Query 028754
Match_columns 204
No_of_seqs 167 out of 321
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 18:10:47 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028754.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2248-2252//hhsearch_pdb/028754hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tma_A Methyltransferase; thum 1.0 1 1 73.9 5.9 99 3-140 256-354 (354)
2 3lpm_A Putative methyltransfer 1.0 1 1 64.9 3.5 118 3-141 101-220 (259)
3 2ozv_A Hypothetical protein AT 1.0 1 1 62.5 5.2 113 3-141 92-213 (260)
4 3tm4_A TRNA (guanine N2-)-meth 1.0 1 1 61.6 4.6 99 3-141 270-369 (373)
5 3khk_A Type I restriction-modi 1.0 1 1 57.2 5.6 85 5-101 314-398 (544)
6 3s1s_A Restriction endonucleas 1.0 1 1 57.0 0.7 112 21-142 398-519 (878)
7 2ih2_A Modification methylase 1.0 1 1 56.8 3.5 123 3-141 83-212 (421)
8 1sqg_A SUN protein, FMU protei 1.0 1 1 55.8 -1.1 98 3-120 297-400 (429)
9 2b9e_A NOL1/NOP2/SUN domain fa 1.0 1 1 54.6 1.8 102 3-120 155-261 (309)
10 3evz_A Methyltransferase; NYSG 1.0 1 1 54.4 5.4 115 3-142 106-222 (230)
No 1
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=73.93 Aligned_cols=99 Identities=25% Similarity=0.274 Sum_probs=73.1
Q ss_pred CCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 75368308999988998641008881899853332232587545567678987789986688898997676899999999
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~ 82 (204)
+.++.+|+...++..+ .||.||||||||.|-+.. .++.+++..+++
T Consensus 256 i~~~~~D~~~~~~~~~---~~D~Ii~npPyg~r~~~~-------------------------------~~~~~~~~~~~~ 301 (354)
T 3tma_A 256 IRFLRADARHLPRFFP---EVDRILANPPHGLRLGRK-------------------------------EGLFHLYWDFLR 301 (354)
T ss_dssp CEEEECCGGGGGGTCC---CCSEEEECCCSCC----C-------------------------------HHHHHHHHHHHH
T ss_pred EEEEECCHHHCCCCCC---CCCEEEECCCCCCCCCCC-------------------------------CCHHHHHHHHHH
T ss_conf 4899677434865569---999999899986755775-------------------------------328999999999
Q ss_pred HHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEC
Q ss_conf 9850120697899997200588788988888990688279983489104999999971
Q 028754 83 LAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASSEQILSSRYSRVLLTMVKI 140 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~lP~~~de~~e~~lp~h~gl~Li~~~~Q~l~~k~sR~Litm~K~ 140 (204)
.+.++|++||+++++.|.. +.. ..+.. .+|+.... ....++...+.+++++|.
T Consensus 302 ~~~~~LkpgG~l~i~t~~~--~~~-~~~~~-~g~~~~~~-~~l~~g~l~~~i~vl~rl 354 (354)
T 3tma_A 302 GALALLPPGGRVALLTLRP--ALL-KRALP-PGFALRHA-RVVEQGGVYPRVFVLEKL 354 (354)
T ss_dssp HHHHTSCTTCEEEEEESCH--HHH-HHHCC-TTEEEEEE-EECCBTTBCCEEEEEEEC
T ss_pred HHHHHCCCCCEEEEEECCH--HHH-HHHHH-CCCEEEEE-EEEEECCEEEEEEEEECC
T ss_conf 9998637883899995899--999-99863-69389999-999819988999999739
No 2
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=1.00 E-value=1 Score=64.89 Aligned_cols=118 Identities=19% Similarity=0.131 Sum_probs=75.3
Q ss_pred CCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 75368308999988998641008881899853332232587545567678987789986688898997676899999999
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~ 82 (204)
+.++.+|+...+.... .+.||.|||||||....+... ..+... ...+.++....+.+++.
