Query         028754
Match_columns 204
No_of_seqs    167 out of 321
Neff          5.4 
Searched_HMMs 13730
Date          Tue Mar 26 18:12:01 2013
Command       hhsearch -i /local_scratch/syshi/lefta3m/028754.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2248-2252//hhsearch_scop/028754hhsearch_scop 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2f8la1 c.66.1.45 (A:2-329) Hy  98.1 1.5E-06 1.1E-10   54.1   4.9  114    4-142   174-294 (328)
  2 d2okca1 c.66.1.45 (A:9-433) Ty  98.0 1.2E-05 8.4E-10   49.1   7.2  112    5-142   231-350 (425)
  3 d2ar0a1 c.66.1.45 (A:6-529) M.  97.8   8E-06 5.8E-10   50.0   4.4   97   21-142   255-359 (524)
  4 d1eg2a_ c.66.1.11 (A:) m.RsrI   97.8 1.5E-05 1.1E-09   48.4   5.4   94   21-142    22-132 (279)
  5 d1g60a_ c.66.1.11 (A:) Methylt  97.7 1.4E-05   1E-09   48.6   4.5   95   21-142    22-127 (256)
  6 d1booa_ c.66.1.11 (A:) m.PvuII  97.5 4.3E-05 3.1E-09   45.9   4.4   67    5-99     15-83  (320)
  7 d2as0a2 c.66.1.51 (A:73-396) H  97.2 0.00013 9.1E-09   43.3   4.0   51   21-101   216-266 (324)
  8 d2b3ta1 c.66.1.30 (A:2-275) N5  97.1   8E-05 5.8E-09   44.4   2.2  109    3-135   160-271 (274)
  9 d1dusa_ c.66.1.4 (A:) Hypothet  97.1 0.00051 3.7E-08   39.8   5.7   57    3-101   104-160 (194)
 10 d1wxxa2 c.66.1.51 (A:65-382) H  97.1 0.00022 1.6E-08   41.8   3.8   49   20-98    213-261 (318)
 11 d2ih2a1 c.66.1.27 (A:21-243) D  97.0  0.0008 5.8E-08   38.7   5.9  123    5-142    65-193 (223)
 12 d2b78a2 c.66.1.51 (A:69-385) H  96.7  0.0011 7.8E-08   38.0   5.1   49   21-99    216-264 (317)
 13 d1nv8a_ c.66.1.30 (A:) N5-glut  96.6  0.0009 6.6E-08   38.4   3.9   89   21-140   178-269 (271)
 14 d1ws6a1 c.66.1.46 (A:15-185) M  96.4  0.0016 1.2E-07   37.0   4.4   40   21-99    109-148 (171)
 15 d2igta1 c.66.1.51 (A:1-309) Pu  96.4  0.0022 1.6E-07   36.2   4.8   50   21-99    203-252 (309)
 16 d2b9ea1 c.66.1.38 (A:133-425)   95.7  0.0021 1.5E-07   36.4   1.9   96    4-116   148-248 (293)
 17 d1yb2a1 c.66.1.13 (A:6-255) Hy  95.5  0.0014   1E-07   37.4   0.5   45   79-123   167-211 (250)
 18 d1o9ga_ c.66.1.29 (A:) rRNA me  95.2   0.011   8E-07   32.3   4.4   64    3-98    146-211 (249)
 19 d1sqga2 c.66.1.38 (A:145-428)   95.0  0.0066 4.8E-07   33.5   2.8   84   21-121   170-257 (284)
 20 d1ixka_ c.66.1.38 (A:) Hypothe  94.5  0.0049 3.5E-07   34.3   1.0   76    7-102   173-248 (313)
 21 d1ne2a_ c.66.1.32 (A:) Hypothe  94.3    0.01 7.4E-07   32.5   2.4   27    3-35     94-120 (197)
 22 d2b25a1 c.66.1.13 (A:6-329) Hy  94.2   0.021 1.5E-06   30.8   3.7   44   80-123   194-239 (324)
 23 d2o57a1 c.66.1.18 (A:16-297) P  94.1   0.053 3.8E-06   28.4   5.7   59    4-104   120-178 (282)
 24 d1i9ga_ c.66.1.13 (A:) Probabl  94.0   0.013 9.3E-07   31.9   2.3   53    4-103   153-205 (264)
 25 d1wy7a1 c.66.1.32 (A:4-204) Hy  93.3   0.018 1.3E-06   31.1   2.0   25    4-34     97-121 (201)
 26 d2fpoa1 c.66.1.46 (A:10-192) M  93.1    0.15 1.1E-05   25.8   6.6   72   20-140   109-181 (183)
 27 d1l3ia_ c.66.1.22 (A:) Precorr  92.7   0.025 1.8E-06   30.3   2.1   25   77-101   113-137 (186)
 28 d1ve3a1 c.66.1.43 (A:2-227) Hy  92.6    0.14 9.9E-06   26.1   5.8   59    3-101    86-144 (226)
 29 d1uira_ c.66.1.17 (A:) Spermid  91.8   0.098 7.2E-06   26.9   4.3   62    4-101   135-198 (312)
 30 d2fhpa1 c.66.1.46 (A:1-182) Pu  91.3   0.068   5E-06   27.8   3.0   41   21-99    112-152 (182)
 31 d2h00a1 c.66.1.54 (A:5-254) Me  90.9    0.18 1.3E-05   25.4   4.9  109   20-138   134-247 (250)
 32 d1y8ca_ c.66.1.43 (A:) Putativ  90.5    0.13 9.5E-06   26.2   3.9   25   77-101   121-145 (246)
 33 d2ifta1 c.66.1.46 (A:11-193) P  90.3    0.47 3.4E-05   23.1   6.9   56   20-121   113-170 (183)
 34 d1vl5a_ c.66.1.41 (A:) Hypothe  90.3    0.34 2.5E-05   23.9   5.8   57    3-101    65-121 (231)
 35 d1wzna1 c.66.1.43 (A:1-251) Hy  89.9    0.37 2.7E-05   23.7   5.7   59    2-100    89-147 (251)
 36 d1vlma_ c.66.1.41 (A:) Possibl  88.8    0.42   3E-05   23.4   5.3   57    3-101    75-131 (208)
 37 d2esra1 c.66.1.46 (A:28-179) P  88.5     0.1 7.5E-06   26.8   2.0   53    4-97     67-120 (152)
 38 d1inla_ c.66.1.17 (A:) Spermid  86.9   0.077 5.6E-06   27.5   0.6   62    4-101   146-207 (295)
 39 d1p91a_ c.66.1.33 (A:) rRNA me  86.6    0.48 3.5E-05   23.0   4.6   51    3-102   131-181 (268)
 40 d2i6ga1 c.66.1.44 (A:1-198) Pu  86.4    0.65 4.7E-05   22.3   5.1   25   77-101   113-137 (198)
 41 d1xxla_ c.66.1.41 (A:) Hypothe  86.3    0.81 5.9E-05   21.8   5.6   56    3-100    66-121 (234)
 42 d2fyta1 c.66.1.6 (A:238-548) P  85.5    0.61 4.5E-05   22.4   4.7   53    4-95     87-139 (311)
 43 d1ri5a_ c.66.1.34 (A:) mRNA ca  84.9       1 7.5E-05   21.2   5.8   26   75-100   111-136 (252)
 44 d1mjfa_ c.66.1.17 (A:) Putativ  83.8    0.54 3.9E-05   22.8   3.8   59    4-100   134-192 (276)
 45 d1oria_ c.66.1.6 (A:) Protein   83.6    0.94 6.9E-05   21.4   4.9   25   77-101   119-149 (316)
 46 d1zx0a1 c.66.1.16 (A:8-236) Gu  83.0    0.34 2.5E-05   23.9   2.5   25   77-101   142-166 (229)
 47 d2avna1 c.66.1.41 (A:1-246) Hy  82.5    0.65 4.8E-05   22.3   3.8   24   78-101   120-143 (246)
 48 d1iy9a_ c.66.1.17 (A:) Spermid  79.5    0.36 2.6E-05   23.7   1.6   61    4-101   132-192 (274)
 49 d1xdza_ c.66.1.20 (A:) Glucose  79.0    0.58 4.2E-05   22.6   2.5   66   77-142   153-221 (239)
 50 d2frna1 c.66.1.47 (A:19-278) H  78.6    0.71 5.2E-05   22.1   2.9   46    4-96    160-205 (260)
 51 d1xj5a_ c.66.1.17 (A:) Spermid  77.8     1.4  0.0001   20.4   4.2   46   21-101   153-198 (290)
 52 d2ex4a1 c.66.1.42 (A:2-224) Ad  76.9     1.7 0.00012   20.0   4.4   28   76-103   144-171 (222)
 53 d1o54a_ c.66.1.13 (A:) Hypothe  76.3    0.44 3.2E-05   23.3   1.3   45   79-123   185-229 (266)
 54 d1kpia_ c.66.1.18 (A:) CmaA2 {  75.6     1.1 7.9E-05   21.0   3.2   33   64-96    138-170 (291)
 55 d2gh1a1 c.66.1.49 (A:13-293) M  75.6     2.1 0.00015   19.5   4.6   24   77-100   110-133 (281)
 56 d1jsxa_ c.66.1.20 (A:) Glucose  75.5     2.2 0.00016   19.3   5.2   62   77-141   144-206 (207)
 57 d2o07a1 c.66.1.17 (A:16-300) S  75.3     0.9 6.5E-05   21.5   2.7   61    4-101   135-195 (285)
 58 d2b2ca1 c.66.1.17 (A:3-314) Sp  73.4     1.2 8.7E-05   20.8   2.9   47   20-101   177-223 (312)
 59 d1m6ya2 c.66.1.23 (A:2-114,A:2  70.1     1.8 0.00013   19.8   3.2   27   75-101   118-144 (192)
 60 d1g6q1_ c.66.1.6 (1:) Arginine  68.5     3.2 0.00023   18.4   4.8   26   77-102   124-155 (328)
 61 d1xtpa_ c.66.1.42 (A:) Hypothe  66.6     3.2 0.00023   18.4   3.9   26   77-102   176-201 (254)
 62 d2nxca1 c.66.1.39 (A:1-254) Pr  61.3    0.79 5.7E-05   21.8  -0.0   60   73-139   193-254 (254)
 63 d1g8aa_ c.66.1.3 (A:) Fibrilla  60.6     4.6 0.00033   17.5   4.5   23   77-99    157-179 (227)
 64 d1ej0a_ c.66.1.2 (A:) RNA meth  57.7       3 0.00022   18.5   2.4   29   70-98    108-136 (180)
 65 d2g72a1 c.66.1.15 (A:18-280) P  57.6     3.4 0.00025   18.2   2.7   26   76-101   176-201 (263)
 66 d1i1na_ c.66.1.7 (A:) Protein-  57.4     1.1 8.1E-05   21.0   0.2   14   85-98    168-181 (224)
 67 d1kpga_ c.66.1.18 (A:) CmaA1 {  56.2     3.6 0.00026   18.1   2.6   21   77-97    145-165 (285)
 68 d2p41a1 c.66.1.25 (A:8-264) An  52.6     6.3 0.00046   16.7   3.8   20   77-96    154-173 (257)
 69 d2fk8a1 c.66.1.18 (A:22-301) M  51.6     4.8 0.00035   17.4   2.6   22   77-98    135-156 (280)
 70 d1nkva_ c.66.1.21 (A:) Hypothe  51.4     4.8 0.00035   17.4   2.6   28   77-104   116-143 (245)
 71 d2bzga1 c.66.1.36 (A:17-245) T  51.0     6.7 0.00048   16.6   3.9   28   75-102   145-172 (229)
 72 d2dula1 c.66.1.58 (A:3-377) N(  48.4     5.1 0.00037   17.3   2.4   32   64-95    182-213 (375)
 73 d1xvaa_ c.66.1.5 (A:) Glycine   45.9     5.8 0.00042   16.9   2.3   23   77-99    153-175 (292)
 74 d2fcaa1 c.66.1.53 (A:10-213) t  44.9     6.6 0.00048   16.6   2.5   21   77-97    123-143 (204)
 75 d1nt2a_ c.66.1.3 (A:) Fibrilla  44.8     8.4 0.00061   16.0   4.5   18   80-97    142-159 (209)
 76 d2a14a1 c.66.1.15 (A:5-261) In  44.6     6.9  0.0005   16.5   2.6   28   75-102   170-197 (257)
 77 d1dl5a1 c.66.1.7 (A:1-213) Pro  42.6     1.9 0.00014   19.7  -0.6   13   85-97    162-174 (213)
 78 d1tw3a2 c.66.1.12 (A:99-351) C  40.3     9.9 0.00072   15.6   5.4   24   75-98    162-185 (253)
 79 d1jqea_ c.66.1.19 (A:) Histami  34.7      11 0.00081   15.3   2.3   25   77-101   139-163 (280)
 80 d1yzha1 c.66.1.53 (A:8-211) tR  33.8     7.7 0.00056   16.2   1.4   22   76-97    124-145 (204)
 81 d2p7ia1 c.66.1.41 (A:22-246) H  24.7      18  0.0013   14.1   2.3   23   79-101    99-122 (225)
 82 d1yuba_ c.66.1.24 (A:) rRNA ad  23.3      20  0.0014   13.9   2.1   33    3-38     77-109 (245)
 83 d1u2za_ c.66.1.31 (A:) Catalyt  22.4      20  0.0015   13.8   2.8   24   74-97    309-332 (406)
 84 d1im8a_ c.66.1.14 (A:) Hypothe  20.4      23  0.0016   13.6   2.6   24   77-100   126-149 (225)

No 1  
>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}
Probab=98.11  E-value=1.5e-06  Score=54.09  Aligned_cols=114  Identities=16%  Similarity=0.130  Sum_probs=61.7

Q ss_pred             CEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             53683089999889986410088818998533322325875455676789877899866888989976768999999999
Q 028754            4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDL   83 (204)
Q Consensus         4 dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~   83 (204)
                      .+...|.....+.    ..||.|||+||||...........                     .-...+....++.-+++.
T Consensus       174 ~~~~~d~~~~~~~----~~fD~vi~NPPy~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~Fi~~  228 (328)
T d2f8la1         174 TLLHQDGLANLLV----DPVDVVISDLPVGYYPDDENAKTF---------------------ELCREEGHSFAHFLFIEQ  228 (328)
T ss_dssp             EEEESCTTSCCCC----CCEEEEEEECCCSEESCHHHHTTS---------------------TTCCSSSCEEHHHHHHHH
T ss_pred             HHHCCCCCCCCCC----CCCCCCCCCCCCCCCCCCHHHHHC---------------------CHHCCCCCCHHHHHHHHH
T ss_conf             4420243334220----002333457987777530122200---------------------011035744699999999


