BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028756
MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKF
VNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQS
LGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPL
SSDPSYQISYLNVLKGLYMVVFGF

High Scoring Gene Products

Symbol, full name Information P value
AT1G55980 protein from Arabidopsis thaliana 6.0e-64
AT3G04650 protein from Arabidopsis thaliana 1.3e-08

The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028756
        (204 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2012005 - symbol:AT1G55980 species:3702 "Arabi...   652  6.0e-64   1
TAIR|locus:2012030 - symbol:AT1G56000 species:3702 "Arabi...   652  6.0e-64   1
TAIR|locus:2084903 - symbol:AT3G04650 species:3702 "Arabi...   146  1.3e-08   1


>TAIR|locus:2012005 [details] [associations]
            symbol:AT1G55980 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0016491 "oxidoreductase
            activity" evidence=IEA] [GO:0055114 "oxidation-reduction process"
            evidence=IEA] InterPro:IPR016040 EMBL:CP002684 GO:GO:0000166
            Gene3D:3.40.50.720 UniGene:At.71152 IPI:IPI00532476
            RefSeq:NP_175994.2 UniGene:At.48311 ProteinModelPortal:F4I3I1
            SMR:F4I3I1 EnsemblPlants:AT1G55980.1 GeneID:842049
            KEGG:ath:AT1G55980 OMA:ENAFRCK PhylomeDB:F4I3I1 Uniprot:F4I3I1
        Length = 466

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 121/192 (63%), Positives = 149/192 (77%)

Query:     1 MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKF 60
             MSQRRE  EDG E++FDHGAPFF V+N+D +ALV EWES G V+EWK   GSFD  S KF
Sbjct:   197 MSQRREIGEDGKELMFDHGAPFFCVSNSDAMALVHEWESRGFVSEWKQVFGSFDCASNKF 256

Query:    61 VNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQS 120
             + IQQ+G  KKYVGVPGMNSI KALC++ GV+S FG G+ + EWLE++  W ++   G++
Sbjct:   257 LGIQQEGDAKKYVGVPGMNSISKALCNESGVKSMFGTGIAKMEWLEEEIPWLLTDSKGEN 316

Query:   121 LGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPL 180
             LG+F+GVVASDKN+VSPRF  VTG PPPLDL+  P+LA KL+ IPV PCF+LMLAF EPL
Sbjct:   317 LGRFDGVVASDKNIVSPRFTQVTGLPPPLDLSLVPELATKLQNIPVLPCFSLMLAFKEPL 376

Query:   181 SSDPSYQISYLN 192
             SS P   +S+ N
Sbjct:   377 SSIPVKGLSFKN 388


>TAIR|locus:2012030 [details] [associations]
            symbol:AT1G56000 species:3702 "Arabidopsis thaliana"
            [GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] EMBL:CP002684
            UniGene:At.48312 UniGene:At.71152 eggNOG:COG3380 UniGene:At.48311
            EMBL:AY069897 EMBL:AY142026 EMBL:AK316780 IPI:IPI00533415
            RefSeq:NP_175996.2 ProteinModelPortal:Q8VYV2 SMR:Q8VYV2
            IntAct:Q8VYV2 PRIDE:Q8VYV2 EnsemblPlants:AT1G56000.1 GeneID:842051
            KEGG:ath:AT1G56000 TAIR:At1g56000 InParanoid:Q8VYV2 KO:K06955
            OMA:APCWTLM PhylomeDB:Q8VYV2 ProtClustDB:CLSN2690468
            Genevestigator:Q8VYV2 Uniprot:Q8VYV2
        Length = 384

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 121/192 (63%), Positives = 149/192 (77%)

Query:     1 MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKF 60
             MSQRRE  EDG E++FDHGAPFF V+N+D +ALV EWES G V+EWK   GSFD  S KF
Sbjct:    59 MSQRREIGEDGKELMFDHGAPFFCVSNSDAMALVHEWESRGFVSEWKQVFGSFDCASNKF 118

Query:    61 VNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQS 120
             + IQQ+G  KKYVGVPGMNSI KALC++ GV+S FG G+ + EWLE++  W ++   G++
Sbjct:   119 LGIQQEGDAKKYVGVPGMNSISKALCNESGVKSMFGTGIAKMEWLEEEIPWLLTDSKGEN 178

Query:   121 LGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPL 180
             LG+F+GVVASDKN+VSPRF  VTG PPPLDL+  P+LA KL+ IPV PCF+LMLAF EPL
Sbjct:   179 LGRFDGVVASDKNIVSPRFTQVTGLPPPLDLSLVPELATKLQNIPVLPCFSLMLAFKEPL 238

Query:   181 SSDPSYQISYLN 192
             SS P   +S+ N
Sbjct:   239 SSIPVKGLSFKN 250


>TAIR|locus:2084903 [details] [associations]
            symbol:AT3G04650 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009507 "chloroplast"
            evidence=IDA] GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
            EMBL:AC011437 eggNOG:COG3380 EMBL:AY050342 EMBL:BT004515
            IPI:IPI00525811 RefSeq:NP_566235.1 UniGene:At.26589
            ProteinModelPortal:Q9SR09 SMR:Q9SR09 PaxDb:Q9SR09 PRIDE:Q9SR09
            EnsemblPlants:AT3G04650.1 GeneID:819623 KEGG:ath:AT3G04650
            TAIR:At3g04650 HOGENOM:HOG000244162 InParanoid:Q9SR09 OMA:QARIASW
            PhylomeDB:Q9SR09 ProtClustDB:CLSN2688068 Genevestigator:Q9SR09
            Uniprot:Q9SR09
        Length = 486

 Score = 146 (56.5 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 48/171 (28%), Positives = 82/171 (47%)

Query:    14 MLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYV 73
             ++FDH A FFT  ++  + LV  W   GLV EWK  +G  + +   F          +Y+
Sbjct:   142 LIFDHAAQFFTADDSRFIKLVDGWLEKGLVREWKGAVGELE-IGGSFSQFPSSSP-PRYI 199

Query:    74 GVPGMNSICKALCHQPGVESKFGVGVGRFEW---LEDKN-LWSVSGLDGQSLGQFNGVVA 129
                GM S+  +L     +ES+  V + R  W   LE  N +W +S  +G   GQF+ +V 
Sbjct:   200 AANGMRSLADSLL----LESQM-VNLVRPCWISKLEPLNGMWHLSE-NGTPRGQFDVIVI 253

Query:   130 SDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPL 180
             +     + R    +G P          +A +++++ ++  +AL+ AF +PL
Sbjct:   254 AHNGKCANRLLSASGLPL---------VAKQMKKLDLSSIWALLAAFDDPL 295


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.138   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      204       204   0.00094  111 3  11 22  0.36    33
                                                     31  0.46    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  184 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.81u 0.19s 17.00t   Elapsed:  00:00:01
  Total cpu time:  16.81u 0.19s 17.00t   Elapsed:  00:00:01
  Start:  Sat May 11 09:44:48 2013   End:  Sat May 11 09:44:49 2013

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