8.6E-05 37.6 0.2 27 4-32 284-310 (374)
143 PF01728 FtsJ: FtsJ-like methy 53.7 16 0.00036 29.3 3.4 28 71-98 112-139 (181)
144 PF08242 Methyltransf_12: Meth 53.2 11 0.00024 26.9 2.1 20 75-94 80-99 (99)
145 PRK00274 ksgA 16S ribosomal RN 52.2 7.7 0.00017 34.0 1.3 31 3-36 89-119 (272)
146 PLN02781 Probable caffeoyl-CoA 52.1 17 0.00038 31.1 3.5 20 77-96 157-176 (234)
147 PRK14121 tRNA (guanine-N(7)-)- 51.9 22 0.00047 33.5 4.3 28 77-106 214-241 (390)
148 COG2242 CobL Precorrin-6B meth 51.7 13 0.00027 31.8 2.5 22 77-98 114-135 (187)
149 PRK07402 precorrin-6B methylas 51.2 16 0.00035 29.9 3.1 25 77-101 121-145 (196)
150 PRK00517 prmA ribosomal protei 51.1 9.6 0.00021 32.8 1.7 58 74-134 189-246 (250)
151 TIGR00308 TRM1 tRNA(guanine-26 49.5 20 0.00044 33.3 3.7 19 79-97 128-146 (374)
152 PRK14103 trans-aconitate 2-met 47.3 18 0.00038 30.9 2.8 23 78-100 106-128 (255)
153 PRK00377 cbiT cobalt-precorrin 47.2 21 0.00046 29.4 3.1 25 77-101 124-148 (198)
154 PF01234 NNMT_PNMT_TEMT: NNMT/ 41.5 21 0.00046 31.7 2.4 24 74-97 175-198 (256)
155 COG0293 FtsJ 23S rRNA methylas 41.4 36 0.00079 29.4 3.8 74 3-106 87-165 (205)
156 PRK05785 hypothetical protein; 41.1 53 0.0012 27.9 4.8 26 5-35 96-121 (226)
157 PF05869 Dam: DNA N-6-adenine- 40.8 27 0.00059 29.4 2.9 25 77-101 108-132 (181)
158 PF02353 CMAS: Mycolic acid cy 39.9 22 0.00048 31.5 2.3 19 77-95 145-163 (273)
159 PRK13256 thiopurine S-methyltr 39.2 86 0.0019 27.2 5.8 24 75-98 140-163 (226)
160 PRK11036 putative S-adenosyl-L 38.8 30 0.00065 29.6 2.9 23 78-100 129-151 (255)
161 PRK13943 protein-L-isoaspartat 37.9 54 0.0012 29.9 4.5 17 84-100 166-182 (322)
162 PRK01683 trans-aconitate 2-met 37.4 34 0.00074 29.0 3.0 24 78-101 110-133 (258)
163 smart00828 PKS_MT Methyltransf 37.1 31 0.00066 28.5 2.6 23 78-100 84-106 (224)
164 TIGR02716 C20_methyl_CrtF C-20 36.6 39 0.00084 29.7 3.3 23 75-97 231-253 (306)
165 PRK10904 DNA adenine methylase 36.5 71 0.0015 28.1 5.0 22 75-96 204-225 (271)
166 PLN02476 O-methyltransferase 36.1 41 0.0009 30.2 3.4 20 77-96 207-226 (278)
167 PRK11207 tellurite resistance 35.0 60 0.0013 26.7 4.1 23 76-98 112-134 (197)
168 PRK05031 tRNA (uracil-5-)-meth 33.8 21 0.00046 32.7 1.3 11 22-32 288-298 (362)
169 PRK00536 speE spermidine synth 33.7 53 0.0011 29.2 3.7 10 21-30 138-147 (262)
170 KOG3201 Uncharacterized conser 32.4 42 0.00092 28.7 2.7 30 72-101 114-143 (201)
171 PRK15451 tRNA cmo(5)U34 methyl 32.2 41 0.00089 28.7 2.7 20 78-97 144-163 (247)
172 TIGR00452 methyltransferase, p 31.9 62 0.0014 29.4 3.9 24 78-101 205-228 (314)
173 COG0338 Dam Site-specific DNA 31.7 25 0.00054 31.6 1.3 26 75-100 204-229 (274)
174 PRK04338 N(2),N(2)-dimethylgua 31.0 61 0.0013 30.2 3.8 10 22-31 125-134 (382)
175 COG0220 Predicted S-adenosylme 29.6 21 0.00045 31.1 0.4 31 75-107 141-171 (227)
176 PF06962 rRNA_methylase: Putat 28.7 32 0.00069 28.0 1.3 62 75-139 69-140 (140)
177 PF02086 MethyltransfD12: D12 28.6 27 0.00058 29.4 0.9 17 22-38 177-193 (260)
178 PRK05134 bifunctional 3-demeth 28.6 58 0.0013 27.0 3.0 22 78-99 131-152 (233)
179 PF07942 N2227: N2227-like pro 27.8 68 0.0015 28.7 3.4 20 75-94 179-198 (270)
180 TIGR02143 trmA_only tRNA (urac 27.5 33 0.00072 31.3 1.4 14 22-38 279-292 (353)
181 TIGR00406 prmA ribosomal prote 27.4 60 0.0013 28.6 2.9 26 74-99 235-260 (288)
182 TIGR00740 methyltransferase, p 27.3 49 0.0011 27.8 2.3 23 77-99 140-162 (239)
183 KOG4300 Predicted methyltransf 26.7 48 0.001 29.4 2.1 21 79-99 163-183 (252)
184 KOG1541 Predicted protein carb 25.4 62 0.0013 29.0 2.6 23 3-28 95-118 (270)
185 TIGR00571 dam DNA adenine meth 25.1 38 0.00083 29.6 1.3 11 24-34 174-184 (266)
186 COG0357 GidB Predicted S-adeno 24.7 48 0.001 28.7 1.8 65 77-141 147-214 (215)
187 TIGR00479 rumA 23S rRNA (uraci 23.6 44 0.00094 31.0 1.4 28 4-32 343-372 (431)
188 PF01269 Fibrillarin: Fibrilla 23.0 86 0.0019 27.7 3.0 50 78-127 158-217 (229)
189 PF08351 DUF1726: Domain of un 22.9 89 0.0019 23.3 2.7 28 74-101 21-48 (92)
190 KOG1270 Methyltransferases [Co 22.7 60 0.0013 29.5 2.1 20 77-96 174-193 (282)
191 PF04378 RsmJ: Ribosomal RNA s 22.5 1.1E+02 0.0024 27.0 3.7 13 90-102 156-168 (245)
192 PRK11705 cyclopropane fatty ac 22.0 98 0.0021 28.7 3.4 25 77-101 246-270 (383)
193 PF03269 DUF268: Caenorhabditi 21.9 82 0.0018 26.7 2.6 22 81-102 94-115 (177)
194 PF03291 Pox_MCEL: mRNA cappin 21.6 84 0.0018 28.8 2.8 30 72-101 160-189 (331)
195 COG2894 MinD Septum formation 21.6 36 0.00078 30.5 0.4 19 21-39 112-130 (272)
196 TIGR03840 TMPT_Se_Te thiopurin 21.4 1E+02 0.0022 26.2 3.1 23 75-97 129-151 (213)
197 PF02390 Methyltransf_4: Putat 20.7 61 0.0013 27.1 1.6 42 77-120 112-157 (195)
198 PF00107 ADH_zinc_N: Zinc-bind 20.2 68 0.0015 23.7 1.6 20 78-97 69-88 (130)
199 PF02527 GidB: rRNA small subu 20.2 80 0.0017 26.4 2.2 22 77-98 127-148 (184)
No 1
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=100.00 E-value=5e-42 Score=309.42 Aligned_cols=156 Identities=40% Similarity=0.655 Sum_probs=136.7
Q ss_pred CCCceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHH
Q 028754 1 MPIGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDL 80 (204)
Q Consensus 1 ~p~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DL 80 (204)
+++||++||++++|||+++ .||||||||||||||++||+|+++..+.. .++.+.+|+|.+.+|++.+|+.||
T Consensus 265 ~fldvl~~D~sn~~~rsn~--~fDaIvcDPPYGVRe~~rk~~~k~~~r~~------~~~~~~~h~p~~~~ysl~~~v~dl 336 (421)
T KOG2671|consen 265 QFLDVLTADFSNPPLRSNL--KFDAIVCDPPYGVREGARKTGKKKSVRTT------EESSRGDHYPSTEQYSLSSLVYDL 336 (421)
T ss_pred hhhheeeecccCcchhhcc--eeeEEEeCCCcchhhhhhhhcccCcccCc------ccccccccCCccchhHHHHHHhhH
Confidence 4789999999999999988 99999999999999999999988776643 236899999999999999999999
Q ss_pred HHHHhcccccCCEEEEEEeeccCCCCCCCCCCCCCeeEEeEEEEecCCceeEEEEEEEEcCCCcHHHHHHHHHhhhhhhH
Q 028754 81 LDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASSEQILSSRYSRVLLTMVKIGPYTEEIAETARRKHLEFRE 160 (204)
Q Consensus 81 L~~Aa~lL~~gGRLvf~LP~~~~e~~e~~lp~h~gl~Lv~~~~Q~l~~k~sR~Litm~K~~~~~~~~~~~~~~~~~~fr~ 160 (204)
|.+++++|+.|||||||+|+..+++.+..+|.|++|.|+++|+|.++ +|+|+|+||+|...|............++ |+
T Consensus 337 l~fss~~L~~ggrlv~w~p~~~e~~~~~~~P~h~~lsl~~ns~q~~~-~~srrllt~~k~~~~~~~~S~~~v~~~~~-r~ 414 (421)
T KOG2671|consen 337 LCFSSRRLVDGGRLVFWLPTITEEYGEDDIPSHPYLSLIYNSEQPFT-HWSRRLLTYQKLPRYSDSKSLNLVPKINN-RT 414 (421)
T ss_pred HHhhHhhhhcCceEEEecCchhhccCcccCCCCcchhhhhhhccccc-hhhhhheeeeeccccCcccccccCCchhh-cc
Confidence 99999999999999999999999999999999999999999999999 99999999999998754333222222233 88
Q ss_pred hhhccc
Q 028754 161 NHLKWL 166 (204)
Q Consensus 161 ~~~~~~ 166 (204)
+||.++
T Consensus 415 ~~~~N~ 420 (421)
T KOG2671|consen 415 RYFNNF 420 (421)
T ss_pred hhhhcc
Confidence 887654
No 2
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.74 E-value=7.9e-18 Score=152.92 Aligned_cols=97 Identities=29% Similarity=0.396 Sum_probs=82.9
Q ss_pred eeEe-eCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHHH
Q 028754 5 LLRA-DNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDL 83 (204)
Q Consensus 5 vl~~-D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~~ 83 (204)
++.+ |+++.|+|.+ .|||||||||||++++.+.. .+++|+.++|+.
T Consensus 249 ~~~~~Da~~lpl~~~---~vdaIatDPPYGrst~~~~~------------------------------~l~~Ly~~~le~ 295 (347)
T COG1041 249 VLKVLDATNLPLRDN---SVDAIATDPPYGRSTKIKGE------------------------------GLDELYEEALES 295 (347)
T ss_pred EEEecccccCCCCCC---ccceEEecCCCCcccccccc------------------------------cHHHHHHHHHHH
Confidence 4555 9999999986 79999999999999988631 289999999999
Q ss_pred HhcccccCCEEEEEEeeccCCCCCCCCCCCCCeeEEeEEEEecCCceeEEEEEEEE
Q 028754 84 AGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASSEQILSSRYSRVLLTMVK 139 (204)
Q Consensus 84 Aa~lL~~gGRLvf~LP~~~~e~~e~~lp~h~gl~Lv~~~~Q~l~~k~sR~Litm~K 139 (204)
|.++|++||++|||+|... .......+|+++..+.|..|++++|.+.++++
T Consensus 296 ~~evLk~gG~~vf~~p~~~-----~~~~~~~~f~v~~~~~~~~H~sLtR~i~v~~~ 346 (347)
T COG1041 296 ASEVLKPGGRIVFAAPRDP-----RHELEELGFKVLGRFTMRVHGSLTRVIYVVRK 346 (347)
T ss_pred HHHHhhcCcEEEEecCCcc-----hhhHhhcCceEEEEEEEeecCceEEEEEEEec
Confidence 9999999999999999221 12223559999999999999999999999976
No 3
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.59 E-value=1.8e-15 Score=135.49 Aligned_cols=98 Identities=22% Similarity=0.254 Sum_probs=82.2
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~ 82 (204)
++++.+|+++.|++.+ .||+||||||||+|++... ....+++.++|+
T Consensus 232 i~~~~~D~~~l~~~~~---~~D~Iv~dPPyg~~~~~~~------------------------------~~~~~l~~~~l~ 278 (329)
T TIGR01177 232 FFVKRGDATKLPLSSE---SVDAIATDPPYGRSTTAAG------------------------------DGLESLYERSLE 278 (329)
T ss_pred CeEEecchhcCCcccC---CCCEEEECCCCcCcccccC------------------------------CchHHHHHHHHH
Confidence 4688999999998754 8999999999999876631 135688999999
Q ss_pred HHhcccccCCEEEEEEeeccCCCCCCCCCCCCCeeEEeEEEEecCCceeEEEEEE
Q 028754 83 LAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASSEQILSSRYSRVLLTM 137 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~LP~~~~e~~e~~lp~h~gl~Lv~~~~Q~l~~k~sR~Litm 137 (204)
.+.++|++||++++|+|...+- ..+.+..|| +++.+.|.+|++++|+++|+
T Consensus 279 ~~~r~Lk~gG~lv~~~~~~~~~---~~~~~~~g~-i~~~~~~~~h~sl~r~i~v~ 329 (329)
T TIGR01177 279 EFHEVLKSEGWIVYAVPTRIDL---ESLAEDAFR-VVKRFEVRVHRSLTRHIYVA 329 (329)
T ss_pred HHHHHccCCcEEEEEEcCCCCH---HHHHhhcCc-chheeeeeeecceEEEEEeC
Confidence 9999999999999999976332 235567799 99999999999999999874
No 4
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.97 E-value=2.9e-10 Score=99.78 Aligned_cols=117 Identities=23% Similarity=0.236 Sum_probs=87.1
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~ 82 (204)
+.++.+|+.+..-... ...||.|||+|||=-....+ ..++.+ ..+.|+..-.|.+|+.
T Consensus 97 i~v~~~Di~~~~~~~~-~~~fD~Ii~NPPyf~~~~~~---~~~~~~------------------~~Ar~e~~~~le~~i~ 154 (248)
T COG4123 97 IQVIEADIKEFLKALV-FASFDLIICNPPYFKQGSRL---NENPLR------------------AIARHEITLDLEDLIR 154 (248)
T ss_pred eeEehhhHHHhhhccc-ccccCEEEeCCCCCCCcccc---CcChhh------------------hhhhhhhcCCHHHHHH
Confidence 4678888887653332 23699999999996533331 111111 1345667777999999
Q ss_pred HHhcccccCCEEEEEEeeccCCCCCCCCCCCCCeeEEeEE-EEecCCc-eeEEEEEEEEcCC
Q 028754 83 LAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASS-EQILSSR-YSRVLLTMVKIGP 142 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~LP~~~~e~~e~~lp~h~gl~Lv~~~-~Q~l~~k-~sR~Litm~K~~~ 142 (204)
.|+++|++||+|+|++|..+..++ +.+....+|++...| +++...+ ..|.|++..|...
T Consensus 155 ~a~~~lk~~G~l~~V~r~erl~ei-~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 155 AAAKLLKPGGRLAFVHRPERLAEI-IELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGGK 215 (248)
T ss_pred HHHHHccCCCEEEEEecHHHHHHH-HHHHHhcCCCceEEEEecCCCCCcceEEEEEEecCCC
Confidence 999999999999999999876554 455666799999998 9998888 8999999988765
No 5
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.90 E-value=8.8e-10 Score=91.42 Aligned_cols=63 Identities=32% Similarity=0.495 Sum_probs=50.3
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~ 82 (204)
+++...|++..+++.+ .+|+||||||||+|.+... ++.++|..+++
T Consensus 90 i~~~~~D~~~l~~~~~---~~d~IvtnPPyG~r~~~~~-------------------------------~~~~ly~~~~~ 135 (179)
T PF01170_consen 90 IDFIQWDARELPLPDG---SVDAIVTNPPYGRRLGSKK-------------------------------DLEKLYRQFLR 135 (179)
T ss_dssp EEEEE--GGGGGGTTS---BSCEEEEE--STTSHCHHH-------------------------------HHHHHHHHHHH
T ss_pred eEEEecchhhcccccC---CCCEEEECcchhhhccCHH-------------------------------HHHHHHHHHHH
Confidence 5678899999996554 8999999999999998752 46889999999
Q ss_pred HHhcccccCCEEEEEEeec
Q 028754 83 LAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~LP~~ 101 (204)
.+.++|++ +++++++..
T Consensus 136 ~~~~~l~~--~~v~l~~~~ 152 (179)
T PF01170_consen 136 ELKRVLKP--RAVFLTTSN 152 (179)
T ss_dssp HHHCHSTT--CEEEEEESC
T ss_pred HHHHHCCC--CEEEEEECC
Confidence 99999997 899998865
No 6
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.68 E-value=6.6e-09 Score=78.01 Aligned_cols=65 Identities=34% Similarity=0.641 Sum_probs=45.8
Q ss_pred CCceeEeeCCCCC--CCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHH
Q 028754 2 PIGLLRADNNLPP--WRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHD 79 (204)
Q Consensus 2 p~dvl~~D~t~~p--~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~D 79 (204)
+++++++|+.... +..+ .||.|||||||+.+...+. ...+++..
T Consensus 51 ~~~~~~~D~~~~~~~~~~~---~~D~Iv~npP~~~~~~~~~-------------------------------~~~~~~~~ 96 (117)
T PF13659_consen 51 RVEVIVGDARDLPEPLPDG---KFDLIVTNPPYGPRSGDKA-------------------------------ALRRLYSR 96 (117)
T ss_dssp TEEEEESHHHHHHHTCTTT----EEEEEE--STTSBTT-----------------------------------GGCHHHH
T ss_pred eEEEEECchhhchhhccCc---eeEEEEECCCCccccccch-------------------------------hhHHHHHH
Confidence 3577888887654 4443 8999999999987644431 01127889
Q ss_pred HHHHHhcccccCCEEEEEEee
Q 028754 80 LLDLAGRMLVMGGRLVYFYPV 100 (204)
Q Consensus 80 LL~~Aa~lL~~gGRLvf~LP~ 100 (204)
+++.|.++|++||++++++|.
T Consensus 97 ~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 97 FLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp HHHHHHHHEEEEEEEEEEEEG
T ss_pred HHHHHHHHcCCCeEEEEEeCC
Confidence 999999999999999999983
No 7
>PRK13699 putative methylase; Provisional
Probab=98.17 E-value=1.8e-06 Score=74.46 Aligned_cols=77 Identities=27% Similarity=0.274 Sum_probs=46.5
Q ss_pred cceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHHHHhcccccCCEEEEEEee
Q 028754 21 EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYPV 100 (204)
Q Consensus 21 ~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~~Aa~lL~~gGRLvf~LP~ 100 (204)
+++|+|||||||++- .+....+ .. ......+.+...+..+.++|++||.++++...
T Consensus 19 ~SVDLIiTDPPY~i~--~~~~~~~-~~---------------------~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~ 74 (227)
T PRK13699 19 NAVDFILTDPPYLVG--FRDRQGR-TI---------------------AGDKTDEWLQPACNEMYRVLKKDALMVSFYGW 74 (227)
T ss_pred cccceEEeCCCcccc--cccCCCc-cc---------------------ccccHHHHHHHHHHHHHHHcCCCCEEEEEecc
Confidence 489999999999972 1110000 00 00124567789999999999999999876543
Q ss_pred ccCCCCCCCCCCCCCeeEEeEE
Q 028754 101 LREDSTRNPFPEHPCFKLVASS 122 (204)
Q Consensus 101 ~~~e~~e~~lp~h~gl~Lv~~~ 122 (204)
...... ....+..||.+....
T Consensus 75 ~~~~~~-~~al~~~GF~l~~~I 95 (227)
T PRK13699 75 NRVDRF-MAAWKNAGFSVVGHL 95 (227)
T ss_pred ccHHHH-HHHHHHCCCEEeeEE
Confidence 311111 122345588776554
No 8
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=98.05 E-value=3e-06 Score=69.50 Aligned_cols=98 Identities=22% Similarity=0.147 Sum_probs=55.3
Q ss_pred eeEEEeCCCCcccccc---cccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHHHHhcccccCCEEEEEEe
Q 028754 23 FDAIICDPPYGVRAGG---RKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYP 99 (204)
Q Consensus 23 fDAIVtDPPYGiRe~~---r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~~Aa~lL~~gGRLvf~LP 99 (204)
+|+|||||||++-... ...+... ..-+..+.+..++..+.++|++||.++++..
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~-----------------------~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~ 57 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNK-----------------------NHEEYLEWMEEWLKECYRVLKPGGSIFIFID 57 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCC-----------------------HHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCEEEECCCCCCCCCcchhhhccCCC-----------------------CHHHHHHHHHHHHHHHHhhcCCCeeEEEEec
Confidence 6999999999996662 1111110 0124567788999999999999999999876
Q ss_pred eccCCC-CCCCCCCCCC-eeEEeEEEEecC------C--c---eeEEEEEEEEcCCC
Q 028754 100 VLREDS-TRNPFPEHPC-FKLVASSEQILS------S--R---YSRVLLTMVKIGPY 143 (204)
Q Consensus 100 ~~~~e~-~e~~lp~h~g-l~Lv~~~~Q~l~------~--k---~sR~Litm~K~~~~ 143 (204)
...-.. .-..+.+..| |.++...+-... . + .+=.++++.|....
