Query 028755
Match_columns 204
No_of_seqs 138 out of 1031
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 16:28:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02373 soluble inorganic pyr 100.0 5.2E-73 1.1E-77 477.0 19.7 175 30-204 1-175 (188)
2 PRK00642 inorganic pyrophospha 100.0 2.6E-69 5.7E-74 459.9 19.5 171 34-204 5-197 (205)
3 PRK01250 inorganic pyrophospha 100.0 1E-67 2.2E-72 441.2 18.7 166 39-204 1-170 (176)
4 PLN02707 Soluble inorganic pyr 100.0 5.2E-67 1.1E-71 460.1 19.5 190 13-204 33-248 (267)
5 cd00412 pyrophosphatase Inorga 100.0 1.8E-64 3.8E-69 414.3 17.5 153 52-204 1-154 (155)
6 PRK02230 inorganic pyrophospha 100.0 4.6E-63 1E-67 415.3 17.8 153 52-204 3-156 (184)
7 PF00719 Pyrophosphatase: Inor 100.0 3.2E-62 6.9E-67 401.1 13.4 150 55-204 1-151 (156)
8 COG0221 Ppa Inorganic pyrophos 100.0 9.8E-61 2.1E-65 397.5 16.9 165 39-204 1-166 (171)
9 KOG1626 Inorganic pyrophosphat 100.0 9E-57 1.9E-61 390.8 13.8 190 14-204 5-224 (279)
10 KOG1626 Inorganic pyrophosphat 95.0 0.028 6E-07 50.3 3.8 62 8-69 8-70 (279)
11 cd05694 S1_Rrp5_repeat_hs2_sc2 42.8 18 0.0004 25.7 1.9 28 93-130 30-57 (74)
12 PF07177 Neuralized: Neuralize 40.6 28 0.00061 24.8 2.5 22 108-129 30-51 (69)
13 cd01460 vWA_midasin VWA_Midasi 39.8 13 0.00029 33.2 0.9 27 151-177 237-263 (266)
14 KOG1110 Putative steroid membr 36.5 19 0.00041 30.8 1.3 38 141-179 108-145 (183)
15 smart00588 NEUZ domain in neur 33.3 54 0.0012 25.8 3.3 44 105-152 28-71 (123)
16 PF06249 EutQ: Ethanolamine ut 32.7 30 0.00065 28.7 1.9 28 58-93 123-150 (152)
17 COG4766 EutQ Ethanolamine util 28.1 39 0.00084 28.6 1.8 29 58-94 146-174 (176)
18 PF11772 EpuA: DNA-directed RN 27.6 18 0.0004 24.3 -0.2 10 102-111 24-33 (47)
19 smart00512 Skp1 Found in Skp1 25.7 1.6E+02 0.0035 21.8 4.6 45 159-203 46-99 (104)
20 PF07469 DUF1518: Domain of un 24.8 40 0.00086 23.8 1.1 16 85-100 17-32 (58)
21 smart00362 RRM_2 RNA recogniti 24.0 1.3E+02 0.0028 18.7 3.4 37 166-202 12-58 (72)
22 PF14259 RRM_6: RNA recognitio 23.3 84 0.0018 20.8 2.5 38 166-203 11-59 (70)
23 COG1430 Uncharacterized conser 23.3 76 0.0016 25.5 2.6 30 39-70 82-111 (126)
24 KOG1439 RAB proteins geranylge 22.5 1.8E+02 0.0038 28.2 5.2 54 105-175 3-56 (440)
25 COG4050 Uncharacterized protei 22.1 1.4E+02 0.0029 24.5 3.8 41 52-96 59-101 (152)
26 PF08437 Glyco_transf_8C: Glyc 21.9 46 0.00099 23.0 0.9 12 36-47 11-22 (57)
27 PF15232 DUF4585: Domain of un 21.9 89 0.0019 23.2 2.4 22 55-76 19-40 (75)
28 cd02861 E_set_proteins_like E 21.6 1.1E+02 0.0023 21.8 2.9 33 39-71 23-56 (82)
29 PF00076 RRM_1: RNA recognitio 21.5 1.2E+02 0.0025 19.5 2.9 37 166-202 11-58 (70)
30 PTZ00162 DNA-directed RNA poly 21.4 1.8E+02 0.0039 24.2 4.6 36 115-155 135-170 (176)
31 smart00360 RRM RNA recognition 21.3 2.1E+02 0.0045 17.5 4.0 37 166-202 9-57 (71)
32 PF00575 S1: S1 RNA binding do 20.7 76 0.0016 21.5 1.9 34 93-130 29-62 (74)
33 TIGR01659 sex-lethal sex-letha 20.4 4E+02 0.0087 24.5 7.0 43 160-202 199-254 (346)
34 PF14829 GPAT_N: Glycerol-3-ph 20.1 79 0.0017 23.6 1.9 21 160-180 25-45 (77)
No 1
>PLN02373 soluble inorganic pyrophosphatase
Probab=100.00 E-value=5.2e-73 Score=477.02 Aligned_cols=175 Identities=91% Similarity=1.468 Sum_probs=171.8
Q ss_pred ccccCCcccCCCCCCCCCCCCCCeEEEEEEeCCCCCceEEEeccCCCeEeeeecccCCCCCCccccccCccCCCCCcceE
Q 028755 30 SMSRRSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDV 109 (204)
Q Consensus 30 ~~~~~~~~~spwhdip~~~~~p~~v~~VIEIPkgs~~KyE~d~~~g~i~~Dr~~~~~~~yP~NYGfIP~T~~~DgDPLDv 109 (204)
||+++...+||||+||++++.|+.|||||||||||++|||+|+++|.|++||++++++.||||||||||||++|||||||
T Consensus 1 ~~~~~~~~~~~whdi~~~~~~~~~v~vVIEIP~gs~~KyE~dk~~g~i~~Dr~l~~~~~yP~nYGfIP~T~~~DgDPLDv 80 (188)
T PLN02373 1 SMSRRSVAAHPWHDLEIGPGAPAIFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDV 80 (188)
T ss_pred CcccccccCCccccCCCCCCCCCEEEEEEEECCCCCeeEEEccCCCCEEEeeecccCCcCCcccccccccccCCCCccEE
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccCCCeeEEEEEEeeeEeeeeCCCCceEEEEEeCCCccccCCCCCCCCChhHHHHHHHHHHHcccCCCceEEeCc
Q 028755 110 LIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVND 189 (204)
Q Consensus 110 lvl~~~p~~~G~v~~vrviG~l~miD~ge~D~KiIaV~~~dp~~~~i~~i~Dl~~~~l~~I~~fF~~YK~~egK~v~~~g 189 (204)
|||++.|+.||++++||+||+|+|+|+||.|||||||+.+||+|+++++++|||++++++|+|||++||.++||+++++|
T Consensus 81 lvl~~~~~~~G~vi~~R~iG~l~m~D~ge~D~KiIaV~~~dp~~~~i~dl~Dl~~~~l~~I~~fF~~YK~legK~v~v~g 160 (188)
T PLN02373 81 LVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYTDIKELPPHRLAEIRRFFEDYKKNENKEVAVND 160 (188)