Q ss_pred             HHCCCCCCCEEEEEEEECC--CCCCC---CCCCCCCCEEEEEEE-EEECCCC-EEEEEEEEEECCC
Q ss_conf             8501206978999972005--88788---988888990688279-9834891-0499999997199
Q 028754           84 AGRMLVMGGRLVYFYPVLR--EDSTR---NPFPEHPCFKLVASS-EQILSSR-YSRVLLTMVKIGP  142 (204)
Q Consensus        84 Aa~lL~~gGRLvf~lP~~~--de~~e---~~lp~h~gl~Li~~~-~Q~l~~k-~sR~Litm~K~~~  142 (204)
                      +.++|++||++++++|...  +...+   ..+..+..+.-+-.. ...+... ..-.+++++|...
T Consensus       229 ~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii~lp~~~F~~~~~~t~ilvl~K~~~  294 (328)
T d2f8la1         229 GMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKLPETLFKSEQARKSILILEKADV  294 (328)
T ss_dssp             HHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEECCGGGSCC-CCCEEEEEEEECCT
T ss_pred             HHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCC
T ss_conf             998468988569992572013853689999998579189999788466689999769999988898


No 2  
>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=97.97  E-value=1.2e-05  Score=49.10  Aligned_cols=112  Identities=19%  Similarity=0.232  Sum_probs=59.5

Q ss_pred             EEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             36830899998899864100888189985333223258754556767898778998668889899767689999999998
Q 028754            5 LLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLA   84 (204)
Q Consensus         5 il~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~A   84 (204)
                      +...|......    ...||.|||+||||.+.......                 .+..+.+++.     ....-+++.+
T Consensus       231 i~~~d~l~~~~----~~~fD~Ii~NPPfg~~~~~~~~~-----------------~~~~~~~~~~-----~~~~~Fi~~~  284 (425)
T d2okca1         231 IVCEDSLEKEP----STLVDVILANPPFGTRPAGSVDI-----------------NRPDFYVETK-----NNQLNFLQHM  284 (425)
T ss_dssp             EEECCTTTSCC----SSCEEEEEECCCSSCCCTTCCCC-----------------CCTTSSSCCS-----CHHHHHHHHH
T ss_pred             EECCCHHHHHC----CCCCCEEEECCCCCCCCCCCCHH-----------------HHHHCCCCCC-----CHHHHHHHHH
T ss_conf             42375044311----23445278338878776663202-----------------1232046666-----2788999999


Q ss_pred             HCCCCCCCEEEEEEEEC---CCCCC-C--CCCCCCCCEEEEEEE-EEECCCC-EEEEEEEEEECCC
Q ss_conf             50120697899997200---58878-8--988888990688279-9834891-0499999997199
Q 028754           85 GRMLVMGGRLVYFYPVL---REDST-R--NPFPEHPCFKLVASS-EQILSSR-YSRVLLTMVKIGP  142 (204)
Q Consensus        85 a~lL~~gGRLvf~lP~~---~de~~-e--~~lp~h~gl~Li~~~-~Q~l~~k-~sR~Litm~K~~~  142 (204)
                      ..+|++|||+++++|..   .+... .  ..+..+..+.-|-.. ...|... ..-.++.++|.++
T Consensus       285 ~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~~~~i~aIi~LP~~~F~~t~v~t~Ilil~K~k~  350 (425)
T d2okca1         285 MLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQP  350 (425)
T ss_dssp             HHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHHEEEEEEEECCSSSSSSTTCCEEEEEEEESSC
T ss_pred             HHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCEEEEEEECCCC
T ss_conf             996589981899942488654345789999999836356765187222037899769999988999


No 3  
>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}
Probab=97.83  E-value=8e-06  Score=50.00  Aligned_cols=97  Identities=14%  Similarity=0.115  Sum_probs=53.6

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf             41008881899853332232587545567678987789986688898997676899999999985012069789999720
Q 028754           21 EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYPV  100 (204)
Q Consensus        21 ~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~Aa~lL~~gGRLvf~lP~  100 (204)
                      ..||.|||+||||.......                    ...+.+++..     ...-+++.+.+.|++|||+++++|.
T Consensus       255 ~kfD~Ii~NPPfg~~~~~~~--------------------~~~~~~~~~~-----~~~~Fi~~~l~~Lk~gGr~aiIlP~  309 (524)
T d2ar0a1         255 PKAHIVATNPPFGSAAGTNI--------------------TRTFVHPTSN-----KQLCFMQHIIETLHPGGRAAVVVPD  309 (524)
T ss_dssp             CCEEEEEECCCCTTCSSCCC--------------------CSCCSSCCSC-----HHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             CCCEEEEECCCCCCCCCCCC--------------------HHHHCCCCCC-----CCHHHHHHHHHHCCCCCCEEEEEEH
T ss_conf             33404774699665556542--------------------0111001466-----1279999999864566758999734


Q ss_pred             CC---CCCCC---CCCCCCCCEEEEEEE-EEECCC-CEEEEEEEEEECCC
Q ss_conf             05---88788---988888990688279-983489-10499999997199
Q 028754          101 LR---EDSTR---NPFPEHPCFKLVASS-EQILSS-RYSRVLLTMVKIGP  142 (204)
Q Consensus       101 ~~---de~~e---~~lp~h~gl~Li~~~-~Q~l~~-k~sR~Litm~K~~~  142 (204)
                      ..   +....   ..+.++..+..|-.. .+.|.. ...=.++.++|.++
T Consensus       310 ~~Lf~~~~~~~iR~~Ll~~~~i~aII~LP~~~F~~t~i~t~Il~l~K~k~  359 (524)
T d2ar0a1         310 NVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV  359 (524)
T ss_dssp             HHHHCCTHHHHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEBCS
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEEECCCC
T ss_conf             87654024479999999829852899899976778998758999988987


No 4  
>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=97.80  E-value=1.5e-05  Score=48.44  Aligned_cols=94  Identities=16%  Similarity=0.164  Sum_probs=53.4

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf             41008881899853332232587545567678987789986688898997676899999999985012069789999720
Q 028754           21 EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYPV  100 (204)
Q Consensus        21 ~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~Aa~lL~~gGRLvf~lP~  100 (204)
                      ++||.|+|||||++.-+-       ..                     ...+..+.+...+..+.++|+++|.++++.-.
T Consensus        22 ~SIDliitDPPYn~~~~~-------~~---------------------~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~   73 (279)
T d1eg2a_          22 DSVQLIICDPPYNIMLAD-------WD---------------------DHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL   73 (279)
T ss_dssp             TCEEEEEECCCSBCCGGG-------GG---------------------TCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             CCCCEEEECCCCCCCCCC-------CC---------------------CHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             871479988999987665-------56---------------------77789999999999999973888618996476


Q ss_pred             CCCCCCCC--------CCCCCCCEEEEEEEEEECCC---------CEEEEEEEEEECCC
Q ss_conf             05887889--------88888990688279983489---------10499999997199
Q 028754          101 LREDSTRN--------PFPEHPCFKLVASSEQILSS---------RYSRVLLTMVKIGP  142 (204)
Q Consensus       101 ~~de~~e~--------~lp~h~gl~Li~~~~Q~l~~---------k~sR~Litm~K~~~  142 (204)
                      ........        .+....+|.+..........         .-...++.+.|...
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~e~i~~~~k~~~  132 (279)
T d1eg2a_          74 QYQGEAGSGDLISIISHMRQNSKMLLANLIIWNYPNGMSAQRFFANRHEEIAWFAKTKK  132 (279)
T ss_dssp             CCCCCTTBCCHHHHHHHHHHHCCCEEEEEEEEECSCCCCCSSSCCCCEEEEEEEESSTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             42002332212567899975047605443211123543322323433332100135677


No 5  
>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}
Probab=97.75  E-value=1.4e-05  Score=48.65  Aligned_cols=95  Identities=13%  Similarity=0.024  Sum_probs=52.4

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEE-E
Q ss_conf             410088818998533322325875455676789877899866888989976768999999999850120697899997-2
Q 028754           21 EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFY-P   99 (204)
Q Consensus        21 ~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~Aa~lL~~gGRLvf~l-P   99 (204)
                      ++||.|||||||++...-.     +.              ..+      .-+..+.+...+..+.++|+++|.++++. |
T Consensus        22 ~sVdliitdPPY~~~~~~~-----d~--------------~~~------~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~   76 (256)
T d1g60a_          22 KSVQLAVIDPPYNLSKADW-----DS--------------FDS------HNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP   76 (256)
T ss_dssp             TCEEEEEECCCCSSCSSGG-----GC--------------CSS------HHHHHHHHHHHHHHHHHHEEEEEEEEEEECH
T ss_pred             CCCCEEEECCCCCCCCCCC-----CC--------------CCC------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             8718799898997876757-----67--------------789------9999999999999840001457654422374


Q ss_pred             ECCCCCCCCCCCCCCCEEEEEEEEEECC-------C---CEEEEEEEEEECCC
Q ss_conf             0058878898888899068827998348-------9---10499999997199
Q 028754          100 VLREDSTRNPFPEHPCFKLVASSEQILS-------S---RYSRVLLTMVKIGP  142 (204)
Q Consensus       100 ~~~de~~e~~lp~h~gl~Li~~~~Q~l~-------~---k~sR~Litm~K~~~  142 (204)
                      .......  ......+|.+.....-...       .   ...-.++.+.|...
T Consensus        77 ~~~~~~~--~~~~~~g~~~~~~iiW~k~~~~~~~~~~~~~~~e~i~~~~k~~~  127 (256)
T d1g60a_          77 FNCAFIC--QYLVSKGMIFQNWITWDKRDGMGSAKRRFSTGQETILFFSKSKN  127 (256)
T ss_dssp             HHHHHHH--HHHHHTTCEEEEEEEECCCCSCCCCSSSCBCCCEEEEEEESSTT
T ss_pred             HHHHHHH--HHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCC
T ss_conf             1235566--65412452122236763012233333446653010000245751


No 6  
>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}
Probab=97.52  E-value=4.3e-05  Score=45.91  Aligned_cols=67  Identities=12%  Similarity=0.237  Sum_probs=41.8

Q ss_pred             EEEEECCC--CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             36830899--9988998641008881899853332232587545567678987789986688898997676899999999
Q 028754            5 LLRADNNL--PPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD   82 (204)
Q Consensus         5 il~~D~~~--~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~   82 (204)
                      |+.+|+..  ..+..   +.||.|||||||++-..-.        ..           ..+      ..+..+.+...+.
T Consensus        15 l~~GD~le~l~~l~~---~sVdli~tDPPY~~~~~~~--------~~-----------~~~------~~~y~~~~~~~l~   66 (320)
T d1booa_          15 MYIGDSLELLESFPE---ESISLVMTSPPFALQRKKE--------YG-----------NLE------QHEYVDWFLSFAK   66 (320)
T ss_dssp             EEESCHHHHGGGSCS---SCEEEEEECCCCSSSCSCS--------SC-----------SCH------HHHHHHHHHHHHH
T ss_pred             EEEHHHHHHHHHCCC---CCCCEEEECCCCCCCCCCC--------CC-----------CCC------HHHHHHHHHHHHH
T ss_conf             996018999850705---8988899899985777777--------89-----------999------9999999999999


Q ss_pred             HHHCCCCCCCEEEEEEE
Q ss_conf             98501206978999972
Q 028754           83 LAGRMLVMGGRLVYFYP   99 (204)
Q Consensus        83 ~Aa~lL~~gGRLvf~lP   99 (204)
                      .+.++|+++|.+++...
T Consensus        67 ~~~rvLk~~G~i~i~~~   83 (320)
T d1booa_          67 VVNKKLKPDGSFVVDFG   83 (320)
T ss_dssp             HHHHHEEEEEEEEEEEC
T ss_pred             HHHHHCCCCCCCCCCCC
T ss_conf             99973854686112453


No 7  
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=97.24  E-value=0.00013  Score=43.26  Aligned_cols=51  Identities=22%  Similarity=0.137  Sum_probs=37.9

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf             41008881899853332232587545567678987789986688898997676899999999985012069789999720
Q 028754           21 EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYPV  100 (204)
Q Consensus        21 ~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~Aa~lL~~gGRLvf~lP~  100 (204)
                      +.||.||+|||+-.+....                              .......+.+|+..|.++|++||+|++..-+
T Consensus       216 ~~fD~Vi~DpP~~~~~~~~------------------------------~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         216 EKFDIVVLDPPAFVQHEKD------------------------------LKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             CCEEEEEECCCCSCSSGGG------------------------------HHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             CCCCCHHCCCCCCCCCHHH------------------------------HHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             7998120177212478878------------------------------9999999999999999971899589999588


Q ss_pred             C
Q ss_conf             0
Q 028754          101 L  101 (204)
Q Consensus       101 ~  101 (204)
                      .
T Consensus       266 ~  266 (324)
T d2as0a2         266 Q  266 (324)
T ss_dssp             T
T ss_pred             C
T ss_conf             5


No 8  
>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}
Probab=97.14  E-value=8e-05  Score=44.36  Aligned_cols=109  Identities=19%  Similarity=0.167  Sum_probs=63.6

Q ss_pred             CCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHH
Q ss_conf             7536830899998899864100888189985333223258754556767898778998668889899767---6899999
Q 028754            3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYC---LSECVHD   79 (204)
Q Consensus         3 ~dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~---l~~l~~d   79 (204)
                      +.++.+|... ++..   +.||-|||+|||=-.+-....      .           ....|-|..+-+.   -.+.+..
T Consensus       160 v~~~~~d~~~-~~~~---~~fDlIvsNPPYi~~~~~~~~------~-----------~v~~~eP~~AL~~g~dGl~~~~~  218 (274)
T d2b3ta1         160 IHILQSDWFS-ALAG---QQFAMIVSNPPYIDEQDPHLQ------Q-----------GDVRFEPLTALVAADSGMADIVH  218 (274)
T ss_dssp             EEEECCSTTG-GGTT---CCEEEEEECCCCBCTTCHHHH------S-----------SGGGSSCSTTTBCHHHHTHHHHH
T ss_pred             CEEEECCCCC-CCCC---CCEEEEEECCHHHHHHHHCCC------C-----------CCCCCCHHHHCCCCCCCCHHHHH
T ss_conf             3566346543-4689---852489961112113331135------5-----------30145303203566565047889


Q ss_pred             HHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEE
Q ss_conf             99998501206978999972005887889888889906882799834891049999
Q 028754           80 LLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASSEQILSSRYSRVLL  135 (204)
Q Consensus        80 LL~~Aa~lL~~gGRLvf~lP~~~de~~e~~lp~h~gl~Li~~~~Q~l~~k~sR~Li  135 (204)
                      ++..|.++|++||.+.|-......+.+ ..+....||..+ ...+.+++ ..|.++
T Consensus       219 i~~~a~~~L~~~G~l~lEig~~q~~~v-~~~l~~~gf~~i-~~~kDl~g-~~R~v~  271 (274)
T d2b3ta1         219 IIEQSRNALVSGGFLLLEHGWQQGEAV-RQAFILAGYHDV-ETCRDYGD-NERVTL  271 (274)
T ss_dssp             HHHHHGGGEEEEEEEEEECCSSCHHHH-HHHHHHTTCTTC-CEEECTTS-SEEEEE
T ss_pred             HHHHHHHHCCCCCEEEEEECCHHHHHH-HHHHHHCCCCEE-EEEECCCC-CCEEEE
T ss_conf             999999864789889999891499999-999997799727-99988899-966999


