Query 028756
Match_columns 204
No_of_seqs 168 out of 870
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 16:29:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028756.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028756hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3380 Predicted NAD/FAD-depe 100.0 1.7E-37 3.6E-42 254.1 8.4 175 1-196 40-214 (331)
2 TIGR00562 proto_IX_ox protopor 99.3 2.4E-11 5.2E-16 108.5 11.5 95 72-179 218-313 (462)
3 PLN02576 protoporphyrinogen ox 99.3 5.1E-11 1.1E-15 107.5 11.8 99 70-180 230-332 (496)
4 PRK11883 protoporphyrinogen ox 99.1 1.2E-09 2.6E-14 97.0 13.2 107 70-191 212-320 (451)
5 PRK12416 protoporphyrinogen ox 99.1 5.3E-10 1.2E-14 100.1 11.0 94 71-179 218-312 (463)
6 TIGR03467 HpnE squalene-associ 98.9 1.8E-08 4E-13 88.2 11.4 103 72-190 189-296 (419)
7 PLN02328 lysine-specific histo 98.9 2.2E-08 4.8E-13 95.0 12.4 99 70-181 428-527 (808)
8 COG1232 HemY Protoporphyrinoge 98.9 1.6E-08 3.5E-13 90.2 10.4 112 70-196 206-319 (444)
9 PLN02529 lysine-specific histo 98.8 7.1E-08 1.5E-12 91.0 12.6 99 69-181 347-447 (738)
10 PLN02268 probable polyamine ox 98.7 1.7E-07 3.6E-12 83.4 11.8 98 72-181 194-292 (435)
11 PLN03000 amine oxidase 98.7 2.5E-07 5.4E-12 88.3 12.3 99 69-181 371-471 (881)
12 PRK07233 hypothetical protein; 98.6 1.2E-07 2.6E-12 83.6 8.8 97 71-180 190-289 (434)
13 PF01593 Amino_oxidase: Flavin 98.6 3E-07 6.4E-12 79.6 8.8 110 72-193 205-317 (450)
14 PLN02568 polyamine oxidase 98.5 7.3E-07 1.6E-11 81.8 10.8 106 70-181 233-340 (539)
15 COG2907 Predicted NAD/FAD-bind 98.4 1.5E-06 3.3E-11 74.7 8.8 98 67-177 208-305 (447)
16 PLN02676 polyamine oxidase 98.4 2.4E-06 5.3E-11 77.5 10.6 97 75-181 220-326 (487)
17 COG1231 Monoamine oxidase [Ami 98.4 2.1E-06 4.5E-11 76.1 9.5 114 69-194 199-315 (450)
18 PLN02976 amine oxidase 98.4 3.1E-06 6.6E-11 84.1 11.0 102 70-181 927-1037(1713)
19 PRK07208 hypothetical protein; 98.3 5.1E-06 1.1E-10 74.7 10.7 96 75-181 214-317 (479)
20 PLN02612 phytoene desaturase 98.2 1.5E-05 3.3E-10 73.6 11.2 102 79-192 308-414 (567)
21 TIGR02733 desat_CrtD C-3',4' d 98.2 7.1E-06 1.5E-10 74.2 8.9 98 71-179 224-331 (492)
22 TIGR02731 phytoene_desat phyto 98.1 2.3E-05 5.1E-10 70.0 10.5 94 78-181 212-314 (453)
23 TIGR02732 zeta_caro_desat caro 98.1 1.7E-05 3.7E-10 71.8 8.6 92 79-181 223-322 (474)
24 KOG1276 Protoporphyrinogen oxi 98.0 1.2E-05 2.7E-10 70.7 5.7 111 68-190 238-354 (491)
25 PLN02487 zeta-carotene desatur 97.5 0.00062 1.3E-08 63.1 9.3 101 72-181 287-398 (569)
26 TIGR02734 crtI_fam phytoene de 97.5 0.0009 2E-08 60.7 9.8 96 71-177 211-312 (502)
27 TIGR02730 carot_isom carotene 97.0 0.004 8.6E-08 56.5 8.8 100 70-179 220-324 (493)
28 PF07156 Prenylcys_lyase: Pren 96.8 0.0077 1.7E-07 52.9 9.0 68 68-139 117-188 (368)
29 KOG0685 Flavin-containing amin 96.5 0.016 3.5E-07 52.1 8.9 107 73-190 217-336 (498)
30 PF13738 Pyr_redox_3: Pyridine 96.4 0.0051 1.1E-07 48.5 4.6 55 73-130 79-133 (203)
31 KOG0029 Amine oxidase [Seconda 96.1 0.037 8E-07 50.6 9.1 100 70-181 210-311 (501)
32 COG1233 Phytoene dehydrogenase 95.5 0.031 6.6E-07 50.9 5.9 60 69-130 214-276 (487)
33 PTZ00363 rab-GDP dissociation 94.8 0.088 1.9E-06 47.5 6.7 55 73-130 226-285 (443)
34 COG0579 Predicted dehydrogenas 94.5 0.19 4.1E-06 45.1 7.9 64 79-146 157-221 (429)
35 PF13454 NAD_binding_9: FAD-NA 94.0 0.15 3.4E-06 38.9 5.6 34 94-130 119-152 (156)
36 PF01266 DAO: FAD dependent ox 93.9 0.1 2.3E-06 44.0 5.0 49 78-130 146-198 (358)
37 COG2081 Predicted flavoprotein 93.5 0.14 2.9E-06 45.4 5.0 59 76-137 108-169 (408)
38 PF00743 FMO-like: Flavin-bind 93.4 0.078 1.7E-06 48.9 3.6 67 64-130 72-145 (531)
39 TIGR03219 salicylate_mono sali 93.1 0.25 5.5E-06 43.6 6.3 50 79-131 105-155 (414)
40 PRK13339 malate:quinone oxidor 92.9 0.35 7.5E-06 44.3 6.9 63 79-144 188-255 (497)
41 TIGR03197 MnmC_Cterm tRNA U-34 92.7 0.23 5E-06 43.3 5.4 49 79-130 135-185 (381)
42 PLN02172 flavin-containing mon 92.6 0.23 4.9E-06 45.0 5.3 50 79-130 111-168 (461)
43 PF03486 HI0933_like: HI0933-l 92.2 0.27 5.9E-06 43.8 5.2 60 76-138 106-169 (409)
44 PRK07236 hypothetical protein; 91.8 0.51 1.1E-05 41.2 6.4 52 77-131 98-150 (386)
45 PRK05732 2-octaprenyl-6-methox 89.9 1 2.2E-05 39.1 6.5 48 81-131 118-165 (395)
46 PRK11728 hydroxyglutarate oxid 89.5 1.3 2.7E-05 38.9 6.8 48 79-130 149-199 (393)
47 PRK09126 hypothetical protein; 89.5 1.1 2.4E-05 39.0 6.4 48 81-131 116-163 (392)
48 TIGR01984 UbiH 2-polyprenyl-6- 89.4 1.1 2.4E-05 38.8 6.3 49 79-130 105-157 (382)
49 PRK01747 mnmC bifunctional tRN 89.4 0.85 1.8E-05 43.1 6.0 49 79-130 408-458 (662)
50 PRK06753 hypothetical protein; 88.7 1.4 3.1E-05 38.0 6.5 50 79-131 98-148 (373)
51 PRK07588 hypothetical protein; 88.3 1.2 2.6E-05 38.9 5.8 49 80-131 104-154 (391)