T Consensus 101 v~~~~~D~~~~~~~~~-~~~fD~Ii~npPy~~~~~~~~---~~~~~~----------------~~~a~~~~~~~~~~~l~ 160 (259)
T 3lpm_A 101 IEIIEYDLKKITDLIP-KERADIVTCNPPYFATPDTSL---KNTNEH----------------FRIARHEVMCTLEDTIR 160 (259)
T ss_dssp EEEECSCGGGGGGTSC-TTCEEEEEECCCC------------------------------------------HHHHHHHH
T ss_pred EEEEECCHHHHHHHHC-CCCCCEEEECCCCCCCCCCCC---CCCCHH----------------HHHHHCCCCCCHHHHHH
T ss_conf 7999875788665406-688238998989978866667---797368----------------88643256689999999
Q ss_pred HHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEE-EEECCCC-EEEEEEEEEECC
Q ss_conf 9850120697899997200588788988888990688279-9834891-049999999719
Q 028754 83 LAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASS-EQILSSR-YSRVLLTMVKIG 141 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~lP~~~de~~e~~lp~h~gl~Li~~~-~Q~l~~k-~sR~Litm~K~~ 141 (204)
.+.++|++||+++++.|....... .......+|.+.... ++...++ ..|.|+...|..
T Consensus 161 ~~~~~LkpgG~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k~~ 220 (259)
T 3lpm_A 161 VAASLLKQGGKANFVHRPERLLDI-IDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIKDG 220 (259)
T ss_dssp HHHHHEEEEEEEEEEECTTTHHHH-HHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEETC
T ss_pred HHHHHCCCCCEEEEEECHHHHHHH-HHHHHHCCCCEEEEEEEECCCCCCCEEEEEEEEECC
T ss_conf 999970479599999848999999-999998799618999961699898679999999589
No 3
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=1.00 E-value=1 Score=62.52 Aligned_cols=113 Identities=21% Similarity=0.213 Sum_probs=70.3
Q ss_pred CCEEEEECCCC-------CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 75368308999-------98899864100888189985333223258754556767898778998668889899767689
Q 028754 3 IGLLRADNNLP-------PWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSE 75 (204)
Q Consensus 3 ~dil~~D~~~~-------p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~ 75 (204)
+.++.+|+... .+.. +.||.|||||||....+.. .+... + ..+.+....
T Consensus 92 v~~~~~D~~~~~~~~~~~~~~~---~~fD~Vv~nPPy~~~~~~~-----~~~~~-----------~-----~~a~~~~~~ 147 (260)
T 2ozv_A 92 IEVLEADVTLRAKARVEAGLPD---EHFHHVIMNPPYNDAGDRR-----TPDAL-----------K-----AEAHAMTEG 147 (260)
T ss_dssp EEEEECCTTCCHHHHHHTTCCT---TCEEEEEECCCC------------------------------------------C
T ss_pred EEEEECCHHHHHHHHHHHCCCC---CCCCEEEECCCCCCCCCCC-----CCCHH-----------H-----HHHHHCCCC
T ss_conf 9999277777755432210477---8727799797975787878-----96878-----------9-----887632767
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEE-EEECCCC-EEEEEEEEEECC
Q ss_conf 99999999850120697899997200588788988888990688279-9834891-049999999719
Q 028754 76 CVHDLLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASS-EQILSSR-YSRVLLTMVKIG 141 (204)
Q Consensus 76 l~~dLL~~Aa~lL~~gGRLvf~lP~~~de~~e~~lp~h~gl~Li~~~-~Q~l~~k-~sR~Litm~K~~ 141 (204)
.+.+++..+.++|++||+++++.|......+...+ .. .|..+... +.....+ ..|.|+...|..