T Consensus 58 ~~~~~~~~~~~~~~~~g~~~~~~~iiW~K~~~~~~~~~~~~~~~~E~il~~~K~~~~ 114 (231)
T PF01555_consen 58 DREIAGFLFELALEIFGGFFLRNEIIWNKPNGMPKSNKKRFSNSHEYILVFSKDKKK 114 (231)
T ss_dssp CCEECTHHHHHHHHHHTT-EEEEEEEEE-SSSTTSSTCCS-B--EEEEEEEESSTT-
T ss_pred chhhhHHHHHHHHHHhhhhheeccceeEecCccccccccccccchhhhhcccccccc
Confidence 543321 1112223335 888766533222 1 1 45568888887665
No 9
>PRK11524 putative methyltransferase; Provisional
Probab=97.91 E-value=1.4e-05 Score=70.62 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=44.9
Q ss_pred ceeEeeCCCC--CCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHH
Q 028754 4 GLLRADNNLP--PWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLL 81 (204)
Q Consensus 4 dvl~~D~t~~--p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL 81 (204)
.++.+|+... .+. .+.||+|||||||++.... ..... .+ + .. ...+.+.++|
T Consensus 10 ~i~~gD~~~~l~~l~---~~siDlIitDPPY~~~~~~---~~~~~------~~--------~----~~--~~~~~l~~~l 63 (284)
T PRK11524 10 TIIHGDALTELKKIP---SESVDLIFADPPYNIGKNF---DGLIE------AW--------K----ED--LFIDWLYEWI 63 (284)
T ss_pred EEEeccHHHHHHhcc---cCcccEEEECCCccccccc---ccccc------cc--------c----HH--HHHHHHHHHH
Confidence 3566777653 222 3489999999999972110 00000 00 0 01 2345678999
Q ss_pred HHHhcccccCCEEEEEEee
Q 028754 82 DLAGRMLVMGGRLVYFYPV 100 (204)
Q Consensus 82 ~~Aa~lL~~gGRLvf~LP~ 100 (204)
..+.++|++||.++++...
T Consensus 64 ~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 64 DECHRVLKKQGTMYIMNST 82 (284)
T ss_pred HHHHHHhCCCcEEEEEcCc
Confidence 9999999999999988554
No 10
>PRK14967 putative methyltransferase; Provisional
Probab=97.68 E-value=0.00011 Score=62.19 Aligned_cols=76 Identities=22% Similarity=0.209 Sum_probs=47.5
Q ss_pred ceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHHH
Q 028754 4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDL 83 (204)
Q Consensus 4 dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~~ 83 (204)
.++.+|+... +.. +.||+|||||||-....... ..+.+. .+--..++-.+++.+++..
T Consensus 87 ~~~~~d~~~~-~~~---~~fD~Vi~npPy~~~~~~~~-~~~~~~-----------------~~~~~~~~~~~~~~~~l~~ 144 (223)
T PRK14967 87 DVRRGDWARA-VEF---RPFDVVVSNPPYVPAPPDAP-PSRGPA-----------------RAWDAGPDGRAVLDRLCDA 144 (223)
T ss_pred EEEECchhhh-ccC---CCeeEEEECCCCCCCCcccc-cccChh-----------------HhhhCCCcHHHHHHHHHHH
Confidence 4566776542 222 38999999999964332210 000000 0001123455778999999
Q ss_pred HhcccccCCEEEEEEeec
Q 028754 84 AGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 84 Aa~lL~~gGRLvf~LP~~ 101 (204)
|.++|++||++++..+..
T Consensus 145 a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 145 APALLAPGGSLLLVQSEL 162 (223)
T ss_pred HHHhcCCCcEEEEEEecc
Confidence 999999999999887754
No 11
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.62 E-value=4.2e-05 Score=64.50 Aligned_cols=109 Identities=22% Similarity=0.218 Sum_probs=62.5
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCC---CCCcChHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPS---TAPYCLSECVHD 79 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~---~~~Y~l~~l~~D 79 (204)
+.++.+|+.. ++.. +.||.|||||||.-.......-. ... .|-|. ...+.-.+.+..
T Consensus 139 ~~~~~~d~~~-~~~~---~~fD~Vi~npPy~~~~~~~~~~~--~~~--------------~~e~~~~~~~~~~~~~~~~~ 198 (251)
T TIGR03534 139 VTFLQSDWFE-PLPG---GKFDLIVSNPPYIPEADIHLLDP--EVR--------------FHEPRLALFGGEDGLDFYRR 198 (251)
T ss_pred EEEEECchhc-cCcC---CceeEEEECCCCCchhhhhhcCh--hhh--------------hcCCHHHHcCCCcHHHHHHH
Confidence 4567777765 3422 38999999999985433321100 000 00000 012334566789
Q ss_pred HHHHHhcccccCCEEEEEEeeccCCCCCCCCCCCCCeeEEeEEEEecCCceeEEE
Q 028754 80 LLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASSEQILSSRYSRVL 134 (204)
Q Consensus 80 LL~~Aa~lL~~gGRLvf~LP~~~~e~~e~~lp~h~gl~Lv~~~~Q~l~~k~sR~L 134 (204)
++..+.++|++||+++|.......+.. ..+....||..+. ..+.+. +..|.+
T Consensus 199 ~i~~~~~~L~~gG~~~~~~~~~~~~~~-~~~l~~~gf~~v~-~~~d~~-~~~r~~ 250 (251)
T TIGR03534 199 IIAQAPRLLKPGGWLLLEIGYDQGEAV-RALFEAAGFADVE-TRKDLA-GKDRVV 250 (251)
T ss_pred HHHHHHHhcccCCEEEEEECccHHHHH-HHHHHhCCCCceE-EEeCCC-CCcCee
Confidence 999999999999999988654333222 2333456787654 344554 445544
No 12
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.60 E-value=3.3e-05 Score=71.90 Aligned_cols=98 Identities=23% Similarity=0.317 Sum_probs=57.5
Q ss_pred ceeEeeCCCCC-CCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHH
Q 028754 4 GLLRADNNLPP-WRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 4 dvl~~D~t~~p-~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~ 82 (204)
.++.+|+...+ |-. .+.||.|++||||.. .|. +.. ++.-.+ ..-+ ..--.+.++..++|.
T Consensus 296 ~~~~~D~~~~~~~~~--~~~fD~Vl~D~Pcs~-~G~--~~~-~p~~~~------------~~~~-~~l~~l~~~q~~iL~ 356 (427)
T PRK10901 296 TVIVGDARDPAQWWD--GQPFDRILLDAPCSA-TGV--IRR-HPDIKW------------LRRP-EDIAALAALQSEILD 356 (427)
T ss_pred EEEEcCcccchhhcc--cCCCCEEEECCCCCc-ccc--ccc-Cccccc------------cCCH-HHHHHHHHHHHHHHH
Confidence 46788887653 322 237999999999863 121 111 111000 0000 001135677889999
Q ss_pred HHhcccccCCEEEEEE----eeccCCCCCCCCCCCCCeeEEe
Q 028754 83 LAGRMLVMGGRLVYFY----PVLREDSTRNPFPEHPCFKLVA 120 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~L----P~~~~e~~e~~lp~h~gl~Lv~ 120 (204)
.|.++|++||+|+|.. |..+++..+.-+.+|++++++.
T Consensus 357 ~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 357 ALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAELLD 398 (427)
T ss_pred HHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEec
Confidence 9999999999999764 3333332223445688887765
No 13
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=97.57 E-value=8.3e-05 Score=56.84 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=39.6
Q ss_pred ceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHHHHhcccccCCEEEEEEeec
Q 028754 22 VFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 22 ~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~~Aa~lL~~gGRLvf~LP~~ 101 (204)
.||+||..|||+........... ...-.++|.-+++.|.++| +|.++|+.|..
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~-------------------------~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~ 54 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKK-------------------------KKKKSDLYILFIEKSLNLL--NGYLSFITPNS 54 (106)
T ss_pred CcCEEEECCCChhhccccchhhc-------------------------ccccCcHHHHHHHHHHHHh--CCeEEEEeChH
Confidence 58999999999987654321100 0015678899999999999 99999999954
No 14
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.55 E-value=0.00011 Score=72.72 Aligned_cols=64 Identities=22% Similarity=0.169 Sum_probs=47.5
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~ 82 (204)
+++..+|+...+.... .+.||.||||||||.|.+... ++.++|..|.+
T Consensus 285 i~~~~~D~~~~~~~~~-~~~~d~IvtNPPYg~r~~~~~-------------------------------~l~~lY~~lg~ 332 (702)
T PRK11783 285 ITFEVKDVADLKNPLP-KGPTGLVISNPPYGERLGEEP-------------------------------ALIALYSQLGR 332 (702)
T ss_pred eEEEeCChhhcccccc-cCCCCEEEECCCCcCccCchH-------------------------------HHHHHHHHHHH
Confidence 4567888887653322 236999999999999876531 47889999887
Q ss_pred HHhcccccCCEEEEEEe
Q 028754 83 LAGRMLVMGGRLVYFYP 99 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~LP 99 (204)
...+.+ +|++++++.+
T Consensus 333 ~lk~~~-~g~~~~llt~ 348 (702)
T PRK11783 333 RLKQQF-GGWNAALFSS 348 (702)
T ss_pred HHHHhC-CCCeEEEEeC
Confidence 766655 8999988866
No 15
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.52 E-value=0.00016 Score=64.10 Aligned_cols=77 Identities=22% Similarity=0.180 Sum_probs=48.4
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCC---cChHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAP---YCLSECVHD 79 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~---Y~l~~l~~D 79 (204)
+.++.+|+... +.. +.||.|||||||........+- .+ ..|-|..+- -+-.+++..
T Consensus 174 i~~~~~D~~~~-~~~---~~fD~Iv~NPPy~~~~~~~~l~---------------~~--~~~ep~~al~gg~dGl~~~~~ 232 (284)
T TIGR03533 174 VTLIQSDLFAA-LPG---RKYDLIVSNPPYVDAEDMADLP---------------AE--YHHEPELALASGEDGLDLVRR 232 (284)
T ss_pred EEEEECchhhc-cCC---CCccEEEECCCCCCccchhhCC---------------Hh--hhcCHHHHhcCCCcHHHHHHH
Confidence 34677777532 322 2799999999998654332100 00 012222111 123478899
Q ss_pred HHHHHhcccccCCEEEEEEee
Q 028754 80 LLDLAGRMLVMGGRLVYFYPV 100 (204)
Q Consensus 80 LL~~Aa~lL~~gGRLvf~LP~ 100 (204)
++..|.++|++||+++|-+..
T Consensus 233 il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 233 ILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred HHHHHHHhcCCCCEEEEEECc
Confidence 999999999999999988764
No 16
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.49 E-value=0.00021 Score=58.20 Aligned_cols=62 Identities=26% Similarity=0.379 Sum_probs=42.0
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~ 82 (204)
+.++.+|.....- .+.||.|||+||+-. |. .+-.+++.++++
T Consensus 83 v~~~~~d~~~~~~----~~~fD~Iv~NPP~~~-------~~---------------------------~~~~~~~~~~i~ 124 (170)
T PF05175_consen 83 VEVVQSDLFEALP----DGKFDLIVSNPPFHA-------GG---------------------------DDGLDLLRDFIE 124 (170)
T ss_dssp EEEEESSTTTTCC----TTCEEEEEE---SBT-------TS---------------------------HCHHHHHHHHHH
T ss_pred ccccccccccccc----ccceeEEEEccchhc-------cc---------------------------ccchhhHHHHHH
Confidence 3467777765432 248999999999211 10 124568899999
Q ss_pred HHhcccccCCEEEEEEeecc
Q 028754 83 LAGRMLVMGGRLVYFYPVLR 102 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~LP~~~ 102 (204)
.|.++|++||+|.++.....
T Consensus 125 ~a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 125 QARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp HHHHHEEEEEEEEEEEETTS
T ss_pred HHHHhccCCCEEEEEeecCC
Confidence 99999999999999877553
No 17
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.49 E-value=1.8e-05 Score=73.80 Aligned_cols=97 Identities=28% Similarity=0.304 Sum_probs=56.3
Q ss_pred CceeEeeCCCCC----CCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHH
Q 028754 3 IGLLRADNNLPP----WRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVH 78 (204)
Q Consensus 3 ~dvl~~D~t~~p----~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~ 78 (204)
+.++.+|++..+ +.. +.||.|++|||.- |...+. +++...+ ..-+ ..--.+..+..
T Consensus 305 v~~~~~D~~~~~~~~~~~~---~~fD~Vl~DaPCS---g~G~~~-r~p~~~~------------~~~~-~~~~~l~~~Q~ 364 (434)
T PRK14901 305 IKILAADSRNLLELKPQWR---GYFDRILLDAPCS---GLGTLH-RHPDARW------------RQTP-EKIQELAPLQA 364 (434)
T ss_pred EEEEeCChhhccccccccc---ccCCEEEEeCCCC---cccccc-cCcchhh------------hCCH-HHHHHHHHHHH
Confidence 456778888664 222 3799999999942 111111 1111000 0000 00013556678
Q ss_pred HHHHHHhcccccCCEEEEE----EeeccCCCCCCCCCCCCCeeEE
Q 028754 79 DLLDLAGRMLVMGGRLVYF----YPVLREDSTRNPFPEHPCFKLV 119 (204)
Q Consensus 79 DLL~~Aa~lL~~gGRLvf~----LP~~~~e~~e~~lp~h~gl~Lv 119 (204)
++|+.|.++|++||+|||. .|..+++.+..-+-.|++|++.
T Consensus 365 ~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~ 409 (434)
T PRK14901 365 ELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLE 409 (434)
T ss_pred HHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEec
Confidence 9999999999999999865 3434333332345568888865
No 18
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.49 E-value=2.2e-05 Score=73.55 Aligned_cols=98 Identities=19% Similarity=0.200 Sum_probs=60.2
Q ss_pred CceeEeeCCCCC-CCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHH
Q 028754 3 IGLLRADNNLPP-WRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLL 81 (204)
Q Consensus 3 ~dvl~~D~t~~p-~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL 81 (204)
+.++.+|.+..+ +. .+.||+|++|||+---...+ +++.-. -+.++.....+.++..++|
T Consensus 290 v~~~~~Da~~l~~~~---~~~fD~Vl~DaPCsg~G~~~----~~p~~~-------------~~~~~~~~~~l~~~Q~~iL 349 (431)
T PRK14903 290 IEIKIADAERLTEYV---QDTFDRILVDAPCTSLGTAR----NHPEVL-------------RRVNKEDFKKLSEIQLRIV 349 (431)
T ss_pred EEEEECchhhhhhhh---hccCCEEEECCCCCCCcccc----CChHHH-------------HhCCHHHHHHHHHHHHHHH
Confidence 356778887655 32 23799999999994211111 111100 0111122235677889999
Q ss_pred HHHhcccccCCEEEEEEeeccCCCCCC----CCCCCCCeeEEe
Q 028754 82 DLAGRMLVMGGRLVYFYPVLREDSTRN----PFPEHPCFKLVA 120 (204)
Q Consensus 82 ~~Aa~lL~~gGRLvf~LP~~~~e~~e~----~lp~h~gl~Lv~ 120 (204)
..|+++|++||+|+|-.=+...++.|. -+..|++|+++.
T Consensus 350 ~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~~ 392 (431)
T PRK14903 350 SQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEVID 392 (431)
T ss_pred HHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcEEec
Confidence 999999999999999755544333332 234588888754
No 19
>PHA03412 putative methyltransferase; Provisional
Probab=97.48 E-value=0.00022 Score=62.63 Aligned_cols=67 Identities=19% Similarity=0.352 Sum_probs=45.6
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~ 82 (204)
+.++.+|+...++. +.||.|||+|||+....... +..|.=..++..|+.
T Consensus 99 ~~~~~~D~~~~~~~----~~FDlIIsNPPY~~~~~~d~---------------------------~ar~~g~~~~~~li~ 147 (241)
T PHA03412 99 ATWINADALTTEFD----TLFDMAISNPPFGKIKTSDF---------------------------KGKYTGAEFEYKVIE 147 (241)
T ss_pred CEEEEcchhccccc----CCccEEEECCCCCCcccccc---------------------------CCcccccHHHHHHHH
Confidence 45778888765542 38999999999998542210 112334567889999
Q ss_pred HHhcccccCCEEEEEEeeccC
Q 028754 83 LAGRMLVMGGRLVYFYPVLRE 103 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~LP~~~~ 103 (204)
.|.++|+ .|.+ +||...-
T Consensus 148 ~A~~Ll~-~G~~--ILP~~~~ 165 (241)
T PHA03412 148 RASQIAR-QGTF--IIPQMSA 165 (241)
T ss_pred HHHHHcC-CCEE--EeCcccc
Confidence 9999555 5554 9997643
No 20
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.46 E-value=0.00028 Score=57.54 Aligned_cols=96 Identities=17% Similarity=0.194 Sum_probs=56.3
Q ss_pred ceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHHH
Q 028754 4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDL 83 (204)
Q Consensus 4 dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~~ 83 (204)
.++.+|+...+ .+.||.||++|||.--........ . .++.-.. ...-.+++.++|..
T Consensus 69 ~~~~~d~~~~~-----~~~fD~Vi~n~p~~~~~~~~~~~~--~---------------~~~~~~~-~~~~~~~~~~~l~~ 125 (179)
T TIGR00537 69 DVVMTDLFKGV-----RGKFDVILFNPPYLPLEDDLRRGD--W---------------LDVAIDG-GKDGRKVIDRFLDE 125 (179)
T ss_pred EEEEccccccc-----CCcccEEEECCCCCCCcchhcccc--h---------------hhhhhhc-CCchHHHHHHHHHh
Confidence 34566765432 237999999999974332221000 0 0000000 11234678999999
Q ss_pred HhcccccCCEEEEEEeeccCCCCCCCCCCCCCeeEEeEE
Q 028754 84 AGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASS 122 (204)
Q Consensus 84 Aa~lL~~gGRLvf~LP~~~~e~~e~~lp~h~gl~Lv~~~ 122 (204)
+.++|++||++++..+...+...-..+....||.+....
T Consensus 126 ~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 126 LPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred HHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEE
Confidence 999999999999998877532221233344577766443
No 21
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.43 E-value=0.00022 Score=66.39 Aligned_cols=62 Identities=23% Similarity=0.319 Sum_probs=47.4
Q ss_pred ceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHHH
Q 028754 4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDL 83 (204)
Q Consensus 4 dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~~ 83 (204)
....+|++..+=.. +.+|.|||+||||.|-+.+. .+..||..+...
T Consensus 284 ~f~~~d~~~l~~~~---~~~gvvI~NPPYGeRlg~~~-------------------------------~v~~LY~~fg~~ 329 (381)
T COG0116 284 EFKQADATDLKEPL---EEYGVVISNPPYGERLGSEA-------------------------------LVAKLYREFGRT 329 (381)
T ss_pred EEEEcchhhCCCCC---CcCCEEEeCCCcchhcCChh-------------------------------hHHHHHHHHHHH
Confidence 34566777543221 37899999999999865531 366799999999
Q ss_pred HhcccccCCEEEEEEe
Q 028754 84 AGRMLVMGGRLVYFYP 99 (204)
Q Consensus 84 Aa~lL~~gGRLvf~LP 99 (204)
+.+.+.-.++.+|.-+
T Consensus 330 lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 330 LKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHhcCCceEEEEcc
Confidence 9999999999999844
No 22
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.36 E-value=0.00042 Score=59.51 Aligned_cols=110 Identities=23% Similarity=0.220 Sum_probs=60.3
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCC---CcChHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTA---PYCLSECVHD 79 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~---~Y~l~~l~~D 79 (204)
+.++.+|+.... . .+.||.|||||||.-......+. .. -..|-|..+ -.+-.+.+..
T Consensus 160 i~~~~~d~~~~~-~---~~~fD~Iv~npPy~~~~~~~~~~--~~--------------v~~~ep~~al~~g~~g~~~~~~ 219 (275)
T PRK09328 160 VEFLQGDWFEPL-P---GGRFDLIVSNPPYIPEADIHLLQ--PE--------------VRDHEPHLALFGGEDGLDFYRR 219 (275)
T ss_pred EEEEEccccCcC-C---CCceeEEEECCCcCCcchhhhCC--ch--------------hhhcCCchhhcCCCCHHHHHHH
Confidence 456677774432 2 23899999999997543322110 00 001222222 1235678899
Q ss_pred HHHHHhcccccCCEEEEEEeeccCCCCCCCCCCCCCeeEEeEEEEecCCceeEEEE
Q 028754 80 LLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASSEQILSSRYSRVLL 135 (204)
Q Consensus 80 LL~~Aa~lL~~gGRLvf~LP~~~~e~~e~~lp~h~gl~Lv~~~~Q~l~~k~sR~Li 135 (204)
++..|.++|++||+++|-......+.. ..+-...||.-+.. .+.+++ -.|.++
T Consensus 220 ~~~~~~~~Lk~gG~l~~e~g~~~~~~~-~~~l~~~gf~~v~~-~~d~~~-~~r~~~ 272 (275)
T PRK09328 220 IIEQAPRYLKPGGWLLLEIGYDQGEAV-RALLAAAGFADVET-RKDLAG-RDRVVL 272 (275)
T ss_pred HHHHHHHhcccCCEEEEEECchHHHHH-HHHHHhCCCceeEE-ecCCCC-CceEEE
Confidence 999999999999999985432222222 12223456653333 345553 345443
No 23
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.28 E-value=0.00055 Score=60.36 Aligned_cols=77 Identities=26% Similarity=0.390 Sum_probs=40.7
Q ss_pred eeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCC-CCCCCCcChHHHHHHHHHH
Q 028754 5 LLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGH-IPSTAPYCLSECVHDLLDL 83 (204)
Q Consensus 5 vl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~-ip~~~~Y~l~~l~~DLL~~ 83 (204)
+...|.-..++-.. ...||.|||+||||..+-.. ..... ..+... ++++ .-.++ .++..
T Consensus 109 i~~~d~l~~~~~~~-~~~~D~ii~NPPf~~~~~~~----~~~~~----------~~~~~~~~~~~---~~~~~--~Fi~~ 168 (311)
T PF02384_consen 109 IIQGDSLENDKFIK-NQKFDVIIGNPPFGSKEWKD----EELEK----------DERFKKYFPPK---SNAEY--AFIEH 168 (311)
T ss_dssp EEES-TTTSHSCTS-T--EEEEEEE--CTCES-ST----GGGCT----------TCCCTTCSSST---TEHHH--HHHHH
T ss_pred cccccccccccccc-ccccccccCCCCcccccccc----ccccc----------cccccccCCCc---cchhh--hhHHH
Confidence 44555544443221 23899999999999973310 00000 011111 1221 22222 37889
Q ss_pred HhcccccCCEEEEEEeec
Q 028754 84 AGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 84 Aa~lL~~gGRLvf~LP~~ 101 (204)
+.++|++|||+++++|..