52 PRK05714 2-octaprenyl-3-methyl 88.3 1.4 3.1E-05 38.5 6.4 47 81-131 118-164 (405)
53 PF06039 Mqo: Malate:quinone o 88.1 1.1 2.5E-05 40.5 5.6 48 81-130 187-239 (488)
54 PRK08849 2-octaprenyl-3-methyl 87.9 1.4 3.1E-05 38.4 6.1 47 82-131 117-163 (384)
55 TIGR02352 thiamin_ThiO glycine 87.7 3.1 6.8E-05 35.0 7.9 48 79-130 137-188 (337)
56 PRK08020 ubiF 2-octaprenyl-3-m 87.4 1.8 4E-05 37.6 6.4 48 81-131 118-165 (391)
57 TIGR03862 flavo_PP4765 unchara 86.8 2.1 4.6E-05 37.8 6.5 58 78-139 85-145 (376)
58 PRK06847 hypothetical protein; 86.8 1.7 3.7E-05 37.5 5.9 40 89-131 120-159 (375)
59 TIGR01988 Ubi-OHases Ubiquinon 86.5 2.1 4.5E-05 36.9 6.2 49 79-130 106-158 (385)
60 PRK07333 2-octaprenyl-6-methox 86.3 2.2 4.8E-05 37.1 6.4 49 80-131 112-163 (403)
61 PRK08850 2-octaprenyl-6-methox 86.2 2.2 4.7E-05 37.5 6.3 48 81-131 117-164 (405)
62 PRK11259 solA N-methyltryptoph 85.8 1.9 4.2E-05 37.1 5.7 38 89-130 162-199 (376)
63 PRK08773 2-octaprenyl-3-methyl 85.6 2.5 5.5E-05 36.8 6.4 40 89-131 126-165 (392)
64 PTZ00383 malate:quinone oxidor 85.6 2 4.3E-05 39.4 5.9 36 91-130 232-268 (497)
65 PRK09897 hypothetical protein; 85.5 2 4.3E-05 39.8 5.8 39 91-131 124-162 (534)
66 TIGR01292 TRX_reduct thioredox 85.2 2.2 4.7E-05 35.3 5.6 38 89-130 70-107 (300)
67 PF00070 Pyr_redox: Pyridine n 84.9 1.7 3.6E-05 29.1 3.9 39 78-118 42-80 (80)
68 PRK07494 2-octaprenyl-6-methox 84.9 2.5 5.4E-05 36.7 6.0 48 80-131 116-163 (388)
69 PRK04965 NADH:flavorubredoxin 84.7 3 6.5E-05 36.3 6.4 51 86-139 193-243 (377)
70 TIGR03329 Phn_aa_oxid putative 84.5 2.3 5E-05 38.2 5.8 39 89-132 196-234 (460)
71 PRK08013 oxidoreductase; Provi 84.5 3 6.6E-05 36.6 6.4 48 81-131 117-164 (400)
72 PRK08163 salicylate hydroxylas 84.2 3.1 6.8E-05 36.2 6.3 39 90-131 124-162 (396)
73 PF13450 NAD_binding_8: NAD(P) 83.7 0.96 2.1E-05 29.6 2.2 24 14-37 43-68 (68)
74 TIGR01377 soxA_mon sarcosine o 83.7 2.7 5.8E-05 36.3 5.6 39 88-130 157-195 (380)
75 PRK06834 hypothetical protein; 83.1 3.6 7.7E-05 37.5 6.4 40 89-131 113-152 (488)
76 PRK07364 2-octaprenyl-6-methox 82.0 4.1 9E-05 35.6 6.2 50 80-131 122-177 (415)
77 PRK07045 putative monooxygenas 81.9 4.9 0.00011 35.0 6.6 40 89-131 120-161 (388)
78 TIGR01320 mal_quin_oxido malat 81.9 5.1 0.00011 36.5 6.9 50 79-130 178-235 (483)
79 PRK05257 malate:quinone oxidor 81.3 4 8.7E-05 37.3 6.0 62 80-144 184-254 (494)
80 PRK12409 D-amino acid dehydrog 81.1 4.3 9.3E-05 35.6 6.0 40 89-130 210-253 (410)
81 PRK05868 hypothetical protein; 80.8 5.1 0.00011 34.9 6.3 49 80-131 106-156 (372)
82 PRK06617 2-octaprenyl-6-methox 80.7 5.3 0.00012 34.7 6.4 49 79-131 104-156 (374)
83 PRK00711 D-amino acid dehydrog 80.6 4.8 0.0001 35.2 6.1 47 80-130 202-252 (416)
84 TIGR03364 HpnW_proposed FAD de 79.9 4.4 9.5E-05 34.9 5.6 44 79-130 149-192 (365)
85 PRK07608 ubiquinone biosynthes 79.4 5.9 0.00013 34.3 6.3 47 80-131 116-163 (388)
86 TIGR00275 flavoprotein, HI0933 79.2 5.3 0.00012 35.3 6.0 50 77-130 103-155 (400)
87 COG2509 Uncharacterized FAD-de 79.1 5.4 0.00012 36.2 5.8 57 71-130 165-225 (486)
88 COG0654 UbiH 2-polyprenyl-6-me 78.7 7.4 0.00016 34.0 6.7 51 78-131 103-158 (387)
89 PRK06475 salicylate hydroxylas 78.2 7.2 0.00016 34.2 6.5 48 82-131 114-163 (400)
90 PRK06116 glutathione reductase 78.2 6.1 0.00013 35.3 6.1 39 89-130 221-260 (450)
91 PRK15317 alkyl hydroperoxide r 77.7 6.2 0.00014 36.1 6.1 39 89-130 279-317 (517)
92 PRK06416 dihydrolipoamide dehy 77.6 4.8 0.0001 36.1 5.3 47 82-131 219-268 (462)
93 PRK06183 mhpA 3-(3-hydroxyphen 77.6 6 0.00013 36.3 6.0 49 81-131 119-170 (538)
94 PRK07845 flavoprotein disulfid 77.3 6.2 0.00013 35.6 5.9 46 83-131 225-270 (466)
95 PLN02507 glutathione reductase 77.0 6.3 0.00014 36.0 5.9 41 87-130 255-295 (499)
96 PRK07190 hypothetical protein; 76.8 6.7 0.00014 35.7 6.0 40 89-131 122-161 (487)
97 PLN02927 antheraxanthin epoxid 76.6 7.3 0.00016 37.1 6.3 50 79-131 194-244 (668)
98 TIGR03378 glycerol3P_GlpB glyc 76.0 5.9 0.00013 35.6 5.3 62 66-130 254-317 (419)
99 TIGR03140 AhpF alkyl hydropero 75.8 7.8 0.00017 35.5 6.2 40 89-131 280-319 (515)
100 TIGR02032 GG-red-SF geranylger 75.6 8.7 0.00019 31.4 6.0 42 87-130 102-143 (295)
101 KOG1399 Flavin-containing mono 75.0 4.5 9.7E-05 36.7 4.3 56 73-130 87-148 (448)
102 PRK05249 soluble pyridine nucl 75.0 7.7 0.00017 34.7 5.9 45 89-136 229-273 (461)
103 PRK06184 hypothetical protein; 74.9 8.4 0.00018 35.0 6.2 47 81-131 115-164 (502)
104 TIGR01424 gluta_reduc_2 glutat 74.0 8.8 0.00019 34.3 6.0 39 89-130 220-258 (446)
105 PRK06996 hypothetical protein; 73.7 9.5 0.00021 33.4 6.0 48 81-131 121-170 (398)
106 TIGR01989 COQ6 Ubiquinone bios 72.6 11 0.00023 33.7 6.1 51 80-131 122-179 (437)
107 TIGR01350 lipoamide_DH dihydro 72.5 8.6 0.00019 34.4 5.6 41 89-131 224-265 (461)