T Consensus 148 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l-~~-~~~~~~i~~v~~~~~~~~~~~lv~~~k~~ 213 (260)
T 2ozv_A 148 LFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAAC-GS-RFGGLEITLIHPRPGEDAVRMLVTAIKGS 213 (260)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHH-TT-TEEEEEEEEEESSTTSCCCEEEEEEEETC
T ss_pred CHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHH-HH-CCCCEEEEEECCCCCCCCEEEEEEEEECC
T ss_conf 89999999999718798899997487899999999-82-48965999974899998569999998489
No 4
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=1.00 E-value=1 Score=61.60 Aligned_cols=99 Identities=13% Similarity=0.213 Sum_probs=69.2
Q ss_pred CCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 75368308999988998641008881899853332232587545567678987789986688898997676899999999
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~ 82 (204)
+.++.+|+...++..+ .||.||||||||.|.+... .+.+++..+++
T Consensus 270 i~~~~~D~~~~~~~~~---~fD~Ii~npPyg~r~~~~~-------------------------------~~~~ly~~~~~ 315 (373)
T 3tm4_A 270 IKFIQGDATQLSQYVD---SVDFAISNLPYGLKIGKKS-------------------------------MIPDLYMKFFN 315 (373)
T ss_dssp CEEEECCGGGGGGTCS---CEEEEEEECCCC------C-------------------------------CHHHHHHHHHH
T ss_pred EEEEECCHHHCCCCCC---CCCEEEECCCCCCCCCCCH-------------------------------HHHHHHHHHHH
T ss_conf 4999978466874359---9678999999776157602-------------------------------28999999999
Q ss_pred HHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCC-EEEEEEEEEECC
Q ss_conf 98501206978999972005887889888889906882799834891-049999999719
Q 028754 83 LAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASSEQILSSR-YSRVLLTMVKIG 141 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf~lP~~~de~~e~~lp~h~gl~Li~~~~Q~l~~k-~sR~Litm~K~~ 141 (204)
.+.++| +|+++|+.+.. +.++ ......||++..... ..++. .+|.+.+..+.+
T Consensus 316 ~l~r~l--~g~~~~i~~~~--~~~~-~~~~~~G~~~~~~~~-~~nG~l~~~~~~~~~~~~ 369 (373)
T 3tm4_A 316 ELAKVL--EKRGVFITTEK--KAIE-EAIAENGFEIIHHRV-IGHGGLMVHLYVVKLEHH 369 (373)
T ss_dssp HHHHHE--EEEEEEEESCH--HHHH-HHHHHTTEEEEEEEE-EEETTEEEEEEEEEETTC
T ss_pred HHHHHC--CCEEEEEECCH--HHHH-HHHHHCCCEEEEEEE-EECCCEEEEEEECCCCCC
T ss_conf 999975--99099998788--9999-999973987878999-975988999995358667
No 5
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=1.00 E-value=1 Score=57.23 Aligned_cols=85 Identities=14% Similarity=0.079 Sum_probs=47.1
Q ss_pred EEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 36830899998899864100888189985333223258754556767898778998668889899767689999999998
Q 028754 5 LLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLA 84 (204)
Q Consensus 5 il~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~A 84 (204)
+..+|.-..++... ..||.|||+||||.+...... .....+-.+..+.+ +...+|++.... ..+++.+
T Consensus 314 i~~gDtL~~~~~~~--~~fD~Iv~NPPf~~~~~~~~~----~~~d~r~~~g~~~~-~~~~~~~~~~~~-----~~Fl~~~ 381 (544)
T 3khk_A 314 KKNADSFLDDQHPD--LRADFVMTNPPFNMKDWWHEK----LADDPRWTINTNGE-KRILTPPTGNAN-----FAWMLHM 381 (544)
T ss_dssp SSSCCTTTSCSCTT--CCEEEEEECCCSSCCSCCCGG----GTTCGGGEECCC---CEECCCCTTCTH-----HHHHHHH
T ss_pred EECCCHHCCCCCCC--CCCCEEEECCCCCCCCCCCHH----HHHHHHHHCCCCCC-CCCCCCCCCCHH-----HHHHHHH
T ss_conf 01164111752246--524679978996776666022----20004554076543-344668886043-----9999999
Q ss_pred HCCCCCCCEEEEEEEEC
Q ss_conf 50120697899997200
Q 028754 85 GRMLVMGGRLVYFYPVL 101 (204)
Q Consensus 85 a~lL~~gGRLvf~lP~~ 101 (204)
.++|++|||+++++|..