T ss_pred EEecCCCCCCceEEEEEEEEEEEEeeCCCCCCeEEEEECCCcccccCCChHHCCHHHHHHHHHHHHHhcccCCCeEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhhC
Q 028755 190 FLPASDAYNSVQQSM 204 (204)
Q Consensus 190 ~~~~~~A~~vI~~~~ 204 (204)
|.|+++|+++|++|+
T Consensus 161 ~~~~~~A~~~I~~~~ 175 (188)
T PLN02373 161 FLPAEAAIEAIQYSM 175 (188)
T ss_pred ccCHHHHHHHHHHHH
Confidence 999999999999984
No 2
>PRK00642 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=2.6e-69 Score=459.91 Aligned_cols=171 Identities=42% Similarity=0.684 Sum_probs=164.4
Q ss_pred CCcccCCCCCCCCCCCCCCeEEEEEEeCCCCCceEEEeccCCCeEeeeecccCCCCCCccccccCccC------------
Q 028755 34 RSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLC------------ 101 (204)
Q Consensus 34 ~~~~~spwhdip~~~~~p~~v~~VIEIPkgs~~KyE~d~~~g~i~~Dr~~~~~~~yP~NYGfIP~T~~------------ 101 (204)
.+..+|||||||++++.|+.|||||||||||++|||+|+++|.+++||++++++.||||||||||||+
T Consensus 5 ~~~~~spwhdi~~~~~~~~~vn~VIEIP~gs~~KyE~dk~~g~~~ldr~l~~~~~yP~nYGfIPqT~~dp~~~~~~~~~~ 84 (205)
T PRK00642 5 PLSRAHPWHGLSLGPDAPESVCCYIEITPFDTVKYELDKATGYLKVDRPQKFSNFCPALYGFIPRTYCGDLSGKLSGEQS 84 (205)
T ss_pred cccccCccccCCCCCCCCCEEEEEEEECCCCCeeEEEecCCCceEEeeecccCCcCCcccCcCcccccCccccccccccc
Confidence 56778999999999998999999999999999999999999999999999999999999999999995
Q ss_pred ------CCCCcceEEEeccccCCCeeE-EEEEEeeeEeeeeCCCCceEEEEEeCCCccccCCCCCCCCChhHHHHHHHHH
Q 028755 102 ------EDNDPLDVLIIMQEPVLPGCF-LRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFF 174 (204)
Q Consensus 102 ------~DgDPLDvlvl~~~p~~~G~v-~~vrviG~l~miD~ge~D~KiIaV~~~dp~~~~i~~i~Dl~~~~l~~I~~fF 174 (204)
|||||||||||++.|++||++ ++|||||+|+|+|+||+|||||||+.+||+|++|++++|||++++++|+|||
T Consensus 85 ~~~~~~gDgDPLDvlvl~~~~~~~G~v~i~~R~iG~l~miD~ge~D~KIiaV~~~Dp~~~~i~dl~Dl~~~~l~~I~~fF 164 (205)
T PRK00642 85 GREDIKGDGDPLDICVLTEKNITHGNILLQARPIGGLRMIDGGEADDKIIAVLEDDLVYGEIKDISECPGTLLDRLQHYF 164 (205)
T ss_pred ccccCCCCCCceEEEEecCCCcCCCceEEEEEEeEEEEEecCCCccceEEEEECCCCccccCCChHHCCHHHHHHHHHHH
Confidence 799999999999999999985 7999999999999999999999999999999999999999999999999999
Q ss_pred HHcccCCC---ceEEeCcccCHHHHHHHHHhhC
Q 028755 175 EDYKKNEN---KEVAVNDFLPASDAYNSVQQSM 204 (204)
Q Consensus 175 ~~YK~~eg---K~v~~~g~~~~~~A~~vI~~~~ 204 (204)
++||.++| |++.++||.++++|+++|++|+
T Consensus 165 ~~YK~legk~~k~~~~~g~~~~~~A~~vI~~~~ 197 (205)
T PRK00642 165 LTYKATPGELIKGVEIVGIYGKEEAQKVIQLAH 197 (205)
T ss_pred HHHcCcccCCCCeEEECCCcCHHHHHHHHHHHH
Confidence 99999995 4589999999999999999884
No 3
>PRK01250 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=1e-67 Score=441.19 Aligned_cols=166 Identities=42% Similarity=0.747 Sum_probs=161.9
Q ss_pred CCCCCCCCCCCCCCeEEEEEEeCCCCC-ceEEEeccCCCeEeeeecccCCCCCCccccccCccCCCCCcceEEEeccccC
Q 028755 39 HPWHDLEIGPGAPKIFNCVIEIGKGSK-VKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPV 117 (204)
Q Consensus 39 spwhdip~~~~~p~~v~~VIEIPkgs~-~KyE~d~~~g~i~~Dr~~~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~ 117 (204)
..||++|.+.+.|+.|||||||||||+ +|||+|+++|.+++||++++++.||||||||||||++||||||||||++.|+
T Consensus 1 ~~~~~l~~~~~~~~~v~vvvEIPkgs~~~KyE~d~~~g~~~~dR~l~~~~~yP~nYGfIP~T~~~DgDPLDvlvl~~~~~ 80 (176)
T PRK01250 1 MSLNKIPAGKDLPEDINVIIEIPANSDPIKYEVDKESGALFVDRFLYTAMFYPCNYGFIPHTLSLDGDPVDVLVVTPYPL 80 (176)
T ss_pred CChhhCCCCCCCCCEEEEEEEeCCCCCceeEEEecCCCCEEEeeccCCCCcCCcCcccCCCcccCCCCceEEEEecCCCC
Confidence 369999999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEeeeEeeeeCCCCceEEEEEeCC--CccccCCCCCCCCChhHHHHHHHHHHHcccCC-CceEEeCcccCHH
Q 028755 118 LPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE-NKEVAVNDFLPAS 194 (204)
Q Consensus 118 ~~G~v~~vrviG~l~miD~ge~D~KiIaV~~~--dp~~~~i~~i~Dl~~~~l~~I~~fF~~YK~~e-gK~v~~~g~~~~~ 194 (204)
.||++++||+||+|+|+|+||.|||||||+.+ ||+|+++++++|||++++++|+|||++||.++ ||++++.||.|++
T Consensus 81 ~~G~vv~~r~iG~l~m~D~ge~D~KiiaV~~~~~dp~~~~i~dl~dl~~~~l~eI~~fF~~YK~le~gk~~~v~g~~~~~ 160 (176)
T PRK01250 81 VPGSVIRCRPVGVLKMEDESGEDAKIIAVPHDKLSPEYDHIKDVNDLPELLKAQIKHFFEHYKDLEKGKWVKVEGWGGAE 160 (176)
T ss_pred CCceEEEEEEEEEEEeecCCCCCCeEEEEECCCCCccccccCChHHCCHHHHHHHHHHHHHhcCCCCCCCEEecCccCHH
Confidence 99999999999999999999999999999998 79999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHhhC
Q 028755 195 DAYNSVQQSM 204 (204)
Q Consensus 195 ~A~~vI~~~~ 204 (204)
+|+++|++|+
T Consensus 161 ~A~~~I~~~~ 170 (176)
T PRK01250 161 EAKAEIVEAI 170 (176)
T ss_pred HHHHHHHHHH
Confidence 9999999984
No 4
>PLN02707 Soluble inorganic pyrophosphatase
Probab=100.00 E-value=5.2e-67 Score=460.06 Aligned_cols=190 Identities=32% Similarity=0.501 Sum_probs=176.0