No 9  
>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=97.07  E-value=0.00051  Score=39.81  Aligned_cols=57  Identities=18%  Similarity=0.300  Sum_probs=40.8

Q ss_pred             CCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             75368308999988998641008881899853332232587545567678987789986688898997676899999999
Q 028754            3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD   82 (204)
Q Consensus         3 ~dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~   82 (204)
                      +.++.+|... ++..   +.||.|+|||||-.                                      ..+....+++
T Consensus       104 i~~~~~d~~~-~~~~---~~fD~Ii~~~p~~~--------------------------------------~~~~~~~~l~  141 (194)
T d1dusa_         104 IRVVHSDLYE-NVKD---RKYNKIITNPPIRA--------------------------------------GKEVLHRIIE  141 (194)
T ss_dssp             EEEEECSTTT-TCTT---SCEEEEEECCCSTT--------------------------------------CHHHHHHHHH
T ss_pred             EEEEECCHHH-HHCC---CCCEEEEECCCEEE--------------------------------------CCHHHHHHHH
T ss_conf             8999712455-3136---77529998664786--------------------------------------1213466899


Q ss_pred             HHHCCCCCCCEEEEEEEEC
Q ss_conf             9850120697899997200
Q 028754           83 LAGRMLVMGGRLVYFYPVL  101 (204)
Q Consensus        83 ~Aa~lL~~gGRLvf~lP~~  101 (204)
                      .+.++|++||+|.++....
T Consensus       142 ~~~~~LkpgG~l~i~~~~~  160 (194)
T d1dusa_         142 EGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             HHHHHEEEEEEEEEEEEST
T ss_pred             HHHHHCCCCCEEEEEEECC
T ss_conf             9998508684999999676


No 10 
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}
Probab=97.06  E-value=0.00022  Score=41.84  Aligned_cols=49  Identities=22%  Similarity=0.188  Sum_probs=35.9

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf             6410088818998533322325875455676789877899866888989976768999999999850120697899997
Q 028754           20 KEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFY   98 (204)
Q Consensus        20 ~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~Aa~lL~~gGRLvf~l   98 (204)
                      .+.||.||+|||+-......                              .......+.+|+..|.++|++||.|++..
T Consensus       213 ~~~fD~Vi~DpP~~~~~~~~------------------------------~~~~~~~~~~l~~~a~~lLkpGG~Lv~~s  261 (318)
T d1wxxa2         213 GERFDLVVLDPPAFAKGKKD------------------------------VERAYRAYKEVNLRAIKLLKEGGILATAS  261 (318)
T ss_dssp             TCCEEEEEECCCCSCCSTTS------------------------------HHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             HCCCCEEEECCCCCCCCHHH------------------------------HHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             06898899847865666478------------------------------99999999999999997768898899996


No 11 
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=96.96  E-value=0.0008  Score=38.72  Aligned_cols=123  Identities=23%  Similarity=0.194  Sum_probs=59.8

Q ss_pred             EEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             36830899998899864100888189985333223258754556767898778998668889899767689999999998
Q 028754            5 LLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLA   84 (204)
Q Consensus         5 il~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~A   84 (204)
                      ++.+|.....+.    ..||.||++|||+.......  ..........      .......+..  -...+++..++..|
T Consensus        65 ~~~~~~~~~~~~----~~fd~ii~npP~~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~Fi~~a  130 (223)
T d2ih2a1          65 GILADFLLWEPG----EAFDLILGNPPYGIVGEASK--YPIHVFKAVK------DLYKKAFSTW--KGKYNLYGAFLEKA  130 (223)
T ss_dssp             EEESCGGGCCCS----SCEEEEEECCCCCCBSCTTT--CSBCCCHHHH------HHHHHHCTTC--CTTCCHHHHHHHHH
T ss_pred             EEEEEHHCCCCC----CCCCEECCCCCCCCCCCCCC--CCCHHHHHHH------HHHHHCCCCC--CCCCHHHHHHHHHH
T ss_conf             553201033433----23001024686433455433--5300123321------0011014557--88605799999999


Q ss_pred             HCCCCCCCEEEEEEEECCCCCCC-----CCCCCCCCEEEEEEEEEECCC-CEEEEEEEEEECCC
Q ss_conf             50120697899997200588788-----988888990688279983489-10499999997199
Q 028754           85 GRMLVMGGRLVYFYPVLREDSTR-----NPFPEHPCFKLVASSEQILSS-RYSRVLLTMVKIGP  142 (204)
Q Consensus        85 a~lL~~gGRLvf~lP~~~de~~e-----~~lp~h~gl~Li~~~~Q~l~~-k~sR~Litm~K~~~  142 (204)
                      .++|++||+++|++|...-....     ..+.++..+. +..-...+.+ ...=.+++++|...
T Consensus       131 l~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~~~~~i~-i~~~~~~F~~~~v~t~i~~~~k~~~  193 (223)
T d2ih2a1         131 VRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTS-VYYLGEVFPQKKVSAVVIRFQKSGK  193 (223)
T ss_dssp             HHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEE-EEEEESCSTTCCCCEEEEEEESSSC
T ss_pred             HHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEE-EECCHHCCCCCCCCEEEEEEEECCC
T ss_conf             98402688669998410204752489999998669999-9861222899997489999993999


No 12 
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}
Probab=96.74  E-value=0.0011  Score=38.00  Aligned_cols=49  Identities=24%  Similarity=0.354  Sum_probs=35.5

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf             4100888189985333223258754556767898778998668889899767689999999998501206978999972
Q 028754           21 EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYP   99 (204)
Q Consensus        21 ~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~Aa~lL~~gGRLvf~lP   99 (204)
                      +.||.||+|||.=.+.  +                            +.......-|.+|+..|.++|++||.|++..=
T Consensus       216 ~~fD~Ii~DPP~f~~~--~----------------------------~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         216 LTYDIIIIDPPSFARN--K----------------------------KEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             CCEEEEEECCCCC-----------------------------------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCCEEEECCHHHCCC--H----------------------------HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             7777799747231343--1----------------------------57899998999999999997299988999948


No 13 
>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}
Probab=96.60  E-value=0.0009  Score=38.42  Aligned_cols=89  Identities=18%  Similarity=0.234  Sum_probs=47.4

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             4100888189985333223258754556767898778998668889899767---6899999999985012069789999
Q 028754           21 EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYC---LSECVHDLLDLAGRMLVMGGRLVYF   97 (204)
Q Consensus        21 ~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~---l~~l~~dLL~~Aa~lL~~gGRLvf~   97 (204)
                      +.||-|||+|||=- +...       ..         .+  ..|-|..+-++   =.+.+..+   +.++|++||.++|=
T Consensus       178 ~~fDlIVsNPPYI~-~~~~-------l~---------~~--~~~EP~~AL~gg~dGl~~~r~i---~~~~L~~~G~l~~E  235 (271)
T d1nv8a_         178 ASIEMILSNPPYVK-SSAH-------LP---------KD--VLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIVLME  235 (271)
T ss_dssp             TTCCEEEECCCCBC-GGGS-------CT---------TS--CCCSCHHHHBCTTTSCHHHHHH---HHHCCCTTCEEEEE
T ss_pred             CCCCEEEECCCCCC-CCCC-------CC---------EE--EEECCCCCCCCCCCHHHHHHHH---HHHHCCCCCEEEEE
T ss_conf             76238997244457-4333-------33---------03--5512453333452209999999---99955799999999


Q ss_pred             EEECCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEC
Q ss_conf             7200588788988888990688279983489104999999971
Q 028754           98 YPVLREDSTRNPFPEHPCFKLVASSEQILSSRYSRVLLTMVKI  140 (204)
Q Consensus        98 lP~~~de~~e~~lp~h~gl~Li~~~~Q~l~~k~sR~Litm~K~  140 (204)
                      ....-.+.+ ..+....+|      .+.++++ -|.++ ++|.
T Consensus       236 ig~~Q~~~v-~~l~~~~g~------~kDl~g~-~R~~~-~~k~  269 (271)
T d1nv8a_         236 IGEDQVEEL-KKIVSDTVF------LKDSAGK-YRFLL-LNRR  269 (271)
T ss_dssp             CCTTCHHHH-TTTSTTCEE------EECTTSS-EEEEE-EECC
T ss_pred             ECHHHHHHH-HHHHHHCCE------EECCCCC-CEEEE-EEEC
T ss_conf             797799999-999985898------8566999-58999-9975


No 14 
>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}
Probab=96.44  E-value=0.0016  Score=36.97  Aligned_cols=40  Identities=30%  Similarity=0.532  Sum_probs=27.9

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf             4100888189985333223258754556767898778998668889899767689999999998501206978999972
Q 028754           21 EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYP   99 (204)
Q Consensus        21 ~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~Aa~lL~~gGRLvf~lP   99 (204)
                      +.||.|++||||+..                                     +.+++..+++  ..+|++||.+++-.+
T Consensus       109 ~~fD~If~DPPY~~~-------------------------------------~~~~l~~l~~--~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         109 ERFTVAFMAPPYAMD-------------------------------------LAALFGELLA--SGLVEAGGLYVLQHP  148 (171)
T ss_dssp             CCEEEEEECCCTTSC-------------------------------------TTHHHHHHHH--HTCEEEEEEEEEEEE
T ss_pred             CCCCEEEECCCCCCC-------------------------------------HHHHHHHHHH--CCCCCCCEEEEEEEC
T ss_conf             763305873655568-------------------------------------8999999998--098487969999926


No 15 
>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=96.38  E-value=0.0022  Score=36.20  Aligned_cols=50  Identities=20%  Similarity=0.248  Sum_probs=34.6

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf             4100888189985333223258754556767898778998668889899767689999999998501206978999972
Q 028754           21 EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYP   99 (204)
Q Consensus        21 ~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~Aa~lL~~gGRLvf~lP   99 (204)
                      ..||.||+|||+=.+....                             ....+.+-+..|+..|.++|.+||.+++..-
T Consensus       203 ~~fD~IilDPP~f~~~~~~-----------------------------~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         203 STYDIILTDPPKFGRGTHG-----------------------------EVWQLFDHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             CCBSEEEECCCSEEECTTC-----------------------------CEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             CCCCEEEECCCCCCCCCCC-----------------------------HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             9988899789854556531-----------------------------3678999999999999974678997899962


No 16 
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.65  E-value=0.0021  Score=36.39  Aligned_cols=96  Identities=18%  Similarity=0.070  Sum_probs=48.9

Q ss_pred             CEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHH
Q ss_conf             53683089999889986410088818998533322325875455676789877899866888989-97676899999999
Q 028754            4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPST-APYCLSECVHDLLD   82 (204)
Q Consensus         4 dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~-~~y~l~~l~~dLL~   82 (204)
                      .+...|+..........+.||.|+.|||=---...++    ++..            +....+.. ....+..+-..+|.
T Consensus       148 ~~~~~d~~~~~~~~~~~~~fD~VL~DaPCSg~G~~~r----~p~~------------~~~~~~~~~~~~~l~~~Q~~il~  211 (293)
T d2b9ea1         148 ELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSR----QLEE------------PGAGTPSPVRLHALAGFQQRALC  211 (293)
T ss_dssp             EEEECCGGGSCTTCGGGTTEEEEEECCCCCC----------------------------------CCHHHHHHHHHHHHH
T ss_pred             EEEEHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHCC----CCHH------------HCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             6560115551302332312118962586231012114----6112------------01377414668787666677677


Q ss_pred             HHHCCCCCCCEEEEEEEECCCCCCC----CCCCCCCCE
Q ss_conf             9850120697899997200588788----988888990
Q 028754           83 LAGRMLVMGGRLVYFYPVLREDSTR----NPFPEHPCF  116 (204)
Q Consensus        83 ~Aa~lL~~gGRLvf~lP~~~de~~e----~~lp~h~gl  116 (204)
                      .|. .|++||+|||..=+...+..|    .-+-.|++.
T Consensus       212 ~a~-~l~~gG~lvYsTCSl~~~ENe~vV~~~L~~~~~~  248 (293)
T d2b9ea1         212 HAL-TFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGA  248 (293)
T ss_dssp             HHT-TCTTCCEEEEEESCCCGGGTHHHHHHHHTTSTTT
T ss_pred             HHH-HCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf             764-1565537888623688667099999999869997


No 17 
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=95.49  E-value=0.0014  Score=37.38  Aligned_cols=45  Identities=9%  Similarity=0.159  Sum_probs=29.5

Q ss_pred             HHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf             999998501206978999972005887889888889906882799
Q 028754           79 DLLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASSE  123 (204)
Q Consensus        79 dLL~~Aa~lL~~gGRLvf~lP~~~de~~e~~lp~h~gl~Li~~~~  123 (204)
                      ..|..+.+.|++||+||++.|+.+....-....+..||..+...|
T Consensus       167 ~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i~~~E  211 (250)
T d1yb2a1         167 NHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVE  211 (250)
T ss_dssp             GSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEE
T ss_pred             HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf             999999985697753999968767699999999978982368999


No 18 
>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}
Probab=95.23  E-value=0.011  Score=32.29  Aligned_cols=64  Identities=22%  Similarity=0.172  Sum_probs=39.2

Q ss_pred             CCEEEEECCCC-CCCCC-CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             75368308999-98899-86410088818998533322325875455676789877899866888989976768999999
Q 028754            3 IGLLRADNNLP-PWRPG-LKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDL   80 (204)
Q Consensus         3 ~dil~~D~~~~-p~R~~-~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dL   80 (204)
                      +.+..+|+... +++.. ....-+.|||+||||-|-+....                              ...+.+.++
T Consensus       146 i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~------------------------------~~~~~~~~~  195 (249)
T d1o9ga_         146 CAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQ------------------------------VPGQPVAGL  195 (249)
T ss_dssp             EEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSC------------------------------CCHHHHHHH
T ss_pred             EEEEECCHHCCCCCHHCCCCCCCCEEEECCCCCCCCCCCCC------------------------------CHHHHHHHH
T ss_conf             54653202125731110478899879847996331243455------------------------------337799999


Q ss_pred             HHHHHCCCCCCCEEEEEE
Q ss_conf             999850120697899997
Q 028754           81 LDLAGRMLVMGGRLVYFY   98 (204)
Q Consensus        81 L~~Aa~lL~~gGRLvf~l   98 (204)
                      +...++.|.  ++-+|++
T Consensus       196 ~~~l~~~~p--~~s~~~i  211 (249)
T d1o9ga_         196 LRSLASALP--AHAVIAV  211 (249)
T ss_dssp             HHHHHHHSC--TTCEEEE
T ss_pred             HHHHHCCCC--CCCEEEE
T ss_conf             999970099--9738999