T Consensus 169 ~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 169 ALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp HHHTEEEEEEEEEEEEHH
T ss_pred HHhhcccccceeEEecch
Confidence 999999999999999964
No 24
>PRK14968 putative methyltransferase; Provisional
Probab=97.23 E-value=0.00096 Score=53.57 Aligned_cols=100 Identities=23% Similarity=0.324 Sum_probs=57.7
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~ 82 (204)
+.++.+|+.. ++... .||+||++|||.......... .. ....+. ..-.-.+.+.++++
T Consensus 75 ~~~~~~d~~~-~~~~~---~~d~vi~n~p~~~~~~~~~~~------~~---------~~~~~~---~~~~~~~~~~~~i~ 132 (188)
T PRK14968 75 VEVIRSDLFE-PFRGD---KFDVILFNPPYLPTEEEEEWD------DW---------LNYALS---GGKDGREVIDRFLD 132 (188)
T ss_pred eEEEeccccc-ccccc---CceEEEECCCcCCCCchhhhh------hh---------hhhhhc---cCcChHHHHHHHHH
Confidence 4566777655 33332 799999999997643221100 00 000000 00012356789999
Q ss_pred HHhcccccCCEEEEEEeeccCCCCCCCCCCCCCeeEEeEEEE
Q 028754 83 LAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASSEQ 124 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~LP~~~~e~~e~~lp~h~gl~Lv~~~~Q 124 (204)
.+.++|++||+++++++...+...-..+....||+++.....
T Consensus 133 ~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 133 EVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred HHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeec
Confidence 999999999999999986543221123334558877654433
No 25
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.21 E-value=0.00054 Score=61.52 Aligned_cols=77 Identities=22% Similarity=0.181 Sum_probs=47.7
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCc---ChHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPY---CLSECVHD 79 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y---~l~~l~~D 79 (204)
+.++.+|+.. ++.. +.||.|||||||--......+.. +. .|-|..+-+ +=.+++..
T Consensus 186 i~~~~~D~~~-~l~~---~~fDlIvsNPPyi~~~~~~~l~~---------------~~--~~eP~~AL~gg~dGl~~~~~ 244 (307)
T PRK11805 186 VTLIESDLFA-ALPG---RRYDLIVSNPPYVDAEDMADLPA---------------EY--RHEPELALAAGDDGLDLVRR 244 (307)
T ss_pred EEEEECchhh-hCCC---CCccEEEECCCCCCccchhhcCH---------------hh--ccCccceeeCCCchHHHHHH
Confidence 4567778643 2222 27999999999976543221100 00 122222211 12378999
Q ss_pred HHHHHhcccccCCEEEEEEee
Q 028754 80 LLDLAGRMLVMGGRLVYFYPV 100 (204)
Q Consensus 80 LL~~Aa~lL~~gGRLvf~LP~ 100 (204)
++..|.++|++||+++|-+-.
T Consensus 245 i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 245 ILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred HHHHHHHhcCCCCEEEEEECc
Confidence 999999999999999986543
No 26
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.19 E-value=0.00023 Score=62.21 Aligned_cols=79 Identities=24% Similarity=0.219 Sum_probs=47.1
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~ 82 (204)
+.++.+|....+... +.||+|++|||+- |...+. +++... ... -+..-..+..+..++|.
T Consensus 124 v~~~~~D~~~~~~~~---~~fD~Vl~D~Pcs---g~G~~~-~~p~~~------------~~~-~~~~~~~l~~~q~~iL~ 183 (264)
T TIGR00446 124 VAVTNFDGRVFGAAV---PKFDAILLDAPCS---GEGVIR-KDPSRK------------KNW-SEEDIQEISALQKELID 183 (264)
T ss_pred EEEecCCHHHhhhhc---cCCCEEEEcCCCC---CCcccc-cChhhh------------hcC-CHHHHHHHHHHHHHHHH
Confidence 356677776543322 2699999999975 221111 111110 000 00111246667889999
Q ss_pred HHhcccccCCEEEEEEeec
Q 028754 83 LAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~LP~~ 101 (204)
.|.++|++||+|||--=+.
T Consensus 184 ~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 184 SAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred HHHHhcCCCCEEEEEeCCC
Confidence 9999999999999875443
No 27
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.15 E-value=0.00068 Score=59.07 Aligned_cols=82 Identities=16% Similarity=0.055 Sum_probs=48.4
Q ss_pred ceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCC---cChHHHHHHH
Q 028754 4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAP---YCLSECVHDL 80 (204)
Q Consensus 4 dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~---Y~l~~l~~DL 80 (204)
.++.+|+... +.....+.||.||+||||=-......+ .+. ...|-|..+- -+-.+++.++
T Consensus 136 ~~~~~D~~~~-l~~~~~~~fDlVv~NPPy~~~~~~~~~---~~e-------------~~~~ep~~al~gg~dgl~~~~~i 198 (251)
T TIGR03704 136 TVHEGDLYDA-LPTALRGRVDILAANAPYVPTDAIALM---PPE-------------ARDHEPRVALDGGADGLDVLRRV 198 (251)
T ss_pred EEEEeechhh-cchhcCCCEeEEEECCCCCCchhhhcC---CHH-------------HHhCCCHHHhcCCCcHHHHHHHH
Confidence 4567777542 221112379999999999432222110 000 0011111111 1456789999
Q ss_pred HHHHhcccccCCEEEEEEeecc
Q 028754 81 LDLAGRMLVMGGRLVYFYPVLR 102 (204)
Q Consensus 81 L~~Aa~lL~~gGRLvf~LP~~~ 102 (204)
+..|.++|++||++++......
T Consensus 199 ~~~a~~~L~~gG~l~l~~~~~~ 220 (251)
T TIGR03704 199 AAGAPDWLAPGGHLLVETSERQ 220 (251)
T ss_pred HHHHHHhcCCCCEEEEEECcch
Confidence 9999999999999999876543
No 28
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.12 E-value=0.00057 Score=64.43 Aligned_cols=112 Identities=19% Similarity=0.127 Sum_probs=65.7
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCc---ChHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPY---CLSECVHD 79 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y---~l~~l~~D 79 (204)
+.++.+|+....+.. .+.||.|||||||--...... ..+. ..|-|..+-+ +-.+++..
T Consensus 302 V~fi~gDl~e~~l~~--~~~FDLIVSNPPYI~~~e~~l---~~~~--------------v~~EP~~AL~gG~dGL~~yr~ 362 (423)
T PRK14966 302 VEFAHGSWFDTDMPS--EGKWDIIVSNPPYIENGDKHL---LQGD--------------LRFEPQIALTDFSDGLSCIRT 362 (423)
T ss_pred EEEEEcchhcccccc--CCCccEEEECCCCCCcchhhh---cchh--------------hhcCHHHHhhCCCchHHHHHH
Confidence 456778876554422 237999999999975322110 0000 0111211111 23467899
Q ss_pred HHHHHhcccccCCEEEEEEeeccCCCCCCCCCCCCCeeEEeEEEEecCCceeEEEEE
Q 028754 80 LLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASSEQILSSRYSRVLLT 136 (204)
Q Consensus 80 LL~~Aa~lL~~gGRLvf~LP~~~~e~~e~~lp~h~gl~Lv~~~~Q~l~~k~sR~Lit 136 (204)
+++.|.++|++||+++|-......+... .+....||..+.. .+.++ ..-|.++.
T Consensus 363 Ii~~a~~~LkpgG~lilEiG~~Q~e~V~-~ll~~~Gf~~v~v-~kDl~-G~dR~v~~ 416 (423)
T PRK14966 363 LAQGAPDRLAEGGFLLLEHGFDQGAAVR-GVLAENGFSGVET-LPDLA-GLDRVTLG 416 (423)
T ss_pred HHHHHHHhcCCCcEEEEEECccHHHHHH-HHHHHCCCcEEEE-EEcCC-CCcEEEEE
Confidence 9999999999999998876654344332 2333357765543 67777 44676653
No 29
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.04 E-value=0.0002 Score=66.97 Aligned_cols=99 Identities=26% Similarity=0.285 Sum_probs=54.7
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~ 82 (204)
+.++.+|+...+-.. .+.||.|++|||+- |..... +++...+ .. .+..-..+.++..++|.
T Consensus 303 v~~~~~D~~~~~~~~--~~~fD~Vl~D~Pcs---g~G~~~-~~p~~~~------------~~-~~~~~~~l~~~q~~iL~ 363 (444)
T PRK14902 303 IETKALDARKVHEKF--AEKFDKILVDAPCS---GLGVIR-RKPDIKY------------NK-TKEDIESLQEIQLEILE 363 (444)
T ss_pred EEEEeCCcccccchh--cccCCEEEEcCCCC---CCeeec-cCcchhh------------cC-CHHHHHHHHHHHHHHHH
Confidence 356778887643111 13799999999963 111111 1111000 00 00011245567789999
Q ss_pred HHhcccccCCEEEEEEeeccCCCCC----CCCCCCCCeeEEe
Q 028754 83 LAGRMLVMGGRLVYFYPVLREDSTR----NPFPEHPCFKLVA 120 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~LP~~~~e~~e----~~lp~h~gl~Lv~ 120 (204)
.|.++|++||+|+|..-+...++.+ ..+-.|+.|+++.
T Consensus 364 ~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~ 405 (444)
T PRK14902 364 SVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVP 405 (444)
T ss_pred HHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEec
Confidence 9999999999999864433222221 2344466777654
No 30
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.98 E-value=0.00032 Score=65.70 Aligned_cols=97 Identities=26% Similarity=0.295 Sum_probs=55.8
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~ 82 (204)
+.++.+|+...+ . .+.||+|++|||+- |...+.. ++.-.+ +.-+..--.+.++...+|.
T Consensus 303 v~~~~~Da~~~~--~--~~~fD~Vl~D~Pcs---g~g~~~r-~p~~~~-------------~~~~~~~~~l~~~q~~iL~ 361 (445)
T PRK14904 303 IETIEGDARSFS--P--EEQPDAILLDAPCT---GTGVLGR-RAELRW-------------KLTPEKLAELVGLQAELLD 361 (445)
T ss_pred EEEEeCcccccc--c--CCCCCEEEEcCCCC---Ccchhhc-Ccchhh-------------cCCHHHHHHHHHHHHHHHH
Confidence 456778877643 1 23799999999972 1111111 111000 0000011135567788999
Q ss_pred HHhcccccCCEEEEEEeeccCCCCC----CCCCCCCCeeEEe
Q 028754 83 LAGRMLVMGGRLVYFYPVLREDSTR----NPFPEHPCFKLVA 120 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~LP~~~~e~~e----~~lp~h~gl~Lv~ 120 (204)
.|.++|++||+|+|-.-+...++.| .-+-.|++|.++.
T Consensus 362 ~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~ 403 (445)
T PRK14904 362 HAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAEP 403 (445)
T ss_pred HHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEec
Confidence 9999999999999986544322221 2344677877654
No 31
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.93 E-value=0.0017 Score=57.13 Aligned_cols=110 Identities=19% Similarity=0.151 Sum_probs=62.2
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCC---cChHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAP---YCLSECVHD 79 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~---Y~l~~l~~D 79 (204)
+.++.+|+.. ++.. ..||.||+||||--..-.... .+ -..|-|..+- -+=.+.+..
T Consensus 167 v~~~~~d~~~-~~~~---~~fDlIvsNPPyi~~~~~~~~---~~--------------~~~~eP~~AL~gg~dgl~~~~~ 225 (284)
T TIGR00536 167 VEFIQSNLFE-PLAG---QKIDIIVSNPPYIDEEDLADL---PN--------------VVRFEPLLALVGGDDGLNILRQ 225 (284)
T ss_pred EEEEECchhc-cCcC---CCccEEEECCCCCCcchhhcC---Cc--------------ccccCcHHHhcCCCcHHHHHHH
Confidence 4566777654 3322 169999999999533211100 00 0112222211 123458999
Q ss_pred HHHHHhcccccCCEEEEEEeeccCCCCCCCCCC-CCCeeEEeEEEEecCCceeEEEEE
Q 028754 80 LLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPE-HPCFKLVASSEQILSSRYSRVLLT 136 (204)
Q Consensus 80 LL~~Aa~lL~~gGRLvf~LP~~~~e~~e~~lp~-h~gl~Lv~~~~Q~l~~k~sR~Lit 136 (204)
++..|.++|++||.++|-+.....+.. ..+.. ..+|.-+. +.+.++ ...|.++.
T Consensus 226 ii~~a~~~L~~gG~l~~e~g~~q~~~~-~~~~~~~~~~~~~~-~~~D~~-g~~R~~~~ 280 (284)
T TIGR00536 226 IIELAPDYLKPNGFLVCEIGNWQQKSL-KELLRIKFTWYDVE-NGRDLN-GKERVVLG 280 (284)
T ss_pred HHHHHHHhccCCCEEEEEECccHHHHH-HHHHHhcCCCceeE-EecCCC-CCceEEEE
Confidence 999999999999999887654333332 22333 34665443 367776 44676654
No 32
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.81 E-value=0.00048 Score=64.12 Aligned_cols=95 Identities=26% Similarity=0.299 Sum_probs=55.4
Q ss_pred eEeeCCCCC-CCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHHHH
Q 028754 6 LRADNNLPP-WRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLA 84 (204)
Q Consensus 6 l~~D~t~~p-~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~~A 84 (204)
+.+|....+ |.. .+.||.|++|||+----..+ +.+.-.+ . .-+..-..+..+...+|..|
T Consensus 294 ~~~d~~~~~~~~~--~~~fD~VllDaPcSg~G~~~----~~p~~~~------------~-~~~~~~~~l~~lQ~~lL~~a 354 (426)
T TIGR00563 294 KDGDGRGPSQWAE--NEQFDRILLDAPCSATGVIR----RHPDIKW------------L-RKPRDIAELAELQSEILDAI 354 (426)
T ss_pred ecccccccccccc--ccccCEEEEcCCCCCCcccc----cCcchhh------------c-CCHHHHHHHHHHHHHHHHHH
Confidence 345655443 322 23799999999975422222 1111000 0 00111235777889999999
Q ss_pred hcccccCCEEEEEEeeccCCCCC----CCCCCCCCeeEE
Q 028754 85 GRMLVMGGRLVYFYPVLREDSTR----NPFPEHPCFKLV 119 (204)
Q Consensus 85 a~lL~~gGRLvf~LP~~~~e~~e----~~lp~h~gl~Lv 119 (204)
.++|++||+|||..-+...++.| .-+.+|++|.+.
T Consensus 355 ~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~ 393 (426)
T TIGR00563 355 WPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPDFPFE 393 (426)
T ss_pred HHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCCCeec
Confidence 99999999999975555333222 234568887653
No 33
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.74 E-value=0.0015 Score=62.16 Aligned_cols=31 Identities=6% Similarity=0.088 Sum_probs=25.0
Q ss_pred ChHHHHHHHH-HHHhcccccCCEEEEEEeecc
Q 028754 72 CLSECVHDLL-DLAGRMLVMGGRLVYFYPVLR 102 (204)
Q Consensus 72 ~l~~l~~DLL-~~Aa~lL~~gGRLvf~LP~~~ 102 (204)
+...+|..++ +.|.++|++||+++|++|...
T Consensus 169 g~~~~y~~~f~~~~~~lL~~~G~~~~I~P~s~ 200 (524)
T TIGR02987 169 GVGTEYSRVFEEISLEIANKNGYVSIISPASW 200 (524)
T ss_pred CcccHHHHHHHHHHHHhcCCCCEEEEEEChHH
Confidence 4455777654 789999999999999999754
No 34
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.00086 Score=61.48 Aligned_cols=101 Identities=23% Similarity=0.180 Sum_probs=62.1
Q ss_pred ceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHHH
Q 028754 4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDL 83 (204)
Q Consensus 4 dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~~ 83 (204)
-++.+|.+..+=.....+.||.|+.|+|=--.-..|+ ++...+.. -+..-..+..+...||+.
T Consensus 211 ~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr----~Pd~~~~~-------------~~~~i~~l~~lQ~~iL~~ 273 (355)
T COG0144 211 IVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRR----DPDVKWRR-------------TPEDIAELAKLQKEILAA 273 (355)
T ss_pred EEEecccccccccccccCcCcEEEECCCCCCCccccc----CccccccC-------------CHHHHHHHHHHHHHHHHH
Confidence 3677888765422111226999999999654333332 23211100 011234688899999999
Q ss_pred HhcccccCCEEEEE----EeeccCCCCCCCCCCCCCeeEEeE
Q 028754 84 AGRMLVMGGRLVYF----YPVLREDSTRNPFPEHPCFKLVAS 121 (204)
Q Consensus 84 Aa~lL~~gGRLvf~----LP~~~~e~~e~~lp~h~gl~Lv~~ 121 (204)
|.++|++||+|||- .|..+++..+.-+-+|++++++..
T Consensus 274 a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~~ 315 (355)
T COG0144 274 ALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPDFELEPV 315 (355)
T ss_pred HHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCCceeecc
Confidence 99999999999986 343333333234567888877754
No 35
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.50 E-value=0.0033 Score=60.19 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=55.8
Q ss_pred ceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCC---cChHHHHHHH
Q 028754 4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAP---YCLSECVHDL 80 (204)
Q Consensus 4 dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~---Y~l~~l~~DL 80 (204)
.++.+|+.. ++.. +.||.|||+|||--..-..... ..-.+|-|..+- .+-.+.+..+
T Consensus 192 ~~~~~D~~~-~~~~---~~fDlIvsNPPYi~~~~~~~l~----------------~~v~~~EP~~AL~gg~dGl~~~~~i 251 (506)
T PRK01544 192 QIIHSNWFE-NIEK---QKFDFIVSNPPYISHSEKSEMA----------------IETINYEPSIALFAEEDGLQAYFII 251 (506)
T ss_pred eeeecchhh-hCcC---CCccEEEECCCCCCchhhhhcC----------------chhhccCcHHHhcCCccHHHHHHHH
Confidence 445566532 2222 3799999999998643221000 000112232221 2344689999
Q ss_pred HHHHhcccccCCEEEEEEeeccCCCCCCCCCCCCCeeEEeEEEEecCCc
Q 028754 81 LDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASSEQILSSR 129 (204)
Q Consensus 81 L~~Aa~lL~~gGRLvf~LP~~~~e~~e~~lp~h~gl~Lv~~~~Q~l~~k 129 (204)
++.|.++|++||++++-+-....+.. ..+....||..+. +.+.++++
T Consensus 252 l~~a~~~L~~gG~l~lEig~~q~~~v-~~~~~~~g~~~~~-~~~D~~g~ 298 (506)
T PRK01544 252 AENAKQFLKPNGKIILEIGFKQEEAV-TQIFLDHGYNIES-VYKDLQGH 298 (506)
T ss_pred HHHHHHhccCCCEEEEEECCchHHHH-HHHHHhcCCCceE-EEecCCCC
Confidence 99999999999999775332212211 1222334665443 24555533
No 36
>PHA03411 putative methyltransferase; Provisional
Probab=96.49 E-value=0.0039 Score=55.95 Aligned_cols=94 Identities=15% Similarity=0.245 Sum_probs=55.0
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHH-HHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSEC-VHDLL 81 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l-~~DLL 81 (204)
+.++.+|+..... .+.||+||+||||+.+..... ++... + ....++..-| +.++|
T Consensus 111 v~~v~~D~~e~~~----~~kFDlIIsNPPF~~l~~~d~---~~~~~-----~------------~GG~~g~~~l~~~~~l 166 (279)
T PHA03411 111 AEWITSDVFEFES----NEKFDVVISNPPFGKINTTDT---KDVFE-----Y------------TGGEFEFKVMTLGQKF 166 (279)
T ss_pred CEEEECchhhhcc----cCCCcEEEEcCCccccCchhh---hhhhh-----h------------ccCccccccccHHHHH
Confidence 4567888876542 237999999999998543321 00000 0 0011223334 67889
Q ss_pred HHHhcccccCCEEEEEEeeccCCCCCC--------CCCCCCCeeEEeEE
Q 028754 82 DLAGRMLVMGGRLVYFYPVLREDSTRN--------PFPEHPCFKLVASS 122 (204)
Q Consensus 82 ~~Aa~lL~~gGRLvf~LP~~~~e~~e~--------~lp~h~gl~Lv~~~ 122 (204)
.-...+|+++|++-|.+=. ...... .+....||.+-..|
T Consensus 167 ~~v~~~L~p~G~~~~~yss--~~~y~~sl~~~~y~~~l~~~g~~~~~~~ 213 (279)
T PHA03411 167 ADVGYFIVPTGSAGFAYSG--RPYYDGTMKSNKYLKWSKQTGLVTYAGC 213 (279)
T ss_pred hhhHheecCCceEEEEEec--cccccccCCHHHHHHHHHhcCcEecCCC
Confidence 9999999999988776321 111111 23334577777777
No 37
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.45 E-value=0.0058 Score=56.79 Aligned_cols=43 Identities=23% Similarity=0.515 Sum_probs=33.4
Q ss_pred ceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHHHHhcccccCCEEEEEE
Q 028754 22 VFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFY 98 (204)
Q Consensus 22 ~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~~Aa~lL~~gGRLvf~L 98 (204)
.||+|||+|||-.-... -.++...++..|.++|++||+|.++.
T Consensus 298 ~fDlIlsNPPfh~~~~~----------------------------------~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHAL----------------------------------TDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccC----------------------------------CHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 79999999999751110 12345788999999999999999883
No 38
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.0074 Score=54.70 Aligned_cols=43 Identities=33% Similarity=0.573 Sum_probs=34.6
Q ss_pred cceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHHHHhcccccCCEEEEE
Q 028754 21 EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 21 ~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~~Aa~lL~~gGRLvf~ 97 (204)
+.||+|||+||+ ++|... ..++-+.++..|+++|++||+|-++
T Consensus 223 ~kfd~IisNPPf--h~G~~v--------------------------------~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 223 GKFDLIISNPPF--HAGKAV--------------------------------VHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred ccccEEEeCCCc--cCCcch--------------------------------hHHHHHHHHHHHHHhhccCCEEEEE
Confidence 379999999996 455431 3456689999999999999999777
No 39
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=96.38 E-value=0.0046 Score=54.21 Aligned_cols=53 Identities=26% Similarity=0.463 Sum_probs=44.0
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~ 82 (204)
+..+.+|+.+.||.++ +||++.+. ||+|.-.. .+..|.
T Consensus 103 i~fv~~dAe~LPf~D~---sFD~vt~~--fglrnv~d-------------------------------------~~~aL~ 140 (238)
T COG2226 103 VEFVVGDAENLPFPDN---SFDAVTIS--FGLRNVTD-------------------------------------IDKALK 140 (238)
T ss_pred eEEEEechhhCCCCCC---ccCEEEee--ehhhcCCC-------------------------------------HHHHHH
Confidence 4679999999999988 99999985 66655442 467799
Q ss_pred HHhcccccCCEEEEE
Q 028754 83 LAGRMLVMGGRLVYF 97 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~ 97 (204)
.+.|+|+||||+++.