Q ss_pred ccCCCCCCCCCceeeeeccccCCcccCCCCCCCCCCCCCCeEEEEEEeCCCCCceEEEecc--CCCeEeeeecccCCCCC
Q 028755 13 PVSQPPAHPPLNERILSSMSRRSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKK--SGLIMVDRVLYSSVVYP 90 (204)
Q Consensus 13 ~~~~~~~~~~~~~r~~~~~~~~~~~~spwhdip~~~~~p~~v~~VIEIPkgs~~KyE~d~~--~g~i~~Dr~~~~~~~yP 90 (204)
...++|..++.+||+++ ....+..+|||||||++ ..++.|||||||||||++|||+|++ .+.|+|||.+...+.||
T Consensus 33 ~~~~~G~~~t~~~r~~~-~~~~g~~~spwHdIpl~-~~~~~vn~VVEIPrgs~~KyEidk~~~~npi~qD~~~g~lr~yP 110 (267)
T PLN02707 33 AVEEEGEAETLDYRVFF-SDGSGKKVSPWHDIPLH-AGDGTFNFVVEIPKETSAKMEVATDEPFTPIKQDTKKGKLRDYP 110 (267)
T ss_pred eEEeecCCCCcceEEEE-ECCCCCccCchhcCCCC-CCCCEEEEEEEECCCCceeEEECccCCCCCEEEeeecCceEECC
Confidence 56789999999999986 34467779999999999 5689999999999999999999977 56899999988888888
Q ss_pred C----ccccccCcc-------------CCCCCcceEEEeccccCCCeeEEEEEEeeeEeeeeCCCCceEEEEEeCCCccc
Q 028755 91 H----NYGFIPRTL-------------CEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEY 153 (204)
Q Consensus 91 ~----NYGfIP~T~-------------~~DgDPLDvlvl~~~p~~~G~v~~vrviG~l~miD~ge~D~KiIaV~~~dp~~ 153 (204)
+ ||||||||| +|||||||||||++.++.||++++|||||+|+|+|+||+|||||||+++||+|
T Consensus 111 ~~~~~NYGfIPqTwedp~~~~~~~~~l~gDgDPLDVlvi~~~~~~pG~Vv~vR~IGvL~miDeGE~D~KIIaV~~~Dp~~ 190 (267)
T PLN02707 111 YNINWNYGLLPQTWEDPTHANPEVEGAFGDNDPVDVVEIGERAAKIGEVLKVKPLGVLAMIDEGELDWKVVAISADDPKA 190 (267)
T ss_pred CcCccccccccccccCcccccccccccCCCCCccEEEEecCCCcCCccEEEEEEeEEEEEEeCCCCCCEEEEEECCCCcc
Confidence 7 999999997 48999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCChhH---HHHHHHHHHHcccCCCceEEe----CcccCHHHHHHHHHhhC
Q 028755 154 RHYNDIKELPPHR---LAEIRRFFEDYKKNENKEVAV----NDFLPASDAYNSVQQSM 204 (204)
Q Consensus 154 ~~i~~i~Dl~~~~---l~~I~~fF~~YK~~egK~v~~----~g~~~~~~A~~vI~~~~ 204 (204)
++++|++||+++. +++|+|||++||.++||++++ ++|.|+++|+++|++|+
T Consensus 191 ~~i~di~Dv~~~~pg~l~~I~~fF~~YK~~eGK~~n~~~~~~~~~~~~~A~~vI~e~~ 248 (267)
T PLN02707 191 SLVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPANKFGLDNKPMDKDYALKVIEETN 248 (267)
T ss_pred cccCChhHhhhhhhhHHHHHHHHHHHhcCCCCCceeeccccCCcCCHHHHHHHHHHHH
Confidence 9999999998765 899999999999999999876 57999999999999984
No 5
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=100.00 E-value=1.8e-64 Score=414.31 Aligned_cols=153 Identities=54% Similarity=0.927 Sum_probs=149.8
Q ss_pred CeEEEEEEeCCCCCceEEEeccCCCeEeeeecccCCCCCCccccccCccCCCCCcceEEEeccccCCCeeEEEEEEeeeE
Q 028755 52 KIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLM 131 (204)
Q Consensus 52 ~~v~~VIEIPkgs~~KyE~d~~~g~i~~Dr~~~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~~G~v~~vrviG~l 131 (204)
+.|||||||||||++|||+|+++|.|++||++++++.||+|||||||||++||||||||||++.|+.||++++||+||+|
T Consensus 1 ~~v~vvIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~nYGfiP~T~~~DgDPlDvlvl~~~~~~~G~~~~~r~iG~l 80 (155)
T cd00412 1 EVVNVVIEIPKGSNAKYEIDKETGPIKVDRFLYSSMGYPWNYGFIPQTLEDDGDPLDVLVIGEEPLFPGSVIRVRPLGVL 80 (155)
T ss_pred CEEEEEEEECCCCceeEEEccCCCceeeccccccCCcCcccccccCCcccCCCCceEEEEEcCCCCCCeeEEEEEEEEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCceEEEEEeCCCccccCCCCCCCCChhHHHHHHHHHHHcccCCC-ceEEeCcccCHHHHHHHHHhhC
Q 028755 132 PMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNEN-KEVAVNDFLPASDAYNSVQQSM 204 (204)
Q Consensus 132 ~miD~ge~D~KiIaV~~~dp~~~~i~~i~Dl~~~~l~~I~~fF~~YK~~eg-K~v~~~g~~~~~~A~~vI~~~~ 204 (204)
+|+|+||.|||||||+.+||+|+++++++|||++++++|+|||++||.++| |++++.||.|+++|+++|++|+
T Consensus 81 ~m~D~ge~D~KiiaV~~~dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le~~k~~~~~g~~~~~~A~~~I~~~~ 154 (155)
T cd00412 81 KMIDEGETDWKVIAVPVDDPRYSHINDISDVPPHLLDEIKHFFEHYKDLEGKKEVKVAGWKDKEEALKIIKESI 154 (155)
T ss_pred EeccCCCccceEEEeeCCCcccccCCChHHCCHHHHHHHHHHHHHhcccCCCCceEECcCcCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999997 7899999999999999999985
No 6
>PRK02230 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=4.6e-63 Score=415.31 Aligned_cols=153 Identities=46% Similarity=0.722 Sum_probs=149.4
Q ss_pred CeEEEEEEeCCCCCceEEEeccCCCeEeeeecccCCCCCCccccccCccCCCCCcceEEEeccccCCCeeEEEEEEeeeE
Q 028755 52 KIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLM 131 (204)
Q Consensus 52 ~~v~~VIEIPkgs~~KyE~d~~~g~i~~Dr~~~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~~G~v~~vrviG~l 131 (204)
+.||||||||+||++|||+|+++|.|++||++++++.||+|||||||||++||||||||||++.|+.||++++||+||+|
T Consensus 3 ~~vnvvIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DGDPLDvlvl~~~~~~pG~vi~~r~IGvl 82 (184)
T PRK02230 3 KIIEVTIEIPKGSNIKYEYDRKTNKIVVDRILRGDFVYPANYGFIKEALDWDGDELDVLVYSDQKFLPGTVLNARIIGAM 82 (184)