No 19 
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=95.04  E-value=0.0066  Score=33.55  Aligned_cols=84  Identities=20%  Similarity=0.205  Sum_probs=51.0

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf             41008881899853332232587545567678987789986688898997676899999999985012069789999720
Q 028754           21 EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYPV  100 (204)
Q Consensus        21 ~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~Aa~lL~~gGRLvf~lP~  100 (204)
                      +.||.|++|+|=--....++   +..++..             .- +...-.+..+=..+|..|.++|++||+|||-.=+
T Consensus       170 ~~fd~IL~DaPCSg~G~~rr---~p~~~~~-------------~~-~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS  232 (284)
T d1sqga2         170 QQFDRILLDAPCSATGVIRR---HPDIKWL-------------RR-DRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS  232 (284)
T ss_dssp             CCEEEEEEECCCCCGGGTTT---CTTHHHH-------------CC-TTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred             CCCCEEEEECCCCCCCCCCC---CCCHHHC-------------CC-CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf             56557998365114675455---2002112-------------36-4104678889999999998735777667776405


Q ss_pred             CCCCCCC----CCCCCCCCEEEEEE
Q ss_conf             0588788----98888899068827
Q 028754          101 LREDSTR----NPFPEHPCFKLVAS  121 (204)
Q Consensus       101 ~~de~~e----~~lp~h~gl~Li~~  121 (204)
                      ...+..|    .-+-+|++|+++..
T Consensus       233 ~~~~ENE~vv~~~l~~~~~~~~~~~  257 (284)
T d1sqga2         233 VLPEENSLQIKAFLQRTADAELCET  257 (284)
T ss_dssp             CCGGGTHHHHHHHHHHCTTCEECSS
T ss_pred             CCHHHCHHHHHHHHHHCCCCEEECC
T ss_conf             8622289999999985999299467


No 20 
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=94.48  E-value=0.0049  Score=34.30  Aligned_cols=76  Identities=18%  Similarity=0.069  Sum_probs=44.6

Q ss_pred             EEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             83089999889986410088818998533322325875455676789877899866888989976768999999999850
Q 028754            7 RADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGR   86 (204)
Q Consensus         7 ~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~Aa~   86 (204)
                      ..|....+...   +.||.|++|+|=--....+    +++...+            .. -+..--.+..+-..+|..|.+
T Consensus       173 ~~d~~~~~~~~---~~fD~ILvDaPCSg~G~~~----r~p~~~~------------~~-~~~~~~~l~~~Q~~iL~~a~~  232 (313)
T d1ixka_         173 HSSSLHIGELN---VEFDKILLDAPCTGSGTIH----KNPERKW------------NR-TMDDIKFCQGLQMRLLEKGLE  232 (313)
T ss_dssp             SSCGGGGGGGC---CCEEEEEEECCTTSTTTCC------------------------C-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCC---CCCCEEEECCCCCCCCCEE----ECCCHHH------------HH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf             35642112446---6556799736545577352----1100112------------11-235799999888888775664


Q ss_pred             CCCCCCEEEEEEEECC
Q ss_conf             1206978999972005
Q 028754           87 MLVMGGRLVYFYPVLR  102 (204)
Q Consensus        87 lL~~gGRLvf~lP~~~  102 (204)
                      +|++||+|||-.=+..
T Consensus       233 ~lk~gG~lVYsTCSl~  248 (313)
T d1ixka_         233 VLKPGGILVYSTCSLE  248 (313)
T ss_dssp             HEEEEEEEEEEESCCC
T ss_pred             EECCCCEEEEEECCCC
T ss_conf             0477868998413677


No 21 
>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=94.34  E-value=0.01  Score=32.50  Aligned_cols=27  Identities=26%  Similarity=0.524  Sum_probs=21.0

Q ss_pred             CCEEEEECCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf             753683089999889986410088818998533
Q 028754            3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVR   35 (204)
Q Consensus         3 ~dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiR   35 (204)
                      ++++.+|+...+      +.||.||+|||||..
T Consensus        94 ~~~~~~D~~~l~------~~fD~Vi~NPPfg~~  120 (197)
T d1ne2a_          94 VNFMVADVSEIS------GKYDTWIMNPPFGSV  120 (197)
T ss_dssp             SEEEECCGGGCC------CCEEEEEECCCC---
T ss_pred             CCEEEEEHHHCC------CCCEEEEECCCCCHH
T ss_conf             157997622037------740088727664501


No 22 
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein  FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.18  E-value=0.021  Score=30.76  Aligned_cols=44  Identities=14%  Similarity=0.031  Sum_probs=27.6

Q ss_pred             HHHHHHCCCCCCCEEEEEEEECCCCCC-CCCCCC-CCCEEEEEEEE
Q ss_conf             999985012069789999720058878-898888-89906882799
Q 028754           80 LLDLAGRMLVMGGRLVYFYPVLREDST-RNPFPE-HPCFKLVASSE  123 (204)
Q Consensus        80 LL~~Aa~lL~~gGRLvf~lP~~~de~~-e~~lp~-h~gl~Li~~~~  123 (204)
                      .|..+.+.|++||+||+++|+.+.-.. -..+-. ..+|..+...|
T Consensus       194 ~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i~~~E  239 (324)
T d2b25a1         194 TLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISE  239 (324)
T ss_dssp             THHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEEEC
T ss_pred             HHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             9999999525898899995989999999999997289942568999


No 23 
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}
Probab=94.13  E-value=0.053  Score=28.45  Aligned_cols=59  Identities=15%  Similarity=0.130  Sum_probs=41.4

Q ss_pred             CEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             53683089999889986410088818998533322325875455676789877899866888989976768999999999
Q 028754            4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDL   83 (204)
Q Consensus         4 dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~   83 (204)
                      .++.+|+...|+..+   .||+|+|-      ...                        .|+|.         ...+|..
T Consensus       120 ~~~~~d~~~l~~~~~---sfD~V~~~------~~l------------------------~h~~d---------~~~~l~~  157 (282)
T d2o57a1         120 TVKYGSFLEIPCEDN---SYDFIWSQ------DAF------------------------LHSPD---------KLKVFQE  157 (282)
T ss_dssp             EEEECCTTSCSSCTT---CEEEEEEE------SCG------------------------GGCSC---------HHHHHHH
T ss_pred             CCCCCCCCCCCCCCC---CCCHHHCC------CHH------------------------HHCCC---------HHHHHHH
T ss_conf             223333333322223---33122114------025------------------------51247---------8899999


Q ss_pred             HHCCCCCCCEEEEEEEECCCC
Q ss_conf             850120697899997200588
Q 028754           84 AGRMLVMGGRLVYFYPVLRED  104 (204)
Q Consensus        84 Aa~lL~~gGRLvf~lP~~~de  104 (204)
                      +.++|++||++++.-+...+.
T Consensus       158 ~~~~LkpgG~l~~~~~~~~~~  178 (282)
T d2o57a1         158 CARVLKPRGVMAITDPMKEDG  178 (282)
T ss_dssp             HHHHEEEEEEEEEEEEEECTT
T ss_pred             HHHHCCCCCEEEEEEEECCCC
T ss_conf             998518993799998515788


No 24 
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=94.01  E-value=0.013  Score=31.94  Aligned_cols=53  Identities=25%  Similarity=0.354  Sum_probs=37.3

Q ss_pred             CEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             53683089999889986410088818998533322325875455676789877899866888989976768999999999
Q 028754            4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDL   83 (204)
Q Consensus         4 dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~   83 (204)
                      .++.+|....++-.+   .||+|++|-|             ++                               +..+..
T Consensus       153 ~~~~~d~~~~~~~~~---~fDaV~ldlp-------------~P-------------------------------~~~l~~  185 (264)
T d1i9ga_         153 RLVVSDLADSELPDG---SVDRAVLDML-------------AP-------------------------------WEVLDA  185 (264)
T ss_dssp             EEECSCGGGCCCCTT---CEEEEEEESS-------------CG-------------------------------GGGHHH
T ss_pred             EEEECCCCCCCCCCC---CCCEEEEECC-------------CH-------------------------------HHHHHH
T ss_conf             999445311456678---7666899538-------------97-------------------------------998899


Q ss_pred             HHCCCCCCCEEEEEEEECCC
Q ss_conf             85012069789999720058
Q 028754           84 AGRMLVMGGRLVYFYPVLRE  103 (204)
Q Consensus        84 Aa~lL~~gGRLvf~lP~~~d  103 (204)
                      +.+.|++||++|++.|+...
T Consensus       186 ~~~~LkpGG~lv~~~P~i~Q  205 (264)
T d1i9ga_         186 VSRLLVAGGVLMVYVATVTQ  205 (264)
T ss_dssp             HHHHEEEEEEEEEEESSHHH
T ss_pred             HHHCCCCCCEEEEEECCCCH
T ss_conf             88506779899999384683


No 25 
>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=93.30  E-value=0.018  Score=31.13  Aligned_cols=25  Identities=24%  Similarity=0.466  Sum_probs=17.7

Q ss_pred             CEEEEECCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf             5368308999988998641008881899853
Q 028754            4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGV   34 (204)
Q Consensus         4 dil~~D~~~~p~R~~~~~~~DaIVtDPPYGi   34 (204)
                      +++.+|....      .+.||.||||||||.
T Consensus        97 ~~~~~d~~~~------~~~fD~Vi~nPP~~~  121 (201)
T d1wy7a1          97 KVFIGDVSEF------NSRVDIVIMNPPFGS  121 (201)
T ss_dssp             EEEESCGGGC------CCCCSEEEECCCCSS
T ss_pred             EEEECCHHHH------CCCCCEEEECCCCCC
T ss_conf             5997753550------776758987676431


No 26 
>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}
Probab=93.09  E-value=0.15  Score=25.84  Aligned_cols=72  Identities=15%  Similarity=0.178  Sum_probs=38.9

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf             64100888189985333223258754556767898778998668889899767689999999998501206978999972
Q 028754           20 KEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYP   99 (204)
Q Consensus        20 ~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~Aa~lL~~gGRLvf~lP   99 (204)
                      .+.||.|+.||||+..                                    ....++ ++|. ...+|.++|.+++-.+
T Consensus       109 ~~~fDlIf~DPPY~~~------------------------------------~~~~~l-~~l~-~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         109 GTPHNIVFVDPPFRRG------------------------------------LLEETI-NLLE-DNGWLADEALIYVESE  150 (183)
T ss_dssp             CCCEEEEEECCSSSTT------------------------------------THHHHH-HHHH-HTTCEEEEEEEEEEEE
T ss_pred             CCCCCEEEECCCCCCC------------------------------------HHHHHH-HHHH-HCCCCCCCEEEEEEEC
T ss_conf             4326789982744356------------------------------------399999-9999-7888799829999962


Q ss_pred             ECCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEE-EEC
Q ss_conf             00588788988888990688279983489104999999-971
Q 028754          100 VLREDSTRNPFPEHPCFKLVASSEQILSSRYSRVLLTM-VKI  140 (204)
Q Consensus       100 ~~~de~~e~~lp~h~gl~Li~~~~Q~l~~k~sR~Litm-~K~  140 (204)
                      ....  . ..+  ..+|.++..      +++++.-+.+ +|.
T Consensus       151 ~~~~--~-~~~--~~~~~i~k~------k~yG~t~i~~~~k~  181 (183)
T d2fpoa1         151 VENG--L-PTV--PANWSLHRE------KVAGQVAYRLYQRE  181 (183)
T ss_dssp             GGGC--S-CCC--CTTEEEEEE------EEETTEEEEEEEEC
T ss_pred             CCCC--C-CCC--CCCCEEEEE------EEECCEEEEEEEEC
T ss_conf             7678--6-658--888399999------97086999999986


No 27 
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=92.72  E-value=0.025  Score=30.30  Aligned_cols=25  Identities=24%  Similarity=0.438  Sum_probs=20.6

Q ss_pred             HHHHHHHHHCCCCCCCEEEEEEEEC
Q ss_conf             9999999850120697899997200
Q 028754           77 VHDLLDLAGRMLVMGGRLVYFYPVL  101 (204)
Q Consensus        77 ~~dLL~~Aa~lL~~gGRLvf~lP~~  101 (204)
                      ..++++.+.++|++||++++..++.
T Consensus       113 ~~~~~~~~~~~LkpgG~lvi~~~~~  137 (186)
T d1l3ia_         113 LQEILRIIKDKLKPGGRIIVTAILL  137 (186)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred             CHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf             0679999999818598899996421


No 28 
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=92.63  E-value=0.14  Score=26.14  Aligned_cols=59  Identities=17%  Similarity=0.307  Sum_probs=39.3

Q ss_pred             CCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             75368308999988998641008881899853332232587545567678987789986688898997676899999999
Q 028754            3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD   82 (204)
Q Consensus         3 ~dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~   82 (204)
                      ...+.+|+...++..+   .||.|+|-      .+..                        |+      +-.+ ...+|.
T Consensus        86 ~~~~~~d~~~l~~~~~---~fD~I~~~------~~l~------------------------~~------~~~d-~~~~l~  125 (226)
T d1ve3a1          86 VEFIVGDARKLSFEDK---TFDYVIFI------DSIV------------------------HF------EPLE-LNQVFK  125 (226)
T ss_dssp             CEEEECCTTSCCSCTT---CEEEEEEE------SCGG------------------------GC------CHHH-HHHHHH
T ss_pred             CCCCCCCCCCCCCCCC---CCEEEEEE------CCHH------------------------HC------CHHH-HHHHHH
T ss_conf             2222455211124676---75099981------6043------------------------19------8668-999999


Q ss_pred             HHHCCCCCCCEEEEEEEEC
Q ss_conf             9850120697899997200
Q 028754           83 LAGRMLVMGGRLVYFYPVL  101 (204)
Q Consensus        83 ~Aa~lL~~gGRLvf~lP~~  101 (204)
                      .+.++|++||++++..++.
T Consensus       126 ~i~~~LkpgG~lii~~~~~  144 (226)
T d1ve3a1         126 EVRRVLKPSGKFIMYFTDL  144 (226)
T ss_dssp             HHHHHEEEEEEEEEEEECH
T ss_pred             HHHHHCCCCCEEEEEECCC
T ss_conf             9998758585899997471


No 29 
>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}
Probab=91.80  E-value=0.098  Score=26.93  Aligned_cols=62  Identities=23%  Similarity=0.225  Sum_probs=38.1