T Consensus 141 E~~RVlKpgG~~~vl 155 (238)
T COG2226 141 EMYRVLKPGGRLLVL 155 (238)
T ss_pred HHHHhhcCCeEEEEE
Confidence 999999999999876
No 40
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.33 E-value=0.0025 Score=59.40 Aligned_cols=64 Identities=31% Similarity=0.363 Sum_probs=41.9
Q ss_pred CceeEeeCCCCC--CCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHH
Q 028754 3 IGLLRADNNLPP--WRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDL 80 (204)
Q Consensus 3 ~dvl~~D~t~~p--~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DL 80 (204)
++++.+|+.... +... .+.||.||+||||-...... . .....-|.+|
T Consensus 273 v~~i~~D~~~~l~~~~~~-~~~fDlVilDPP~f~~~k~~-------l-----------------------~~~~~~y~~l 321 (396)
T PRK15128 273 AEFVRDDVFKLLRTYRDR-GEKFDVIVMDPPKFVENKSQ-------L-----------------------MGACRGYKDI 321 (396)
T ss_pred EEEEEccHHHHHHHHHhc-CCCCCEEEECCCCCCCChHH-------H-----------------------HHHHHHHHHH
Confidence 356777765421 2111 23799999999996542110 0 0122348899
Q ss_pred HHHHhcccccCCEEEEE
Q 028754 81 LDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 81 L~~Aa~lL~~gGRLvf~ 97 (204)
+..|.++|++||.|++.
T Consensus 322 ~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 322 NMLAIQLLNPGGILLTF 338 (396)
T ss_pred HHHHHHHcCCCeEEEEE
Confidence 99999999999999876
No 41
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.18 E-value=0.0061 Score=53.75 Aligned_cols=32 Identities=34% Similarity=0.555 Sum_probs=15.7
Q ss_pred CCceeEeeCCCCCCCCCCccceeEEEeCCCCcc
Q 028754 2 PIGLLRADNNLPPWRPGLKEVFDAIICDPPYGV 34 (204)
Q Consensus 2 p~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGi 34 (204)
|+..+..|+.++- -..+.+.||+++|||||++
T Consensus 93 ~i~~~~~DlR~~L-P~~~~~~fD~f~TDPPyT~ 124 (243)
T PF01861_consen 93 PIEAVHYDLRDPL-PEELRGKFDVFFTDPPYTP 124 (243)
T ss_dssp -EEEE---TTS----TTTSS-BSEEEE---SSH
T ss_pred ceEEEEecccccC-CHHHhcCCCEEEeCCCCCH
Confidence 4667788888652 1223458999999999999
No 42
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.12 E-value=0.014 Score=53.26 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcccccCCEEEEEEeec
Q 028754 75 ECVHDLLDLAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 75 ~l~~DLL~~Aa~lL~~gGRLvf~LP~~ 101 (204)
+...+++..|.++|++||+|.++....
T Consensus 280 ~~~~~~i~~a~~~LkpgG~L~iVan~~ 306 (342)
T PRK09489 280 DAAQTLIRGAVRHLNSGGELRIVANAF 306 (342)
T ss_pred HHHHHHHHHHHHhcCcCCEEEEEEeCC
Confidence 457899999999999999999986543
No 43
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=96.07 E-value=0.013 Score=49.08 Aligned_cols=62 Identities=24% Similarity=0.245 Sum_probs=48.4
Q ss_pred HHHHHHHHhcccccCCEEEEEEeeccCCCCCCCCCCCCCeeEEeEEEEecCCc-eeEEEEEEEE
Q 028754 77 VHDLLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASSEQILSSR-YSRVLLTMVK 139 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf~LP~~~~e~~e~~lp~h~gl~Lv~~~~Q~l~~k-~sR~Litm~K 139 (204)
+.++++.+.++|++||+++++.+....... ..++..-||.+....+-++.+- --|.|.++.|
T Consensus 124 ~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK00107 124 LSDLVELCLPLLKPGGRFLALKGRDPEEEI-AELPKALGGKVEEVIELTLPGLDGERHLVIIRK 186 (187)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCChHHHH-HHHHHhcCceEeeeEEEecCCCCCcEEEEEEec
Confidence 467889999999999999999876544433 3455666999999998888765 5788888776
No 44
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.74 E-value=0.0084 Score=59.52 Aligned_cols=65 Identities=26% Similarity=0.291 Sum_probs=41.4
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~ 82 (204)
+.++++|+.... +. ..+.||.||+||||=... ++ .. . ......-|.+|+.
T Consensus 591 v~~i~~D~~~~l-~~-~~~~fDlIilDPP~f~~~--~~-~~--~-----------------------~~~~~~~y~~l~~ 640 (702)
T PRK11783 591 HRLIQADCLAWL-KE-AREQFDLIFIDPPTFSNS--KR-ME--D-----------------------SFDVQRDHVALIK 640 (702)
T ss_pred eEEEEccHHHHH-HH-cCCCcCEEEECCCCCCCC--Cc-cc--h-----------------------hhhHHHHHHHHHH
Confidence 346677764311 10 123799999999996531 10 00 0 0123445889999
Q ss_pred HHhcccccCCEEEEE
Q 028754 83 LAGRMLVMGGRLVYF 97 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~ 97 (204)
.|.++|++||.|++.
T Consensus 641 ~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 641 DAKRLLRPGGTLYFS 655 (702)
T ss_pred HHHHHcCCCCEEEEE
Confidence 999999999998765
No 45
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=95.63 E-value=0.018 Score=58.09 Aligned_cols=93 Identities=15% Similarity=0.152 Sum_probs=57.1
Q ss_pred cChHHHHHHHHHHHhcccccCCEEEEEEeeccCCCCCCCC---CCCCCeeEEeEE------EEecCCc-----eeEEEEE
Q 028754 71 YCLSECVHDLLDLAGRMLVMGGRLVYFYPVLREDSTRNPF---PEHPCFKLVASS------EQILSSR-----YSRVLLT 136 (204)
Q Consensus 71 Y~l~~l~~DLL~~Aa~lL~~gGRLvf~LP~~~~e~~e~~l---p~h~gl~Lv~~~------~Q~l~~k-----~sR~Lit 136 (204)
-.+..++..+++....+|+++|+||..+++...+.-..-+ -...||.+.... .|.+... .+=..++
T Consensus 561 ~~fe~l~~~a~~~~rEll~ddg~lv~y~ahk~~eaW~tlveA~~Rragl~iTr~~pv~TEs~~s~~~rgk~aL~tsiV~v 640 (875)
T COG1743 561 EEFENLFREAFQAVRELLKDDGRLVTYYAHKAPEAWITLVEAGWRRAGLQITRAWPVRTESLASVRARGKAALETSIVVV 640 (875)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEEEeccCccchHHHHHHHhhhcCceeecccccccchHHHHHHHHHhhhhheeEEE
Confidence 3578899999999999999999999999988665432111 234566666543 3444332 2344555
Q ss_pred EEEcCC--------CcHHHHHHHHHhhhhhhHhhh
Q 028754 137 MVKIGP--------YTEEIAETARRKHLEFRENHL 163 (204)
Q Consensus 137 m~K~~~--------~~~~~~~~~~~~~~~fr~~~~ 163 (204)
..|.+. +-.+..+..++...+++.-.+
T Consensus 641 ~RpR~~~~~~~~~~~~~ei~e~~~ea~~e~~~~G~ 675 (875)
T COG1743 641 WRPRKEEKTVSIRGILREIEEKGREAADELRKLGL 675 (875)
T ss_pred EcCCCCccEEEeeccchhHHHHHHHhhHHHHHhCC
Confidence 555544 234444555555566665444
No 46
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=95.43 E-value=0.032 Score=49.61 Aligned_cols=27 Identities=26% Similarity=0.192 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHhcccccCCEEEEEEe
Q 028754 73 LSECVHDLLDLAGRMLVMGGRLVYFYP 99 (204)
Q Consensus 73 l~~l~~DLL~~Aa~lL~~gGRLvf~LP 99 (204)
=.+++..+++.|...|++||-+.+-.=
T Consensus 213 Gl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 213 GLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred HHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 356999999999999999998877643
No 47
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=95.08 E-value=0.0088 Score=54.51 Aligned_cols=76 Identities=18% Similarity=0.441 Sum_probs=42.3
Q ss_pred cceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCC--CCCcChHHHHHHHHHHHhcccccCCEEEEEE
Q 028754 21 EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPS--TAPYCLSECVHDLLDLAGRMLVMGGRLVYFY 98 (204)
Q Consensus 21 ~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~--~~~Y~l~~l~~DLL~~Aa~lL~~gGRLvf~L 98 (204)
+.||.|||+|||=....-...|+....+.. ..|-++ +..+ . ..+++++.+||.+.|++
T Consensus 188 ~~fDlivcNPPf~~s~~ea~~~~~rk~r~~-----------ar~~~~~~~l~f--~-------g~~~EL~~~GGe~~fi~ 247 (321)
T PRK11727 188 ERFDATLCNPPFHASAAEARAGSQRKLRNL-----------GLNKDKKKVLNF--G-------GQQAELWCEGGEVAFIK 247 (321)
T ss_pred CceEEEEeCCCCcCcchhhccchhhHHhhh-----------hccCCCccccCC--c-------chhhheeeCCcEeeeeh
Confidence 479999999999886554332322111100 000010 1111 0 14688999999999999
Q ss_pred eeccCCCCCCCCCCCCCeeEE
Q 028754 99 PVLREDSTRNPFPEHPCFKLV 119 (204)
Q Consensus 99 P~~~~e~~e~~lp~h~gl~Lv 119 (204)
|...+. ..+....||++.
T Consensus 248 ~mi~eS---~~~~~~~gwfts 265 (321)
T PRK11727 248 RMIEES---KAFAKQVLWFTS 265 (321)
T ss_pred HhhHHH---HHHHhhCcEEEE
Confidence 977543 234444455443
No 48
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=94.95 E-value=0.032 Score=48.30 Aligned_cols=54 Identities=31% Similarity=0.503 Sum_probs=36.8
Q ss_pred CCceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHH
Q 028754 2 PIGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLL 81 (204)
Q Consensus 2 p~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL 81 (204)
.++.+.+|+.+.|+.++ .||+|+|= ||+|.-.. ....|
T Consensus 99 ~i~~v~~da~~lp~~d~---sfD~v~~~--fglrn~~d-------------------------------------~~~~l 136 (233)
T PF01209_consen 99 NIEFVQGDAEDLPFPDN---SFDAVTCS--FGLRNFPD-------------------------------------RERAL 136 (233)
T ss_dssp SEEEEE-BTTB--S-TT----EEEEEEE--S-GGG-SS-------------------------------------HHHHH
T ss_pred CeeEEEcCHHHhcCCCC---ceeEEEHH--hhHHhhCC-------------------------------------HHHHH
Confidence 35789999999999876 89999973 55553321 24568
Q ss_pred HHHhcccccCCEEEEE
Q 028754 82 DLAGRMLVMGGRLVYF 97 (204)
Q Consensus 82 ~~Aa~lL~~gGRLvf~ 97 (204)
..+.++|+|||+++++
T Consensus 137 ~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 137 REMYRVLKPGGRLVIL 152 (233)
T ss_dssp HHHHHHEEEEEEEEEE
T ss_pred HHHHHHcCCCeEEEEe
Confidence 8999999999999876
No 49
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=94.93 E-value=0.054 Score=43.73 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=40.5
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~ 82 (204)
++++++|+...|+..+ .||+|++- ||.+.-. + ....|+
T Consensus 28 i~~~~~d~~~lp~~~~---~fD~v~~~--~~l~~~~------------------------------------d-~~~~l~ 65 (160)
T PLN02232 28 IEWIEGDAIDLPFDDC---EFDAVTMG--YGLRNVV------------------------------------D-RLRAMK 65 (160)
T ss_pred eEEEEechhhCCCCCC---CeeEEEec--chhhcCC------------------------------------C-HHHHHH
Confidence 5788999999998654 89999983 5443221 0 256788
Q ss_pred HHhcccccCCEEEEE
Q 028754 83 LAGRMLVMGGRLVYF 97 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~ 97 (204)
.+.++|++||+++++
T Consensus 66 ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 66 EMYRVLKPGSRVSIL 80 (160)
T ss_pred HHHHHcCcCeEEEEE
Confidence 999999999999887
No 50
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=94.53 E-value=0.071 Score=45.14 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcccccCCEEEEEEe
Q 028754 75 ECVHDLLDLAGRMLVMGGRLVYFYP 99 (204)
Q Consensus 75 ~l~~DLL~~Aa~lL~~gGRLvf~LP 99 (204)
.++.++|+.+.++|++||++++-..
T Consensus 142 ~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 142 YLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 3467899999999999999999643
No 51
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=94.08 E-value=0.15 Score=41.77 Aligned_cols=26 Identities=27% Similarity=0.193 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcccccCCEEEEEEee
Q 028754 75 ECVHDLLDLAGRMLVMGGRLVYFYPV 100 (204)
Q Consensus 75 ~l~~DLL~~Aa~lL~~gGRLvf~LP~ 100 (204)
+....+|+.+.++|++||++++..+.
T Consensus 123 ~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 123 DLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 35678999999999999999996543
No 52
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=93.80 E-value=0.067 Score=37.39 Aligned_cols=50 Identities=30% Similarity=0.377 Sum_probs=35.9
Q ss_pred eeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHHHH
Q 028754 5 LLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLA 84 (204)
Q Consensus 5 vl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~~A 84 (204)
+..+|++..|+..+ +||+|++- .... | + +-...++..+
T Consensus 46 ~~~~d~~~l~~~~~---sfD~v~~~------~~~~------------------------~--------~-~~~~~~l~e~ 83 (95)
T PF08241_consen 46 FRQGDAEDLPFPDN---SFDVVFSN------SVLH------------------------H--------L-EDPEAALREI 83 (95)
T ss_dssp EEESBTTSSSS-TT----EEEEEEE------SHGG------------------------G--------S-SHHHHHHHHH
T ss_pred heeehHHhCccccc---cccccccc------ccee------------------------e--------c-cCHHHHHHHH
Confidence 67889999998866 89999861 1221 0 1 2357889999
Q ss_pred hcccccCCEEEE
Q 028754 85 GRMLVMGGRLVY 96 (204)
Q Consensus 85 a~lL~~gGRLvf 96 (204)
.++|++||+++|
T Consensus 84 ~rvLk~gG~l~~ 95 (95)
T PF08241_consen 84 YRVLKPGGRLVI 95 (95)
T ss_dssp HHHEEEEEEEEE
T ss_pred HHHcCcCeEEeC
Confidence 999999999986
No 53
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=93.48 E-value=0.054 Score=51.80 Aligned_cols=78 Identities=23% Similarity=0.204 Sum_probs=46.4
Q ss_pred ceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHHH
Q 028754 4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDL 83 (204)
Q Consensus 4 dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~~ 83 (204)
.++..|.+...-.. .+.||.|+.|+|=-=--..| +++...+ ..-+...-.+..+-..+|+.
T Consensus 167 ~v~~~D~~~~~~~~--~~~fD~ILvDaPCSG~G~~r----k~p~~~~-------------~~s~~~v~~l~~lQ~~iL~~ 227 (470)
T PRK11933 167 ALTHFDGRVFGAAL--PETFDAILLDAPCSGEGTVR----KDPDALK-------------NWSPESNLEIAATQRELIES 227 (470)
T ss_pred EEEeCchhhhhhhc--hhhcCeEEEcCCCCCCcccc----cCHHHhh-------------hCCHHHHHHHHHHHHHHHHH
Confidence 34556766532111 23799999999953211111 1111000 00111123588888999999
Q ss_pred HhcccccCCEEEEEEee
Q 028754 84 AGRMLVMGGRLVYFYPV 100 (204)
Q Consensus 84 Aa~lL~~gGRLvf~LP~ 100 (204)
|+++|++||+|||--=+
T Consensus 228 A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 228 AFHALKPGGTLVYSTCT 244 (470)
T ss_pred HHHHcCCCcEEEEECCC
Confidence 99999999999987444
No 54
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=93.38 E-value=0.07 Score=45.26 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=17.9
Q ss_pred ceeEeeCCCCCCCCCCccceeEEEeCCCCc
Q 028754 4 GLLRADNNLPPWRPGLKEVFDAIICDPPYG 33 (204)
Q Consensus 4 dvl~~D~t~~p~R~~~~~~fDAIVtDPPYG 33 (204)
.++.+|+.... .. ..+.||.||+||||.
T Consensus 105 ~~~~~D~~~~l-~~-~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 105 RVVNTNALSFL-AQ-PGTPHNVVFVDPPFR 132 (199)
T ss_pred EEEEchHHHHH-hh-cCCCceEEEECCCCC
Confidence 46677765421 11 123699999999993
No 55
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=93.31 E-value=0.19 Score=43.85 Aligned_cols=54 Identities=26% Similarity=0.345 Sum_probs=38.8
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~ 82 (204)
+.++.+|+...|+..+ .||+|++- |+.+.- + + ...+|.
T Consensus 129 i~~~~~d~~~lp~~~~---sfD~V~~~--~~l~~~----------------------------~--------d-~~~~l~ 166 (261)
T PLN02233 129 IEWIEGDATDLPFDDC---YFDAITMG--YGLRNV----------------------------V--------D-RLKAMQ 166 (261)
T ss_pred eEEEEcccccCCCCCC---CEeEEEEe--cccccC----------------------------C--------C-HHHHHH
Confidence 4578889988888654 89999862 322111 0 1 256789
Q ss_pred HHhcccccCCEEEEEE
Q 028754 83 LAGRMLVMGGRLVYFY 98 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~L 98 (204)
.+.++|++||++++.-
T Consensus 167 ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 167 EMYRVLKPGSRVSILD 182 (261)
T ss_pred HHHHHcCcCcEEEEEE
Confidence 9999999999998873
No 56
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=93.29 E-value=0.13 Score=42.65 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=20.4
Q ss_pred eEeeCCCCC-CCCCCccceeEEEeCCCCcccccc
Q 028754 6 LRADNNLPP-WRPGLKEVFDAIICDPPYGVRAGG 38 (204)
Q Consensus 6 l~~D~t~~p-~R~~~~~~fDAIVtDPPYGiRe~~ 38 (204)
+.-|...+- +...+++.||.||+||||-..+..
T Consensus 69 ~fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~ 102 (162)
T PF10237_consen 69 VFYDYNEPEELPEELKGKFDVVVIDPPFLSEECL 102 (162)
T ss_pred EECCCCChhhhhhhcCCCceEEEECCCCCCHHHH
Confidence 344555432 222234689999999999555554
No 57
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=93.20 E-value=0.27 Score=47.06 Aligned_cols=123 Identities=16% Similarity=0.142 Sum_probs=63.4
Q ss_pred CceeEeeCCCCCCCC--CCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccC---CCCCCCCcChHHHH
Q 028754 3 IGLLRADNNLPPWRP--GLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVG---HIPSTAPYCLSECV 77 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~--~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~---~ip~~~~Y~l~~l~ 77 (204)
.++..+|.-..|+.. ...+.||.||+.|||+.-.-.. ....... ...... ..|....+
T Consensus 243 ~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~---~~~~~~~--------~~~~~~~~~~~~~~~~~------ 305 (489)
T COG0286 243 ANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGG---DLLESEQ--------DERFFFYGVFPTKNSAD------ 305 (489)
T ss_pred ccccccccccCCcccccCCccceeEEEeCCCCCcccccc---ccccccc--------cccccccCCCCCCCchH------
Confidence 355566666777763 2346899999999998322221 1000000 001111 11222222
Q ss_pred HHHHHHHhcccccCCEEEEEEeeccCCC--CCC----CCCCCCCeeEEeEE-EEecCC-ceeEEEEEEEEcCC
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYPVLREDS--TRN----PFPEHPCFKLVASS-EQILSS-RYSRVLLTMVKIGP 142 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP~~~~e~--~e~----~lp~h~gl~Lv~~~-~Q~l~~-k~sR~Litm~K~~~ 142 (204)
..+++.+...|.+|||+.++||.-.--- .+. .+-...-++.+-.. .+.+.. .....++.+.|.+.
T Consensus 306 ~af~~h~~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~~~~~~~ii~lp~~lF~~t~i~~~Il~l~k~k~ 378 (489)
T COG0286 306 LAFLQHILYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLEDNLLEAIIGLPTGLFYNTGIPTNILFLTKNKP 378 (489)
T ss_pred HHHHHHHHHhcCCCceEEEEecCCcCcCCCchHHHHHHHHhccceEEeeeCChhhcccCCCCeEEEEeecCCC
Confidence 5667788888999999999999653111 111 11122123333222 333332 36777888877655
No 58
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=92.81 E-value=0.21 Score=34.11 Aligned_cols=55 Identities=36% Similarity=0.506 Sum_probs=38.6
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~ 82 (204)
+.++..|+....+.. .+.+|.|++++|+..- .+....++.
T Consensus 49 ~~~~~~~~~~~~~~~--~~~~d~i~~~~~~~~~--------------------------------------~~~~~~~l~ 88 (107)
T cd02440 49 VEVLKGDAEELPPEA--DESFDVIISDPPLHHL--------------------------------------VEDLARFLE 88 (107)
T ss_pred eEEEEcChhhhcccc--CCceEEEEEccceeeh--------------------------------------hhHHHHHHH
Confidence 345566666655411 2378999999887653 233577888
Q ss_pred HHhcccccCCEEEEE
Q 028754 83 LAGRMLVMGGRLVYF 97 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~ 97 (204)
.+.++|++||.++++
T Consensus 89 ~~~~~l~~~g~~~~~ 103 (107)
T cd02440 89 EARRLLKPGGVLVLT 103 (107)
T ss_pred HHHHHcCCCCEEEEE
Confidence 888999999999876
No 59
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=92.56 E-value=0.14 Score=46.10 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHHHhcccccCCEEEEE
Q 028754 72 CLSECVHDLLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 72 ~l~~l~~DLL~~Aa~lL~~gGRLvf~ 97 (204)
.+..-|.+|+..|.++|.+||.|++-
T Consensus 212 ~~~~~y~~L~~~a~~ll~~gG~l~~~ 237 (286)
T PF10672_consen 212 DLERDYKKLLRRAMKLLKPGGLLLTC 237 (286)
T ss_dssp EHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 34556889999999999999998655
No 60
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=92.24 E-value=0.32 Score=40.63 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.7
Q ss_pred HHHHHHHhcccccCCEEEEEEe
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYP 99 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP 99 (204)
..+|+.+.++|++||++++.-+
T Consensus 131 ~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 131 MQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred HHHHHHHHHHcCcCeEEEEEEC
Confidence 4688899999999999987643
No 61
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=91.79 E-value=0.26 Score=46.33 Aligned_cols=47 Identities=43% Similarity=0.530 Sum_probs=36.1
Q ss_pred cceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHHHHhcccccCCEEEEE
Q 028754 21 EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 21 ~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~~Aa~lL~~gGRLvf~ 97 (204)
+.||.||.|||==.|.... .++...=|.+|+..|.++|++||.|++.