T ss_pred cEEEEEEEECCCCCeeEEEecCCCCEEEEeecCCCCCCCcCcccCCCccCCCCCceEEEEECCCCCCCccEEEEEEEEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCceEEEEEeCCCccccCCCCCCCCChhHHHHHHHHHHHcccCCCceE-EeCcccCHHHHHHHHHhhC
Q 028755 132 PMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEV-AVNDFLPASDAYNSVQQSM 204 (204)
Q Consensus 132 ~miD~ge~D~KiIaV~~~dp~~~~i~~i~Dl~~~~l~~I~~fF~~YK~~egK~v-~~~g~~~~~~A~~vI~~~~ 204 (204)
+|+|+||.|||||||+.+||+|++|++++|||++++++|+|||++||.++||++ +++||.|+++|+++|++|+
T Consensus 83 ~m~D~ge~D~KIIaV~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~legk~~~~v~g~~~~~~A~~~I~~~~ 156 (184)
T PRK02230 83 KMIDDGETDTKLIAVHDDDYRLDHINSLKDLPQHWLDEIEYFFSNYKNWKRKGITKVKGFEDEKWALKEYKECV 156 (184)
T ss_pred EeccCCCcCcEEEEEECCCCChhhcCChHHCCHHHHHHHHHHHHHhcCCCCCCeEEeCCccCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998876 5999999999999999984
No 7
>PF00719 Pyrophosphatase: Inorganic pyrophosphatase; InterPro: IPR008162 Inorganic pyrophosphatase (3.6.1.1 from EC) (PPase) [, ] is the enzyme responsible for the hydrolysis of pyrophosphate (PPi) which is formed principally as the product of the many biosynthetic reactions that utilise ATP. All known PPases require the presence of divalent metal cations, with magnesium conferring the highest activity. Among other residues, a lysine has been postulated to be part of or close to the active site. PPases have been sequenced from bacteria such as Escherichia coli (homohexamer), Bacillus PS3 (Thermophilic bacterium PS-3) and Thermus thermophilus, from the archaebacteria Thermoplasma acidophilum, from fungi (homodimer), from a plant, and from bovine retina. In yeast, a mitochondrial isoform of PPase has been characterised which seems to be involved in energy production and whose activity is stimulated by uncouplers of ATP synthesis. The sequences of PPases share some regions of similarities, among which is a region that contains three conserved aspartates that are involved in the binding of cations.; GO: 0000287 magnesium ion binding, 0004427 inorganic diphosphatase activity, 0006796 phosphate-containing compound metabolic process, 0005737 cytoplasm; PDB: 2UXS_A 1WCF_A 1SXV_A 3I4Q_A 2PRD_A 2IHP_B 1PYP_A 2IK7_A 2IK4_A 1E9G_A ....
Probab=100.00 E-value=3.2e-62 Score=401.12 Aligned_cols=150 Identities=53% Similarity=0.903 Sum_probs=141.9
Q ss_pred EEEEEeCCCCCceEEEeccCCCeEeeeecccCCCCCCccccccCccCCCCCcceEEEeccccCCCeeEEEEEEeeeEeee
Q 028755 55 NCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMI 134 (204)
Q Consensus 55 ~~VIEIPkgs~~KyE~d~~~g~i~~Dr~~~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~~G~v~~vrviG~l~mi 134 (204)
||||||||||++|||+|+++|.+++||++++++.||+|||||||||++||||||||||++.|+.||++++||+||+|+|+
T Consensus 1 n~viEIP~gs~~KyE~d~~~~~~~idr~~~~~~~yP~NYGfIP~T~~~DGDPLDvlvl~~~~~~~G~v~~~r~iG~l~m~ 80 (156)
T PF00719_consen 1 NVVIEIPKGSRAKYEYDKETGLNPIDRPLYSSMPYPFNYGFIPQTLGGDGDPLDVLVLGSEPLPPGSVVRVRVIGVLKMI 80 (156)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEE-SSSBS-SSEEEEETTEEBTTSSCEEEEEESSS---TTEEEEEEEEEEEEEE
T ss_pred CEEEEECCCCCeeEEECCCCCCccceeccccCcCCccccccccceecCCCCeeeEEEEecccccceeEEEEeceEEEEEe
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceEEEEEeCCCccccCCCCCCCCChhHHHHHHHHHHHcccC-CCceEEeCcccCHHHHHHHHHhhC
Q 028755 135 DQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKN-ENKEVAVNDFLPASDAYNSVQQSM 204 (204)
Q Consensus 135 D~ge~D~KiIaV~~~dp~~~~i~~i~Dl~~~~l~~I~~fF~~YK~~-egK~v~~~g~~~~~~A~~vI~~~~ 204 (204)
|+||+|||||||+.+||+|+++++++|++++.+++|+|||++||.+ +||++.+++|.++++|+++|++|+
T Consensus 81 D~ge~D~KiiaV~~~dp~~~~i~dl~dl~~~~~~~i~~fF~~YK~l~~~k~~~~~~~~~~~~A~~~i~~~~ 151 (156)
T PF00719_consen 81 DDGERDDKIIAVPVDDPRYDDIKDLEDLPPHLLDEIEHFFRNYKDLEENKWVEVGGWEDAEEALKVIKEAH 151 (156)
T ss_dssp ETTEEEEEEEEEETTCGGGTTHHSGGGSSHHHHHHHHHHHHHTTTTSTTEEEEEEEEEEHHHHHHHHHHHH
T ss_pred eCCCCceEEEEeccCCcccCCcCcHHHhChhHHHHHHHHHHHhcCcCCCCeEEeCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 799999999999999999999984
No 8
>COG0221 Ppa Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=9.8e-61 Score=397.47 Aligned_cols=165 Identities=50% Similarity=0.863 Sum_probs=161.6
Q ss_pred CCCCCCCCCCCCCCeEEEEEEeCCCCCceEEEeccCCCeEeeeecccCCCCCCccccccCccCCCCCcceEEEeccccCC
Q 028755 39 HPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVL 118 (204)
Q Consensus 39 spwhdip~~~~~p~~v~~VIEIPkgs~~KyE~d~~~g~i~~Dr~~~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~ 118 (204)
|+||+||++++. ..+||+||||+||++|||+|+++|.+.+||++++++.||+|||||||||++|||||||||+++.|+.