Q ss_pred             CEEEEECCCCCCCCCCCCCEEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             5368308999988998641008881899--85333223258754556767898778998668889899767689999999
Q 028754            4 GLLRADNNLPPWRPGLKEVFDAIICDPP--YGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLL   81 (204)
Q Consensus         4 dil~~D~~~~p~R~~~~~~~DaIVtDPP--YGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL   81 (204)
                      .++.+|+..-.-+.  ...||.||.|++  +|.......+                             |     -.+++
T Consensus       135 ~i~~~Da~~~l~~~--~~~yDvIi~D~~dp~~~~~~~~~L-----------------------------~-----t~eF~  178 (312)
T d1uira_         135 VLVIDDARAYLERT--EERYDVVIIDLTDPVGEDNPARLL-----------------------------Y-----TVEFY  178 (312)
T ss_dssp             EEEESCHHHHHHHC--CCCEEEEEEECCCCBSTTCGGGGG-----------------------------S-----SHHHH
T ss_pred             EEEECHHHHHHHHC--CCCCCEEEEECCCCCCCCCHHHHH-----------------------------H-----HHHHH
T ss_conf             99986099986306--776148999477754556415666-----------------------------3-----69999


Q ss_pred             HHHHCCCCCCCEEEEEEEEC
Q ss_conf             99850120697899997200
Q 028754           82 DLAGRMLVMGGRLVYFYPVL  101 (204)
Q Consensus        82 ~~Aa~lL~~gGRLvf~lP~~  101 (204)
                      +.+.++|++||-+|+|....
T Consensus       179 ~~~~~~L~p~Gvlv~~~~s~  198 (312)
T d1uira_         179 RLVKAHLNPGGVMGMQTGMI  198 (312)
T ss_dssp             HHHHHTEEEEEEEEEEEEEE
T ss_pred             HHHHHHCCCCCEEEEECCCC
T ss_conf             99997348994699954785


No 30 
>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}
Probab=91.31  E-value=0.068  Score=27.81  Aligned_cols=41  Identities=22%  Similarity=0.405  Sum_probs=25.8

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf             4100888189985333223258754556767898778998668889899767689999999998501206978999972
Q 028754           21 EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYP   99 (204)
Q Consensus        21 ~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~Aa~lL~~gGRLvf~lP   99 (204)
                      ..||-|..||||+...                                    ..+++..++  ...+|.++|-+++=.+
T Consensus       112 ~~fDlIflDPPY~~~~------------------------------------~~~~l~~i~--~~~~L~~~giIi~E~~  152 (182)
T d2fhpa1         112 LQFDLVLLDPPYAKQE------------------------------------IVSQLEKML--ERQLLTNEAVIVCETD  152 (182)
T ss_dssp             CCEEEEEECCCGGGCC------------------------------------HHHHHHHHH--HTTCEEEEEEEEEEEE
T ss_pred             CCCCEEEECHHHHHHH------------------------------------HHHHHHHHH--HCCCCCCCEEEEEECC
T ss_conf             7764378640555148------------------------------------999999999--7799889979999807


No 31 
>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.91  E-value=0.18  Score=25.38  Aligned_cols=109  Identities=13%  Similarity=0.012  Sum_probs=52.8

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             6410088818998533322325875455676-78987789986688898997---6768999999999850120697899
Q 028754           20 KEVFDAIICDPPYGVRAGGRKSGGRKLLKGV-VDPYTVPDDKRVGHIPSTAP---YCLSECVHDLLDLAGRMLVMGGRLV   95 (204)
Q Consensus        20 ~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~-~~~~~~~~~~~~~~ip~~~~---y~l~~l~~dLL~~Aa~lL~~gGRLv   95 (204)
                      .+.||.|||+|||=-..........  .+.. .++.      ...+......   ..-...+..++..+..+++..|.+.
T Consensus       134 ~~~fD~ivsNPPY~~~~e~~~~~~~--~k~~~~~p~------~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t  205 (250)
T d2h00a1         134 EIIYDFCMCNPPFFANQLEAKGVNS--RNPRRPPPS------SVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYS  205 (250)
T ss_dssp             SCCBSEEEECCCCC---------------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEE
T ss_pred             CCCEEEEEECCCCCCCCHHHHCCCC--CCCCCCCCH------HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             6754289936754455001103321--001346845------54275212323566405489999999999865484799


Q ss_pred             EEEEECCC-CCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEE
Q ss_conf             99720058-87889888889906882799834891049999999
Q 028754           96 YFYPVLRE-DSTRNPFPEHPCFKLVASSEQILSSRYSRVLLTMV  138 (204)
Q Consensus        96 f~lP~~~d-e~~e~~lp~h~gl~Li~~~~Q~l~~k~sR~Litm~  138 (204)
                      +..-.... ..+ ..+....|+.-+... ....++-+||.|.-+
T Consensus       206 ~~ig~~~~l~~i-~~~L~~~g~~~i~~i-e~~qG~~~r~iiaWs  247 (250)
T d2h00a1         206 CMLGKKCSLAPL-KEELRIQGVPKVTYT-EFCQGRTMRWALAWS  247 (250)
T ss_dssp             EEESSTTSHHHH-HHHHHHTTCSEEEEE-EEEETTEEEEEEEEE
T ss_pred             EEECCHHHHHHH-HHHHHHCCCCEEEEE-EECCCCEEEEEEEEE
T ss_conf             974636449999-999997699817999-831898727999988


No 32 
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}
Probab=90.53  E-value=0.13  Score=26.22  Aligned_cols=25  Identities=12%  Similarity=0.246  Sum_probs=20.6

Q ss_pred             HHHHHHHHHCCCCCCCEEEEEEEEC
Q ss_conf             9999999850120697899997200
Q 028754           77 VHDLLDLAGRMLVMGGRLVYFYPVL  101 (204)
Q Consensus        77 ~~dLL~~Aa~lL~~gGRLvf~lP~~  101 (204)
                      ...+|..++++|++||.++|-+++.
T Consensus       121 ~~~~l~~~~~~LkpgG~~i~~~~~~  145 (246)
T d1y8ca_         121 LKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             HHHHHHHHHHHCCCCEEEEEEECCH
T ss_conf             9999999998579986999990778


No 33 
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}
Probab=90.26  E-value=0.47  Score=23.07  Aligned_cols=56  Identities=16%  Similarity=0.202  Sum_probs=32.8

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCCCCEEEEE
Q ss_conf             64100888189985333223258754556767898778998668889899767689999999998--5012069789999
Q 028754           20 KEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLA--GRMLVMGGRLVYF   97 (204)
Q Consensus        20 ~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~A--a~lL~~gGRLvf~   97 (204)
                      .+.||-|..||||+..                                     +   +..+|+..  ..+|+++|.+++=
T Consensus       113 ~~~fDlIFlDPPY~~~-------------------------------------~---~~~~l~~l~~~~~L~~~~liiiE  152 (183)
T d2ifta1         113 QPHFDVVFLDPPFHFN-------------------------------------L---AEQAISLLCENNWLKPNALIYVE  152 (183)
T ss_dssp             SCCEEEEEECCCSSSC-------------------------------------H---HHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             CCCCCEEEECHHHHHH-------------------------------------H---HHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             7766378864067533-------------------------------------5---99999988870881889599999


Q ss_pred             EEECCCCCCCCCCCCCCCEEEEEE
Q ss_conf             720058878898888899068827
Q 028754           98 YPVLREDSTRNPFPEHPCFKLVAS  121 (204)
Q Consensus        98 lP~~~de~~e~~lp~h~gl~Li~~  121 (204)
                      .+..  +.  ...  ..+|+++..
T Consensus       153 ~~~~--~~--~~~--~~~~~~~k~  170 (183)
T d2ifta1         153 TEKD--KP--LIT--PENWTLLKE  170 (183)
T ss_dssp             EESS--SC--CCC--CTTEEEEEE
T ss_pred             ECCC--CC--CCC--CCCCEEEEE
T ss_conf             6488--88--889--998589999


No 34 
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}
Probab=90.26  E-value=0.34  Score=23.89  Aligned_cols=57  Identities=21%  Similarity=0.417  Sum_probs=37.4

Q ss_pred             CCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             75368308999988998641008881899853332232587545567678987789986688898997676899999999
Q 028754            3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD   82 (204)
Q Consensus         3 ~dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~   82 (204)
                      +..+.+|+...|+..+   .||.|+|-      ....                        |++        + ...+|.
T Consensus        65 i~~~~~d~~~l~~~~~---~fD~v~~~------~~l~------------------------~~~--------d-~~~~l~  102 (231)
T d1vl5a_          65 VEYVQGDAEQMPFTDE---RFHIVTCR------IAAH------------------------HFP--------N-PASFVS  102 (231)
T ss_dssp             EEEEECCC-CCCSCTT---CEEEEEEE------SCGG------------------------GCS--------C-HHHHHH
T ss_pred             CCCCCCCCCCCCCCCC---CCCCCCCC------CCCC------------------------CCC--------C-HHHHHH
T ss_conf             2223333222222223---33333321------0123------------------------467--------8-999999


Q ss_pred             HHHCCCCCCCEEEEEEEEC
Q ss_conf             9850120697899997200
Q 028754           83 LAGRMLVMGGRLVYFYPVL  101 (204)
Q Consensus        83 ~Aa~lL~~gGRLvf~lP~~  101 (204)
                      .+.++|++||+|++.-+..
T Consensus       103 ~~~r~LkpgG~l~i~~~~~  121 (231)
T d1vl5a_         103 EAYRVLKKGGQLLLVDNSA  121 (231)
T ss_dssp             HHHHHEEEEEEEEEEEEEB
T ss_pred             HHHHHCCCCCEEEEEECCC
T ss_conf             9998538880899996888


No 35 
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=89.93  E-value=0.37  Score=23.70  Aligned_cols=59  Identities=19%  Similarity=0.272  Sum_probs=38.8

Q ss_pred             CCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             87536830899998899864100888189985333223258754556767898778998668889899767689999999
Q 028754            2 PIGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLL   81 (204)
Q Consensus         2 p~dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL   81 (204)
                      .+.++.+|+.+.++..    .||+|+|=  ++   +..                        |      -+..+ ...+|
T Consensus        89 ~i~~~~~d~~~l~~~~----~fD~I~~~--~~---~~~------------------------~------~~~~~-~~~~L  128 (251)
T d1wzna1          89 KIEFLQGDVLEIAFKN----EFDAVTMF--FS---TIM------------------------Y------FDEED-LRKLF  128 (251)
T ss_dssp             CCEEEESCGGGCCCCS----CEEEEEEC--SS---GGG------------------------G------SCHHH-HHHHH
T ss_pred             CCHHEEHHHHHCCCCC----CCCHHHHH--HH---HHH------------------------C------CCHHH-HHHHH
T ss_conf             1000000122014553----54467664--22---133------------------------0------77678-99999


Q ss_pred             HHHHCCCCCCCEEEEEEEE
Q ss_conf             9985012069789999720
Q 028754           82 DLAGRMLVMGGRLVYFYPV  100 (204)
Q Consensus        82 ~~Aa~lL~~gGRLvf~lP~  100 (204)
                      ..+.++|++||++++-.|.
T Consensus       129 ~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         129 SKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             HHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHCCCCCEEEEEECC
T ss_conf             9999975988199999666


No 36 
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}
Probab=88.78  E-value=0.42  Score=23.39  Aligned_cols=57  Identities=19%  Similarity=0.134  Sum_probs=40.1

Q ss_pred             CCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             75368308999988998641008881899853332232587545567678987789986688898997676899999999
Q 028754            3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD   82 (204)
Q Consensus         3 ~dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~   82 (204)
                      +..+.+|+...++..+   .||.|+|-      ...                        .|++.         ...+|.
T Consensus        75 ~~~~~~d~~~l~~~~~---~fD~I~~~------~~l------------------------~h~~d---------~~~~l~  112 (208)
T d1vlma_          75 VFVLKGTAENLPLKDE---SFDFALMV------TTI------------------------CFVDD---------PERALK  112 (208)
T ss_dssp             CEEEECBTTBCCSCTT---CEEEEEEE------SCG------------------------GGSSC---------HHHHHH
T ss_pred             CCCCCCCCCCCCCCCC---CCCCCCCC------CCC------------------------CCCCC---------CCCCHH
T ss_conf             2222222222222223---33333212------222------------------------22222---------221003


Q ss_pred             HHHCCCCCCCEEEEEEEEC
Q ss_conf             9850120697899997200
Q 028754           83 LAGRMLVMGGRLVYFYPVL  101 (204)
Q Consensus        83 ~Aa~lL~~gGRLvf~lP~~  101 (204)
                      .+.++|++||++++..|..
T Consensus       113 ~~~~~L~pgG~l~i~~~~~  131 (208)
T d1vlma_         113 EAYRILKKGGYLIVGIVDR  131 (208)
T ss_dssp             HHHHHEEEEEEEEEEEECS
T ss_pred             HHHHCCCCCCEEEEEECCC
T ss_conf             4552378895499993687


No 37 
>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}
Probab=88.46  E-value=0.1  Score=26.83  Aligned_cols=53  Identities=23%  Similarity=0.336  Sum_probs=31.8

Q ss_pred             CEEEEECCCC-CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             5368308999-988998641008881899853332232587545567678987789986688898997676899999999
Q 028754            4 GLLRADNNLP-PWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD   82 (204)
Q Consensus         4 dil~~D~~~~-p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~   82 (204)
                      .++.+|+... .+-   .+.||-|+.||||+-..                                    ....+ +.| 
T Consensus        67 ~ii~~D~~~~l~~~---~~~fDiIf~DPPy~~~~------------------------------------~~~~l-~~i-  105 (152)
T d2esra1          67 TLLKMEAERAIDCL---TGRFDLVFLDPPYAKET------------------------------------IVATI-EAL-  105 (152)
T ss_dssp             EEECSCHHHHHHHB---CSCEEEEEECCSSHHHH------------------------------------HHHHH-HHH-
T ss_pred             HHHCCCCCCCCCCC---CCCCCEEEECHHHCCCH------------------------------------HHHHH-HHH-
T ss_conf             12102322100122---23343267622210106------------------------------------99999-999-


Q ss_pred             HHHCCCCCCCEEEEE
Q ss_conf             985012069789999
Q 028754           83 LAGRMLVMGGRLVYF   97 (204)
Q Consensus        83 ~Aa~lL~~gGRLvf~   97 (204)
                      ...++|+++|.+++=
T Consensus       106 ~~~~~L~~~g~iiiE  120 (152)
T d2esra1         106 AAKNLLSEQVMVVCE  120 (152)
T ss_dssp             HHTTCEEEEEEEEEE
T ss_pred             HHCCCCCCCEEEEEE
T ss_conf             987983898599998


No 38 
>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}
Probab=86.87  E-value=0.077  Score=27.52  Aligned_cols=62  Identities=16%  Similarity=0.098  Sum_probs=38.6