T Consensus 382 l~~Lk~gGr~aiVlP~g 398 (544)
T 3khk_A 382 LYHLAPTGSMALLLANG 398 (544)
T ss_dssp HHTEEEEEEEEEEEETH
T ss_pred HHHHCCCCEEEEEECCH
T ss_conf 99836586589996364
No 6
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=1.00 E-value=1 Score=57.02 Aligned_cols=112 Identities=12% Similarity=0.117 Sum_probs=58.5
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf 41008881899853332232587545567678987789986688898997676899999999985012069789999720
Q 028754 21 EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYPV 100 (204)
Q Consensus 21 ~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~Aa~lL~~gGRLvf~lP~ 100 (204)
+.||.|||+||||......... .+....... .. ... +...++..+++..++..|.++|++|||++|++|.
T Consensus 398 ~kFDVVIgNPPYg~~~~~~~e~-kd~~~r~~~--g~------p~~-p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 398 ANVSVVVMNPPYVSGVTDPAIK-RKFAHKIIQ--LT------GNR-PQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp TTEEEEEECCBCCSSCCCHHHH-HHHHHHHHH--HH------SSC-CSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred CCCCEEEECCCCCCCCCCHHHH-HHHHHHHHH--HC------CCC-CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECH
T ss_conf 7777899778755555651455-667887655--32------666-4223345406799999999966899689999782
Q ss_pred CCCC--C-----CCCCCCCCCCEEEEEEEE--EECCCC-EEEEEEEEEECCC
Q ss_conf 0588--7-----889888889906882799--834891-0499999997199
Q 028754 101 LRED--S-----TRNPFPEHPCFKLVASSE--QILSSR-YSRVLLTMVKIGP 142 (204)
Q Consensus 101 ~~de--~-----~e~~lp~h~gl~Li~~~~--Q~l~~k-~sR~Litm~K~~~ 142 (204)
..-. . +-..+..+..+..+.... ..+... ..=.++++.|...
T Consensus 468 s~Lf~sg~~~kkLRk~LLe~~~I~aIIdLP~~~~F~~asv~T~ILIlrK~k~ 519 (878)
T 3s1s_A 468 QYLTAQGNESKAFREFLVGNFGLEHIFLYPREGLFEEVIKDTVVFVGRKGSS 519 (878)
T ss_dssp HHHHCCSHHHHHHHHHHTTTTCEEEEEECCBCCSSCSCBCCEEEEEEETTCC
T ss_pred HHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCC
T ss_conf 8863687479999999985798389998998664678887589999986789
No 7
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=1.00 E-value=1 Score=56.83 Aligned_cols=123 Identities=24% Similarity=0.244 Sum_probs=66.4
Q ss_pred CCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 7536830899998899864100888189985333223258--75455676789877899866888989976768999999
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSG--GRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDL 80 (204)
Q Consensus 3 ~dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G--~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dL 80 (204)
+.++.+|+..... .+.||.|||+|||+........- ..+..+.... ...... ....+++..+
T Consensus 83 ~~~~~~D~~~~~~----~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-----~~~~~~~~~f 146 (421)
T 2ih2_A 83 AEGILADFLLWEP----GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYK-------KAFSTW-----KGKYNLYGAF 146 (421)
T ss_dssp EEEEESCGGGCCC----SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHH-------HHCTTC-----CTTCCHHHHH
T ss_pred CCEEECCHHHCCC----CCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHH-------HHHHCC-----CCCCCHHHHH
T ss_conf 8288677544675----57988899796956754444322224899999988-------763113-----6875689999
Q ss_pred HHHHHCCCCCCCEEEEEEEECC--CCCCC--CCCCCCCCEEEEEEEEEECCCC-EEEEEEEEEECC
Q ss_conf 9998501206978999972005--88788--9888889906882799834891-049999999719
Q 028754 81 LDLAGRMLVMGGRLVYFYPVLR--EDSTR--NPFPEHPCFKLVASSEQILSSR-YSRVLLTMVKIG 141 (204)
Q Consensus 81 L~~Aa~lL~~gGRLvf~lP~~~--de~~e--~~lp~h~gl~Li~~~~Q~l~~k-~sR~Litm~K~~ 141 (204)
++.+.++|++||+++|++|... ....+ .......++..+....+.+.+. ..+.|++++|..