T Consensus 1 ~~~~~~~~~~~~-~~i~vviEIP~~s~~KyE~dk~~~~~~vdR~l~~~~~YP~NYGfiP~Tl~~DGDPlDvlVi~~~p~~ 79 (171)
T COG0221 1 MDLHKIPAGPDD-EDINVVIEIPKGSNIKYEVDKETGRLLVDRPLKTPMGYPVNYGFIPNTLSDDGDPLDVLVIGEEPLA 79 (171)
T ss_pred CCccccCCCCCc-ceEEEEEeccCCCccceEEeeecCceeeeecCCCCCcCCccccccCCcccCCCCceEEEEEcCcCCC
Confidence 689999999887 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEeeeEeeeeCCCCceEEEEEeCCCccccCCCCCCCCChhHHHHHHHHHHHcccCC-CceEEeCcccCHHHHH
Q 028755 119 PGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE-NKEVAVNDFLPASDAY 197 (204)
Q Consensus 119 ~G~v~~vrviG~l~miD~ge~D~KiIaV~~~dp~~~~i~~i~Dl~~~~l~~I~~fF~~YK~~e-gK~v~~~g~~~~~~A~ 197 (204)
|||+++||+||+|+|+|+||.|||||||+..||+|+++++++|+|.+++++|+|||++||.++ ||++++.||+|+++|+
T Consensus 80 pG~vi~~r~iG~l~m~D~~e~D~Kviav~~~dp~~~~i~di~d~~~~~~~~i~~ffe~yK~le~~k~~~~~gw~~~~~A~ 159 (171)
T COG0221 80 PGCVIQARPIGVLKMIDEGEKDDKVIAVPKLDPRYEHIKDISDLPEHLLDEIQHFFETYKDLEKGKWVKVEGWEDAEEAK 159 (171)
T ss_pred ceeEEEEEEEEEEEEeeCCCcceEEEEecCCCcchhhccchhHHHHHHHHHHHHHHHHHHhcCCCcEEEeccccCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 5899999999999999
Q ss_pred HHHHhhC
Q 028755 198 NSVQQSM 204 (204)
Q Consensus 198 ~vI~~~~ 204 (204)
++|++|+
T Consensus 160 ~~i~~~~ 166 (171)
T COG0221 160 KEIKEAI 166 (171)
T ss_pred HHHHHHH
Confidence 9999984
No 9
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=100.00 E-value=9e-57 Score=390.85 Aligned_cols=190 Identities=38% Similarity=0.583 Sum_probs=168.5
Q ss_pred cCCCCCCCCCceeeeeccccCCcccCCCCCCCCCCCCCCeEEEEEEeCCCCCceEEEecc-----------CCCeEeeee
Q 028755 14 VSQPPAHPPLNERILSSMSRRSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKK-----------SGLIMVDRV 82 (204)
Q Consensus 14 ~~~~~~~~~~~~r~~~~~~~~~~~~spwhdip~~~~~p~~v~~VIEIPkgs~~KyE~d~~-----------~g~i~~Dr~ 82 (204)
..+.|+.++++||+++ ....+..+|||||||+..+....||||+||||++++|+|+.++ +|.++.+|.
T Consensus 5 t~e~g~~~s~~~rvy~-~~~~~~~iS~fhdipl~a~~~~~~nmvvEiPrwtnak~EIs~k~~~~pikqD~KkGklR~v~n 83 (279)
T KOG1626|consen 5 TVETGKKYSLDYRVYF-PKLNGRIISPFHDIPLAAHPWHDLNMVVEIPRWTNAKMEISKKEPFNPIKQDKKKGKLRFVRN 83 (279)
T ss_pred eeeccccCCccceeee-cCCCCccccccccCccccCccccEeecccccceeeeEEEEeccCCCCcceeeccCCceEEEEe
Confidence 4567888999999995 4445668999999999999889999999999999999999854 466777788
Q ss_pred cccCCCCCCccccccCccC------------CCCCcceEEEeccccCCCeeEEEEEEeeeEeeeeCCCCceEEEEEeCCC
Q 028755 83 LYSSVVYPHNYGFIPRTLC------------EDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADD 150 (204)
Q Consensus 83 ~~~~~~yP~NYGfIP~T~~------------~DgDPLDvlvl~~~p~~~G~v~~vrviG~l~miD~ge~D~KiIaV~~~d 150 (204)
+|.+..||||||||||||+ |||||||||+||+.+..+|++++||+||+|+||||||+|||||||+++|
T Consensus 84 ~fp~~gYiwNYGalPqTwedP~~~~~~t~~~gDnDPiDV~eIg~~~~~~G~vl~vKvLG~malIDeGE~DwKiIAIdvnD 163 (279)
T KOG1626|consen 84 LFPYKGYIWNYGALPQTWEDPNHVDPETKAKGDNDPIDVLEIGQEPVLPGCVLQVKVLGLMALIDEGETDWKIIAIDVND 163 (279)
T ss_pred cccccccccccccCcccccCCCcccccccccCCCCcceeeEecccccccccEEEEEeeeeeecccCCCccceEEEEECCC
Confidence 9999999999999999997 5789999999999999999999999999999999999999999999999
Q ss_pred ccccCCCC---CCCCChhHHHHHHHHHHHcccCCCce----EEeCcccCHHHHHHHHHhhC
Q 028755 151 PEYRHYND---IKELPPHRLAEIRRFFEDYKKNENKE----VAVNDFLPASDAYNSVQQSM 204 (204)
Q Consensus 151 p~~~~i~~---i~Dl~~~~l~~I~~fF~~YK~~egK~----v~~~g~~~~~~A~~vI~~~~ 204 (204)
|.++.++| ++.++|++|+++++|||.||.++||. +..+.+.+++.|.++|++|+
T Consensus 164 P~A~~~ndi~DV~~~~Pg~L~~tr~wFr~YKiPdGKpeN~faf~~~f~n~~~A~~iIk~t~ 224 (279)
T KOG1626|consen 164 PLASEYNDIEDVEKLFPGLLEATRRWFRDYKIPDGKPENKFAFVGDFLNKKFALDIIKETH 224 (279)
T ss_pred cchhhhccHHHHHHhCcchHHHHHHHHHHcCCCCCCCccchhhcccccChHHHHHHHHHHH
Confidence 95555554 55568999999999999999777764 55678999999999999874
No 10
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=94.96 E-value=0.028 Score=50.32 Aligned_cols=62 Identities=34% Similarity=0.484 Sum_probs=54.6
Q ss_pred cCCCcccCCCCCCCCCceeeeeccccCCcccCCCCCCCCCCCCCCeEEEEEEeC-CCCCceEE
Q 028755 8 TSSKTPVSQPPAHPPLNERILSSMSRRSVAAHPWHDLEIGPGAPKIFNCVIEIG-KGSKVKYE 69 (204)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~spwhdip~~~~~p~~v~~VIEIP-kgs~~KyE 69 (204)
+-++-+..-+.....++.|++++|.+....+|+||++......|..+|+++||. +++.++++
T Consensus 8 ~g~~~s~~~rvy~~~~~~~~iS~fhdipl~a~~~~~~nmvvEiPrwtnak~EIs~k~~~~pik 70 (279)
T KOG1626|consen 8 TGKKYSLDYRVYFPKLNGRIISPFHDIPLAAHPWHDLNMVVEIPRWTNAKMEISKKEPFNPIK 70 (279)
T ss_pred ccccCCccceeeecCCCCccccccccCccccCccccEeecccccceeeeEEEEeccCCCCcce
Confidence 334446777888899999999999999999999999999999999999999999 78888776
No 11
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=42.82 E-value=18 Score=25.70 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=21.0
Q ss_pred cccccCccCCCCCcceEEEeccccCCCeeEEEEEEeee
Q 028755 93 YGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGL 130 (204)
Q Consensus 93 YGfIP~T~~~DgDPLDvlvl~~~p~~~G~v~~vrviG~ 130 (204)
=||||.+-..++ ..+.+|+.+.|+++.+
T Consensus 30 ~Gfl~~~~~~~~----------~~~~~Gq~v~~~V~~v 57 (74)
T cd05694 30 TGFLPKKDAGNF----------SKLKVGQLLLCVVEKV 57 (74)
T ss_pred EEEEEHHHCCcc----------cccCCCCEEEEEEEEE
Confidence 488887754433 5688999999999864
No 12
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=40.58 E-value=28 Score=24.83 Aligned_cols=22 Identities=9% Similarity=0.149 Sum_probs=15.8