Q ss_pred             CEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             53683089999889986410088818998533322325875455676789877899866888989976768999999999
Q 028754            4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDL   83 (204)
Q Consensus         4 dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~   83 (204)
                      .++.+|...-.-+.  .+.||.||.|.+-+.......                             -|     -..+++.
T Consensus       146 ~v~~~Da~~~l~~~--~~~yDvIi~D~~dp~~~~~~~-----------------------------L~-----t~efy~~  189 (295)
T d1inla_         146 EIVIANGAEYVRKF--KNEFDVIIIDSTDPTAGQGGH-----------------------------LF-----TEEFYQA  189 (295)
T ss_dssp             EEEESCHHHHGGGC--SSCEEEEEEEC---------------------------------------CC-----SHHHHHH
T ss_pred             EEEHHHHHHHHHCC--CCCCCEEEECCCCCCCCCHHH-----------------------------HC-----CHHHHHH
T ss_conf             79835489997508--777778999077777673254-----------------------------41-----3999999


Q ss_pred             HHCCCCCCCEEEEEEEEC
Q ss_conf             850120697899997200
Q 028754           84 AGRMLVMGGRLVYFYPVL  101 (204)
Q Consensus        84 Aa~lL~~gGRLvf~lP~~  101 (204)
                      +.+.|+++|.+|.+....
T Consensus       190 ~~~~L~~~Gi~v~q~~sp  207 (295)
T d1inla_         190 CYDALKEDGVFSAETEDP  207 (295)
T ss_dssp             HHHHEEEEEEEEEECCCT
T ss_pred             HHHHCCCCCEEEEECCCH
T ss_conf             886228996799942783


No 39 
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}
Probab=86.65  E-value=0.48  Score=23.05  Aligned_cols=51  Identities=24%  Similarity=0.259  Sum_probs=34.5

Q ss_pred             CCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             75368308999988998641008881899853332232587545567678987789986688898997676899999999
Q 028754            3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD   82 (204)
Q Consensus         3 ~dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~   82 (204)
                      +..+++|+...|+..+   .||.|++-            .             .             +..        +.
T Consensus       131 ~~~~~~d~~~l~~~~~---sfD~v~~~------------~-------------~-------------~~~--------~~  161 (268)
T d1p91a_         131 VTFCVASSHRLPFSDT---SMDAIIRI------------Y-------------A-------------PCK--------AE  161 (268)
T ss_dssp             SEEEECCTTSCSBCTT---CEEEEEEE------------S-------------C-------------CCC--------HH
T ss_pred             CCCEEEEHHHCCCCCC---CEEEEEEC------------C-------------C-------------HHH--------HH
T ss_conf             3200110121357899---88888526------------8-------------8-------------799--------99


Q ss_pred             HHHCCCCCCCEEEEEEEECC
Q ss_conf             98501206978999972005
Q 028754           83 LAGRMLVMGGRLVYFYPVLR  102 (204)
Q Consensus        83 ~Aa~lL~~gGRLvf~lP~~~  102 (204)
                      .+.++|++||++++..|...
T Consensus       162 e~~rvLkpgG~l~~~~p~~~  181 (268)
T d1p91a_         162 ELARVVKPGGWVITATPGPR  181 (268)
T ss_dssp             HHHHHEEEEEEEEEEEECTT
T ss_pred             HHHHHHCCCCEEEEEEECCC
T ss_conf             99997088838999962895


No 40 
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}
Probab=86.35  E-value=0.65  Score=22.30  Aligned_cols=25  Identities=16%  Similarity=0.103  Sum_probs=21.0

Q ss_pred             HHHHHHHHHCCCCCCCEEEEEEEEC
Q ss_conf             9999999850120697899997200
Q 028754           77 VHDLLDLAGRMLVMGGRLVYFYPVL  101 (204)
Q Consensus        77 ~~dLL~~Aa~lL~~gGRLvf~lP~~  101 (204)
                      ...+|..+.++|++||++++.....
T Consensus       113 ~~~~l~~~~~~L~pgG~~~~~~~~~  137 (198)
T d2i6ga1         113 IPGLIANMQRCTKPGGYNLIVAAMD  137 (198)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred             HHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf             9999999999718794999999557


No 41 
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}
Probab=86.32  E-value=0.81  Score=21.76  Aligned_cols=56  Identities=20%  Similarity=0.388  Sum_probs=37.1

Q ss_pred             CCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             75368308999988998641008881899853332232587545567678987789986688898997676899999999
Q 028754            3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLD   82 (204)
Q Consensus         3 ~dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~   82 (204)
                      +.++.+|+...|+..+   .||+|+|-      .+..                        |++        + ...+|.
T Consensus        66 ~~~~~~d~~~~~~~~~---~fD~v~~~------~~l~------------------------~~~--------d-~~~~l~  103 (234)
T d1xxla_          66 VRFQQGTAESLPFPDD---SFDIITCR------YAAH------------------------HFS--------D-VRKAVR  103 (234)
T ss_dssp             EEEEECBTTBCCSCTT---CEEEEEEE------SCGG------------------------GCS--------C-HHHHHH
T ss_pred             CCCCCCCCCCCCCCCC---CCCEEEEE------CEEE------------------------CCC--------C-HHHHHH
T ss_conf             2233332222345554---54333210------1031------------------------156--------8-999999


Q ss_pred             HHHCCCCCCCEEEEEEEE
Q ss_conf             985012069789999720
Q 028754           83 LAGRMLVMGGRLVYFYPV  100 (204)
Q Consensus        83 ~Aa~lL~~gGRLvf~lP~  100 (204)
                      .+.++|++||++++....
T Consensus       104 ~~~r~LkpgG~~~~~~~~  121 (234)
T d1xxla_         104 EVARVLKQDGRFLLVDHY  121 (234)
T ss_dssp             HHHHHEEEEEEEEEEEEC
T ss_pred             HHHHEECCCCEEEEEECC
T ss_conf             997745878189999847


No 42 
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=85.48  E-value=0.61  Score=22.44  Aligned_cols=53  Identities=15%  Similarity=0.114  Sum_probs=33.8

Q ss_pred             CEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             53683089999889986410088818998533322325875455676789877899866888989976768999999999
Q 028754            4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDL   83 (204)
Q Consensus         4 dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~   83 (204)
                      .++.+|+...+....   .||.|||++..-.--                                    -..++..++..
T Consensus        87 ~~~~~~~~~l~~~~~---~~D~Ivse~~~~~~~------------------------------------~e~~~~~~~~a  127 (311)
T d2fyta1          87 TLIKGKIEEVHLPVE---KVDVIISEWMGYFLL------------------------------------FESMLDSVLYA  127 (311)
T ss_dssp             EEEESCTTTSCCSCS---CEEEEEECCCBTTBT------------------------------------TTCHHHHHHHH
T ss_pred             EEEEEEHHHHCCCCC---CCEEEEEEEEEEECC------------------------------------CCCCCHHHHHH
T ss_conf             699754888237644---411899750032213------------------------------------33211789999


Q ss_pred             HHCCCCCCCEEE
Q ss_conf             850120697899
Q 028754           84 AGRMLVMGGRLV   95 (204)
Q Consensus        84 Aa~lL~~gGRLv   95 (204)
                      ..++|++||+++
T Consensus       128 ~~~~Lkp~G~ii  139 (311)
T d2fyta1         128 KNKYLAKGGSVY  139 (311)
T ss_dssp             HHHHEEEEEEEE
T ss_pred             HHHCCCCCCEEE
T ss_conf             983589993995


No 43 
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Probab=84.87  E-value=1  Score=21.17  Aligned_cols=26  Identities=23%  Similarity=0.236  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf             99999999985012069789999720
Q 028754           75 ECVHDLLDLAGRMLVMGGRLVYFYPV  100 (204)
Q Consensus        75 ~l~~dLL~~Aa~lL~~gGRLvf~lP~  100 (204)
                      +-...+|..+.++|++||++++-.|-
T Consensus       111 ~~~~~~l~~i~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_         111 ESLDIAQRNIARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             HHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHCEECCCCEEEEEECC
T ss_conf             89988789874162899789998567


No 44 
>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=83.82  E-value=0.54  Score=22.75  Aligned_cols=59  Identities=19%  Similarity=0.067  Sum_probs=37.1

Q ss_pred             CEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             53683089999889986410088818998533322325875455676789877899866888989976768999999999
Q 028754            4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDL   83 (204)
Q Consensus         4 dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~   83 (204)
                      .++.+|+..-. +.  .+.||.||.|.+-+......                              -|     -..+++.
T Consensus       134 ~i~~~Da~~~l-~~--~~~yDvIi~D~~~~~~~~~~------------------------------L~-----t~eF~~~  175 (276)
T d1mjfa_         134 KLTIGDGFEFI-KN--NRGFDVIIADSTDPVGPAKV------------------------------LF-----SEEFYRY  175 (276)
T ss_dssp             EEEESCHHHHH-HH--CCCEEEEEEECCCCC-----------------------------------TT-----SHHHHHH
T ss_pred             EEEECHHHHHH-HC--CCCCCEEEEECCCCCCCCCC------------------------------CC-----CHHHHHH
T ss_conf             69977099998-53--67878899937888777533------------------------------34-----7999986


Q ss_pred             HHCCCCCCCEEEEEEEE
Q ss_conf             85012069789999720
Q 028754           84 AGRMLVMGGRLVYFYPV  100 (204)
Q Consensus        84 Aa~lL~~gGRLvf~lP~  100 (204)
                      +.++|+++|-+|++...
T Consensus       176 ~~~~L~~~Gv~v~q~~s  192 (276)
T d1mjfa_         176 VYDALNNPGIYVTQAGS  192 (276)
T ss_dssp             HHHHEEEEEEEEEEEEE
T ss_pred             HHHHCCCCCEEEEECCC
T ss_conf             57524899669995688


No 45 
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=83.64  E-value=0.94  Score=21.39  Aligned_cols=25  Identities=16%  Similarity=0.333  Sum_probs=19.1

Q ss_pred             HHHHHHHHHCCCCCCCEEE------EEEEEC
Q ss_conf             9999999850120697899------997200
Q 028754           77 VHDLLDLAGRMLVMGGRLV------YFYPVL  101 (204)
Q Consensus        77 ~~dLL~~Aa~lL~~gGRLv------f~lP~~  101 (204)
                      +..++....++|++||++.      +..|..
T Consensus       119 ~~~~l~~~~r~Lkp~G~iiP~~~~~~~~~v~  149 (316)
T d1oria_         119 LNTVLHARDKWLAPDGLIFPDRATLYVTAIE  149 (316)
T ss_dssp             HHHHHHHHHHHEEEEEEEESCEEEEEEEEEC
T ss_pred             HHHHHHHHHHCCCCCEEEEEEEEEEEEEEEC
T ss_conf             9999999985379986999336899999905


No 46 
>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=83.00  E-value=0.34  Score=23.91  Aligned_cols=25  Identities=28%  Similarity=0.252  Sum_probs=20.2

Q ss_pred             HHHHHHHHHCCCCCCCEEEEEEEEC
Q ss_conf             9999999850120697899997200
Q 028754           77 VHDLLDLAGRMLVMGGRLVYFYPVL  101 (204)
Q Consensus        77 ~~dLL~~Aa~lL~~gGRLvf~lP~~  101 (204)
                      ...++..+.++|++||+++|+-+..
T Consensus       142 ~~~~~~~~~r~LkpGG~~~~~~~~~  166 (229)
T d1zx0a1         142 FNFIKNHAFRLLKPGGVLTYCNLTS  166 (229)
T ss_dssp             HHHHHHTHHHHEEEEEEEEECCHHH
T ss_pred             HHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             9999999998758996899982687


No 47 
>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}
Probab=82.55  E-value=0.65  Score=22.28  Aligned_cols=24  Identities=21%  Similarity=0.198  Sum_probs=20.1

Q ss_pred             HHHHHHHHCCCCCCCEEEEEEEEC
Q ss_conf             999999850120697899997200
Q 028754           78 HDLLDLAGRMLVMGGRLVYFYPVL  101 (204)
Q Consensus        78 ~dLL~~Aa~lL~~gGRLvf~lP~~  101 (204)
                      ..+|..+.++|++||.+++..|..
T Consensus       120 ~~~l~~i~r~Lk~gG~~ii~~~~~  143 (246)
T d2avna1         120 DKAFSEIRRVLVPDGLLIATVDNF  143 (246)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             HHHHHHHHHHCCCCCEEEEEECCH
T ss_conf             999999873348485899997877


No 48 
>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}
Probab=79.48  E-value=0.36  Score=23.72  Aligned_cols=61  Identities=13%  Similarity=0.097  Sum_probs=37.8

Q ss_pred             CEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             53683089999889986410088818998533322325875455676789877899866888989976768999999999
Q 028754            4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDL   83 (204)
Q Consensus         4 dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~   83 (204)
                      .++.+|...-.-+.  ...||.||.|++=+...+..                              -|     -..+.+.
T Consensus       132 ~i~~~D~~~~l~~~--~~~yDvIi~D~~~p~~~~~~------------------------------L~-----t~eFy~~  174 (274)
T d1iy9a_         132 DVQVDDGFMHIAKS--ENQYDVIMVDSTEPVGPAVN------------------------------LF-----TKGFYAG  174 (274)
T ss_dssp             EEEESCSHHHHHTC--CSCEEEEEESCSSCCSCCCC------------------------------CS-----TTHHHHH
T ss_pred             EEEECHHHHHHHHC--CCCCCEEEECCCCCCCCCHH------------------------------HC-----CHHHHHH
T ss_conf             89963689998625--78778899828998874165------------------------------51-----3999999


Q ss_pred             HHCCCCCCCEEEEEEEEC
Q ss_conf             850120697899997200
Q 028754           84 AGRMLVMGGRLVYFYPVL  101 (204)
Q Consensus        84 Aa~lL~~gGRLvf~lP~~  101 (204)
                      +.++|+++|-+|.|.+..
T Consensus       175 ~~~~L~~~Gv~v~q~~s~  192 (274)
T d1iy9a_         175 IAKALKEDGIFVAQTDNP  192 (274)
T ss_dssp             HHHHEEEEEEEEEECCCT
T ss_pred             HHHHCCCCCEEEEECCCC
T ss_conf             876527995699946882


No 49 
>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}
Probab=79.02  E-value=0.58  Score=22.59  Aligned_cols=66  Identities=15%  Similarity=0.059  Sum_probs=43.5

Q ss_pred             HHHHHHHHHCCCCCCCEEEEEEEECCCCCCCC--CCCCCCCEEEEEEEEEECCC-CEEEEEEEEEECCC
Q ss_conf             99999998501206978999972005887889--88888990688279983489-10499999997199
Q 028754           77 VHDLLDLAGRMLVMGGRLVYFYPVLREDSTRN--PFPEHPCFKLVASSEQILSS-RYSRVLLTMVKIGP  142 (204)
Q Consensus        77 ~~dLL~~Aa~lL~~gGRLvf~lP~~~de~~e~--~lp~h~gl~Li~~~~Q~l~~-k~sR~Litm~K~~~  142 (204)
                      +.++|+.+..+++++|++.++--....+..+.  ......++.+.....-.+.. .-.|.|+++.|..+
T Consensus       153 l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~~~r~lv~i~K~~~  221 (239)
T d1xdza_         153 LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIKN  221 (239)
T ss_dssp             HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECSC
T ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEEECCC
T ss_conf             789999876510669899997799859999989989997398799999985798889779999997899