T Consensus 147 l~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~~~i~~l~~~F~~~~~~~~il~~~k~~ 212 (421)
T 2ih2_A 147 LEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYYLGEVFPQKKVSAVVIRFQKSG 212 (421)
T ss_dssp HHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEEEEEEESCSTTCCCCEEEEEEESSS
T ss_pred HHHHHHHHCCCCEEEEEECHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEEECC
T ss_conf 999999848898899997858966754899999998467859998887788998508999999689
No 8
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=1.00 E-value=1 Score=55.81 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=59.3
Q ss_pred CCEEEEECCCCC--CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 753683089999--889986410088818998533322325875455676789877899866888989976768999999
Q 028754 3 IGLLRADNNLPP--WRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDL 80 (204)
Q Consensus 3 ~dil~~D~~~~p--~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dL 80 (204)
+.++.+|+...+ +.. +.||.|++||||.-....++ .+.-.+. ..+.....+.++...+
T Consensus 297 ~~~~~~D~~~~~~~~~~---~~fD~Vl~D~Pcsg~g~~~~----~p~~~~~-------------~~~~~~~~l~~~q~~~ 356 (429)
T 1sqg_A 297 ATVKQGDGRYPSQWCGE---QQFDRILLDAPCSATGVIRR----HPDIKWL-------------RRDRDIPELAQLQSEI 356 (429)
T ss_dssp CEEEECCTTCTHHHHTT---CCEEEEEEECCCCCGGGTTT----CTTHHHH-------------CCTTHHHHHHHHHHHH
T ss_pred EEEEECCHHHCHHHCCC---CCCCEEEEECCCCCCCCCCC----CCCHHHC-------------CCHHHHHHHHHHHHHH
T ss_conf 19996762225012156---88998998189874533678----8022011-------------8999999999999999
Q ss_pred HHHHHCCCCCCCEEEEEEEECC----CCCCCCCCCCCCCEEEEE
Q ss_conf 9998501206978999972005----887889888889906882
Q 028754 81 LDLAGRMLVMGGRLVYFYPVLR----EDSTRNPFPEHPCFKLVA 120 (204)
Q Consensus 81 L~~Aa~lL~~gGRLvf~lP~~~----de~~e~~lp~h~gl~Li~ 120 (204)
|..+.++|++||+|+|...+.. ++.+...+..|++|.++.
T Consensus 357 L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~~~~~~~ 400 (429)
T 1sqg_A 357 LDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCE 400 (429)
T ss_dssp HHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEECS
T ss_pred HHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 99999862989889999799995667999999998589979807
No 9
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=1.00 E-value=1 Score=54.65 Aligned_cols=102 Identities=20% Similarity=0.135 Sum_probs=58.7
Q ss_pred CCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 75368308999988998641008881899853332232587545567678987789986688898997676899999999
Q 028754 3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD 82 (204)
Q Consensus 3 ~dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~ 82 (204)
+.++.+|+...+......+.||.|++||||.--...++ ++...+ .....+.....+..+..++|.