Q ss_pred eEEEeccccCCCeeEEEEEEee
Q 028755 108 DVLIIMQEPVLPGCFLRAKAIG 129 (204)
Q Consensus 108 Dvlvl~~~p~~~G~v~~vrviG 129 (204)
..||+++.|+.+|+.+++|+.-
T Consensus 30 ~giVFS~rPl~~~E~~~v~I~~ 51 (69)
T PF07177_consen 30 NGIVFSSRPLRIGEKFEVRIDE 51 (69)
T ss_dssp S-EEEESS-B-TT-EEEEEEEE
T ss_pred ceEEEecCCccCCCEEEEEEEe
Confidence 4689999999999999999853
No 13
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=39.76 E-value=13 Score=33.17 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=22.8
Q ss_pred ccccCCCCCCCCChhHHHHHHHHHHHc
Q 028755 151 PEYRHYNDIKELPPHRLAEIRRFFEDY 177 (204)
Q Consensus 151 p~~~~i~~i~Dl~~~~l~~I~~fF~~Y 177 (204)
|.|--++|+++||.-+-+.+++||+.-
T Consensus 237 pYy~~~~~~~~lp~~l~~~lrqwf~~~ 263 (266)
T cd01460 237 PYYVIVRDLNQLPSVLSDALRQWFELV 263 (266)
T ss_pred CeEEEecChhHhHHHHHHHHHHHHHHH
Confidence 445668999999999999999999854
No 14
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=36.50 E-value=19 Score=30.85 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=28.6
Q ss_pred eEEEEEeCCCccccCCCCCCCCChhHHHHHHHHHHHccc
Q 028755 141 DKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKK 179 (204)
Q Consensus 141 ~KiIaV~~~dp~~~~i~~i~Dl~~~~l~~I~~fF~~YK~ 179 (204)
.|.||...-|. -+.+.|++||....++.+.+|...||.
T Consensus 108 SR~La~~s~d~-~d~~ddlsdL~a~e~eal~eWE~~fk~ 145 (183)
T KOG1110|consen 108 SRGLAKMSFDL-SDETDDLSDLTAEELEALNEWETKFKA 145 (183)
T ss_pred HHHHHhcccch-hhccccccccCHHHHHHHHHHHHHHhh
Confidence 34444444333 456789999999999999999999985
No 15
>smart00588 NEUZ domain in neuralized proteins.
Probab=33.27 E-value=54 Score=25.80 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=29.3
Q ss_pred CcceEEEeccccCCCeeEEEEEEeeeEeeeeCCCCceEEEEEeCCCcc
Q 028755 105 DPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPE 152 (204)
Q Consensus 105 DPLDvlvl~~~p~~~G~v~~vrviG~l~miD~ge~D~KiIaV~~~dp~ 152 (204)
+--+.+|+++.|+.+|+.+.+|+.-.-..- .| .==+++-..||.
T Consensus 28 ~f~~givFS~rPl~~~E~~~v~i~~~~~~w-~G---~l~~G~Ts~dP~ 71 (123)
T smart00588 28 DFCNALVFSARPLRINELFEVKIEKVVRKW-SG---ALRFGVTTCDPA 71 (123)
T ss_pred CcCceEEecCCCCcCCCEEEEEEEEecCCc-cC---ceEEEEecCCcc
Confidence 346889999999999999999987432111 00 112466666775
No 16
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=32.74 E-value=30 Score=28.68 Aligned_cols=28 Identities=36% Similarity=0.574 Sum_probs=14.8
Q ss_pred EEeCCCCCceEEEeccCCCeEeeeecccCCCCCCcc
Q 028755 58 IEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNY 93 (204)
Q Consensus 58 IEIPkgs~~KyE~d~~~g~i~~Dr~~~~~~~yP~NY 93 (204)
+=||+||+..|.-. |..+.-...||+||
T Consensus 123 i~iPkGs~I~fst~--------~~a~~~Yv~yPa~W 150 (152)
T PF06249_consen 123 IFIPKGSTITFSTP--------DYARFFYVTYPANW 150 (152)
T ss_dssp EEE-TT-EEEEEEE--------EEEEEEEEEESTT-
T ss_pred EEECCCCEEEEecC--------CCEEEEEEECCCcc
Confidence 34788877777532 22333346889886
No 17
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=28.10 E-value=39 Score=28.58 Aligned_cols=29 Identities=38% Similarity=0.663 Sum_probs=19.4
Q ss_pred EEeCCCCCceEEEeccCCCeEeeeecccCCCCCCccc
Q 028755 58 IEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYG 94 (204)
Q Consensus 58 IEIPkgs~~KyE~d~~~g~i~~Dr~~~~~~~yP~NYG 94 (204)
|=|||||..++-. +|. -|++ ...||+||-
T Consensus 146 ifiPKgssIefst---~ge---a~fl--yvtyPanWq 174 (176)
T COG4766 146 IFIPKGSSIEFST---TGE---AKFL--YVTYPANWQ 174 (176)
T ss_pred EEecCCCeEEEec---cce---EEEE--EEEcccccc
Confidence 4489999887754 332 2444 468999974
No 18
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=27.62 E-value=18 Score=24.33 Aligned_cols=10 Identities=40% Similarity=0.813 Sum_probs=8.4
Q ss_pred CCCCcceEEE
Q 028755 102 EDNDPLDVLI 111 (204)
Q Consensus 102 ~DgDPLDvlv 111 (204)
|||+|.||+-
T Consensus 24 G~G~p~~vf~ 33 (47)
T PF11772_consen 24 GDGNPFDVFS 33 (47)
T ss_pred CCCCHHHhCC
Confidence 8999999863
No 19
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=25.67 E-value=1.6e+02 Score=21.82 Aligned_cols=45 Identities=4% Similarity=0.185 Sum_probs=31.6
Q ss_pred CCCCChhHHHHHHHHHHHcccCCCce---EEeCcc------cCHHHHHHHHHhh
Q 028755 159 IKELPPHRLAEIRRFFEDYKKNENKE---VAVNDF------LPASDAYNSVQQS 203 (204)
Q Consensus 159 i~Dl~~~~l~~I~~fF~~YK~~egK~---v~~~g~------~~~~~A~~vI~~~ 203 (204)
+..++...++.|.+|..+++...+.. ..+..| .+.+.+.++|..|
T Consensus 46 l~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AA 99 (104)
T smart00512 46 LPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAA 99 (104)
T ss_pred CCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHH
Confidence 45677899999999999988754321 112334 5777888888776
No 20
>PF07469 DUF1518: Domain of unknown function (DUF1518) ; InterPro: IPR010011 This domain, which is usually found tandemly repeated, is found various receptor co-activating proteins.; GO: 0005634 nucleus
Probab=24.79 E-value=40 Score=23.84 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=12.4
Q ss_pred cCCCCCCccccccCcc
Q 028755 85 SSVVYPHNYGFIPRTL 100 (204)
Q Consensus 85 ~~~~yP~NYGfIP~T~ 100 (204)
.-+.||-|||..+|+=
T Consensus 17 qqFpyppnyGm~qq~d 32 (58)
T PF07469_consen 17 QQFPYPPNYGMSQQPD 32 (58)
T ss_pred cccccCCCCCccCCCC
Confidence 3467888999998763
No 21
>smart00362 RRM_2 RNA recognition motif.