108 PF13434 K_oxygenase: L-lysine 72.0 5.9 0.00013 34.4 4.2 52 79-130 98-154 (341)
109 PF13434 K_oxygenase: L-lysine 71.3 6.5 0.00014 34.2 4.3 39 90-130 293-336 (341)
110 TIGR02485 CobZ_N-term precorri 70.7 15 0.00033 32.6 6.7 55 76-132 120-180 (432)
111 TIGR03385 CoA_CoA_reduc CoA-di 70.6 9.9 0.00022 33.6 5.5 45 83-130 51-98 (427)
112 PRK10157 putative oxidoreducta 69.9 12 0.00026 33.3 5.9 53 76-131 108-160 (428)
113 PRK12266 glpD glycerol-3-phosp 69.6 55 0.0012 29.9 10.2 40 89-130 168-211 (508)
114 PRK08010 pyridine nucleotide-d 68.3 14 0.00029 33.0 5.9 39 88-130 211-249 (441)
115 PRK09754 phenylpropionate diox 67.5 14 0.00031 32.3 5.8 40 88-131 198-237 (396)
116 COG2072 TrkA Predicted flavopr 67.4 9.6 0.00021 34.3 4.7 53 79-131 85-140 (443)
117 KOG4254 Phytoene desaturase [C 66.3 6 0.00013 36.0 3.1 67 73-144 258-328 (561)
118 PRK08132 FAD-dependent oxidore 65.3 18 0.00039 33.2 6.2 49 81-131 131-181 (547)
119 PRK14727 putative mercuric red 65.1 17 0.00036 32.9 5.9 38 89-130 241-278 (479)
120 PRK13369 glycerol-3-phosphate 64.6 1.1E+02 0.0023 27.9 11.0 41 88-130 167-210 (502)
121 PRK06175 L-aspartate oxidase; 64.5 18 0.0004 32.3 5.9 51 80-133 133-187 (433)
122 TIGR03452 mycothione_red mycot 64.3 25 0.00053 31.6 6.7 39 90-131 223-261 (452)
123 PRK13512 coenzyme A disulfide 64.3 17 0.00037 32.4 5.7 46 83-130 65-112 (438)
124 PRK07538 hypothetical protein; 63.7 21 0.00045 31.4 6.1 49 81-131 108-161 (413)
125 PRK14694 putative mercuric red 63.2 23 0.0005 31.9 6.4 41 87-131 229-269 (468)
126 COG0644 FixC Dehydrogenases (f 62.7 73 0.0016 27.9 9.4 59 71-131 89-148 (396)
127 PRK06185 hypothetical protein; 62.3 23 0.00049 30.9 6.0 47 83-131 116-165 (407)
128 PRK06912 acoL dihydrolipoamide 62.2 20 0.00043 32.2 5.8 42 88-131 223-264 (458)
129 PRK08244 hypothetical protein; 61.9 19 0.00041 32.6 5.6 52 78-131 102-155 (493)
130 TIGR02053 MerA mercuric reduct 61.0 21 0.00045 32.0 5.6 50 80-131 211-262 (463)
131 PRK07846 mycothione reductase; 60.3 25 0.00055 31.5 6.1 44 90-136 220-263 (451)
132 PRK07818 dihydrolipoamide dehy 60.2 23 0.00049 31.9 5.8 47 88-136 225-274 (466)
133 PRK06126 hypothetical protein; 60.1 22 0.00047 32.6 5.7 40 90-131 141-184 (545)
134 TIGR01790 carotene-cycl lycope 59.1 27 0.00058 30.2 5.9 38 90-130 99-136 (388)
135 TIGR02374 nitri_red_nirB nitri 59.1 27 0.00059 33.9 6.4 58 79-139 185-242 (785)
136 PRK09564 coenzyme A disulfide 59.0 22 0.00048 31.5 5.5 40 89-130 69-110 (444)
137 PTZ00052 thioredoxin reductase 58.7 27 0.00058 31.9 6.0 46 88-136 234-279 (499)
138 TIGR01421 gluta_reduc_1 glutat 58.5 28 0.00062 31.2 6.1 47 88-136 219-266 (450)
139 PRK07251 pyridine nucleotide-d 58.3 25 0.00054 31.2 5.6 46 81-130 203-248 (438)
140 TIGR02374 nitri_red_nirB nitri 57.9 17 0.00037 35.3 4.8 39 87-130 65-103 (785)
141 TIGR03169 Nterm_to_SelD pyridi 57.7 19 0.0004 31.0 4.6 47 78-131 193-239 (364)
142 COG1249 Lpd Pyruvate/2-oxoglut 57.4 30 0.00065 31.4 6.0 46 82-130 221-267 (454)
143 PRK10015 oxidoreductase; Provi 56.8 28 0.0006 31.1 5.7 43 86-131 118-160 (429)
144 TIGR03169 Nterm_to_SelD pyridi 56.1 26 0.00055 30.1 5.2 41 84-130 62-102 (364)
145 PRK13748 putative mercuric red 56.1 29 0.00062 31.9 5.8 39 89-131 323-361 (561)
146 PRK09564 coenzyme A disulfide 56.0 22 0.00047 31.6 4.9 50 78-131 193-242 (444)
147 PRK06370 mercuric reductase; V 55.9 30 0.00066 31.0 5.8 44 86-131 222-267 (463)
148 PRK04965 NADH:flavorubredoxin 55.0 26 0.00055 30.4 5.1 41 84-130 66-106 (377)
149 PRK06327 dihydrolipoamide dehy 54.6 29 0.00064 31.3 5.5 41 89-131 237-280 (475)
150 TIGR01373 soxB sarcosine oxida 53.2 43 0.00094 29.2 6.3 39 89-130 196-235 (407)
151 PRK11445 putative oxidoreducta 52.3 30 0.00064 29.8 5.0 40 90-131 112-153 (351)
152 PLN02463 lycopene beta cyclase 51.5 44 0.00095 30.2 6.1 38 90-131 128-165 (447)
153 TIGR01813 flavo_cyto_c flavocy 51.1 38 0.00083 30.0 5.6 52 80-133 131-190 (439)
154 TIGR03385 CoA_CoA_reduc CoA-di 50.7 41 0.0009 29.6 5.8 43 83-130 186-228 (427)
155 TIGR03377 glycerol3P_GlpA glyc 50.5 1.1E+02 0.0023 28.0 8.6 40 89-130 141-185 (516)
156 PF05834 Lycopene_cycl: Lycope 50.4 50 0.0011 28.8 6.2 37 91-130 101-137 (374)
157 TIGR01438 TGR thioredoxin and 50.0 41 0.00088 30.6 5.7 50 86-137 230-281 (484)
158 PRK14989 nitrite reductase sub 49.6 45 0.00097 32.8 6.2 58 79-139 190-249 (847)
159 PF05678 VQ: VQ motif; InterP 49.2 16 0.00036 20.2 1.9 19 20-38 5-23 (31)
160 COG0665 DadA Glycine/D-amino a 47.8 47 0.001 28.5 5.5 47 80-130 157-207 (387)
161 COG1252 Ndh NADH dehydrogenase 47.1 28 0.0006 31.2 4.0 48 77-130 210-257 (405)
162 PTZ00318 NADH dehydrogenase-li 46.7 56 0.0012 29.0 6.0 42 82-130 234-275 (424)
163 TIGR00031 UDP-GALP_mutase UDP- 46.5 34 0.00074 30.2 4.5 55 73-137 192-246 (377)