No 50 
>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=78.60  E-value=0.71  Score=22.07  Aligned_cols=46  Identities=20%  Similarity=0.203  Sum_probs=29.4

Q ss_pred             CEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             53683089999889986410088818998533322325875455676789877899866888989976768999999999
Q 028754            4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDL   83 (204)
Q Consensus         4 dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~   83 (204)
                      .++.+|+...+-    .+.||-||.+||++.                                           .++|..
T Consensus       160 ~~~~~D~~~~~~----~~~~D~Ii~~~p~~~-------------------------------------------~~~l~~  192 (260)
T d2frna1         160 SAYNMDNRDFPG----ENIADRILMGYVVRT-------------------------------------------HEFIPK  192 (260)
T ss_dssp             EEECSCTTTCCC----CSCEEEEEECCCSSG-------------------------------------------GGGHHH
T ss_pred             EEEECCHHHHCC----CCCCCEEEECCCCCH-------------------------------------------HHHHHH
T ss_conf             999823688445----787899998898726-------------------------------------------888999


Q ss_pred             HHCCCCCCCEEEE
Q ss_conf             8501206978999
Q 028754           84 AGRMLVMGGRLVY   96 (204)
Q Consensus        84 Aa~lL~~gGRLvf   96 (204)
                      |.++|++||.|.+
T Consensus       193 a~~~l~~gG~lh~  205 (260)
T d2frna1         193 ALSIAKDGAIIHY  205 (260)
T ss_dssp             HHHHEEEEEEEEE
T ss_pred             HHHHCCCCCEEEE
T ss_conf             9864579979999


No 51 
>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=77.84  E-value=1.4  Score=20.44  Aligned_cols=46  Identities=22%  Similarity=0.318  Sum_probs=32.7

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf             41008881899853332232587545567678987789986688898997676899999999985012069789999720
Q 028754           21 EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYPV  100 (204)
Q Consensus        21 ~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~Aa~lL~~gGRLvf~lP~  100 (204)
                      +.||.||.|.+-+...+.+       .                       |     -..+++.+.+.|+++|-+|++.+.
T Consensus       153 ~~yDvIi~D~~dp~~~~~~-------L-----------------------~-----t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         153 GSYDAVIVDSSDPIGPAKE-------L-----------------------F-----EKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             TCEEEEEECCCCTTSGGGG-------G-----------------------G-----SHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CCCCEEEECCCCCCCCCHH-------H-----------------------C-----CHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             5750899827787775422-------2-----------------------7-----999999999734899579994688


Q ss_pred             C
Q ss_conf             0
Q 028754          101 L  101 (204)
Q Consensus       101 ~  101 (204)
                      .
T Consensus       198 ~  198 (290)
T d1xj5a_         198 L  198 (290)
T ss_dssp             T
T ss_pred             C
T ss_conf             2


No 52 
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}
Probab=76.92  E-value=1.7  Score=20.01  Aligned_cols=28  Identities=18%  Similarity=0.134  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf             9999999985012069789999720058
Q 028754           76 CVHDLLDLAGRMLVMGGRLVYFYPVLRE  103 (204)
Q Consensus        76 l~~dLL~~Aa~lL~~gGRLvf~lP~~~d  103 (204)
                      -...+|..+.++|++||.+++.-+...+
T Consensus       144 ~~~~~l~~i~~~Lk~~G~~~i~~~~~~~  171 (222)
T d2ex4a1         144 HLAEFLRRCKGSLRPNGIIVIKDNMAQE  171 (222)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEEEBSS
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             5554788998743876149998765556


No 53 
>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}
Probab=76.33  E-value=0.44  Score=23.26  Aligned_cols=45  Identities=18%  Similarity=0.137  Sum_probs=29.0

Q ss_pred             HHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf             999998501206978999972005887889888889906882799
Q 028754           79 DLLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASSE  123 (204)
Q Consensus        79 dLL~~Aa~lL~~gGRLvf~lP~~~de~~e~~lp~h~gl~Li~~~~  123 (204)
                      ..|+.+.++|++||+||++.|+.+.-..-....+..+|..+...|
T Consensus       185 ~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~i~~~E  229 (266)
T d1o54a_         185 NYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWE  229 (266)
T ss_dssp             GTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEEC
T ss_pred             HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEE
T ss_conf             999999960389977999947643899999999878961689999


No 54 
>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=75.64  E-value=1.1  Score=21.03  Aligned_cols=33  Identities=15%  Similarity=0.081  Sum_probs=23.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             889899767689999999998501206978999
Q 028754           64 HIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVY   96 (204)
Q Consensus        64 ~ip~~~~y~l~~l~~dLL~~Aa~lL~~gGRLvf   96 (204)
                      |++....-...+-+..++..+.++|++||++++
T Consensus       138 H~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l  170 (291)
T d1kpia_         138 HFADGAGDAGFERYDTFFKKFYNLTPDDGRMLL  170 (291)
T ss_dssp             GTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEE
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             601255556789999999999974799875578


No 55 
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}
Probab=75.58  E-value=2.1  Score=19.45  Aligned_cols=24  Identities=21%  Similarity=0.391  Sum_probs=20.3

Q ss_pred             HHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf             999999985012069789999720
Q 028754           77 VHDLLDLAGRMLVMGGRLVYFYPV  100 (204)
Q Consensus        77 ~~dLL~~Aa~lL~~gGRLvf~lP~  100 (204)
                      ...+|..+.+.|++||+++.+-|.
T Consensus       110 ~~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1         110 PETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             999999999971859689999788


No 56 
>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}
Probab=75.55  E-value=2.2  Score=19.33  Aligned_cols=62  Identities=11%  Similarity=0.126  Sum_probs=40.8

Q ss_pred             HHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCC-EEEEEEEEEECC
Q ss_conf             99999998501206978999972005887889888889906882799834891-049999999719
Q 028754           77 VHDLLDLAGRMLVMGGRLVYFYPVLREDSTRNPFPEHPCFKLVASSEQILSSR-YSRVLLTMVKIG  141 (204)
Q Consensus        77 ~~dLL~~Aa~lL~~gGRLvf~lP~~~de~~e~~lp~h~gl~Li~~~~Q~l~~k-~sR~Litm~K~~  141 (204)
                      +..++..+..+++++|+++++-=....+.. ..+  ..+|++.......+... -.|.|++++|.+
T Consensus       144 ~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl-~~~--~~~~~~~~~~~~~~p~~~~~R~iv~ikk~k  206 (207)
T d1jsxa_         144 LNDMVSWCHHLPGEQGRFYALKGQMPEDEI-ALL--PEEYQVESVVKLQVPALDGERHLVVIKANK  206 (207)
T ss_dssp             HHHHHHHHTTSEEEEEEEEEEESSCCHHHH-HTS--CTTEEEEEEEEEECC--CCEEEEEEEEECC
T ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCHHHHH-HHH--HCCCEEEEEEEECCCCCCCCEEEEEEEECC
T ss_conf             999999999844899599997899989999-843--308879999994179887847999998144


No 57 
>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.33  E-value=0.9  Score=21.50  Aligned_cols=61  Identities=20%  Similarity=0.107  Sum_probs=37.4

Q ss_pred             CEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             53683089999889986410088818998533322325875455676789877899866888989976768999999999
Q 028754            4 GLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDL   83 (204)
Q Consensus         4 dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~   83 (204)
                      .++.+|...-.-..  .+.||.||.|++-+......       +                            .-..+++.
T Consensus       135 ~i~~~Da~~~l~~~--~~~yDvIi~D~~~p~~~~~~-------L----------------------------~t~eF~~~  177 (285)
T d2o07a1         135 TLHVGDGFEFMKQN--QDAFDVIITDSSDPMGPAES-------L----------------------------FKESYYQL  177 (285)
T ss_dssp             EEEESCHHHHHHTC--SSCEEEEEEECC----------------------------------------------CHHHHH
T ss_pred             EEEECCHHHHHHCC--CCCCCEEEECCCCCCCCCCC-------C----------------------------CCHHHHHH
T ss_conf             69985489997427--87777899947898874401-------1----------------------------46999999


Q ss_pred             HHCCCCCCCEEEEEEEEC
Q ss_conf             850120697899997200
Q 028754           84 AGRMLVMGGRLVYFYPVL  101 (204)
Q Consensus        84 Aa~lL~~gGRLvf~lP~~  101 (204)
                      +++.|+++|-+|++....
T Consensus       178 ~~~~L~~~Gi~v~q~~s~  195 (285)
T d2o07a1         178 MKTALKEDGVLCCQGECQ  195 (285)
T ss_dssp             HHHHEEEEEEEEEEEECT
T ss_pred             HHHHCCCCCEEEEECCCH
T ss_conf             998558997599944663


No 58 
>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}
Probab=73.40  E-value=1.2  Score=20.81  Aligned_cols=47  Identities=23%  Similarity=0.165  Sum_probs=32.1

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf             64100888189985333223258754556767898778998668889899767689999999998501206978999972
Q 028754           20 KEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRMLVMGGRLVYFYP   99 (204)
Q Consensus        20 ~~~~DaIVtDPPYGiRa~~r~~G~~~~~~~~~~~~~~~~~~~~~~ip~~~~y~l~~l~~dLL~~Aa~lL~~gGRLvf~lP   99 (204)
                      ...||.||.|.+=+...+..                              -     .-..+++.+.+.|+++|-+|.+..
T Consensus       177 ~~~yDvII~D~~dp~~~~~~------------------------------L-----~t~eFy~~~~~~L~~~Gi~v~q~~  221 (312)
T d2b2ca1         177 KNEFDVIITDSSDPVGPAES------------------------------L-----FGQSYYELLRDALKEDGILSSQGE  221 (312)
T ss_dssp             TTCEEEEEECCC------------------------------------------------HHHHHHHHEEEEEEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCCHH------------------------------H-----HHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             88777899927888886456------------------------------6-----319999999862378967999368


Q ss_pred             EC
Q ss_conf             00
Q 028754          100 VL  101 (204)
Q Consensus       100 ~~  101 (204)
                      ..
T Consensus       222 s~  223 (312)
T d2b2ca1         222 SV  223 (312)
T ss_dssp             CT
T ss_pred             CH
T ss_conf             74


No 59 
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}
Probab=70.10  E-value=1.8  Score=19.80  Aligned_cols=27  Identities=30%  Similarity=0.359  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEEEEEC
Q ss_conf             999999999850120697899997200
Q 028754           75 ECVHDLLDLAGRMLVMGGRLVYFYPVL  101 (204)
Q Consensus        75 ~l~~dLL~~Aa~lL~~gGRLvf~lP~~  101 (204)
                      ....+.|+.|..+|++||+++.+.=+.
T Consensus       118 ~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2         118 ENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             HHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             469999999998348787462010344


No 60 
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=68.50  E-value=3.2  Score=18.39  Aligned_cols=26  Identities=19%  Similarity=0.267  Sum_probs=19.5

Q ss_pred             HHHHHHHHHCCCCCCCEE------EEEEEECC
Q ss_conf             999999985012069789------99972005
Q 028754           77 VHDLLDLAGRMLVMGGRL------VYFYPVLR  102 (204)
Q Consensus        77 ~~dLL~~Aa~lL~~gGRL------vf~lP~~~  102 (204)
                      ...++....++|++||++      ++..|...
T Consensus       124 ~~~~~~a~~r~LkpgG~iiP~~~~~~~~~v~~  155 (328)
T d1g6q1_         124 MDTVLYARDHYLVEGGLIFPDKCSIHLAGLED  155 (328)
T ss_dssp             HHHHHHHHHHHEEEEEEEESCEEEEEEEEECC
T ss_pred             HHHHHHHHHHCCCCCEEEEEEECCEEEECCCC
T ss_conf             79999998706699749995102256551467


No 61 
>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}
Probab=66.60  E-value=3.2  Score=18.39  Aligned_cols=26  Identities=8%  Similarity=0.093  Sum_probs=21.3

Q ss_pred             HHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf             99999998501206978999972005
Q 028754           77 VHDLLDLAGRMLVMGGRLVYFYPVLR  102 (204)
Q Consensus        77 ~~dLL~~Aa~lL~~gGRLvf~lP~~~  102 (204)
                      ...+|..+.+.|++||++++.-+...
T Consensus       176 ~~~~l~~~~~~LkpgG~iii~e~~~~  201 (254)
T d1xtpa_         176 FVKFFKHCQQALTPNGYIFFKENCST  201 (254)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEBC-
T ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             57999999976489968999966778


No 62 
>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}
Probab=61.31  E-value=0.79  Score=21.83  Aligned_cols=60  Identities=17%  Similarity=0.147  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHCCCCCCCEEEE--EEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEE
Q ss_conf             689999999998501206978999--9720058878898888899068827998348910499999997
Q 028754           73 LSECVHDLLDLAGRMLVMGGRLVY--FYPVLREDSTRNPFPEHPCFKLVASSEQILSSRYSRVLLTMVK  139 (204)
Q Consensus        73 l~~l~~dLL~~Aa~lL~~gGRLvf--~lP~~~de~~e~~lp~h~gl~Li~~~~Q~l~~k~sR~Litm~K  139 (204)
                      +.+.+.+++....++|++||+|++  ++....++ + ....+..||.++....+   +.|.  .++++|
T Consensus       193 ~~~~l~~l~~~~~~~LkpGG~lilSgil~~~~~~-v-~~~~~~~Gf~~~~~~~~---~~Wv--~l~~~r  254 (254)
T d2nxca1         193 YAELHAALAPRYREALVPGGRALLTGILKDRAPL-V-REAMAGAGFRPLEEAAE---GEWV--LLAYGR  254 (254)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHH-H-HHHHHHTTCEEEEEEEE---TTEE--EEEEEC
T ss_pred             CCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHH-H-HHHHHHCCCEEEEEEEE---CCEE--EEEEEC
T ss_conf             4320799999999866888599998265512999-9-99999889989899999---9899--999969


No 63 
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=60.63  E-value=4.6  Score=17.52  Aligned_cols=23  Identities=26%  Similarity=0.137  Sum_probs=15.4

Q ss_pred             HHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf             99999998501206978999972
Q 028754           77 VHDLLDLAGRMLVMGGRLVYFYP   99 (204)
Q Consensus        77 ~~dLL~~Aa~lL~~gGRLvf~lP   99 (204)
                      ...++..+.+.|++||+++....
T Consensus       157 ~~~~l~~~~~~LkpgG~lvi~~k  179 (227)
T d1g8aa_         157 AKILIDNAEVYLKRGGYGMIAVK  179 (227)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             99999999986043874999997