T Consensus 289 ~~fDlIilDPPsF~r~k~~------------------------------~~~~~rdy~~l~~~~~~iL~pgG~l~~~ 335 (393)
T COG1092 289 EKFDLIILDPPSFARSKKQ------------------------------EFSAQRDYKDLNDLALRLLAPGGTLVTS 335 (393)
T ss_pred CcccEEEECCcccccCccc------------------------------chhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4899999999933222111 1356667999999999999999999887
No 62
>PRK00811 spermidine synthase; Provisional
Probab=91.58 E-value=0.14 Score=45.28 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=18.7
Q ss_pred HHHHHHHhcccccCCEEEEEEe
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYP 99 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP 99 (204)
.++++.+.++|++||.++++..
T Consensus 171 ~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 171 KEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred HHHHHHHHHhcCCCcEEEEeCC
Confidence 5677889999999999998853
No 63
>PLN02672 methionine S-methyltransferase
Probab=91.39 E-value=0.5 Score=49.65 Aligned_cols=112 Identities=9% Similarity=-0.032 Sum_probs=55.5
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCC---CcChHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTA---PYCLSECVHD 79 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~---~Y~l~~l~~D 79 (204)
+.++.+|+.... +.. ...||.||++|||=-..-...+- .+... -++... .+.-..+.+-.. .-+=.++|..
T Consensus 186 V~f~~sDl~~~~-~~~-~~~fDlIVSNPPYI~~~e~~~l~--~eV~~-~ep~~~-~~~~~p~~AL~g~~~g~dGL~~yr~ 259 (1082)
T PLN02672 186 VEFYESDLLGYC-RDN-NIELDRIVGCIPQILNPNPEAMS--KLVTE-NASEEF-LYSLSNYCALQGFVEDQFGLGLIAR 259 (1082)
T ss_pred EEEEECchhhhc-ccc-CCceEEEEECCCcCCCcchhhcC--hhhhh-cccccc-ccccCccccccCCCCCCcHHHHHHH
Confidence 456777876433 321 12699999999994322111100 00000 000000 000012233222 1345679999
Q ss_pred HHHHHhcccccCCEEEEEEeeccCCCCCCCCCCCCCeeEEe
Q 028754 80 LLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVA 120 (204)
Q Consensus 80 LL~~Aa~lL~~gGRLvf~LP~~~~e~~e~~lp~h~gl~Lv~ 120 (204)
++..|.++|++||.+.|=+=...++.....+....||+.+.
T Consensus 260 i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 260 AVEEGISVIKPMGIMIFNMGGRPGQAVCERLFERRGFRITK 300 (1082)
T ss_pred HHHHHHHhccCCCEEEEEECccHHHHHHHHHHHHCCCCeeE
Confidence 99999999999998865432222222210133445666654
No 64
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=91.02 E-value=0.26 Score=40.83 Aligned_cols=25 Identities=24% Similarity=0.382 Sum_probs=20.4
Q ss_pred HHHHHHHHhcccccCCEEEEEEeec
Q 028754 77 VHDLLDLAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf~LP~~ 101 (204)
+.++++.+.++|++||+++++....
T Consensus 121 ~~~~~~~~~~~LkpgG~lvi~~~~~ 145 (181)
T TIGR00138 121 LNVLLELTLNLLKVGGYFLAYKGKK 145 (181)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 3467788899999999999996644
No 65
>PRK04266 fibrillarin; Provisional
Probab=90.43 E-value=0.63 Score=40.11 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=19.9
Q ss_pred HHHHHHHhcccccCCEEEEEEee
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYPV 100 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP~ 100 (204)
..+|+.+.++|++||++++.+|.
T Consensus 156 ~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 156 EIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred HHHHHHHHHhcCCCcEEEEEEec
Confidence 44688999999999999998775
No 66
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=90.42 E-value=0.18 Score=43.62 Aligned_cols=87 Identities=23% Similarity=0.244 Sum_probs=52.1
Q ss_pred ceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHH-HHHHHHHHhcccccCCEEEEEEee
Q 028754 22 VFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSEC-VHDLLDLAGRMLVMGGRLVYFYPV 100 (204)
Q Consensus 22 ~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l-~~DLL~~Aa~lL~~gGRLvf~LP~ 100 (204)
.+|.|+|||||..-......+.......... . +. ...+...- ...++..+.+.|+++|-+....+.
T Consensus 35 svDli~tdppy~~~~~~~~~~~~~~~~~~~~------~----~~---~~~~~~~~~~~~~~~~~~rvl~~~~~~~v~~~~ 101 (302)
T COG0863 35 SVDLIFTDPPYNNVKAGRKLGFLKRWLDAWD------G----WD---SRGIYLKFILLQWLAEQKRVLKPGGSLYVIDPF 101 (302)
T ss_pred ceeEEEcCCCccccccccccccccccchhhh------h----hh---hHHHHHHHHHHHHHHHhhheecCCCEEEEECCc
Confidence 8999999999998766443322111000000 0 00 01112233 678888999999999999998887
Q ss_pred ccCCCCCCCCCCCCCeeEEeEE
Q 028754 101 LREDSTRNPFPEHPCFKLVASS 122 (204)
Q Consensus 101 ~~~e~~e~~lp~h~gl~Lv~~~ 122 (204)
.....+. ...+..||..+...
T Consensus 102 ~~~~~~~-~~~~~~gf~~~~~i 122 (302)
T COG0863 102 SNLARIE-DIAKKLGFEILGKI 122 (302)
T ss_pred hhhhHHH-HHHHhCCCeEeeeE
Confidence 5444432 23334688877655
No 67
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=90.24 E-value=0.87 Score=38.00 Aligned_cols=14 Identities=57% Similarity=1.018 Sum_probs=9.9
Q ss_pred cceeEEEeCCCCcc
Q 028754 21 EVFDAIICDPPYGV 34 (204)
Q Consensus 21 ~~fDAIVtDPPYGi 34 (204)
+.||.|..||||..
T Consensus 113 ~~fDiIflDPPY~~ 126 (183)
T PF03602_consen 113 EKFDIIFLDPPYAK 126 (183)
T ss_dssp S-EEEEEE--STTS
T ss_pred CCceEEEECCCccc
Confidence 48999999999987
No 68
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=89.85 E-value=0.18 Score=44.74 Aligned_cols=52 Identities=35% Similarity=0.484 Sum_probs=38.2
Q ss_pred cChHHHHHHHHHHHhccc----ccCCEEEEEEeeccCCCC----CCCCCCCCCeeEEeEE
Q 028754 71 YCLSECVHDLLDLAGRML----VMGGRLVYFYPVLREDST----RNPFPEHPCFKLVASS 122 (204)
Q Consensus 71 Y~l~~l~~DLL~~Aa~lL----~~gGRLvf~LP~~~~e~~----e~~lp~h~gl~Lv~~~ 122 (204)
-.+.++-..+|+.|+++| ++||+|||-.=+...++. +.-+-+|+.|+++...
T Consensus 188 ~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~~~~l~~~~ 247 (283)
T PF01189_consen 188 EKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHPDFELVPIP 247 (283)
T ss_dssp HHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHSTSEEEECCE
T ss_pred chHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCCCcEEEecc
Confidence 368889999999999999 999999998533333322 2245568888887644
No 69
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=89.27 E-value=0.59 Score=40.75 Aligned_cols=92 Identities=22% Similarity=0.156 Sum_probs=52.4
Q ss_pred ceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHHH
Q 028754 4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDL 83 (204)
Q Consensus 4 dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~~ 83 (204)
.|+.||+++.|+-.+ ++|.+|+ +.-=.|.+ +.+.|..
T Consensus 107 ~Vtacdia~vPL~~~---svDv~Vf--------cLSLMGTn--------------------------------~~~fi~E 143 (219)
T PF05148_consen 107 RVTACDIANVPLEDE---SVDVAVF--------CLSLMGTN--------------------------------WPDFIRE 143 (219)
T ss_dssp TEEES-TTS-S--TT----EEEEEE--------ES---SS---------------------------------HHHHHHH
T ss_pred CEEEecCccCcCCCC---ceeEEEE--------EhhhhCCC--------------------------------cHHHHHH
Confidence 578899999998765 8898887 22222322 6899999
Q ss_pred HhcccccCCEEEEEEeeccCCCCC--CCCCCCCCeeEEeEEEEecCCceeEEEEEEEEcCC
Q 028754 84 AGRMLVMGGRLVYFYPVLREDSTR--NPFPEHPCFKLVASSEQILSSRYSRVLLTMVKIGP 142 (204)
Q Consensus 84 Aa~lL~~gGRLvf~LP~~~~e~~e--~~lp~h~gl~Lv~~~~Q~l~~k~sR~Litm~K~~~ 142 (204)
|.|+|++||.|-+.=-..+=+..+ ......-||++...-.+. + .=.++.+.|...
T Consensus 144 A~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n---~-~F~~f~F~K~~~ 200 (219)
T PF05148_consen 144 ANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESN---K-HFVLFEFKKIRK 200 (219)
T ss_dssp HHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--S---T-TEEEEEEEE-SS
T ss_pred HHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCC---C-eEEEEEEEEcCc
Confidence 999999999997764333322111 123345699998753222 2 334666777653
No 70
>PRK01581 speE spermidine synthase; Validated
Probab=89.17 E-value=0.34 Score=45.27 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=18.3
Q ss_pred HHHHHHHhcccccCCEEEEE
Q 028754 78 HDLLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~ 97 (204)
.++++.+.+.|++||.++.+
T Consensus 248 ~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 248 SELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred HHHHHHHHHhcCCCcEEEEe
Confidence 67889999999999999988
No 71
>PLN02244 tocopherol O-methyltransferase
Probab=88.83 E-value=0.92 Score=41.09 Aligned_cols=56 Identities=23% Similarity=0.417 Sum_probs=39.4
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~ 82 (204)
+.++++|+...|+..+ .||+|+|- ++. .|++. ...+|.
T Consensus 170 v~~~~~D~~~~~~~~~---~FD~V~s~------~~~------------------------~h~~d---------~~~~l~ 207 (340)
T PLN02244 170 VSFQVADALNQPFEDG---QFDLVWSM------ESG------------------------EHMPD---------KRKFVQ 207 (340)
T ss_pred eEEEEcCcccCCCCCC---CccEEEEC------Cch------------------------hccCC---------HHHHHH
Confidence 4678889988888654 89999872 111 12221 246788
Q ss_pred HHhcccccCCEEEEEEee
Q 028754 83 LAGRMLVMGGRLVYFYPV 100 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~LP~ 100 (204)
.+.++|++||++++.-..
T Consensus 208 e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 208 ELARVAAPGGRIIIVTWC 225 (340)
T ss_pred HHHHHcCCCcEEEEEEec
Confidence 889999999999986543
No 72
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=88.80 E-value=0.24 Score=44.17 Aligned_cols=18 Identities=61% Similarity=0.789 Sum_probs=13.3
Q ss_pred ccceeEEEeCCCCccccc
Q 028754 20 KEVFDAIICDPPYGVRAG 37 (204)
Q Consensus 20 ~~~fDAIVtDPPYGiRe~ 37 (204)
.+.|||||-|||==-.||
T Consensus 203 D~sfDaIiHDPPRfS~Ag 220 (287)
T COG2521 203 DESFDAIIHDPPRFSLAG 220 (287)
T ss_pred ccccceEeeCCCccchhh
Confidence 367999999999544433
No 73
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=88.74 E-value=0.6 Score=41.14 Aligned_cols=71 Identities=23% Similarity=0.225 Sum_probs=35.4
Q ss_pred CCCceeEeeCCCCC-CCC-CCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHH
Q 028754 1 MPIGLLRADNNLPP-WRP-GLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVH 78 (204)
Q Consensus 1 ~p~dvl~~D~t~~p-~R~-~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~ 78 (204)
+|.++.++|++.+- ... ......|.||||-|||-...=..-|.. +=..
T Consensus 145 ~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~------------------------------~p~~ 194 (246)
T PF11599_consen 145 EPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSG------------------------------GPVA 194 (246)
T ss_dssp --EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---H------------------------------HHHH
T ss_pred CchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCC------------------------------CcHH
Confidence 36788999998742 110 011246999999999988766431221 2256
Q ss_pred HHHHHHhcccccCCEEEEEEeeccCC
Q 028754 79 DLLDLAGRMLVMGGRLVYFYPVLRED 104 (204)
Q Consensus 79 DLL~~Aa~lL~~gGRLvf~LP~~~~e 104 (204)
++|+..+..|. ++-+|.+ +..+.
T Consensus 195 ~ml~~l~~vLp-~~sVV~v--~~k~~ 217 (246)
T PF11599_consen 195 QMLNSLAPVLP-ERSVVAV--SDKGR 217 (246)
T ss_dssp HHHHHHHCCS--TT-EEEE--EESSS
T ss_pred HHHHHHHhhCC-CCcEEEE--ecCCc
Confidence 88888999994 4333333 54443
No 74
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=88.25 E-value=0.56 Score=41.01 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=18.7
Q ss_pred HHHHHHHhcccccCCEEEEEEe
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYP 99 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP 99 (204)
.++++.+.++|++||.++++..
T Consensus 166 ~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 166 KEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred HHHHHHHHHHhCCCcEEEEcCC
Confidence 5677888999999999999843
No 75
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=88.24 E-value=0.99 Score=38.39 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=39.2
Q ss_pred ceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHHH
Q 028754 4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDL 83 (204)
Q Consensus 4 dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~~ 83 (204)
.++.+|+...|+..+ .||+|++....-- +.+ ...+|..
T Consensus 88 ~~~~~d~~~~~~~~~---~fD~V~s~~~l~~--------------------------------------~~d-~~~~l~~ 125 (251)
T PRK10258 88 HYLAGDIESLPLATA---TFDLAWSNLAVQW--------------------------------------CGN-LSTALRE 125 (251)
T ss_pred CEEEcCcccCcCCCC---cEEEEEECchhhh--------------------------------------cCC-HHHHHHH
Confidence 467788888777544 7899988643210 000 3567888
Q ss_pred HhcccccCCEEEEEEeec
Q 028754 84 AGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 84 Aa~lL~~gGRLvf~LP~~ 101 (204)
+.++|++||+++|..+..
T Consensus 126 ~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 126 LYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred HHHHcCCCeEEEEEeCCC
Confidence 899999999999986643
No 76
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=88.09 E-value=0.52 Score=38.74 Aligned_cols=76 Identities=24% Similarity=0.350 Sum_probs=43.0
Q ss_pred eeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHHHHhcccccCCEEEEEEeecc
Q 028754 23 FDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYPVLR 102 (204)
Q Consensus 23 fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~~Aa~lL~~gGRLvf~LP~~~ 102 (204)
||.|+.|||+=.+...++.+. ..|++.. ++.+|. +| -..+++.++|-|.+|.-...
T Consensus 1 fdvI~~DPPW~~~~~~~~~~~------------------~~~Y~tm---~~~~i~-~L--pv~~l~~~~~~lflWvTn~~ 56 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKGGA------------------EAHYPTM---SLDEIK-SL--PVPQLAAPGALLFLWVTNSQ 56 (176)
T ss_pred CCEEEEeCCCCCcCccccccc------------------ccCCCcc---CHHHHH-hC--CHHHhCCCCcEEEEEeccch
Confidence 799999999999777664211 1111111 222221 22 24577788889999965432
Q ss_pred CCCCCCCCCCCCCeeEEeEE
Q 028754 103 EDSTRNPFPEHPCFKLVASS 122 (204)
Q Consensus 103 ~e~~e~~lp~h~gl~Lv~~~ 122 (204)
-......+-.+=||+.++.-
T Consensus 57 ~~~~~~~l~~~WGf~~~~~~ 76 (176)
T PF05063_consen 57 LPEAKLELFPAWGFEYVTEW 76 (176)
T ss_pred hhHHHHHHHHhCCCEEEEEE
Confidence 11111344456688887664
No 77
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=87.90 E-value=0.84 Score=33.32 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcccccCCEEEEE
Q 028754 75 ECVHDLLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 75 ~l~~DLL~~Aa~lL~~gGRLvf~ 97 (204)
+-...+|+.+.++|++||+|++-
T Consensus 88 ~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 88 DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHHHHHHHHHHhcCCCcEEEEE
Confidence 44677899999999999999875
No 78
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=86.58 E-value=1.5 Score=38.13 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=18.2
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEe
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIIC 28 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVt 28 (204)
+.++++|+...||..+ .||.|++
T Consensus 135 ~~~~~~d~~~lp~~~~---sfD~I~~ 157 (272)
T PRK11088 135 VTFCVASSHRLPFADQ---SLDAIIR 157 (272)
T ss_pred CeEEEeecccCCCcCC---ceeEEEE
Confidence 4567889888888754 8999985
No 79
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=85.93 E-value=0.22 Score=45.41 Aligned_cols=31 Identities=35% Similarity=0.492 Sum_probs=22.9
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcc
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGV 34 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGi 34 (204)
+++++.|+.++ +-..+.+.||.+||||||-|
T Consensus 203 ie~~~~Dlr~p-lpe~~~~kFDvfiTDPpeTi 233 (354)
T COG1568 203 IEAFVFDLRNP-LPEDLKRKFDVFITDPPETI 233 (354)
T ss_pred hhheeehhccc-ChHHHHhhCCeeecCchhhH
Confidence 45677887764 33444668999999999966
No 80
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=85.88 E-value=1.9 Score=35.07 Aligned_cols=20 Identities=40% Similarity=0.492 Sum_probs=17.9
Q ss_pred HHHHHHHhcccccCCEEEEE
Q 028754 78 HDLLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~ 97 (204)
..+|+.+.++|++||+++++
T Consensus 123 ~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 123 QKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred HHHHHHHHHHcCCCcEEEEE
Confidence 46889999999999999876
No 81
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=85.40 E-value=1.4 Score=38.41 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=20.8
Q ss_pred HHHHHHHHhcccccCCEEEEEEeec
Q 028754 77 VHDLLDLAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf~LP~~ 101 (204)
...+|..+.++|++||++++.-+..
T Consensus 135 ~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 135 KKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred HHHHHHHHHHHcCCCcEEEEEEecc
Confidence 3578899999999999999876544
No 82
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=85.39 E-value=1.2 Score=40.41 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=17.1
Q ss_pred HHHHHHHHhcccccCCEEEE
Q 028754 77 VHDLLDLAGRMLVMGGRLVY 96 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf 96 (204)
+.|++..|.++|++||.|-+
T Consensus 243 ~~df~kEa~RiLk~gG~l~I 262 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYI 262 (325)
T ss_pred HHHHHHHHHHHhccCceEEE
Confidence 67888899999999998843
No 83
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=85.31 E-value=0.81 Score=38.25 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.5
Q ss_pred HHHHHHHHhcccccCCEEEEEEeec
Q 028754 77 VHDLLDLAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf~LP~~ 101 (204)
..++|+.+.++|++||++++..+..
T Consensus 135 ~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 135 QPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred CHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 5788999999999999999986544
No 84
>PRK03612 spermidine synthase; Provisional
Probab=85.10 E-value=0.66 Score=44.68 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=18.0
Q ss_pred HHHHHHHhcccccCCEEEEEE
Q 028754 78 HDLLDLAGRMLVMGGRLVYFY 98 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~L 98 (204)
.++++.+.++|++||.+++..
T Consensus 395 ~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 395 VEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred HHHHHHHHHhcCCCeEEEEec
Confidence 567788899999999998864
No 85
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=84.98 E-value=0.57 Score=41.29 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=26.7
Q ss_pred HHHHHhccc-ccCCEEEEEEeeccCCCCC-CCCCCCCCeeEEeE
Q 028754 80 LLDLAGRML-VMGGRLVYFYPVLREDSTR-NPFPEHPCFKLVAS 121 (204)
Q Consensus 80 LL~~Aa~lL-~~gGRLvf~LP~~~~e~~e-~~lp~h~gl~Lv~~ 121 (204)
.|..|.+.| ++||++|+++|+.+.-..- ..|- ..||..|..
T Consensus 127 ~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~-~~gf~~i~~ 169 (247)
T PF08704_consen 127 AIPHAKRALKKPGGRICCFSPCIEQVQKTVEALR-EHGFTDIET 169 (247)
T ss_dssp GHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHH-HTTEEEEEE
T ss_pred HHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHH-HCCCeeeEE
Confidence 367788889 9999999999998432110 1222 237776643
No 86
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=84.87 E-value=0.8 Score=38.38 Aligned_cols=32 Identities=31% Similarity=0.626 Sum_probs=26.5
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCccccc
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAG 37 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~ 37 (204)
+|+++||...+-+..+ .||..|-|||+|-+-.
T Consensus 98 idlLqcdildle~~~g---~fDtaviNppFGTk~~ 129 (185)
T KOG3420|consen 98 IDLLQCDILDLELKGG---IFDTAVINPPFGTKKK 129 (185)
T ss_pred hheeeeeccchhccCC---eEeeEEecCCCCcccc
Confidence 4889999998877553 9999999999997643
No 87
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=84.80 E-value=0.64 Score=37.43 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=23.7
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcc
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGV 34 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGi 34 (204)
+.++.+|+...++... .+|.||+||||.+
T Consensus 61 v~ii~~D~~~~~~~~~---~~d~vi~n~Py~~ 89 (169)
T smart00650 61 LTVIHGDALKFDLPKL---QPYKVVGNLPYNI 89 (169)
T ss_pred EEEEECchhcCCcccc---CCCEEEECCCccc
Confidence 4678899988877543 6899999999987
No 88
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=84.38 E-value=1.9 Score=33.76 Aligned_cols=55 Identities=27% Similarity=0.337 Sum_probs=41.1
Q ss_pred CceeEeeCCCCC--CCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHH
Q 028754 3 IGLLRADNNLPP--WRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDL 80 (204)
Q Consensus 3 ~dvl~~D~t~~p--~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DL 80 (204)
+.++.+|+.+.+ +. +.||.|+++.++ .- +. -...+
T Consensus 56 i~~~~~d~~~l~~~~~----~~~D~I~~~~~l------~~--------------------------------~~-~~~~~ 92 (152)
T PF13847_consen 56 IEFIQGDIEDLPQELE----EKFDIIISNGVL------HH--------------------------------FP-DPEKV 92 (152)
T ss_dssp EEEEESBTTCGCGCSS----TTEEEEEEESTG------GG--------------------------------TS-HHHHH
T ss_pred cceEEeehhccccccC----CCeeEEEEcCch------hh--------------------------------cc-CHHHH
Confidence 357788998855 43 389999999777 10 00 13577
Q ss_pred HHHHhcccccCCEEEEEEee
Q 028754 81 LDLAGRMLVMGGRLVYFYPV 100 (204)
Q Consensus 81 L~~Aa~lL~~gGRLvf~LP~ 100 (204)
|+.+.++|++||++.+..+.