164 TIGR01423 trypano_reduc trypan 45.7 74 0.0016 29.0 6.7 47 89-138 244-291 (486)
165 PRK06481 fumarate reductase fl 44.7 58 0.0013 29.7 5.9 43 89-133 203-249 (506)
166 PRK09754 phenylpropionate diox 44.3 42 0.0009 29.4 4.7 37 89-130 71-107 (396)
167 PRK06115 dihydrolipoamide dehy 44.2 56 0.0012 29.4 5.7 40 89-130 228-271 (466)
168 PRK07512 L-aspartate oxidase; 43.9 37 0.00081 31.1 4.5 52 80-133 141-195 (513)
169 PF04839 PSRP-3_Ycf65: Plastid 43.8 27 0.00058 21.6 2.4 23 21-43 4-26 (49)
170 PRK13977 myosin-cross-reactive 43.6 1.8E+02 0.004 27.3 8.9 52 79-130 226-288 (576)
171 PF00732 GMC_oxred_N: GMC oxid 42.9 42 0.00092 27.8 4.4 51 90-143 207-263 (296)
172 TIGR00551 nadB L-aspartate oxi 42.8 61 0.0013 29.4 5.7 50 80-131 133-185 (488)
173 PRK12842 putative succinate de 42.4 63 0.0014 30.0 5.8 55 79-135 214-275 (574)
174 KOG3086 Predicted dioxygenase 42.2 23 0.0005 29.6 2.5 32 1-40 1-32 (296)
175 PRK06134 putative FAD-binding 42.2 66 0.0014 30.0 5.9 53 80-134 218-277 (581)
176 PRK12845 3-ketosteroid-delta-1 41.2 65 0.0014 30.0 5.7 59 75-136 214-279 (564)
177 PRK05329 anaerobic glycerol-3- 39.0 77 0.0017 28.5 5.6 52 76-130 257-313 (422)
178 PRK14989 nitrite reductase sub 38.5 59 0.0013 32.0 5.1 39 87-130 70-108 (847)
179 PF01494 FAD_binding_3: FAD bi 37.4 43 0.00093 27.9 3.6 40 89-130 124-167 (356)
180 PRK11101 glpA sn-glycerol-3-ph 37.3 2.1E+02 0.0046 26.4 8.4 40 89-130 162-206 (546)
181 PTZ00058 glutathione reductase 36.1 1.4E+02 0.003 27.9 7.0 42 88-131 290-332 (561)
182 PRK06467 dihydrolipoamide dehy 36.0 91 0.002 28.1 5.7 39 91-131 229-270 (471)
183 PRK08274 tricarballylate dehyd 35.8 86 0.0019 28.0 5.5 55 76-132 128-189 (466)
184 PRK10262 thioredoxin reductase 34.7 1.1E+02 0.0023 25.8 5.6 37 89-130 76-112 (321)
185 PRK13512 coenzyme A disulfide 34.2 92 0.002 27.7 5.4 36 88-130 201-236 (438)
186 PF15320 RAM: mRNA cap methyla 33.0 23 0.0005 24.3 1.0 26 23-48 11-37 (81)
187 PRK06263 sdhA succinate dehydr 31.9 1.3E+02 0.0027 27.8 6.0 43 89-133 147-195 (543)
188 PRK06069 sdhA succinate dehydr 31.4 1.1E+02 0.0024 28.4 5.6 54 78-133 140-198 (577)
189 PRK07121 hypothetical protein; 31.3 1.3E+02 0.0029 27.1 6.0 53 79-133 177-237 (492)
190 KOG2820 FAD-dependent oxidored 31.2 1.2E+02 0.0025 26.9 5.2 114 14-137 84-211 (399)
191 PLN02546 glutathione reductase 30.8 1.2E+02 0.0026 28.2 5.7 42 88-131 305-346 (558)
192 PRK05976 dihydrolipoamide dehy 30.7 1.3E+02 0.0027 27.1 5.7 44 87-131 232-277 (472)
193 PRK12837 3-ketosteroid-delta-1 30.5 1.3E+02 0.0029 27.4 5.9 51 82-134 180-234 (513)
194 PRK09231 fumarate reductase fl 30.4 1.4E+02 0.003 27.9 6.1 42 90-133 148-194 (582)
195 TIGR01789 lycopene_cycl lycope 30.3 96 0.0021 27.0 4.7 84 31-130 50-133 (370)
196 PRK08243 4-hydroxybenzoate 3-m 29.8 1.6E+02 0.0035 25.5 6.1 42 89-131 116-159 (392)
197 PRK06292 dihydrolipoamide dehy 29.3 1.6E+02 0.0034 26.2 6.1 38 91-130 224-263 (460)
198 PRK12843 putative FAD-binding 29.1 1.2E+02 0.0026 28.2 5.4 52 80-134 222-281 (578)
199 TIGR02462 pyranose_ox pyranose 28.2 1.2E+02 0.0025 28.4 5.0 51 90-140 228-284 (544)
200 PF01593 Amino_oxidase: Flavin 28.2 75 0.0016 26.9 3.7 28 13-40 39-66 (450)
201 PLN02661 Putative thiazole syn 28.1 1.2E+02 0.0026 26.8 4.8 51 78-130 175-239 (357)
202 PF00890 FAD_binding_2: FAD bi 27.6 98 0.0021 27.0 4.4 58 77-136 139-204 (417)
203 COG1251 NirB NAD(P)H-nitrite r 26.9 78 0.0017 30.7 3.7 45 82-131 65-109 (793)
204 PRK07804 L-aspartate oxidase; 26.7 1.5E+02 0.0032 27.4 5.5 52 80-133 145-208 (541)
205 TIGR01812 sdhA_frdA_Gneg succi 26.5 1.7E+02 0.0036 27.1 5.8 43 89-133 142-189 (566)
206 TIGR01810 betA choline dehydro 26.4 1.4E+02 0.0029 27.4 5.2 55 88-144 206-264 (532)
207 PRK12416 protoporphyrinogen ox 26.2 40 0.00086 30.1 1.6 27 14-40 54-80 (463)
208 TIGR00562 proto_IX_ox protopor 26.0 46 0.001 29.5 2.0 29 14-42 53-81 (462)
209 TIGR03467 HpnE squalene-associ 25.9 58 0.0013 28.1 2.6 32 15-46 37-68 (419)
210 COG3486 IucD Lysine/ornithine 25.7 1.1E+02 0.0023 27.7 4.1 51 78-130 274-335 (436)
211 TIGR02360 pbenz_hydroxyl 4-hyd 25.3 1.8E+02 0.004 25.3 5.7 49 81-131 109-159 (390)
212 PF04417 DUF501: Protein of un 24.8 25 0.00054 26.6 0.0 32 19-50 25-56 (139)
213 PRK06854 adenylylsulfate reduc 22.8 2.4E+02 0.0052 26.5 6.1 42 90-133 147-193 (608)
214 PF06100 Strep_67kDa_ant: Stre 22.2 6.4E+02 0.014 23.4 9.2 48 82-130 214-269 (500)
215 KOG1336 Monodehydroascorbate/f 22.2 1.5E+02 0.0031 27.3 4.3 67 73-140 252-318 (478)
216 COG0446 HcaD Uncharacterized N 22.2 1.9E+02 0.0041 24.6 5.1 52 76-130 178-232 (415)
217 PRK05945 sdhA succinate dehydr 22.0 2.3E+02 0.005 26.4 5.8 52 80-133 136-195 (575)
218 TIGR03143 AhpF_homolog putativ 21.9 1.7E+02 0.0036 27.1 4.9 46 80-130 61-109 (555)
219 PF05800 GvpO: Gas vesicle syn 21.6 1.3E+02 0.0029 21.4 3.2 28 83-115 28-56 (100)