Probab=23.98 E-value=1.3e+02 Score=18.69 Aligned_cols=37 Identities=19% Similarity=0.388 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcccCC------C----ceEEeCcccCHHHHHHHHHh
Q 028755 166 RLAEIRRFFEDYKKNE------N----KEVAVNDFLPASDAYNSVQQ 202 (204)
Q Consensus 166 ~l~~I~~fF~~YK~~e------g----K~v~~~g~~~~~~A~~vI~~ 202 (204)
..++|++||+.|-... . +...+..|.+.+.|.+.++.
T Consensus 12 ~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~ 58 (72)
T smart00362 12 TEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEA 58 (72)
T ss_pred CHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 4578899999885321 1 24556678888888888753
No 22
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=23.31 E-value=84 Score=20.77 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcccCC------C-----ceEEeCcccCHHHHHHHHHhh
Q 028755 166 RLAEIRRFFEDYKKNE------N-----KEVAVNDFLPASDAYNSVQQS 203 (204)
Q Consensus 166 ~l~~I~~fF~~YK~~e------g-----K~v~~~g~~~~~~A~~vI~~~ 203 (204)
..+.|.+||..|-..+ + +...+..+.+.++|.++++..
T Consensus 11 ~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~ 59 (70)
T PF14259_consen 11 TEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELL 59 (70)
T ss_dssp -HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHC
Confidence 4588999999884321 1 345667899999999988753
No 23
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=23.28 E-value=76 Score=25.53 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=18.9
Q ss_pred CCCCCCCCCCCCCCeEEEEEEeCCCCCceEEE
Q 028755 39 HPWHDLEIGPGAPKIFNCVIEIGKGSKVKYEL 70 (204)
Q Consensus 39 spwhdip~~~~~p~~v~~VIEIPkgs~~KyE~ 70 (204)
-||+.-|..+ +..++.|+|.|+|..+++-+
T Consensus 82 ~P~~~~~~~~--~~~~~yvLEl~~G~~~~~~i 111 (126)
T COG1430 82 VPWSTYPCKS--YGPVRYVLELPAGWAARLGI 111 (126)
T ss_pred cccccCCCCC--CCCccEEEEecCCchhhcCC
Confidence 3555544432 23348899999998876644
No 24
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=22.48 E-value=1.8e+02 Score=28.24 Aligned_cols=54 Identities=13% Similarity=0.235 Sum_probs=39.3
Q ss_pred CcceEEEeccccCCCeeEEEEEEeeeEeeeeCCCCceEEEEEeCCCccccCCCCCCCCChhHHHHHHHHHH
Q 028755 105 DPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFE 175 (204)
Q Consensus 105 DPLDvlvl~~~p~~~G~v~~vrviG~l~miD~ge~D~KiIaV~~~dp~~~~i~~i~Dl~~~~l~~I~~fF~ 175 (204)
++-||+|||.. ..+|++=|+|..- .-|+|-++.+|-.=+...++. +++|..||+
T Consensus 3 eeyDvivlGTg------l~ecilS~~Ls~~-----gkkVLhiDrN~yYG~~saslt------l~ql~~~f~ 56 (440)
T KOG1439|consen 3 EEYDVIVLGTG------LTECILSGALSVD-----GKKVLHIDRNDYYGGESASLT------LEQLYKKFK 56 (440)
T ss_pred CceeEEEEcCC------chhheeeeeeeec-----CcEEEEEeCCCCCCcccccee------HHHHHHHhc
Confidence 45899999974 6678888888762 367998888765334444444 789999998
No 25
>COG4050 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.14 E-value=1.4e+02 Score=24.48 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=25.3
Q ss_pred CeEEEEEEeCCCCCceEEEeccCCC-eE-eeeecccCCCCCCccccc
Q 028755 52 KIFNCVIEIGKGSKVKYELDKKSGL-IM-VDRVLYSSVVYPHNYGFI 96 (204)
Q Consensus 52 ~~v~~VIEIPkgs~~KyE~d~~~g~-i~-~Dr~~~~~~~yP~NYGfI 96 (204)
+.=.+-||+|.|-+.+|.+- |. |. -|.-.- --..|++||||
T Consensus 59 GLkYAAvEVPsGVRGRmali---GPLIEeadAAIi-~~~~p~~FGCi 101 (152)
T COG4050 59 GLKYAAVEVPSGVRGRMALI---GPLIEEADAAII-VEEAPFGFGCI 101 (152)
T ss_pred cceeeEEecCCCccceeeee---ehhhhhcceeeE-eccCCccccee
Confidence 45578889999999999763 32 11 111110 12347899998
No 26
>PF08437 Glyco_transf_8C: Glycosyl transferase family 8 C-terminal; InterPro: IPR013645 This domain is found at the C terminus of bacterial glucosyltransferase and galactosyltransferase proteins. ; GO: 0008918 lipopolysaccharide 3-alpha-galactosyltransferase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=21.92 E-value=46 Score=22.97 Aligned_cols=12 Identities=25% Similarity=0.717 Sum_probs=10.0
Q ss_pred cccCCCCCCCCC
Q 028755 36 VAAHPWHDLEIG 47 (204)
Q Consensus 36 ~~~spwhdip~~ 47 (204)
...|||.|+|+-
T Consensus 11 ~~~SPWk~~pl~ 22 (57)
T PF08437_consen 11 YKNSPWKDIPLL 22 (57)
T ss_pred HHcCCCCCCCCc
Confidence 457999999985
No 27
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=21.89 E-value=89 Score=23.19 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCceEEEeccCCC
Q 028755 55 NCVIEIGKGSKVKYELDKKSGL 76 (204)
Q Consensus 55 ~~VIEIPkgs~~KyE~d~~~g~ 76 (204)
.++||.|+--+.|.=+|+++|.