T Consensus 93 l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 93 LKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp HHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHcCCCcEEEEEECC
Confidence 88999999999999888776
No 89
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=84.33 E-value=2 Score=37.06 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=17.6
Q ss_pred HHHHHHHhcccccCCEEEEE
Q 028754 78 HDLLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~ 97 (204)
..++..+.++|++||+|++.
T Consensus 163 ~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 163 ERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred HHHHHHHHHHcCCCcEEEEE
Confidence 46788899999999999985
No 90
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=83.62 E-value=0.78 Score=39.43 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=21.3
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCccc
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVR 35 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiR 35 (204)
++.+++|++... +.+|.+|+|||+|.+
T Consensus 95 v~f~~~dv~~~~------~~~dtvimNPPFG~~ 121 (198)
T COG2263 95 VEFVVADVSDFR------GKFDTVIMNPPFGSQ 121 (198)
T ss_pred eEEEEcchhhcC------CccceEEECCCCccc
Confidence 456788887543 267999999999998
No 91
>PRK08317 hypothetical protein; Provisional
Probab=83.58 E-value=2.6 Score=34.45 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=19.3
Q ss_pred HHHHHHHhcccccCCEEEEEEee
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYPV 100 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP~ 100 (204)
..++..+.++|++||++++.-|.
T Consensus 104 ~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 104 ARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred HHHHHHHHHHhcCCcEEEEEecC
Confidence 56788889999999999988653
No 92
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=83.32 E-value=2.9 Score=34.40 Aligned_cols=21 Identities=38% Similarity=0.414 Sum_probs=17.7
Q ss_pred HHHHHHHhcccccCCEEEEEE
Q 028754 78 HDLLDLAGRMLVMGGRLVYFY 98 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~L 98 (204)
..+|..+.++|++||+++++-
T Consensus 138 ~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 138 DKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred HHHHHHHHHhccCCcEEEEEE
Confidence 467888899999999998863
No 93
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=83.27 E-value=2.7 Score=36.19 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcccccCCEEEEEEeeccCC
Q 028754 74 SECVHDLLDLAGRMLVMGGRLVYFYPVLRED 104 (204)
Q Consensus 74 ~~l~~DLL~~Aa~lL~~gGRLvf~LP~~~~e 104 (204)
-++...|+..|+++|++||.|+.-=|...+.
T Consensus 117 ~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G 147 (204)
T PF06080_consen 117 WSAVEGLFAGAARLLKPGGLLFLYGPFNRDG 147 (204)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCcccCC
Confidence 4556899999999999999999888876643
No 94
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=82.89 E-value=2.4 Score=34.74 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=20.3
Q ss_pred HHHHHHHhcccccCCEEEEEEeec
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP~~ 101 (204)
..+|..+.++|++||.+++..|..
T Consensus 115 ~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 115 SQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred HHHHHHHHHHcCCCcEEEEEeCCc
Confidence 568899999999999999886644
No 95
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=82.82 E-value=2.9 Score=39.11 Aligned_cols=57 Identities=19% Similarity=0.131 Sum_probs=39.4
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~ 82 (204)
+.++.+|+...++..+ .||+|+|- .+. -|++. ...+|.
T Consensus 316 v~~~~~d~~~~~~~~~---~fD~I~s~------~~l------------------------~h~~d---------~~~~l~ 353 (475)
T PLN02336 316 VEFEVADCTKKTYPDN---SFDVIYSR------DTI------------------------LHIQD---------KPALFR 353 (475)
T ss_pred eEEEEcCcccCCCCCC---CEEEEEEC------Ccc------------------------cccCC---------HHHHHH
Confidence 4567888888777543 79999982 111 11111 247789
Q ss_pred HHhcccccCCEEEEEEeec
Q 028754 83 LAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~LP~~ 101 (204)
.+.++|++||+|++--+..
T Consensus 354 ~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 354 SFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred HHHHHcCCCeEEEEEEecc
Confidence 9999999999999875543
No 96
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=82.57 E-value=2.1 Score=35.66 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=18.4
Q ss_pred ceeEeeCCCC-C-CCCCCccceeEEEeCCCCcc
Q 028754 4 GLLRADNNLP-P-WRPGLKEVFDAIICDPPYGV 34 (204)
Q Consensus 4 dvl~~D~t~~-p-~R~~~~~~fDAIVtDPPYGi 34 (204)
.++.+|+... . +... ...||.|+.||||+.
T Consensus 102 ~~~~~D~~~~l~~~~~~-~~~~dvv~~DPPy~~ 133 (189)
T TIGR00095 102 EVVRNSALRALKFLAKK-PTFDNVIYLDPPFFN 133 (189)
T ss_pred EEEehhHHHHHHHhhcc-CCCceEEEECcCCCC
Confidence 5677777332 1 2111 125899999999973
No 97
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=82.52 E-value=0.45 Score=39.39 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=30.4
Q ss_pred HHHHHHHHhcccccCCEEEEEEeecc-CCCCCCCCCCCCCeeEEe
Q 028754 77 VHDLLDLAGRMLVMGGRLVYFYPVLR-EDSTRNPFPEHPCFKLVA 120 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf~LP~~~-~e~~e~~lp~h~gl~Lv~ 120 (204)
...+|..++++|++||+|.|...... .+.....+..+++|..+.
T Consensus 111 ~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 111 QPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred CHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEecc
Confidence 36889999999999999999855442 111113556677777664
No 98
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=82.08 E-value=2.4 Score=39.00 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=19.2
Q ss_pred HHHHHHHhcccccCCEEEEEEee
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYPV 100 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP~ 100 (204)
..+|+.+.++|++||+++++-|.
T Consensus 195 ~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 195 QRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred HHHHHHHHHhcCCCcEEEEEEec
Confidence 35789999999999999887543
No 99
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=81.68 E-value=2.7 Score=40.14 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=36.8
Q ss_pred ceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCC-CCCCCCcChHHHHHHHHHHHhcccccCCEEEEEEee
Q 028754 22 VFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGH-IPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYPV 100 (204)
Q Consensus 22 ~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~-ip~~~~Y~l~~l~~DLL~~Aa~lL~~gGRLvf~LP~ 100 (204)
.||.|+++||||..-.. |...+... ..+ --.-| +|++..-+ ..++..+-..|..||+...++|.
T Consensus 293 ~~D~v~~NpPf~~~~~~---~~~~~~~~--~d~-----~~~~~~l~~~~~~~-----~afi~h~~~~L~~gG~~aiI~~~ 357 (501)
T TIGR00497 293 GFEVVVSNPPYSISWAG---DKKSNLVS--DVR-----FKDAGTLAPNSKAD-----LAFVLHALYVLGQEGTAAIVCFP 357 (501)
T ss_pred cCCEEeecCCccccccc---cccccccc--ccc-----hhcccCCCCCchhh-----HHHHHHHHHhcCCCCeEEEEecC
Confidence 48999999999963221 10000000 000 00123 25444333 23455666789999999999996
Q ss_pred cc
Q 028754 101 LR 102 (204)
Q Consensus 101 ~~ 102 (204)
-.
T Consensus 358 gv 359 (501)
T TIGR00497 358 GI 359 (501)
T ss_pred Cc
Confidence 54
No 100
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=80.72 E-value=0.36 Score=40.07 Aligned_cols=76 Identities=20% Similarity=0.325 Sum_probs=33.4
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHH
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~ 82 (204)
++.+.+|+....-+......+|+|..|||+|=..=.+. . .+.+ . + .-.|+++.+++.....
T Consensus 50 I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWGGp~Y~~~---~--------~fdL----~-~---~~~p~~~~~l~~~~~~ 110 (163)
T PF09445_consen 50 IDFICGDFFELLKRLKSNKIFDVVFLSPPWGGPSYSKK---D--------VFDL----E-K---SMQPFNLEDLLKAARK 110 (163)
T ss_dssp EEEEES-HHHHGGGB------SEEEE---BSSGGGGGS---S--------SB-T----T-T---SSSS--HHHHHHHHHH
T ss_pred EEEEeCCHHHHHhhccccccccEEEECCCCCCcccccc---C--------ccCH----H-H---ccCCCCHHHHHHHHHh
Confidence 35677777664333221113899999999995333221 0 0000 0 0 1235667666665333
Q ss_pred HHhcccccCCEEEEEEeeccCC
Q 028754 83 LAGRMLVMGGRLVYFYPVLRED 104 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~LP~~~~e 104 (204)
. -..+++.||-..+-
T Consensus 111 ~-------t~nv~l~LPRn~dl 125 (163)
T PF09445_consen 111 I-------TPNVVLFLPRNSDL 125 (163)
T ss_dssp H--------S-EEEEEETTB-H
T ss_pred h-------CCCEEEEeCCCCCH
Confidence 3 35688999987653
No 101
>PRK06922 hypothetical protein; Provisional
Probab=80.11 E-value=3 Score=41.87 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=41.0
Q ss_pred CceeEeeCCCCC--CCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCC-CCCcChHHHHHH
Q 028754 3 IGLLRADNNLPP--WRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPS-TAPYCLSECVHD 79 (204)
Q Consensus 3 ~dvl~~D~t~~p--~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~-~~~Y~l~~l~~D 79 (204)
..++.+|+...| +..+ .||+|++.+++--= .+|+|. ...+.. +-...
T Consensus 469 ie~I~gDa~dLp~~fede---SFDvVVsn~vLH~L--------------------------~syIp~~g~~f~~-edl~k 518 (677)
T PRK06922 469 WNVIKGDAINLSSSFEKE---SVDTIVYSSILHEL--------------------------FSYIEYEGKKFNH-EVIKK 518 (677)
T ss_pred eEEEEcchHhCccccCCC---CEEEEEEchHHHhh--------------------------hhhcccccccccH-HHHHH
Confidence 356778887765 4433 79999988765310 011111 001122 34567
Q ss_pred HHHHHhcccccCCEEEEE
Q 028754 80 LLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 80 LL~~Aa~lL~~gGRLvf~ 97 (204)
+|..+.+.|++||++++.
T Consensus 519 iLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 519 GLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHHHHHHHcCCCcEEEEE
Confidence 788999999999999886
No 102
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=80.07 E-value=2.9 Score=39.14 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=18.6
Q ss_pred HHHHHHHHhcccccCCEEEEE
Q 028754 77 VHDLLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf~ 97 (204)
...+|..+.++|++||+++|.
T Consensus 121 ~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 121 VENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred HHHHHHHHHHhcCCCeEEEEE
Confidence 568899999999999999885
No 103
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=79.73 E-value=3.5 Score=36.10 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcccccCCEEEEE
Q 028754 76 CVHDLLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 76 l~~DLL~~Aa~lL~~gGRLvf~ 97 (204)
....++....++|++||.|++-
T Consensus 220 ~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 220 TQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred HHHHHHHHHHHHhCCCeEEEEE
Confidence 3567899999999999999764
No 104
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=79.18 E-value=2.5 Score=36.04 Aligned_cols=31 Identities=35% Similarity=0.564 Sum_probs=19.7
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCc
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYG 33 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYG 33 (204)
..++++|+..-.-..+..+.||.|--||||+
T Consensus 95 ~~~~~~da~~~L~~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 95 ARVLRNDALRALKQLGTREPFDLVFLDPPYA 125 (187)
T ss_pred eEEEeecHHHHHHhcCCCCcccEEEeCCCCc
Confidence 3567778772211112223599999999999
No 105
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=79.06 E-value=8.6 Score=33.76 Aligned_cols=27 Identities=7% Similarity=0.013 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcccccCCEEEEEEeecc
Q 028754 76 CVHDLLDLAGRMLVMGGRLVYFYPVLR 102 (204)
Q Consensus 76 l~~DLL~~Aa~lL~~gGRLvf~LP~~~ 102 (204)
-...+|..+.++|++||++.++.+...
T Consensus 201 ~~~~~l~~~~~~LkpgG~~l~v~~~~~ 227 (287)
T PRK12335 201 RIPAIIKNMQEHTNPGGYNLIVCAMDT 227 (287)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 467889999999999999887766543
No 106
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=78.92 E-value=3.9 Score=33.87 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcccccCCEEEEE
Q 028754 76 CVHDLLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 76 l~~DLL~~Aa~lL~~gGRLvf~ 97 (204)
....++..+.++|++||++.++
T Consensus 111 ~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 111 RVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred HHHHHHHHHHHHhCCCcEEEEE
Confidence 4568899999999999996544
No 107
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=77.69 E-value=4.6 Score=36.54 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=16.7
Q ss_pred HHHHHHHHhcccccCCEEEE
Q 028754 77 VHDLLDLAGRMLVMGGRLVY 96 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf 96 (204)
.+.-|+.|.++|++|||+..
T Consensus 193 ~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 193 IQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred HHHHHHHHHHhcCCCcEEEE
Confidence 35678899999999999953
No 108
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=76.68 E-value=6.6 Score=35.48 Aligned_cols=22 Identities=36% Similarity=0.276 Sum_probs=18.4
Q ss_pred HHHHHHHhcccccCCEEEEEEe
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYP 99 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP 99 (204)
.++|..+.+.|++||++++-..
T Consensus 206 ~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 206 LDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred HHHHHHHHHhcCCCcEEEEEEE
Confidence 4678999999999999987543
No 109
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=76.20 E-value=1.8 Score=31.52 Aligned_cols=52 Identities=29% Similarity=0.438 Sum_probs=35.6
Q ss_pred CCceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHH
Q 028754 2 PIGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLL 81 (204)
Q Consensus 2 p~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL 81 (204)
+++.+.+|+...+... +.||+|+| .|.- -.|--.+-...||
T Consensus 50 ~~~~~~~D~~~l~~~~---~~~D~v~~------------~~~~------------------------~~~~~~~~~~~ll 90 (101)
T PF13649_consen 50 KVRFVQADARDLPFSD---GKFDLVVC------------SGLS------------------------LHHLSPEELEALL 90 (101)
T ss_dssp TSEEEESCTTCHHHHS---SSEEEEEE-------------TTG------------------------GGGSSHHHHHHHH
T ss_pred ceEEEECCHhHCcccC---CCeeEEEE------------cCCc------------------------cCCCCHHHHHHHH
Confidence 4578889998866543 38999999 1100 0122234578899
Q ss_pred HHHhcccccCC
Q 028754 82 DLAGRMLVMGG 92 (204)
Q Consensus 82 ~~Aa~lL~~gG 92 (204)
+.++++|++||
T Consensus 91 ~~~~~~l~pgG 101 (101)
T PF13649_consen 91 RRIARLLRPGG 101 (101)
T ss_dssp HHHHHTEEEEE
T ss_pred HHHHHHhCCCC
Confidence 99999999998
No 110
>TIGR01712 phage_N6A_met phage N-6-adenine-methyltransferase. This is a model for a phage-borne DNA N-6-adenine-methyltransferase.
Probab=75.43 E-value=5.1 Score=33.55 Aligned_cols=10 Identities=40% Similarity=0.860 Sum_probs=9.0
Q ss_pred EEEeCCCCcc
Q 028754 25 AIICDPPYGV 34 (204)
Q Consensus 25 AIVtDPPYGi 34 (204)
+|-|+||||.
T Consensus 64 ~vf~NPPYS~ 73 (166)
T TIGR01712 64 AVWLNPPYSR 73 (166)
T ss_pred eEEecCCCCc
Confidence 8999999983
No 111
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=75.07 E-value=2.4 Score=34.46 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=28.5
Q ss_pred HHHHHHHHhcccccCCEEEEEEeeccCCCCCCCCCCCCCeeEEeEE
Q 028754 77 VHDLLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASS 122 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf~LP~~~~e~~e~~lp~h~gl~Lv~~~ 122 (204)
+.++++.+.++|++||++++-.........-..+.+..||+.+...
T Consensus 110 ~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 110 LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEE
Confidence 4567889999999999998865433221111233445577665543
No 112
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=74.66 E-value=5.5 Score=36.49 Aligned_cols=27 Identities=26% Similarity=0.043 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHHHhcccccCCEEEEEE
Q 028754 72 CLSECVHDLLDLAGRMLVMGGRLVYFY 98 (204)
Q Consensus 72 ~l~~l~~DLL~~Aa~lL~~gGRLvf~L 98 (204)
+-.+.+..+...|.++|.+||.+.|=+
T Consensus 259 eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 259 EGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred chhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 455677888999999999999886653
No 113
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=72.11 E-value=5.6 Score=33.27 Aligned_cols=15 Identities=33% Similarity=0.144 Sum_probs=11.6
Q ss_pred HhcccccCCEEEEEE
Q 028754 84 AGRMLVMGGRLVYFY 98 (204)
Q Consensus 84 Aa~lL~~gGRLvf~L 98 (204)
..+.|++||+|++.+
T Consensus 163 ~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 163 LIDQLKEGGILVMPV 177 (215)
T ss_pred HHHhcCcCcEEEEEE
Confidence 456799999988753
No 114
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.04 E-value=1.8 Score=37.21 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=17.7
Q ss_pred CccceeEEEeCCCCcccccccc
Q 028754 19 LKEVFDAIICDPPYGVRAGGRK 40 (204)
Q Consensus 19 ~~~~fDAIVtDPPYGiRe~~r~ 40 (204)
+++.||.||.||||=--++..|
T Consensus 132 lk~~fdiivaDPPfL~~eCl~K 153 (217)
T KOG3350|consen 132 LKAHFDIIVADPPFLSEECLAK 153 (217)
T ss_pred HHhcccEEEeCCccccchhhhh
Confidence 4568999999999988776644
No 115
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=71.67 E-value=6.5 Score=32.79 Aligned_cols=14 Identities=43% Similarity=0.301 Sum_probs=11.0
Q ss_pred HhcccccCCEEEEE
Q 028754 84 AGRMLVMGGRLVYF 97 (204)
Q Consensus 84 Aa~lL~~gGRLvf~ 97 (204)
..+.|++||+|++-
T Consensus 159 l~~~L~~gG~lvi~ 172 (205)
T PRK13944 159 LVRQLKDGGVLVIP 172 (205)
T ss_pred HHHhcCcCcEEEEE
Confidence 44779999999664
No 116
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=70.55 E-value=6.4 Score=33.11 Aligned_cols=14 Identities=29% Similarity=0.135 Sum_probs=10.9
Q ss_pred hcccccCCEEEEEE
Q 028754 85 GRMLVMGGRLVYFY 98 (204)
Q Consensus 85 a~lL~~gGRLvf~L 98 (204)
.+.|++||+|++.+
T Consensus 163 ~~~LkpgG~lvi~~ 176 (212)
T PRK13942 163 IEQLKDGGIMVIPV 176 (212)
T ss_pred HHhhCCCcEEEEEE
Confidence 34799999987754
No 117
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=70.47 E-value=2.7 Score=33.75 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=14.3
Q ss_pred HHHHHHhcccccCCEEEEE
Q 028754 79 DLLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 79 DLL~~Aa~lL~~gGRLvf~ 97 (204)
..+.+|..+|+.|+.++=+
T Consensus 19 ~A~~fA~all~~gh~~v~i 37 (126)
T COG1553 19 SALRFAEALLEQGHELVRL 37 (126)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 3477999999988888533
No 118
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=69.84 E-value=3.5 Score=35.80 Aligned_cols=28 Identities=14% Similarity=0.411 Sum_probs=23.1
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCccc
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVR 35 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiR 35 (204)
+.++.+|+...+|. .||.||+.|||.+.
T Consensus 77 v~ii~~D~~~~~~~-----~~d~Vv~NlPy~i~ 104 (258)
T PRK14896 77 VEIIEGDALKVDLP-----EFNKVVSNLPYQIS 104 (258)
T ss_pred EEEEEeccccCCch-----hceEEEEcCCcccC
Confidence 56888999887763 46999999999984
No 119
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=69.21 E-value=2.9 Score=39.25 Aligned_cols=28 Identities=29% Similarity=0.628 Sum_probs=19.2
Q ss_pred CceeEeeCCCC----CCCCCCccceeEEEeCCCCc
Q 028754 3 IGLLRADNNLP----PWRPGLKEVFDAIICDPPYG 33 (204)
Q Consensus 3 ~dvl~~D~t~~----p~R~~~~~~fDAIVtDPPYG 33 (204)
+.++.+|+... +|.. +.||+||+||||.
T Consensus 347 v~~~~~d~~~~l~~~~~~~---~~fD~Vi~dPPr~ 378 (443)
T PRK13168 347 VTFYHANLEEDFTDQPWAL---GGFDKVLLDPPRA 378 (443)
T ss_pred eEEEEeChHHhhhhhhhhc---CCCCEEEECcCCc
Confidence 45677777542 2322 2699999999995
No 120
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=68.38 E-value=5 Score=36.52 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcccccCCEEEEEEeecc
Q 028754 76 CVHDLLDLAGRMLVMGGRLVYFYPVLR 102 (204)
Q Consensus 76 l~~DLL~~Aa~lL~~gGRLvf~LP~~~ 102 (204)
.+..+|..|..+|++|||||++.=+..
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfHSL 244 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFHSL 244 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcH
Confidence 356778999999999999999965543
No 121
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=68.24 E-value=6 Score=34.59 Aligned_cols=82 Identities=22% Similarity=0.247 Sum_probs=49.4
Q ss_pred ceeEeeCCCCCCCCCCccceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHHH
Q 028754 4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDL 83 (204)
Q Consensus 4 dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~~ 83 (204)
+|+..||..-|......+.||.|+|= .--+|+|.- .-=-+.|..
T Consensus 86 ~I~qqDFm~rplp~~~~e~FdvIs~S------------------------------LVLNfVP~p------~~RG~Ml~r 129 (219)
T PF11968_consen 86 GILQQDFMERPLPKNESEKFDVISLS------------------------------LVLNFVPDP------KQRGEMLRR 129 (219)
T ss_pred CceeeccccCCCCCCcccceeEEEEE------------------------------EEEeeCCCH------HHHHHHHHH
Confidence 56666777666654445567777651 112455531 112356789
Q ss_pred HhcccccCCE-----EEEEEeec---cCCCCC----CCCCCCCCeeEEeE
Q 028754 84 AGRMLVMGGR-----LVYFYPVL---REDSTR----NPFPEHPCFKLVAS 121 (204)
Q Consensus 84 Aa~lL~~gGR-----Lvf~LP~~---~~e~~e----~~lp~h~gl~Lv~~ 121 (204)
|.++|+++|. |-++||.. +.-+.. ..+-..-||..+..