220 TIGR01811 sdhA_Bsu succinate d 21.5 2.8E+02 0.0061 26.0 6.4 41 90-132 147-193 (603)
221 COG0492 TrxB Thioredoxin reduc 21.4 2.7E+02 0.0058 23.8 5.7 37 89-130 74-110 (305)
222 PRK07395 L-aspartate oxidase; 21.1 1.4E+02 0.0031 27.7 4.2 51 80-133 139-195 (553)
223 CHL00163 ycf65 putative riboso 20.9 72 0.0016 22.7 1.7 26 18-43 30-55 (99)
224 PLN02697 lycopene epsilon cycl 20.8 2.8E+02 0.0061 25.7 6.1 47 80-130 193-243 (529)
225 TIGR01176 fum_red_Fp fumarate 20.7 2.8E+02 0.0061 25.9 6.2 52 80-133 133-193 (580)
226 PF01134 GIDA: Glucose inhibit 20.7 2.1E+02 0.0045 25.6 5.0 49 78-130 97-147 (392)
227 TIGR02023 BchP-ChlP geranylger 20.3 2.4E+02 0.0052 24.4 5.4 40 89-131 105-151 (388)
228 KOG2404 Fumarate reductase, fl 20.3 1.3E+02 0.0028 26.7 3.4 66 68-135 132-206 (477)
No 1
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.7e-37 Score=254.11 Aligned_cols=175 Identities=25% Similarity=0.409 Sum_probs=149.5
Q ss_pred CcceeeccCCCCceecccCCCeeecCChHHHHHHHHHHhCceeeeecCcceeeecCCceeeecccCCCCceEEeCcCcHH
Q 028756 1 MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNS 80 (204)
Q Consensus 1 maTRr~~~~~~~~~~fDhGaqyft~~~~~f~~~v~~l~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~Gm~s 80 (204)
|||||+ +.+ .||||||||+++++.|.++|+.|.++|++++|+..++.+.+.+.. ....+..|++.+||++
T Consensus 40 lAtRRl--~~g---~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~~~~~~~~~~~~-----~~~d~~pyvg~pgmsa 109 (331)
T COG3380 40 LATRRL--DGG---RFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTPAVWTFTGDGSP-----PRGDEDPYVGEPGMSA 109 (331)
T ss_pred hheecc--CCc---cccccceeecCCchHHHHHHHHHHhCCceeeccccccccccCCCC-----CCCCCCccccCcchHH
Confidence 799999 666 599999999999999999999999999999999888887754311 1122333999999999
Q ss_pred HHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCcchhcccCCCCCCCCCcChHHHHH
Q 028756 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVK 160 (204)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p~~~~~~~~~~~~~~ 160 (204)
|+|+|++.|+ |.++++|+++.+ .++.|+|+.++|..+.+||.|||| +|+||++.||. +.+..+..++.+.
T Consensus 110 lak~LAtdL~--V~~~~rVt~v~~--~~~~W~l~~~~g~~~~~~d~vvla---~PAPQ~~~LLt---~~~~~~p~~l~~~ 179 (331)
T COG3380 110 LAKFLATDLT--VVLETRVTEVAR--TDNDWTLHTDDGTRHTQFDDVVLA---IPAPQTATLLT---TDADDLPAALRAA 179 (331)
T ss_pred HHHHHhccch--hhhhhhhhhhee--cCCeeEEEecCCCcccccceEEEe---cCCCcchhhcC---cccccchHHHHHh
Confidence 9999999776 899999999998 789999999887766799999999 99999999995 2233455579999
Q ss_pred hcCCCCcceEEEEEecCCCCCCCCcceEEEecCcee
Q 028756 161 LEEIPVNPCFALMLAFSEPLSSDPSYQISYLNVLKG 196 (204)
Q Consensus 161 l~~i~~~p~~~v~l~~~~~~~~~p~~g~~~~~~~~~ 196 (204)
+..|.|.|||+++++|+++++ .|++|.++.+++.+
T Consensus 180 ~a~V~y~Pc~s~~lg~~q~l~-~P~~G~~vdg~~la 214 (331)
T COG3380 180 LADVVYAPCWSAVLGYPQPLD-RPWPGNFVDGHPLA 214 (331)
T ss_pred hccceehhHHHHHhcCCccCC-CCCCCcccCCCeee
Confidence 999999999999999999998 79999877666654
No 2
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.29 E-value=2.4e-11 Score=108.51 Aligned_cols=95 Identities=13% Similarity=0.171 Sum_probs=83.4
Q ss_pred EEeCcCcHHHHHHHhcCCC-CeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCcchhcccCCCCCCC
Q 028756 72 YVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLD 150 (204)
Q Consensus 72 ~vg~~Gm~sl~~~La~~l~-~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p~~~~ 150 (204)
+...+||++|++.|++.++ .+|+++++|++|++ .+++|.|++.+|+. ..||+||+| +|++++..+++
T Consensus 218 ~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~--~~~~~~v~~~~g~~-~~ad~VI~t---~P~~~~~~ll~------ 285 (462)
T TIGR00562 218 QTLATGLETLPEEIEKRLKLTKVYKGTKVTKLSH--RGSNYTLELDNGVT-VETDSVVVT---APHKAAAGLLS------ 285 (462)
T ss_pred EecchhHHHHHHHHHHHhccCeEEcCCeEEEEEe--cCCcEEEEECCCcE-EEcCEEEEC---CCHHHHHHHhc------
Confidence 5678999999999999886 78999999999998 77889998877754 379999999 99999999985
Q ss_pred CCcChHHHHHhcCCCCcceEEEEEecCCC
Q 028756 151 LTFAPDLAVKLEEIPVNPCFALMLAFSEP 179 (204)
Q Consensus 151 ~~~~~~~~~~l~~i~~~p~~~v~l~~~~~ 179 (204)
++.++..+.+++++|.||+++++.|+++
T Consensus 286 -~~~~~~~~~l~~l~~~~~~~v~l~~~~~ 313 (462)
T TIGR00562 286 -ELSNSASSHLDKIHSPPVANVNLGFPEG 313 (462)
T ss_pred -ccCHHHHHHHhcCCCCceEEEEEEEchH
Confidence 4556778889999999999999999876
No 3
>PLN02576 protoporphyrinogen oxidase
Probab=99.26 E-value=5.1e-11 Score=107.54 Aligned_cols=99 Identities=16% Similarity=0.108 Sum_probs=83.5
Q ss_pred ceEEeCcCcHHHHHHHhcCCC-CeeecCeeEEeEEeecCCCC-EEEEeC--CCCcccccCEEEecCCCCCCcchhcccCC
Q 028756 70 KKYVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNL-WSVSGL--DGQSLGQFNGVVASDKNVVSPRFRDVTGR 145 (204)
Q Consensus 70 ~~~vg~~Gm~sl~~~La~~l~-~~i~~~~~V~~l~~~~~~~~-w~l~~~--~G~~~~~~d~VVla~~~~pa~~~~~ll~~ 145 (204)
..|...+||++|+++|++.++ .+|++|++|++|++ .+++ |.|+.. +|+....||+||+| +|++++..++.