T Consensus 155 v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r----~pd~~~-----------~~~~~~~~~~~l~~~Q~~iL~ 219 (309)
T 2b9e_A 155 CELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSR----QLEEPG-----------AGTPSPVRLHALAGFQQRALC 219 (309)
T ss_dssp EEEEECCGGGSCTTCGGGTTEEEEEECCCCCC---------------------------------CCHHHHHHHHHHHHH
T ss_pred EEEEECCHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC----CCCHHH-----------HCCCCHHHHHHHHHHHHHHHH
T ss_conf 99996885764711035677898998278588888766----788466-----------326999999999999999999
Q ss_pred HHHCCCCCCCEEEE----EEEECCCCCCCCCCCCCCC-EEEEE
Q ss_conf 98501206978999----9720058878898888899-06882
Q 028754 83 LAGRMLVMGGRLVY----FYPVLREDSTRNPFPEHPC-FKLVA 120 (204)
Q Consensus 83 ~Aa~lL~~gGRLvf----~lP~~~de~~e~~lp~h~g-l~Li~ 120 (204)
.|.++|+ ||+||| +.|..+++.++..+.+|++ |+++.
T Consensus 220 ~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~~~~~~~~~~ 261 (309)
T 2b9e_A 220 HALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAP 261 (309)
T ss_dssp HHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTTSTTTEEECC
T ss_pred HHHHCCC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9973117-98899979999968819999999985998579813
No 10
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=54.43 Aligned_cols=115 Identities=18% Similarity=0.147 Sum_probs=69.8
Q ss_pred CCEEEEECCC-CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 7536830899-998899864100888189985333223258754556767898778998668889899767689999999
Q 028754 3 IGLLRADNNL-PPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLL 81 (204)
Q Consensus 3 ~dil~~D~~~-~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL 81 (204)
+.++.+|+.. .++.. +.||.|+|||||......... .+.. ... .....+ +.+..+|
T Consensus 106 v~~~~~d~~~~~~~~~---~~fD~I~~npp~~~~~~~~~~---~~~~--------------~~~--~~~~~~-~~~~~~l 162 (230)
T 3evz_A 106 VRLVKSNGGIIKGVVE---GTFDVIFSAPPYYDKPLGRVL---TERE--------------AIG--GGKYGE-EFSVKLL 162 (230)
T ss_dssp CEEEECSSCSSTTTCC---SCEEEEEECCCCC----------------------------------CCSSSC-HHHHHHH
T ss_pred CEEEECCCHHHHHCCC---CCEEEEEECCCCCCCCCCCCC---CHHH--------------HHC--CCCCCH-HHHHHHH
T ss_conf 1899678155431436---864299989897677645446---8166--------------651--676646-9999999
Q ss_pred HHHHCCCCCCCEEEEEEEECCCCCCC-CCCCCCCCEEEEEEEEEECCCCEEEEEEEEEECCC
Q ss_conf 99850120697899997200588788-98888899068827998348910499999997199
Q 028754 82 DLAGRMLVMGGRLVYFYPVLREDSTR-NPFPEHPCFKLVASSEQILSSRYSRVLLTMVKIGP 142 (204)
Q Consensus 82 ~~Aa~lL~~gGRLvf~lP~~~de~~e-~~lp~h~gl~Li~~~~Q~l~~k~sR~Litm~K~~~ 142 (204)
..+.++|++||++++++|...+...+ .......||.+... +...+...++++.++|..+
T Consensus 163 ~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~--~~~~g~~~~~~l~f~~~~~ 222 (230)
T 3evz_A 163 EEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDI--KFKVGTRWRHSLIFFKGIS 222 (230)
T ss_dssp HHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE--EECCCC-CEEEEEEECCC-
T ss_pred HHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEE--EECCCCEEEEEEEEECCCC
T ss_conf 99999757986999996655748999999999769964898--8517974789999962566
Done!