T Consensus 19 Yy~vd~P~Qp~~k~lfDPETGq 40 (75)
T PF15232_consen 19 YYVVDAPVQPKTKTLFDPETGQ 40 (75)
T ss_pred EEEEecCCCcceeeeecCCCCc
Confidence 4788999999999999999996
No 28
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=21.62 E-value=1.1e+02 Score=21.76 Aligned_cols=33 Identities=15% Similarity=0.485 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCCCCeEEEEEEeCCCC-CceEEEe
Q 028755 39 HPWHDLEIGPGAPKIFNCVIEIGKGS-KVKYELD 71 (204)
Q Consensus 39 spwhdip~~~~~p~~v~~VIEIPkgs-~~KyE~d 71 (204)
+.|..+++.....+.+.+.+++|.|+ .=||-+|
T Consensus 23 n~W~~~~m~~~~~G~w~~~~~l~~G~y~Ykf~vd 56 (82)
T cd02861 23 NNWNAIPMEREGDGLWVVTVELRPGRYEYKFVVD 56 (82)
T ss_pred CCCCcccCEECCCCcEEEEEeCCCCcEEEEEEEC
Confidence 46776777665557899999999988 5666654
No 29
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=21.51 E-value=1.2e+02 Score=19.52 Aligned_cols=37 Identities=30% Similarity=0.469 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcccCC---------C--ceEEeCcccCHHHHHHHHHh
Q 028755 166 RLAEIRRFFEDYKKNE---------N--KEVAVNDFLPASDAYNSVQQ 202 (204)
Q Consensus 166 ~l~~I~~fF~~YK~~e---------g--K~v~~~g~~~~~~A~~vI~~ 202 (204)
..++|+++|..|-... + +...+..|.+.++|.+++++
T Consensus 11 t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~ 58 (70)
T PF00076_consen 11 TEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEE 58 (70)
T ss_dssp SHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHH
Confidence 4678999999987652 1 22456678888888888874
No 30
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional
Probab=21.44 E-value=1.8e+02 Score=24.24 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=23.7
Q ss_pred ccCCCeeEEEEEEeeeEeeeeCCCCceEEEEEeCCCccccC
Q 028755 115 EPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRH 155 (204)
Q Consensus 115 ~p~~~G~v~~vrviG~l~miD~ge~D~KiIaV~~~dp~~~~ 155 (204)
..+..|+.+|+|++|+- .|++ +-++++ ...+|..+.
T Consensus 135 ~~i~~g~~VR~rV~~v~--~~~~--~~~~i~-T~~~~~LG~ 170 (176)
T PTZ00162 135 IQIKPNTEVRLRLQGVR--YDAS--NLFAIA-TINSDYLGP 170 (176)
T ss_pred EEECCCCEEEEEEEEEE--ecCC--CcEEEE-EecCCCcCc
Confidence 34788999999999994 3444 346666 334444333
No 31
>smart00360 RRM RNA recognition motif.
Probab=21.27 E-value=2.1e+02 Score=17.51 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcccCC------C------ceEEeCcccCHHHHHHHHHh
Q 028755 166 RLAEIRRFFEDYKKNE------N------KEVAVNDFLPASDAYNSVQQ 202 (204)
Q Consensus 166 ~l~~I~~fF~~YK~~e------g------K~v~~~g~~~~~~A~~vI~~ 202 (204)
.-+.|++||+.|-... . +...+..|.+.+.|.+.++.
T Consensus 9 ~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~ 57 (71)
T smart00360 9 TEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEA 57 (71)
T ss_pred CHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 3467888998775321 1 22556678899999888753
No 32
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=20.74 E-value=76 Score=21.51 Aligned_cols=34 Identities=29% Similarity=0.276 Sum_probs=20.4
Q ss_pred cccccCccCCCCCcceEEEeccccCCCeeEEEEEEeee
Q 028755 93 YGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGL 130 (204)
Q Consensus 93 YGfIP~T~~~DgDPLDvlvl~~~p~~~G~v~~vrviG~ 130 (204)
-||||.+--.+. -..-...-+..|+.++|+++++
T Consensus 29 ~g~ip~~~l~~~----~~~~~~~~~~~G~~v~v~v~~v 62 (74)
T PF00575_consen 29 EGFIPISELSDD----RIDDPSEVYKIGQTVRVKVIKV 62 (74)
T ss_dssp EEEEEGGGSSSS----EESSSHGTCETTCEEEEEEEEE
T ss_pred EEEEEeehhcCc----cccccccccCCCCEEEEEEEEE
Confidence 478887754443 1111123356788999998884
No 33
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=20.41 E-value=4e+02 Score=24.53 Aligned_cols=43 Identities=19% Similarity=0.286 Sum_probs=28.9
Q ss_pred CCCChh-HHHHHHHHHHHcccCC----------Cc--eEEeCcccCHHHHHHHHHh
Q 028755 160 KELPPH-RLAEIRRFFEDYKKNE----------NK--EVAVNDFLPASDAYNSVQQ 202 (204)
Q Consensus 160 ~Dl~~~-~l~~I~~fF~~YK~~e----------gK--~v~~~g~~~~~~A~~vI~~ 202 (204)
..||.. .-++|+++|..|-... |+ -+.+..|.+.++|.+.|++
T Consensus 199 ~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 254 (346)
T TIGR01659 199 TNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA 254 (346)
T ss_pred eCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 344433 3467889999885432 22 3667789899999888874
No 34
>PF14829 GPAT_N: Glycerol-3-phosphate acyltransferase N-terminal; PDB: 1IUQ_A 1K30_A.
Probab=20.06 E-value=79 Score=23.56 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=17.6
Q ss_pred CCCChhHHHHHHHHHHHcccC
Q 028755 160 KELPPHRLAEIRRFFEDYKKN 180 (204)
Q Consensus 160 ~Dl~~~~l~~I~~fF~~YK~~ 180 (204)
..||+.+...++++|.+||..
T Consensus 25 GkLP~~va~gmeelY~NYk~A 45 (77)
T PF14829_consen 25 GKLPANVAAGMEELYQNYKNA 45 (77)
T ss_dssp TSS-HHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHH
Confidence 357999999999999999974
Done!