T Consensus 230 ~~~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~--~~~~~~~v~~~~~~g~~~~~ad~VI~a---~P~~~l~~ll~- 303 (496)
T PLN02576 230 TVGSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSK--NDDGGYSLTYDTPEGKVNVTAKAVVMT---APLYVVSEMLR- 303 (496)
T ss_pred eeEeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEE--CCCCcEEEEEecCCCceeEEeCEEEEC---CCHHHHHHHhc-
Confidence 358889999999999999886 68999999999997 6665 988654 44323479999999 99999999986
Q ss_pred CCCCCCCcChHHHHHhcCCCCcceEEEEEecCCCC
Q 028756 146 PPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPL 180 (204)
Q Consensus 146 p~~~~~~~~~~~~~~l~~i~~~p~~~v~l~~~~~~ 180 (204)
+..++..+.+++++|.||+++++.|+++.
T Consensus 304 ------~~~~~~~~~l~~~~~~~~~~v~l~~~~~~ 332 (496)
T PLN02576 304 ------PKSPAAADALPEFYYPPVAAVTTSYPKEA 332 (496)
T ss_pred ------ccCHHHHHHhccCCCCceEEEEEEEchHH
Confidence 44567888999999999999999998863
No 4
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.11 E-value=1.2e-09 Score=96.98 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=86.8
Q ss_pred ceEEeCcCcHHHHHHHhcCCCC-eeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCcchhcccCCCCC
Q 028756 70 KKYVGVPGMNSICKALCHQPGV-ESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPP 148 (204)
Q Consensus 70 ~~~vg~~Gm~sl~~~La~~l~~-~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p~~ 148 (204)
..+...+||++|+++|++.++. +|+++++|++|+. .+++|.|...+|+. ..||+||+| +|.+++..++. +
T Consensus 212 ~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~--~~~~~~v~~~~g~~-~~~d~vI~a---~p~~~~~~l~~-~-- 282 (451)
T PRK11883 212 VFGTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDK--SGDGYEIVLSNGGE-IEADAVIVA---VPHPVLPSLFV-A-- 282 (451)
T ss_pred ceEeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEEE--cCCeEEEEECCCCE-EEcCEEEEC---CCHHHHHHhcc-C--
Confidence 3467899999999999998875 7999999999997 77789998888765 479999999 99999998864 1
Q ss_pred CCCCcChHHHHHhcCCCCcceEEEEEecCCCC-CCCCcceEEEe
Q 028756 149 LDLTFAPDLAVKLEEIPVNPCFALMLAFSEPL-SSDPSYQISYL 191 (204)
Q Consensus 149 ~~~~~~~~~~~~l~~i~~~p~~~v~l~~~~~~-~~~p~~g~~~~ 191 (204)
+.+.+.++.++|.++.++++.|+++. ...+..|+++.
T Consensus 283 ------~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~ 320 (451)
T PRK11883 283 ------PPAFALFKTIPSTSVATVALAFPESATNLPDGTGFLVA 320 (451)
T ss_pred ------hhHHHHHhCCCCCceEEEEEEeccccCCCCCceEEEec
Confidence 33467788999999999999999874 22334556554
No 5
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.11 E-value=5.3e-10 Score=100.13 Aligned_cols=94 Identities=14% Similarity=0.066 Sum_probs=79.5
Q ss_pred eEEeCcCcHHHHHHHhcCCC-CeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCcchhcccCCCCCC
Q 028756 71 KYVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPL 149 (204)
Q Consensus 71 ~~vg~~Gm~sl~~~La~~l~-~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p~~~ 149 (204)
-+...+||++|+++|++.++ .+|+++++|++|+. .+++|.|...+|+.+ .+|+||+| +|++++..|+..
T Consensus 218 ~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~--~~~~~~v~~~~g~~~-~ad~VI~a---~p~~~~~~ll~~---- 287 (463)
T PRK12416 218 FVSFKGGLSTIIDRLEEVLTETVVKKGAVTTAVSK--QGDRYEISFANHESI-QADYVVLA---APHDIAETLLQS---- 287 (463)
T ss_pred eEeeCCCHHHHHHHHHHhcccccEEcCCEEEEEEE--cCCEEEEEECCCCEE-EeCEEEEC---CCHHHHHhhcCC----
Confidence 35679999999999999885 47999999999997 777899988777643 79999999 999998888751
Q ss_pred CCCcChHHHHHhcCCCCcceEEEEEecCCC
Q 028756 150 DLTFAPDLAVKLEEIPVNPCFALMLAFSEP 179 (204)
Q Consensus 150 ~~~~~~~~~~~l~~i~~~p~~~v~l~~~~~ 179 (204)
+++.+.+.++.|.+|.+++++|+++
T Consensus 288 -----~~l~~~~~~~~~~~~~~v~l~~~~~ 312 (463)
T PRK12416 288 -----NELNEQFHTFKNSSLISIYLGFDIL 312 (463)
T ss_pred -----cchhHHHhcCCCCceEEEEEEechh
Confidence 3456678899999999999999975
No 6
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.88 E-value=1.8e-08 Score=88.17 Aligned_cols=103 Identities=15% Similarity=0.127 Sum_probs=75.5
Q ss_pred EEeCcCcHHHHH-HHhcCC---CCeeecCeeEEeEEeecCCCCEEEEe-CCCCcccccCEEEecCCCCCCcchhcccCCC
Q 028756 72 YVGVPGMNSICK-ALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSG-LDGQSLGQFNGVVASDKNVVSPRFRDVTGRP 146 (204)
Q Consensus 72 ~vg~~Gm~sl~~-~La~~l---~~~i~~~~~V~~l~~~~~~~~w~l~~-~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p 146 (204)
+...+||+++.. .|++.+ +.+|++|++|++|+. .+++|.+.. .+|+. ..||+||+| +|++++..++.