T Consensus 130 ~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 130 AHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred HHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEE
Confidence 9999999999 99999954 223321 12334557777765
No 122
>PLN02366 spermidine synthase
Probab=67.28 E-value=6.8 Score=35.44 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=16.7
Q ss_pred HHHHHHHhcccccCCEEEE
Q 028754 78 HDLLDLAGRMLVMGGRLVY 96 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf 96 (204)
.++++.+.++|++||.+|.
T Consensus 186 ~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 186 KPFFESVARALRPGGVVCT 204 (308)
T ss_pred HHHHHHHHHhcCCCcEEEE
Confidence 5778889999999999986
No 123
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=66.67 E-value=11 Score=31.12 Aligned_cols=17 Identities=29% Similarity=0.049 Sum_probs=13.1
Q ss_pred HHhcccccCCEEEEEEe
Q 028754 83 LAGRMLVMGGRLVYFYP 99 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~LP 99 (204)
...++|++||+|++.+.
T Consensus 160 ~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 160 ALLEQLKEGGILVAPVG 176 (212)
T ss_pred HHHHhcCCCcEEEEEEc
Confidence 34578999999987654
No 124
>KOG2356 consensus Transcriptional activator, adenine-specific DNA methyltransferase [Transcription; Signal transduction mechanisms]
Probab=66.43 E-value=5.2 Score=36.91 Aligned_cols=50 Identities=22% Similarity=0.293 Sum_probs=31.5
Q ss_pred cceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHHHHHHHH-HhcccccCCEEEEEE
Q 028754 21 EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDL-AGRMLVMGGRLVYFY 98 (204)
Q Consensus 21 ~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~~DLL~~-Aa~lL~~gGRLvf~L 98 (204)
..+|.||-|||+-.....|. ..|++.+=+.+|++. ..+++.+.|-++||.
T Consensus 183 llpdlIIiDPPW~NKSVkRs----------------------------~~Ysmlsnl~ql~~IPI~kl~~p~~lvA~Wc 233 (366)
T KOG2356|consen 183 LLPDLIIIDPPWFNKSVKRS----------------------------RTYSMLSNLLQLLDIPIIKLHDPLCLVAFWC 233 (366)
T ss_pred hcCCeEEeCCCCCCcccccc----------------------------cceecccchhhhhcCCchhhcCCCceEEEEE
Confidence 46799999999987443332 124444434344433 345677888999994
No 125
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=66.26 E-value=5.9 Score=36.34 Aligned_cols=29 Identities=31% Similarity=0.274 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcccccCCEEEEEEeeccC
Q 028754 75 ECVHDLLDLAGRMLVMGGRLVYFYPVLRE 103 (204)
Q Consensus 75 ~l~~DLL~~Aa~lL~~gGRLvf~LP~~~~ 103 (204)
+-+..+|..|-.+|++|||||++.=+..+
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~VIsFHSLE 249 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAVISFHSLE 249 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEecchH
Confidence 34678899999999999999999665544
No 126
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=66.01 E-value=6.1 Score=28.89 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.6
Q ss_pred HHHHHHHHhcccccCCEEEEE
Q 028754 77 VHDLLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf~ 97 (204)
+..+++.+.++|++||++++-
T Consensus 101 ~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 101 LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred HHHHHHHHHHHcCCCCEEEEE
Confidence 468999999999999999764
No 127
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=65.67 E-value=4.7 Score=36.01 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.5
Q ss_pred HHHHHHHhcccccCCEEEEEEeecc
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYPVLR 102 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP~~~ 102 (204)
.+.|+-+.+.|++||++||.+|+.+
T Consensus 175 W~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 175 WNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred HHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 4678899999999999999999985
No 128
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=65.65 E-value=6.1 Score=35.99 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=19.0
Q ss_pred HHHHHHHhcccccCCEEEEEEe
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYP 99 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP 99 (204)
..+|...+++|++||++++-.+
T Consensus 215 ~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 215 AEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HHHHHHHHHHcCCCcEEEEEEC
Confidence 4688899999999999988755
No 129
>PLN02823 spermine synthase
Probab=65.54 E-value=5.4 Score=36.61 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=16.3
Q ss_pred HHHH-HHhcccccCCEEEEEE
Q 028754 79 DLLD-LAGRMLVMGGRLVYFY 98 (204)
Q Consensus 79 DLL~-~Aa~lL~~gGRLvf~L 98 (204)
++++ .+.++|++||-++++.
T Consensus 200 eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 200 SFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred HHHHHHHHHhcCCCcEEEEec
Confidence 5566 7789999999998874
No 130
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=65.35 E-value=6.3 Score=35.67 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcccccCCEEEEEEeec
Q 028754 76 CVHDLLDLAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 76 l~~DLL~~Aa~lL~~gGRLvf~LP~~ 101 (204)
-+..+|..|..+|++||||+++.=+.
T Consensus 214 ~L~~~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 214 ELERALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 35677889999999999999995544
No 131
>PTZ00146 fibrillarin; Provisional
Probab=65.17 E-value=14 Score=33.62 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=17.2
Q ss_pred HHHHHHHhcccccCCEEEEEEe
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYP 99 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP 99 (204)
..++..|.++|++||++++...
T Consensus 217 ~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 217 RIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred HHHHHHHHHhccCCCEEEEEEe
Confidence 3455678999999999999544
No 132
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=64.87 E-value=2.4 Score=37.89 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=17.8
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCC
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPP 31 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPP 31 (204)
+.++.+|+....... .+.||+||+|||
T Consensus 223 v~~~~~D~~~~~~~~--~~~~D~Vv~dPP 249 (315)
T PRK03522 223 VQFQALDSTQFATAQ--GEVPDLVLVNPP 249 (315)
T ss_pred eEEEEcCHHHHHHhc--CCCCeEEEECCC
Confidence 356777776533211 236999999999
No 133
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=62.41 E-value=9.5 Score=32.93 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcccccCCEEEEE
Q 028754 75 ECVHDLLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 75 ~l~~DLL~~Aa~lL~~gGRLvf~ 97 (204)
+-+..++......|.+||.|++-
T Consensus 123 ~~L~~~l~~l~~~L~pgG~LV~g 145 (201)
T PF05401_consen 123 EDLRAALDRLVAALAPGGHLVFG 145 (201)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEE
Confidence 45778888999999999999996
No 134
>PRK04457 spermidine synthase; Provisional
Probab=60.67 E-value=11 Score=32.92 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=18.9
Q ss_pred HHHHHHHHhcccccCCEEEEEE
Q 028754 77 VHDLLDLAGRMLVMGGRLVYFY 98 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf~L 98 (204)
..++++.+.++|++||.+++-+
T Consensus 156 t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 156 TQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred cHHHHHHHHHhcCCCcEEEEEc
Confidence 3688899999999999999843
No 135
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=59.66 E-value=6.5 Score=35.94 Aligned_cols=28 Identities=32% Similarity=0.240 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcccccCCEEEEEEeeccC
Q 028754 76 CVHDLLDLAGRMLVMGGRLVYFYPVLRE 103 (204)
Q Consensus 76 l~~DLL~~Aa~lL~~gGRLvf~LP~~~~ 103 (204)
-+..+|..|..+|++||||+++.=+..+
T Consensus 219 ~L~~~L~~a~~~L~~gGrl~VISFHSLE 246 (310)
T PF01795_consen 219 ELERGLEAAPDLLKPGGRLVVISFHSLE 246 (310)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEESSHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEecchh
Confidence 4567888999999999999999655433
No 136
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=58.05 E-value=9.6 Score=35.82 Aligned_cols=60 Identities=28% Similarity=0.335 Sum_probs=40.0
Q ss_pred cceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCC-CcChHHHHHHHHHHHhcccccCCEEEEE
Q 028754 21 EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTA-PYCLSECVHDLLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 21 ~~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~-~Y~l~~l~~DLL~~Aa~lL~~gGRLvf~ 97 (204)
..||=|+||=|=--=-..|+.. ..+.+-+ .+. .+.|-.+-..||..+.++|++||+|||=
T Consensus 235 ~~fDrVLvDVPCS~Dgt~rk~~-----~i~~~~w------------~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYS 295 (375)
T KOG2198|consen 235 LKFDRVLVDVPCSGDGTLRKNP-----NIWKEGW------------KTQRALGLHALQLRILRRGLRLLKVGGRLVYS 295 (375)
T ss_pred hhcceeEEecccCCCcccccCc-----hHhhhhh------------hhhhccCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4899999998864432222211 0000000 012 3678899999999999999999999986
No 137
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=57.86 E-value=16 Score=31.80 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=20.5
Q ss_pred HHHHHHHhcccccCCEEEEEEeec
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP~~ 101 (204)
.++++.+.++|++||-++++....
T Consensus 171 ~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 171 REFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEET
T ss_pred HHHHHHHHhhcCCCcEEEEEccCc
Confidence 567889999999999999998543
No 138
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=57.74 E-value=9 Score=36.77 Aligned_cols=50 Identities=26% Similarity=0.272 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHhcccccCCEEEEEE----eeccCCCCCCCCCCCCCeeEEeEE
Q 028754 73 LSECVHDLLDLAGRMLVMGGRLVYFY----PVLREDSTRNPFPEHPCFKLVASS 122 (204)
Q Consensus 73 l~~l~~DLL~~Aa~lL~~gGRLvf~L----P~~~~e~~e~~lp~h~gl~Lv~~~ 122 (204)
+..|-..||..|-+++++||.|||-- |..++..++-.|-.+|+++|+-..
T Consensus 346 ~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~~ 399 (460)
T KOG1122|consen 346 YAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPTG 399 (460)
T ss_pred hHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCceEecccc
Confidence 45677899999999999999998853 333332222245678888888665
No 139
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=57.18 E-value=15 Score=30.19 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHhcccccCCEEEEEEeeccCC-C-CCCCCCCCCCeeEEeEE
Q 028754 73 LSECVHDLLDLAGRMLVMGGRLVYFYPVLRED-S-TRNPFPEHPCFKLVASS 122 (204)
Q Consensus 73 l~~l~~DLL~~Aa~lL~~gGRLvf~LP~~~~e-~-~e~~lp~h~gl~Lv~~~ 122 (204)
-.+|+.+++..|.++|+++|++.+-+-....- . .-..++++.||.|+...
T Consensus 100 nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 100 NRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKV 151 (166)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEe
Confidence 47899999999999999999998887654331 0 11366777788777653
No 140
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=57.12 E-value=9.1 Score=29.21 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.6
Q ss_pred HHHHHHHHhcccccCCEEEEEEeec
Q 028754 77 VHDLLDLAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf~LP~~ 101 (204)
...+|+...++|++||++++..|..
T Consensus 94 ~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 94 PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 6788999999999999999999864
No 141
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=56.52 E-value=5.9 Score=35.51 Aligned_cols=31 Identities=16% Similarity=0.379 Sum_probs=24.2
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccccc
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGG 38 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe~~ 38 (204)
+.++.+|+....|. .||.||+++||.|....
T Consensus 87 v~ii~~Dal~~~~~-----~~d~VvaNlPY~Istpi 117 (294)
T PTZ00338 87 LEVIEGDALKTEFP-----YFDVCVANVPYQISSPL 117 (294)
T ss_pred EEEEECCHhhhccc-----ccCEEEecCCcccCcHH
Confidence 46788888776552 57999999999997544
No 142
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=56.13 E-value=4 Score=37.57 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=16.6
Q ss_pred ceeEeeCCCCCCCCCCccceeEEEeCCCC
Q 028754 4 GLLRADNNLPPWRPGLKEVFDAIICDPPY 32 (204)
Q Consensus 4 dvl~~D~t~~p~R~~~~~~fDAIVtDPPY 32 (204)
.++.+|+....... .+.||.||.||||
T Consensus 284 ~~~~~d~~~~~~~~--~~~~D~vi~DPPr 310 (374)
T TIGR02085 284 SFAALDSAKFATAQ--MSAPELVLVNPPR 310 (374)
T ss_pred EEEECCHHHHHHhc--CCCCCEEEECCCC
Confidence 45666764322111 1258999999996
No 143
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=53.66 E-value=16 Score=29.32 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=21.9
Q ss_pred cChHHHHHHHHHHHhcccccCCEEEEEE
Q 028754 71 YCLSECVHDLLDLAGRMLVMGGRLVYFY 98 (204)
Q Consensus 71 Y~l~~l~~DLL~~Aa~lL~~gGRLvf~L 98 (204)
+...++...-|.+|.++|++||.+++-+
T Consensus 112 ~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 112 FISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 3455677777779999999999987763
No 144
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=53.24 E-value=11 Score=26.93 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcccccCCEE
Q 028754 75 ECVHDLLDLAGRMLVMGGRL 94 (204)
Q Consensus 75 ~l~~DLL~~Aa~lL~~gGRL 94 (204)
+-...+|..+.++|++||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 33568999999999999986
No 145
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=52.19 E-value=7.7 Score=33.97 Aligned_cols=31 Identities=10% Similarity=0.168 Sum_probs=23.4
Q ss_pred CceeEeeCCCCCCCCCCccceeEEEeCCCCcccc
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRA 36 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~~~~~fDAIVtDPPYGiRe 36 (204)
+.++.+|+...++..- ..|.||+.|||.+-.
T Consensus 89 v~~i~~D~~~~~~~~~---~~~~vv~NlPY~iss 119 (272)
T PRK00274 89 LTIIEGDALKVDLSEL---QPLKVVANLPYNITT 119 (272)
T ss_pred eEEEEChhhcCCHHHc---CcceEEEeCCccchH
Confidence 5678899888766421 269999999999943
No 146
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=52.07 E-value=17 Score=31.15 Aligned_cols=20 Identities=10% Similarity=0.316 Sum_probs=17.2
Q ss_pred HHHHHHHHhcccccCCEEEE
Q 028754 77 VHDLLDLAGRMLVMGGRLVY 96 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf 96 (204)
|.++++.+.++|++||.+++
T Consensus 157 y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 157 YVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HHHHHHHHHHhcCCCeEEEE
Confidence 56778889999999999875
No 147
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=51.93 E-value=22 Score=33.54 Aligned_cols=28 Identities=32% Similarity=0.203 Sum_probs=23.2
Q ss_pred HHHHHHHHhcccccCCEEEEEEeeccCCCC
Q 028754 77 VHDLLDLAGRMLVMGGRLVYFYPVLREDST 106 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf~LP~~~~e~~ 106 (204)
..++|+.++++|++||++.+. |...+++
T Consensus 214 ~~~fL~e~~RvLkpGG~l~l~--TD~~~y~ 241 (390)
T PRK14121 214 SEDFLNEALRVLKPGGTLELR--TDSELYF 241 (390)
T ss_pred HHHHHHHHHHHcCCCcEEEEE--EECHHHH
Confidence 589999999999999999996 5555554
No 148
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=51.75 E-value=13 Score=31.82 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.2
Q ss_pred HHHHHHHHhcccccCCEEEEEE
Q 028754 77 VHDLLDLAGRMLVMGGRLVYFY 98 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf~L 98 (204)
+..+|+.|...|++|||||.=.
T Consensus 114 i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 114 IEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred HHHHHHHHHHHcCcCCeEEEEe
Confidence 5788999999999999998753
No 149
>PRK07402 precorrin-6B methylase; Provisional
Probab=51.24 E-value=16 Score=29.86 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.0
Q ss_pred HHHHHHHHhcccccCCEEEEEEeec
Q 028754 77 VHDLLDLAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf~LP~~ 101 (204)
+.++|+.+.++|++||++++..+..
T Consensus 121 ~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 121 IKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeecH
Confidence 4788999999999999999998765
No 150
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=51.09 E-value=9.6 Score=32.76 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcccccCCEEEEEEeeccCCCCCCCCCCCCCeeEEeEEEEecCCceeEEE
Q 028754 74 SECVHDLLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASSEQILSSRYSRVL 134 (204)
Q Consensus 74 ~~l~~DLL~~Aa~lL~~gGRLvf~LP~~~~e~~e~~lp~h~gl~Lv~~~~Q~l~~k~sR~L 134 (204)
.+.+..++..+.++|++||++++-=........-.......||.++....+ +.|...+
T Consensus 189 ~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~---~~W~~~~ 246 (250)
T PRK00517 189 ANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER---GEWVALV 246 (250)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe---CCEEEEE
Confidence 466788999999999999999885222211110012234568888765432 3466543
No 151
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=49.51 E-value=20 Score=33.32 Aligned_cols=19 Identities=21% Similarity=0.113 Sum_probs=15.0
Q ss_pred HHHHHHhcccccCCEEEEE
Q 028754 79 DLLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 79 DLL~~Aa~lL~~gGRLvf~ 97 (204)
.+|+.|.+.++.||-|++-
T Consensus 128 ~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 128 PFVDSAIQASAERGLLLVT 146 (374)
T ss_pred HHHHHHHHhcccCCEEEEE
Confidence 4677888888888888776
No 152
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=47.28 E-value=18 Score=30.94 Aligned_cols=23 Identities=26% Similarity=0.105 Sum_probs=19.8
Q ss_pred HHHHHHHhcccccCCEEEEEEee
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYPV 100 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP~ 100 (204)
..+|..+.++|++||++++.+|.
T Consensus 106 ~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 106 ADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred HHHHHHHHHhCCCCcEEEEEcCC
Confidence 56788899999999999997664
No 153
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=47.16 E-value=21 Score=29.36 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=20.2
Q ss_pred HHHHHHHHhcccccCCEEEEEEeec
Q 028754 77 VHDLLDLAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf~LP~~ 101 (204)
+.++|+.+.++|++||++++-.++.
T Consensus 124 ~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 124 LKEIISASWEIIKKGGRIVIDAILL 148 (198)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeecH
Confidence 4678899999999999999755543
No 154
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=41.50 E-value=21 Score=31.68 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcccccCCEEEEE
Q 028754 74 SECVHDLLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 74 ~~l~~DLL~~Aa~lL~~gGRLvf~ 97 (204)
.+.|...|....++|++||.|++.
T Consensus 175 ~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 175 LDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 346899999999999999999887
No 155
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=41.42 E-value=36 Score=29.38 Aligned_cols=74 Identities=20% Similarity=0.160 Sum_probs=47.2
Q ss_pred CceeEeeCCCCCCCCC----Ccc-ceeEEEeCCCCcccccccccCCcccccCcCCCCCCCCCCccCCCCCCCCcChHHHH
Q 028754 3 IGLLRADNNLPPWRPG----LKE-VFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECV 77 (204)
Q Consensus 3 ~dvl~~D~t~~p~R~~----~~~-~fDAIVtDPPYGiRe~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~Y~l~~l~ 77 (204)
+..|.+|++...-... +.+ .+|.|++|+== +..|... .| .+-...+-
T Consensus 87 V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap------~~~g~~~----------------~D------h~r~~~L~ 138 (205)
T COG0293 87 VIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAP------NTSGNRS----------------VD------HARSMYLC 138 (205)
T ss_pred ceEEeeeccCccHHHHHHHHcCCCCcceEEecCCC------CcCCCcc----------------cc------HHHHHHHH
Confidence 3567888887764432 222 36999999621 3334221 11 24466777
Q ss_pred HHHHHHHhcccccCCEEEEEEeeccCCCC
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYPVLREDST 106 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP~~~~e~~ 106 (204)
...+++|...|++||-+ +.....++..
T Consensus 139 ~~a~~~a~~vL~~~G~f--v~K~fqg~~~ 165 (205)
T COG0293 139 ELALEFALEVLKPGGSF--VAKVFQGEDF 165 (205)
T ss_pred HHHHHHHHHeeCCCCeE--EEEEEeCCCH
Confidence 88899999999999975 4556666555
No 156
>PRK05785 hypothetical protein; Provisional
Probab=41.11 E-value=53 Score=27.88 Aligned_cols=26 Identities=15% Similarity=0.411 Sum_probs=19.9
Q ss_pred eeEeeCCCCCCCCCCccceeEEEeCCCCccc
Q 028754 5 LLRADNNLPPWRPGLKEVFDAIICDPPYGVR 35 (204)
Q Consensus 5 vl~~D~t~~p~R~~~~~~fDAIVtDPPYGiR 35 (204)
.+.+|+...|+..+ .||+|+| -|+++
T Consensus 96 ~~~~d~~~lp~~d~---sfD~v~~--~~~l~ 121 (226)
T PRK05785 96 KVVGSFEALPFRDK---SFDVVMS--SFALH 121 (226)
T ss_pred eEEechhhCCCCCC---CEEEEEe--cChhh
Confidence 46788888888765 8999999 44553
No 157
>PF05869 Dam: DNA N-6-adenine-methyltransferase (Dam); InterPro: IPR008593 This family consists of several bacterial and phage DNA N-6-adenine-methyltransferase (Dam) like sequences [].; GO: 0003677 DNA binding, 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine
Probab=40.85 E-value=27 Score=29.39 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=20.2
Q ss_pred HHHHHHHHhcccccCCEEEEEEeec
Q 028754 77 VHDLLDLAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf~LP~~ 101 (204)
++..++.|.++.=..|||.|+.|..
T Consensus 108 ~~~~~~~a~~I~fi~GRl~F~~p~~ 132 (181)
T PF05869_consen 108 FEDALENADEIRFIRGRLKFINPVT 132 (181)
T ss_pred HHHHHhcCCEEEEecCceeeccCCC
Confidence 6666778888877889999999943
No 158
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=39.89 E-value=22 Score=31.46 Aligned_cols=19 Identities=37% Similarity=0.551 Sum_probs=17.7
Q ss_pred HHHHHHHHhcccccCCEEE
Q 028754 77 VHDLLDLAGRMLVMGGRLV 95 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLv 95 (204)
+..+++.+.++|+|||+++
T Consensus 145 ~~~~f~~~~~~LkpgG~~~ 163 (273)
T PF02353_consen 145 YPAFFRKISRLLKPGGRLV 163 (273)
T ss_dssp HHHHHHHHHHHSETTEEEE
T ss_pred HHHHHHHHHHhcCCCcEEE
Confidence 6789999999999999996
No 159
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=39.15 E-value=86 Score=27.22 Aligned_cols=24 Identities=0% Similarity=0.026 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcccccCCEEEEEE
Q 028754 75 ECVHDLLDLAGRMLVMGGRLVYFY 98 (204)
Q Consensus 75 ~l~~DLL~~Aa~lL~~gGRLvf~L 98 (204)
++-.+..+...++|++||++..+.
T Consensus 140 ~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 140 DLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 445666788899999999997774
No 160
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=38.83 E-value=30 Score=29.56 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=18.8
Q ss_pred HHHHHHHhcccccCCEEEEEEee
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYPV 100 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP~ 100 (204)
..+|..+.++|++||+|++..+.