No 64 
>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}
Probab=57.67  E-value=3  Score=18.51  Aligned_cols=29  Identities=21%  Similarity=0.103  Sum_probs=23.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf             76768999999999850120697899997
Q 028754           70 PYCLSECVHDLLDLAGRMLVMGGRLVYFY   98 (204)
Q Consensus        70 ~y~l~~l~~dLL~~Aa~lL~~gGRLvf~l   98 (204)
                      .....+|...-|.+|.++|++||-+|.=+
T Consensus       108 ~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~  136 (180)
T d1ej0a_         108 IPRAMYLVELALEMCRDVLAPGGSFVVKV  136 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             88899999999976664037787189999


No 65 
>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.57  E-value=3.4  Score=18.21  Aligned_cols=26  Identities=23%  Similarity=0.295  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEEEEEC
Q ss_conf             99999999850120697899997200
Q 028754           76 CVHDLLDLAGRMLVMGGRLVYFYPVL  101 (204)
Q Consensus        76 l~~dLL~~Aa~lL~~gGRLvf~lP~~  101 (204)
                      -+...|..++++|+|||.|++.-+..
T Consensus       176 ~~~~~l~~~~~~LkPGG~li~~~~~~  201 (263)
T d2g72a1         176 SFQRALDHITTLLRPGGHLLLIGALE  201 (263)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEEEEEES
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             99999999998728897799951357


No 66 
>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.43  E-value=1.1  Score=20.98  Aligned_cols=14  Identities=36%  Similarity=0.339  Sum_probs=11.2

Q ss_pred             HCCCCCCCEEEEEE
Q ss_conf             50120697899997
Q 028754           85 GRMLVMGGRLVYFY   98 (204)
Q Consensus        85 a~lL~~gGRLvf~l   98 (204)
                      .+.|++|||||+..
T Consensus       168 ~~~LkpGG~LV~pv  181 (224)
T d1i1na_         168 IDQLKPGGRLILPV  181 (224)
T ss_dssp             HHTEEEEEEEEEEE
T ss_pred             HHHCCCCCEEEEEE
T ss_conf             95328896899998


No 67 
>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=56.22  E-value=3.6  Score=18.09  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=18.5

Q ss_pred             HHHHHHHHHCCCCCCCEEEEE
Q ss_conf             999999985012069789999
Q 028754           77 VHDLLDLAGRMLVMGGRLVYF   97 (204)
Q Consensus        77 ~~dLL~~Aa~lL~~gGRLvf~   97 (204)
                      +..++..+.++|++||++++-
T Consensus       145 ~~~~~~~~~r~LkpgG~~~l~  165 (285)
T d1kpga_         145 YDAFFSLAHRLLPADGVMLLH  165 (285)
T ss_dssp             HHHHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHHHHHCCCCCCEEEE
T ss_conf             789999998524899719999


No 68 
>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}
Probab=52.64  E-value=6.3  Score=16.75  Aligned_cols=20  Identities=15%  Similarity=0.184  Sum_probs=16.1

Q ss_pred             HHHHHHHHHCCCCCCCEEEE
Q ss_conf             99999998501206978999
Q 028754           77 VHDLLDLAGRMLVMGGRLVY   96 (204)
Q Consensus        77 ~~dLL~~Aa~lL~~gGRLvf   96 (204)
                      -..+|++|.+.|++||-+|+
T Consensus       154 tl~vLela~~wLk~gg~Fvv  173 (257)
T d2p41a1         154 TLRVLNLVENWLSNNTQFCV  173 (257)
T ss_dssp             HHHHHHHHHHHCCTTCEEEE
T ss_pred             HHHHHHHHHHHCCCCCEEEE
T ss_conf             79999999998165987999


No 69 
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=51.56  E-value=4.8  Score=17.41  Aligned_cols=22  Identities=14%  Similarity=0.203  Sum_probs=19.2

Q ss_pred             HHHHHHHHHCCCCCCCEEEEEE
Q ss_conf             9999999850120697899997
Q 028754           77 VHDLLDLAGRMLVMGGRLVYFY   98 (204)
Q Consensus        77 ~~dLL~~Aa~lL~~gGRLvf~l   98 (204)
                      +..++..++++|++||+++.=.
T Consensus       135 ~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         135 YDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             HHHHHHHHHHHSCTTCEEEEEE
T ss_pred             HHHHHHHHHHCCCCCCEEEEEE
T ss_conf             8899999874118996189998


No 70 
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}
Probab=51.41  E-value=4.8  Score=17.40  Aligned_cols=28  Identities=21%  Similarity=0.197  Sum_probs=23.0

Q ss_pred             HHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf             9999999850120697899997200588
Q 028754           77 VHDLLDLAGRMLVMGGRLVYFYPVLRED  104 (204)
Q Consensus        77 ~~dLL~~Aa~lL~~gGRLvf~lP~~~de  104 (204)
                      ...+|..+.++|++||++++.-|.....
T Consensus       116 ~~~~l~~~~r~LkPGG~l~i~~~~~~~~  143 (245)
T d1nkva_         116 FAGAEELLAQSLKPGGIMLIGEPYWRQL  143 (245)
T ss_dssp             SHHHHHHHTTSEEEEEEEEEEEEEETTC
T ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf             7898999998708386899985654678


No 71 
>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.99  E-value=6.7  Score=16.59  Aligned_cols=28  Identities=7%  Similarity=-0.222  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf             9999999998501206978999972005
Q 028754           75 ECVHDLLDLAGRMLVMGGRLVYFYPVLR  102 (204)
Q Consensus        75 ~l~~dLL~~Aa~lL~~gGRLvf~lP~~~  102 (204)
                      +.....+....++|++||++++......
T Consensus       145 ~~r~~~~~~~~~~LkpgG~~~l~~~~~~  172 (229)
T d2bzga1         145 GDRKCYADTMFSLLGKKFQYLLCVLSYD  172 (229)
T ss_dssp             GGHHHHHHHHHHTEEEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             2567899999864097626999984468


No 72 
>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=48.38  E-value=5.1  Score=17.26  Aligned_cols=32  Identities=13%  Similarity=0.130  Sum_probs=21.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             88989976768999999999850120697899
Q 028754           64 HIPSTAPYCLSECVHDLLDLAGRMLVMGGRLV   95 (204)
Q Consensus        64 ~ip~~~~y~l~~l~~dLL~~Aa~lL~~gGRLv   95 (204)
                      -.|.+.+|.-.--+.-||..+++.-..-|+-+
T Consensus       182 ~~~~~~~~~~E~glRill~~i~r~Aa~~~~~i  213 (375)
T d2dula1         182 AVPLRGELCHEVGTRILVGVIARYAAKYDLGI  213 (375)
T ss_dssp             SBCCCSTTHHHHHHHHHHHHHHHHHHTTTEEE
T ss_pred             CEECCCCCCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             76137866501889999999999987429805


No 73 
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=45.85  E-value=5.8  Score=16.92  Aligned_cols=23  Identities=26%  Similarity=0.092  Sum_probs=19.9

Q ss_pred             HHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf             99999998501206978999972
Q 028754           77 VHDLLDLAGRMLVMGGRLVYFYP   99 (204)
Q Consensus        77 ~~dLL~~Aa~lL~~gGRLvf~lP   99 (204)
                      ...+|..+.++|++||+|+|-++
T Consensus       153 ~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         153 HRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             99999999987685819999505


No 74 
>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}
Probab=44.86  E-value=6.6  Score=16.62  Aligned_cols=21  Identities=14%  Similarity=0.259  Sum_probs=18.3

Q ss_pred             HHHHHHHHHCCCCCCCEEEEE
Q ss_conf             999999985012069789999
Q 028754           77 VHDLLDLAGRMLVMGGRLVYF   97 (204)
Q Consensus        77 ~~dLL~~Aa~lL~~gGRLvf~   97 (204)
                      -..+|+.++++|++||.|.+.
T Consensus       123 ~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1         123 YSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             SHHHHHHHHHHHTTSCEEEEE
T ss_pred             HHHHHHHHHHHCCCCCEEEEE
T ss_conf             788999999847977679999


No 75 
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=44.79  E-value=8.4  Score=16.03  Aligned_cols=18  Identities=28%  Similarity=0.204  Sum_probs=7.1

Q ss_pred             HHHHHHCCCCCCCEEEEE
Q ss_conf             999985012069789999
Q 028754           80 LLDLAGRMLVMGGRLVYF   97 (204)
Q Consensus        80 LL~~Aa~lL~~gGRLvf~   97 (204)
                      +|..+.+.|++||++++.
T Consensus       142 ~l~~~~~~LkpgG~l~i~  159 (209)
T d1nt2a_         142 LKANAEFFLKEKGEVVIM  159 (209)
T ss_dssp             HHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHCCCCEEEEE
T ss_conf             999999874069769999


No 76 
>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.62  E-value=6.9  Score=16.50  Aligned_cols=28  Identities=21%  Similarity=0.172  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf             9999999998501206978999972005
Q 028754           75 ECVHDLLDLAGRMLVMGGRLVYFYPVLR  102 (204)
Q Consensus        75 ~l~~dLL~~Aa~lL~~gGRLvf~lP~~~  102 (204)
                      +-+..++..+.++|++||++++.-+...
T Consensus       170 ~~~~~~l~~i~~~LkpGG~li~~~~~~~  197 (257)
T d2a14a1         170 DAYRAALCNLASLLKPGGHLVTTVTLRL  197 (257)
T ss_dssp             HHHHHHHHHHHTTEEEEEEEEEEEESSC
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf             8899999999860489957999984366


No 77 
>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}
Probab=42.56  E-value=1.9  Score=19.72  Aligned_cols=13  Identities=31%  Similarity=0.304  Sum_probs=10.0

Q ss_pred             HCCCCCCCEEEEE
Q ss_conf             5012069789999
Q 028754           85 GRMLVMGGRLVYF   97 (204)
Q Consensus        85 a~lL~~gGRLvf~   97 (204)
                      .+.|++||||++.
T Consensus       162 ~~~LkpGG~lv~p  174 (213)
T d1dl5a1         162 FTQLKEGGRVIVP  174 (213)
T ss_dssp             HHHEEEEEEEEEE
T ss_pred             HHHCCCCCEEEEE
T ss_conf             9854889599999


No 78 
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}
Probab=40.27  E-value=9.9  Score=15.62  Aligned_cols=24  Identities=21%  Similarity=0.265  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf             999999999850120697899997
Q 028754           75 ECVHDLLDLAGRMLVMGGRLVYFY   98 (204)
Q Consensus        75 ~l~~dLL~~Aa~lL~~gGRLvf~l   98 (204)
                      +-...+|..+.+.|++||+|++.=
T Consensus       162 ~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         162 HDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             HHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             666778999998569872799996


No 79 
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.74  E-value=11  Score=15.35  Aligned_cols=25  Identities=8%  Similarity=0.084  Sum_probs=21.5

Q ss_pred             HHHHHHHHHCCCCCCCEEEEEEEEC
Q ss_conf             9999999850120697899997200
Q 028754           77 VHDLLDLAGRMLVMGGRLVYFYPVL  101 (204)
Q Consensus        77 ~~dLL~~Aa~lL~~gGRLvf~lP~~  101 (204)
                      ...+|..+.++|++||.|+++.+..
T Consensus       139 ~~~~l~~l~~~LkpgG~l~i~~~~~  163 (280)
T d1jqea_         139 IPATLKFFHSLLGTNAKMLIIVVSG  163 (280)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             HHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf             9999999976188897999999668


No 80 
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Probab=33.80  E-value=7.7  Score=16.22  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             9999999985012069789999
Q 028754           76 CVHDLLDLAGRMLVMGGRLVYF   97 (204)
Q Consensus        76 l~~dLL~~Aa~lL~~gGRLvf~   97 (204)
                      +...+|+..+++|++||.|.+.
T Consensus       124 ~~~~~l~~~~~~LkpgG~l~i~  145 (204)
T d1yzha1         124 TYKTFLDTFKRILPENGEIHFK  145 (204)
T ss_dssp             TSHHHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHHHHHHCCCCCEEEEE
T ss_conf             3788999999738877489999


No 81 
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}
Probab=24.72  E-value=18  Score=14.10  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=17.2

Q ss_pred             HHHHHH-HCCCCCCCEEEEEEEEC
Q ss_conf             999998-50120697899997200
Q 028754           79 DLLDLA-GRMLVMGGRLVYFYPVL  101 (204)
Q Consensus        79 dLL~~A-a~lL~~gGRLvf~lP~~  101 (204)
                      .+|... .++|++||.+++-+|-.
T Consensus        99 ~~l~~i~~~~Lk~gG~l~i~~pn~  122 (225)
T d2p7ia1          99 ALLKRINDDWLAEGGRLFLVCPNA  122 (225)
T ss_dssp             HHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             HHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             999999997318995699996796


No 82 
>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}
Probab=23.30  E-value=20  Score=13.94  Aligned_cols=33  Identities=15%  Similarity=0.110  Sum_probs=24.5

Q ss_pred             CCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             753683089999889986410088818998533322
Q 028754            3 IGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGG   38 (204)
Q Consensus         3 ~dil~~D~~~~p~R~~~~~~~DaIVtDPPYGiRa~~   38 (204)
                      +.++.+|+....|...   ..+.||...||.|.+..
T Consensus        77 ~~ii~~D~l~~~~~~~---~~~~vv~NLPY~Ist~i  109 (245)
T d1yuba_          77 VTLIHQDILQFQFPNK---QRYKIVGNIPYHLSTQI  109 (245)
T ss_dssp             EEECCSCCTTTTCCCS---SEEEEEEECCSSSCHHH
T ss_pred             HHHHHHHHHCCCCCCC---EEEEEEEEEEHHHHHHH
T ss_conf             3565456540352002---02567400202144789


No 83 
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.38  E-value=20  Score=13.84  Aligned_cols=24  Identities=8%  Similarity=0.174  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             899999999985012069789999
Q 028754           74 SECVHDLLDLAGRMLVMGGRLVYF   97 (204)
Q Consensus        74 ~~l~~dLL~~Aa~lL~~gGRLvf~   97 (204)
                      ..-+...|....+.|++|||++..
T Consensus       309 ~~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         309 DEDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             CHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             367999999999726998289991


No 84 
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}
Probab=20.40  E-value=23  Score=13.60  Aligned_cols=24  Identities=25%  Similarity=-0.007  Sum_probs=19.5

Q ss_pred             HHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf             999999985012069789999720
Q 028754           77 VHDLLDLAGRMLVMGGRLVYFYPV  100 (204)
Q Consensus        77 ~~dLL~~Aa~lL~~gGRLvf~lP~  100 (204)
                      ...+|..+.+.|++||.+++.-+.
T Consensus       126 ~~~~l~~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_         126 RIALLTKIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHCCCCCEEECCCCC
T ss_conf             788999999747898655524346


Done!