T Consensus 189 ~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~--~~~~~~~~~~~~g~~-~~~d~vi~a---~p~~~~~~ll~-- 260 (419)
T TIGR03467 189 LLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEA--NAGGIRALVLSGGET-LPADAVVLA---VPPRHAASLLP-- 260 (419)
T ss_pred eeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEE--cCCcceEEEecCCcc-ccCCEEEEc---CCHHHHHHhCC--
Confidence 334679987653 366543 678999999999997 667765433 34544 379999999 99999998874
Q ss_pred CCCCCCcChHHHHHhcCCCCcceEEEEEecCCCCCCCCcceEEE
Q 028756 147 PPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSDPSYQISY 190 (204)
Q Consensus 147 ~~~~~~~~~~~~~~l~~i~~~p~~~v~l~~~~~~~~~p~~g~~~ 190 (204)
. ++..+.+++++|.+|+++++.|+++.+ .+.+.+.+
T Consensus 261 ~-------~~~~~~l~~~~~~~~~~v~l~~~~~~~-~~~~~~~~ 296 (419)
T TIGR03467 261 G-------EDLGALLTALGYSPITTVHLRLDRAVR-LPAPMVGL 296 (419)
T ss_pred C-------chHHHHHhhcCCcceEEEEEEeCCCcC-CCCCeeee
Confidence 1 245677899999999999999999864 23333333
No 7
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.88 E-value=2.2e-08 Score=94.99 Aligned_cols=99 Identities=10% Similarity=0.036 Sum_probs=80.1
Q ss_pred ceEEeCcCcHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCcchhcc-cCCCCC
Q 028756 70 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDV-TGRPPP 148 (204)
Q Consensus 70 ~~~vg~~Gm~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~l-l~~p~~ 148 (204)
..+..++||++|+++|++.++ |++|++|++|.+ .+++|.+. .+|+.+ .||+||+| +|.+.+... +.
T Consensus 428 ~~~~v~GG~~~Li~aLa~~L~--I~ln~~V~~I~~--~~dgV~V~-~~G~~~-~AD~VIvT---vPl~vLk~~~I~---- 494 (808)
T PLN02328 428 DHCFIPGGNDTFVRELAKDLP--IFYERTVESIRY--GVDGVIVY-AGGQEF-HGDMVLCT---VPLGVLKKGSIE---- 494 (808)
T ss_pred eEEEECCcHHHHHHHHHhhCC--cccCCeeEEEEE--cCCeEEEE-eCCeEE-EcCEEEEC---CCHHHHhhcccc----
Confidence 477889999999999999886 999999999998 77889884 456543 79999999 999887631 10
Q ss_pred CCCCcChHHHHHhcCCCCcceEEEEEecCCCCC
Q 028756 149 LDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLS 181 (204)
Q Consensus 149 ~~~~~~~~~~~~l~~i~~~p~~~v~l~~~~~~~ 181 (204)
...++.+...++++++.|.++..+++.|+++.+
T Consensus 495 F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW 527 (808)
T PLN02328 495 FYPELPQRKKDAIQRLGYGLLNKVALLFPYNFW 527 (808)
T ss_pred cCCCCCHHHHHHHHcCCCcceEEEEEEeCCccc
Confidence 011455567788999999999999999999865
No 8
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.87 E-value=1.6e-08 Score=90.19 Aligned_cols=112 Identities=13% Similarity=0.173 Sum_probs=92.2
Q ss_pred ceEEeCcCcHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCcchhcccCCCCCC
Q 028756 70 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPL 149 (204)
Q Consensus 70 ~~~vg~~Gm~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p~~~ 149 (204)
..+-..+||++|.++|++.+..+|+++++|+.|.+ ++.+|.+.+.+|.. ..||.||+| +|++.+..+++
T Consensus 206 ~~~~~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~--~~~~~~~~~~~g~~-~~~D~VI~t---~p~~~l~~ll~----- 274 (444)
T COG1232 206 KFGYLRGGLQSLIEALAEKLEAKIRTGTEVTKIDK--KGAGKTIVDVGGEK-ITADGVIST---APLPELARLLG----- 274 (444)
T ss_pred cccccCccHHHHHHHHHHHhhhceeecceeeEEEE--cCCccEEEEcCCce-EEcceEEEc---CCHHHHHHHcC-----
Confidence 45677999999999999999877999999999998 66777777777765 479999999 99999999997
Q ss_pred CCCcChHHHHHhcCCCCcceEEEEEecCCC--CCCCCcceEEEecCcee
Q 028756 150 DLTFAPDLAVKLEEIPVNPCFALMLAFSEP--LSSDPSYQISYLNVLKG 196 (204)
Q Consensus 150 ~~~~~~~~~~~l~~i~~~p~~~v~l~~~~~--~~~~p~~g~~~~~~~~~ 196 (204)
+ ......+.++.|.+..+|.++++++ ...+...|+++.|++..
T Consensus 275 --~--~~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~ 319 (444)
T COG1232 275 --D--EAVSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPY 319 (444)
T ss_pred --C--cchhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCc
Confidence 2 3456778899999999999999885 11245568888777664
No 9
>PLN02529 lysine-specific histone demethylase 1
Probab=98.79 E-value=7.1e-08 Score=91.01 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=80.1
Q ss_pred CceEEeCcCcHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCcchhcc-cC-CC
Q 028756 69 NKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDV-TG-RP 146 (204)
Q Consensus 69 ~~~~vg~~Gm~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~l-l~-~p 146 (204)
...++..+||++|+++|++.++ |++|++|++|++ .+++|.|+..+ +. ..||+||+| +|.+.+... +. .|
T Consensus 347 G~~~~i~GG~~~Li~aLA~~L~--IrLnt~V~~I~~--~~dGVtV~t~~-~~-~~AD~VIVT---VPlgVLk~~~I~F~P 417 (738)
T PLN02529 347 GDHCFLAGGNWRLINALCEGVP--IFYGKTVDTIKY--GNDGVEVIAGS-QV-FQADMVLCT---VPLGVLKKRTIRFEP 417 (738)
T ss_pred CceEEECCcHHHHHHHHHhcCC--EEcCCceeEEEE--cCCeEEEEECC-EE-EEcCEEEEC---CCHHHHHhccccCCC
Confidence 3467889999999999999775 999999999998 77889997543 33 379999999 999888643 11 11
Q ss_pred CCCCCCcChHHHHHhcCCCCcceEEEEEecCCCCC
Q 028756 147 PPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLS 181 (204)
Q Consensus 147 ~~~~~~~~~~~~~~l~~i~~~p~~~v~l~~~~~~~ 181 (204)
++.+...++++++.|.++..+++.|+++.+
T Consensus 418 -----pLP~~K~~AI~rL~yG~v~KV~L~F~~~FW 447 (738)
T PLN02529 418 -----ELPRRKLAAIDRLGFGLLNKVAMVFPSVFW 447 (738)
T ss_pred -----CCCHHHHHHHHcCCCceeEEEEEEeCCccc
Confidence 344566788999999999999999999865
No 10
>PLN02268 probable polyamine oxidase
Probab=98.71 E-value=1.7e-07 Score=83.35 Aligned_cols=98 Identities=13% Similarity=0.107 Sum_probs=78.5