T Consensus 129 ~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 129 KSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred HHHHHHHHHHcCCCeEEEEEEEC
Confidence 46788999999999999876443
No 161
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=37.93 E-value=54 Score=29.87 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=12.9
Q ss_pred HhcccccCCEEEEEEee
Q 028754 84 AGRMLVMGGRLVYFYPV 100 (204)
Q Consensus 84 Aa~lL~~gGRLvf~LP~ 100 (204)
+.+.|++||++++.+..
T Consensus 166 ~~~~LkpgG~Lvv~~~~ 182 (322)
T PRK13943 166 WFTQLKEGGRVIVPINL 182 (322)
T ss_pred HHHhcCCCCEEEEEeCC
Confidence 45689999999876543
No 162
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=37.35 E-value=34 Score=28.97 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=20.3
Q ss_pred HHHHHHHhcccccCCEEEEEEeec
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP~~ 101 (204)
..+|..+.++|++||++++.+|..
T Consensus 110 ~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 110 LELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred HHHHHHHHHhcCCCcEEEEECCCC
Confidence 567888999999999999987653
No 163
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=37.06 E-value=31 Score=28.48 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=19.6
Q ss_pred HHHHHHHhcccccCCEEEEEEee
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYPV 100 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP~ 100 (204)
..+|+.+.++|++||++++.-+.
T Consensus 84 ~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 84 MDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred HHHHHHHHHHcCCCCEEEEEEcc
Confidence 57889999999999999987543
No 164
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=36.64 E-value=39 Score=29.69 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcccccCCEEEEE
Q 028754 75 ECVHDLLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 75 ~l~~DLL~~Aa~lL~~gGRLvf~ 97 (204)
+....+|..+.+.|++||||++.
T Consensus 231 ~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 231 QLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEE
Confidence 34467899999999999999887
No 165
>PRK10904 DNA adenine methylase; Provisional
Probab=36.52 E-value=71 Score=28.07 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcccccCCEEEE
Q 028754 75 ECVHDLLDLAGRMLVMGGRLVY 96 (204)
Q Consensus 75 ~l~~DLL~~Aa~lL~~gGRLvf 96 (204)
+=|..|.+++..+-..||+..+
T Consensus 204 ~dh~~La~~l~~l~~~~~k~il 225 (271)
T PRK10904 204 EQQAHLAEIAEGLVERHIPVLI 225 (271)
T ss_pred HHHHHHHHHHHHHHhCCCEEEE
Confidence 4466777777776555666544
No 166
>PLN02476 O-methyltransferase
Probab=36.07 E-value=41 Score=30.16 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=17.2
Q ss_pred HHHHHHHHhcccccCCEEEE
Q 028754 77 VHDLLDLAGRMLVMGGRLVY 96 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf 96 (204)
|.+.++.+.++|++||.+++
T Consensus 207 Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 207 YQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred HHHHHHHHHHhcCCCcEEEE
Confidence 67888888999999999864
No 167
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=34.95 E-value=60 Score=26.74 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcccccCCEEEEEE
Q 028754 76 CVHDLLDLAGRMLVMGGRLVYFY 98 (204)
Q Consensus 76 l~~DLL~~Aa~lL~~gGRLvf~L 98 (204)
....++..+.++|++||+++++.
T Consensus 112 ~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 112 TIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEE
Confidence 46789999999999999976553
No 168
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=33.81 E-value=21 Score=32.67 Aligned_cols=11 Identities=45% Similarity=0.878 Sum_probs=9.9
Q ss_pred ceeEEEeCCCC
Q 028754 22 VFDAIICDPPY 32 (204)
Q Consensus 22 ~fDAIVtDPPY 32 (204)
.||.||-||||
T Consensus 288 ~~D~v~lDPPR 298 (362)
T PRK05031 288 NFSTIFVDPPR 298 (362)
T ss_pred CCCEEEECCCC
Confidence 48999999996
No 169
>PRK00536 speE spermidine synthase; Provisional
Probab=33.72 E-value=53 Score=29.22 Aligned_cols=10 Identities=40% Similarity=0.780 Sum_probs=8.4
Q ss_pred cceeEEEeCC
Q 028754 21 EVFDAIICDP 30 (204)
Q Consensus 21 ~~fDAIVtDP 30 (204)
+.||.||+|-
T Consensus 138 ~~fDVIIvDs 147 (262)
T PRK00536 138 KKYDLIICLQ 147 (262)
T ss_pred CcCCEEEEcC
Confidence 4799999993
No 170
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.36 E-value=42 Score=28.72 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHhcccccCCEEEEEEeec
Q 028754 72 CLSECVHDLLDLAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 72 ~l~~l~~DLL~~Aa~lL~~gGRLvf~LP~~ 101 (204)
=++|-+.+|.+....+|+|.|+.-|+.|-.
T Consensus 114 FfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 114 FFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred hHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 378999999999999999999988888854
No 171
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=32.18 E-value=41 Score=28.72 Aligned_cols=20 Identities=40% Similarity=0.356 Sum_probs=18.5
Q ss_pred HHHHHHHhcccccCCEEEEE
Q 028754 78 HDLLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~ 97 (204)
..++..+.+.|++||+|++.
T Consensus 144 ~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 144 QALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred HHHHHHHHHhcCCCCEEEEE
Confidence 57899999999999999887
No 172
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=31.85 E-value=62 Score=29.37 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=20.1
Q ss_pred HHHHHHHhcccccCCEEEEEEeec
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP~~ 101 (204)
.+.|..+++.|++||+|++-....
T Consensus 205 ~~~L~el~r~LkpGG~Lvletl~i 228 (314)
T TIGR00452 205 LEHLKQLKHQLVIKGELVLETLVI 228 (314)
T ss_pred HHHHHHHHHhcCCCCEEEEEEEEe
Confidence 468899999999999999875544
No 173
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=31.68 E-value=25 Score=31.59 Aligned_cols=26 Identities=12% Similarity=-0.087 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcccccCCEEEEEEee
Q 028754 75 ECVHDLLDLAGRMLVMGGRLVYFYPV 100 (204)
Q Consensus 75 ~l~~DLL~~Aa~lL~~gGRLvf~LP~ 100 (204)
+=|..|++.+.++=...|-.++..+.
T Consensus 204 ~~~~~La~~~~~l~~~~~i~~~~sn~ 229 (274)
T COG0338 204 DQHLRLAEVLKELEGKRGISVLDSNS 229 (274)
T ss_pred HHHHHHHHHHHhccccceEEEecCcc
Confidence 34778888888876666666666444
No 174
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=30.96 E-value=61 Score=30.17 Aligned_cols=10 Identities=40% Similarity=0.561 Sum_probs=9.2
Q ss_pred ceeEEEeCCC
Q 028754 22 VFDAIICDPP 31 (204)
Q Consensus 22 ~fDAIVtDPP 31 (204)
.||.|+.|||
T Consensus 125 ~fD~V~lDP~ 134 (382)
T PRK04338 125 KFDVVDIDPF 134 (382)
T ss_pred CCCEEEECCC
Confidence 6999999997
No 175
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=29.63 E-value=21 Score=31.06 Aligned_cols=31 Identities=26% Similarity=0.256 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcccccCCEEEEEEeeccCCCCC
Q 028754 75 ECVHDLLDLAGRMLVMGGRLVYFYPVLREDSTR 107 (204)
Q Consensus 75 ~l~~DLL~~Aa~lL~~gGRLvf~LP~~~~e~~e 107 (204)
=+...+|+..++.|++||.|.|- |..+++++
T Consensus 141 l~~~~fl~~~a~~Lk~gG~l~~a--TD~~~y~e 171 (227)
T COG0220 141 LTQPEFLKLYARKLKPGGVLHFA--TDNEEYFE 171 (227)
T ss_pred cCCHHHHHHHHHHccCCCEEEEE--ecCHHHHH
Confidence 34678999999999999999988 77766664
No 176
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=28.75 E-value=32 Score=27.96 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcccccCCEEEEE-EeeccCCCCC--------CCCCCCCCeeEEeEEEEecCCc-eeEEEEEEEE
Q 028754 75 ECVHDLLDLAGRMLVMGGRLVYF-YPVLREDSTR--------NPFPEHPCFKLVASSEQILSSR-YSRVLLTMVK 139 (204)
Q Consensus 75 ~l~~DLL~~Aa~lL~~gGRLvf~-LP~~~~e~~e--------~~lp~h~gl~Lv~~~~Q~l~~k-~sR~Litm~K 139 (204)
+-=...|+.|.++|++||+++++ +|-+.+...| ..++++ .|.++. .+.+|.+ ..-.|+..+|
T Consensus 69 ~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~-~~~V~~--~~~~N~~~~pp~l~~ieK 140 (140)
T PF06962_consen 69 ETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQK-EFNVLK--YQFINQKNNPPLLVIIEK 140 (140)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TT-TEEEEE--EEESS-SS---EEEEEEE
T ss_pred HHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcc-eEEEEE--EEccCCCCCCCEEEEEEC
Confidence 33456688999999999999765 4433321111 145433 676643 4445544 3344444443
No 177
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=28.59 E-value=27 Score=29.40 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=7.3
Q ss_pred ceeEEEeCCCCcccccc
Q 028754 22 VFDAIICDPPYGVRAGG 38 (204)
Q Consensus 22 ~fDAIVtDPPYGiRe~~ 38 (204)
.-|-|-+||||-.+...
T Consensus 177 ~~d~vYlDPPY~~~~~~ 193 (260)
T PF02086_consen 177 PNDFVYLDPPYYSTQYS 193 (260)
T ss_dssp TE-EEEE--S-TT----
T ss_pred CCeEEEEcCccccccCc
Confidence 45889999999775444
No 178
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=28.55 E-value=58 Score=27.02 Aligned_cols=22 Identities=9% Similarity=0.262 Sum_probs=19.2
Q ss_pred HHHHHHHhcccccCCEEEEEEe
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYP 99 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP 99 (204)
..+|+.+.++|++||++++..+
T Consensus 131 ~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 131 ASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred HHHHHHHHHHcCCCcEEEEEec
Confidence 4688999999999999988755
No 179
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=27.79 E-value=68 Score=28.73 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcccccCCEE
Q 028754 75 ECVHDLLDLAGRMLVMGGRL 94 (204)
Q Consensus 75 ~l~~DLL~~Aa~lL~~gGRL 94 (204)
.-+-+.|+...++|++||.-
T Consensus 179 ~Ni~~Yi~tI~~lLkpgG~W 198 (270)
T PF07942_consen 179 ENIIEYIETIEHLLKPGGYW 198 (270)
T ss_pred HHHHHHHHHHHHHhccCCEE
Confidence 33668899999999999943
No 180
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=27.52 E-value=33 Score=31.34 Aligned_cols=14 Identities=50% Similarity=0.769 Sum_probs=11.4
Q ss_pred ceeEEEeCCCCcccccc
Q 028754 22 VFDAIICDPPYGVRAGG 38 (204)
Q Consensus 22 ~fDAIVtDPPYGiRe~~ 38 (204)
.||.||.||| |+|.
T Consensus 279 ~~d~v~lDPP---R~G~ 292 (353)
T TIGR02143 279 NCSTIFVDPP---RAGL 292 (353)
T ss_pred CCCEEEECCC---CCCC
Confidence 3799999999 5664
No 181
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=27.43 E-value=60 Score=28.60 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcccccCCEEEEEEe
Q 028754 74 SECVHDLLDLAGRMLVMGGRLVYFYP 99 (204)
Q Consensus 74 ~~l~~DLL~~Aa~lL~~gGRLvf~LP 99 (204)
.+.+..++..+.++|++||+|++.-.
T Consensus 235 ~~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 235 AEVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 34567899999999999999988643
No 182
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=27.29 E-value=49 Score=27.82 Aligned_cols=23 Identities=26% Similarity=-0.009 Sum_probs=19.6
Q ss_pred HHHHHHHHhcccccCCEEEEEEe
Q 028754 77 VHDLLDLAGRMLVMGGRLVYFYP 99 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf~LP 99 (204)
...+|+.+.+.|++||++++.=+
T Consensus 140 ~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 140 RIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred HHHHHHHHHHhcCCCeEEEEeec
Confidence 46789999999999999988744
No 183
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=26.70 E-value=48 Score=29.41 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=17.5
Q ss_pred HHHHHHhcccccCCEEEEEEe
Q 028754 79 DLLDLAGRMLVMGGRLVYFYP 99 (204)
Q Consensus 79 DLL~~Aa~lL~~gGRLvf~LP 99 (204)
.-|+.-.++|+||||+-||=-
T Consensus 163 k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 163 KQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred HHHHHHHHhcCCCcEEEEEec
Confidence 457788999999999999833
No 184
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=25.43 E-value=62 Score=29.00 Aligned_cols=23 Identities=39% Similarity=0.706 Sum_probs=19.6
Q ss_pred CceeEeeCCCC-CCCCCCccceeEEEe
Q 028754 3 IGLLRADNNLP-PWRPGLKEVFDAIIC 28 (204)
Q Consensus 3 ~dvl~~D~t~~-p~R~~~~~~fDAIVt 28 (204)
.|++.+|+... |||.+ .||++|.
T Consensus 95 gdlil~DMG~GlpfrpG---tFDg~IS 118 (270)
T KOG1541|consen 95 GDLILCDMGEGLPFRPG---TFDGVIS 118 (270)
T ss_pred cCeeeeecCCCCCCCCC---ccceEEE
Confidence 48999999964 89987 9999985
No 185
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=25.13 E-value=38 Score=29.60 Aligned_cols=11 Identities=45% Similarity=1.017 Sum_probs=9.5
Q ss_pred eEEEeCCCCcc
Q 028754 24 DAIICDPPYGV 34 (204)
Q Consensus 24 DAIVtDPPYGi 34 (204)
|.|=|||||=.
T Consensus 174 dfvYlDPPY~~ 184 (266)
T TIGR00571 174 SFVYCDPPYLP 184 (266)
T ss_pred CEEEECCCCCC
Confidence 68999999964
No 186
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=24.68 E-value=48 Score=28.70 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=39.3
Q ss_pred HHHHHHHHhcccccCCEEEEEEe-eccCCCCCCCCC-CCCCeeEEeEEEEecCCc-eeEEEEEEEEcC
Q 028754 77 VHDLLDLAGRMLVMGGRLVYFYP-VLREDSTRNPFP-EHPCFKLVASSEQILSSR-YSRVLLTMVKIG 141 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf~LP-~~~~e~~e~~lp-~h~gl~Lv~~~~Q~l~~k-~sR~Litm~K~~ 141 (204)
+.+|++.|..+|+.||+++++.= ...++..+...+ ..-++.++......+... -.|.|+...|.+
T Consensus 147 L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~~r~l~ii~~~k 214 (215)
T COG0357 147 LNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPELDGERHLVIIRKRK 214 (215)
T ss_pred hHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecCCCCCceEEEEEeccC
Confidence 57899999999999999865433 333333322221 122555555554444433 458888887754
No 187
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=23.63 E-value=44 Score=31.05 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=16.9
Q ss_pred ceeEeeCCCC--CCCCCCccceeEEEeCCCC
Q 028754 4 GLLRADNNLP--PWRPGLKEVFDAIICDPPY 32 (204)
Q Consensus 4 dvl~~D~t~~--p~R~~~~~~fDAIVtDPPY 32 (204)
.++.+|+... .+... ...||.||.|||+
T Consensus 343 ~~~~~d~~~~l~~~~~~-~~~~D~vi~dPPr 372 (431)
T TIGR00479 343 EFLAGTLETVLPKQPWA-GQIPDVLLLDPPR 372 (431)
T ss_pred EEEeCCHHHHHHHHHhc-CCCCCEEEECcCC
Confidence 4567776531 11110 1269999999995
No 188
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=23.02 E-value=86 Score=27.67 Aligned_cols=50 Identities=20% Similarity=0.043 Sum_probs=31.3
Q ss_pred HHHHHHHhcccccCCEEEEEEeeccCCCCC---------CCCCCCCCeeEEeEE-EEecC
Q 028754 78 HDLLDLAGRMLVMGGRLVYFYPVLREDSTR---------NPFPEHPCFKLVASS-EQILS 127 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~LP~~~~e~~e---------~~lp~h~gl~Lv~~~-~Q~l~ 127 (204)
.-++..|...|++||.+++.+.+..-+... ...-...+|+++... ..+++
T Consensus 158 ~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~ 217 (229)
T PF01269_consen 158 RIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYE 217 (229)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTS
T ss_pred HHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCCC
Confidence 456778889999999999999875322210 111224478887665 55665
No 189
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=22.92 E-value=89 Score=23.29 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcccccCCEEEEEEeec
Q 028754 74 SECVHDLLDLAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 74 ~~l~~DLL~~Aa~lL~~gGRLvf~LP~~ 101 (204)
+.+.-+.|..++.+|+-||-|++++|..
T Consensus 21 ~g~~pnal~a~~gtv~gGGllill~p~~ 48 (92)
T PF08351_consen 21 EGFDPNALAALAGTVRGGGLLILLLPPW 48 (92)
T ss_dssp S---HHHHHHHHTTB-TT-EEEEEES-G
T ss_pred CCCCHHHHHHHhcceecCeEEEEEcCCH
Confidence 3456788999999999999999999965
No 190
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=22.68 E-value=60 Score=29.46 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=17.3
Q ss_pred HHHHHHHHhcccccCCEEEE
Q 028754 77 VHDLLDLAGRMLVMGGRLVY 96 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf 96 (204)
.+++|+.+.++|+|||+|.+
T Consensus 174 p~~~l~~l~~~lkP~G~lfi 193 (282)
T KOG1270|consen 174 PQEFLNCLSALLKPNGRLFI 193 (282)
T ss_pred HHHHHHHHHHHhCCCCceEe
Confidence 56789999999999999954
No 191
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=22.55 E-value=1.1e+02 Score=27.02 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=10.8
Q ss_pred cCCEEEEEEeecc
Q 028754 90 MGGRLVYFYPVLR 102 (204)
Q Consensus 90 ~gGRLvf~LP~~~ 102 (204)
+.|-.++|+|.-.
T Consensus 156 ~~G~~~iWYPi~~ 168 (245)
T PF04378_consen 156 PTGVYAIWYPIKD 168 (245)
T ss_dssp TTSEEEEEEEESS
T ss_pred CCcEEEEEeeccc
Confidence 4799999999864
No 192
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=22.03 E-value=98 Score=28.68 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=20.9
Q ss_pred HHHHHHHHhcccccCCEEEEEEeec
Q 028754 77 VHDLLDLAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf~LP~~ 101 (204)
+..+++.+.++|++||++++.....
T Consensus 246 ~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 246 YRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccC
Confidence 4678999999999999999875543
No 193
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=21.88 E-value=82 Score=26.75 Aligned_cols=22 Identities=27% Similarity=0.199 Sum_probs=18.6
Q ss_pred HHHHhcccccCCEEEEEEeecc
Q 028754 81 LDLAGRMLVMGGRLVYFYPVLR 102 (204)
Q Consensus 81 L~~Aa~lL~~gGRLvf~LP~~~ 102 (204)
+..+.++|++||+|-+-+|.-.
T Consensus 94 m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 94 MAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred HHHHHHhhccCCeEEEEeecCC
Confidence 3467789999999999999864
No 194
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=21.63 E-value=84 Score=28.76 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHHHhcccccCCEEEEEEeec
Q 028754 72 CLSECVHDLLDLAGRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 72 ~l~~l~~DLL~~Aa~lL~~gGRLvf~LP~~ 101 (204)
+-.+-...+|..++.+|++||++..-.|-.
T Consensus 160 ese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 160 ESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp SSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 456777889999999999999999998854
No 195
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=21.58 E-value=36 Score=30.49 Aligned_cols=19 Identities=42% Similarity=0.632 Sum_probs=16.4
Q ss_pred cceeEEEeCCCCccccccc
Q 028754 21 EVFDAIICDPPYGVRAGGR 39 (204)
Q Consensus 21 ~~fDAIVtDPPYGiRe~~r 39 (204)
..||.||||=|=||-.|.+
T Consensus 112 ~~fDyIi~DsPAGIE~G~~ 130 (272)
T COG2894 112 MDFDYIIIDSPAGIEQGFK 130 (272)
T ss_pred cCCCEEEecCcchHHHHHH
Confidence 4799999999999977765
No 196
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=21.38 E-value=1e+02 Score=26.18 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcccccCCEEEEE
Q 028754 75 ECVHDLLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 75 ~l~~DLL~~Aa~lL~~gGRLvf~ 97 (204)
+.....++...++|++||++.++
T Consensus 129 ~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 129 EMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEE
Confidence 45677899999999999997665
No 197
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=20.73 E-value=61 Score=27.08 Aligned_cols=42 Identities=31% Similarity=0.497 Sum_probs=30.1
Q ss_pred HHHHHHHHhcccccCCEEEEEEeeccCCCCCC---CCCC-CCCeeEEe
Q 028754 77 VHDLLDLAGRMLVMGGRLVYFYPVLREDSTRN---PFPE-HPCFKLVA 120 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf~LP~~~~e~~e~---~lp~-h~gl~Lv~ 120 (204)
..++|+..+++|++||+|.|. |...++.+. .+.. |++|+.+.
T Consensus 112 ~~~fl~~~~~~L~~gG~l~~~--TD~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 112 NPEFLELLARVLKPGGELYFA--TDVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp SHHHHHHHHHHEEEEEEEEEE--ES-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred CchHHHHHHHHcCCCCEEEEE--eCCHHHHHHHHHHHHhcCcCeEEcc
Confidence 368899999999999999888 666665532 4445 67777664
No 198
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=20.22 E-value=68 Score=23.71 Aligned_cols=20 Identities=40% Similarity=0.504 Sum_probs=18.0
Q ss_pred HHHHHHHhcccccCCEEEEE
Q 028754 78 HDLLDLAGRMLVMGGRLVYF 97 (204)
Q Consensus 78 ~DLL~~Aa~lL~~gGRLvf~ 97 (204)
.+.++.+.++|+++|+++++
T Consensus 69 ~~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHhccCCEEEEE
Confidence 46788899999999999998
No 199
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=20.19 E-value=80 Score=26.40 Aligned_cols=22 Identities=41% Similarity=0.683 Sum_probs=19.4
Q ss_pred HHHHHHHHhcccccCCEEEEEE
Q 028754 77 VHDLLDLAGRMLVMGGRLVYFY 98 (204)
Q Consensus 77 ~~DLL~~Aa~lL~~gGRLvf~L 98 (204)
+..|++.+..+|++||++.++-
T Consensus 127 l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp HHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEc
Confidence 4688999999999999998874
Done!