Q ss_pred EEeCcCcHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCcchhcc-cCCCCCCC
Q 028756 72 YVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDV-TGRPPPLD 150 (204)
Q Consensus 72 ~vg~~Gm~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~l-l~~p~~~~ 150 (204)
....+||++++++|++.+ +|++++.|++|.+ .+++|.|++.+|+.+ .+|+||+| +|.+.+..+ +.. .|
T Consensus 194 ~~~~~G~~~l~~~l~~~~--~i~~~~~V~~i~~--~~~~v~v~~~~g~~~-~ad~VIva---~P~~~l~~~~i~f-~p-- 262 (435)
T PLN02268 194 GLMVRGYDPVINTLAKGL--DIRLNHRVTKIVR--RYNGVKVTVEDGTTF-VADAAIIA---VPLGVLKANIIKF-EP-- 262 (435)
T ss_pred eeecCCHHHHHHHHhccC--ceeCCCeeEEEEE--cCCcEEEEECCCcEE-EcCEEEEe---cCHHHHhcCccee-cC--
Confidence 345669999999999865 4999999999998 778899988887654 79999999 999887653 211 11
Q ss_pred CCcChHHHHHhcCCCCcceEEEEEecCCCCC
Q 028756 151 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLS 181 (204)
Q Consensus 151 ~~~~~~~~~~l~~i~~~p~~~v~l~~~~~~~ 181 (204)
++.+...+.++++.|.++..+.+.|+++.+
T Consensus 263 -~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw 292 (435)
T PLN02268 263 -ELPEWKEEAISDLGVGIENKIALHFDSVFW 292 (435)
T ss_pred -CCCHHHHHHHHhCCccceeEEEEEeCCCCC
Confidence 344566788899999999999999999854
No 11
>PLN03000 amine oxidase
Probab=98.67 E-value=2.5e-07 Score=88.28 Aligned_cols=99 Identities=10% Similarity=0.028 Sum_probs=80.3
Q ss_pred CceEEeCcCcHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCcchhc--ccCCC
Q 028756 69 NKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD--VTGRP 146 (204)
Q Consensus 69 ~~~~vg~~Gm~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~--ll~~p 146 (204)
...+..++||++|+++|++.++ |++++.|++|++ .++++.|+..++ . ..+|+||+| +|...+.. +.=.|
T Consensus 371 G~~~~v~GG~~~LieaLa~~L~--I~Ln~~Vt~I~~--~~dgV~V~~~~~-~-~~AD~VIvT---VPlgVLk~~~I~F~P 441 (881)
T PLN03000 371 GDHCFLPGGNGRLVQALAENVP--ILYEKTVQTIRY--GSNGVKVIAGNQ-V-YEGDMVLCT---VPLGVLKNGSIKFVP 441 (881)
T ss_pred CceEEeCCCHHHHHHHHHhhCC--cccCCcEEEEEE--CCCeEEEEECCc-E-EEeceEEEc---CCHHHHhhCceeeCC
Confidence 3467889999999999999886 999999999998 788999986543 3 379999999 99887762 11011
Q ss_pred CCCCCCcChHHHHHhcCCCCcceEEEEEecCCCCC
Q 028756 147 PPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLS 181 (204)
Q Consensus 147 ~~~~~~~~~~~~~~l~~i~~~p~~~v~l~~~~~~~ 181 (204)
++.+...++++.+.|...-.+.+.|+++.+
T Consensus 442 -----pLP~~K~~AI~rL~~G~l~KViL~Fd~~FW 471 (881)
T PLN03000 442 -----ELPQRKLDCIKRLGFGLLNKVAMLFPYVFW 471 (881)
T ss_pred -----CCCHHHHHHHHcCCCcceEEEEEEeCCccc
Confidence 455566788999999999999999999865
No 12
>PRK07233 hypothetical protein; Provisional
Probab=98.64 E-value=1.2e-07 Score=83.56 Aligned_cols=97 Identities=20% Similarity=0.297 Sum_probs=78.4
Q ss_pred eEEeCcCcHHHHHHHhcCC---CCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCcchhcccCCCC
Q 028756 71 KYVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPP 147 (204)
Q Consensus 71 ~~vg~~Gm~sl~~~La~~l---~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p~ 147 (204)
.+..++||.+|+++|++.+ +.+|+++++|++|+. ++++|.+...+|+. ..+|+||+| +|.+.+..+++
T Consensus 190 ~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~--~~~~~~~~~~~~~~-~~ad~vI~a---~p~~~~~~ll~--- 260 (434)
T PRK07233 190 LGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVI--DGGGVTGVEVDGEE-EDFDAVIST---APPPILARLVP--- 260 (434)
T ss_pred EeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEE--cCCceEEEEeCCce-EECCEEEEC---CCHHHHHhhcC---
Confidence 4556899999999998865 578999999999997 67778655455544 479999999 99998888874
Q ss_pred CCCCCcChHHHHHhcCCCCcceEEEEEecCCCC
Q 028756 148 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPL 180 (204)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~~~p~~~v~l~~~~~~ 180 (204)
...+...+.++++.|.+++++.+.|++++
T Consensus 261 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 289 (434)
T PRK07233 261 ----DLPADVLARLRRIDYQGVVCMVLKLRRPL 289 (434)
T ss_pred ----CCcHHHHhhhcccCccceEEEEEEecCCC
Confidence 33345667788999999999999999874
No 13
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.56 E-value=3e-07 Score=79.58 Aligned_cols=110 Identities=20% Similarity=0.323 Sum_probs=81.5
Q ss_pred EEeCcCcHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCcchhc-ccCCCCCCC
Q 028756 72 YVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD-VTGRPPPLD 150 (204)
Q Consensus 72 ~vg~~Gm~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~-ll~~p~~~~ 150 (204)
+.+.+++..+.+.+++..+.+|+++++|++|+. .++++.+...+|+. ..||+||+| +|.+.+.. .+. |
T Consensus 205 ~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~--~~~~v~v~~~~g~~-~~ad~VI~a---~p~~~l~~i~~~-p---- 273 (450)
T PF01593_consen 205 TVGMGGLSLALALAAEELGGEIRLNTPVTRIER--EDGGVTVTTEDGET-IEADAVISA---VPPSVLKNILLL-P---- 273 (450)
T ss_dssp EEETTTTHHHHHHHHHHHGGGEESSEEEEEEEE--ESSEEEEEETTSSE-EEESEEEE----S-HHHHHTSEEE-S----
T ss_pred eecccchhHHHHHHHhhcCceeecCCcceeccc--cccccccccccceE-Eecceeeec---Cchhhhhhhhhc-c----
Confidence 344556666666666656678999999999998 77899999999875 479999999 99999885 332 1
Q ss_pred CCcChHHHHHhcCCCCcceEEEEEecCCCCCCC--CcceEEEecC
Q 028756 151 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSD--PSYQISYLNV 193 (204)
Q Consensus 151 ~~~~~~~~~~l~~i~~~p~~~v~l~~~~~~~~~--p~~g~~~~~~ 193 (204)
++.....+.++.+.|.++..+.+.|+++.+.. ...++.+.+.
T Consensus 274 -~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~ 317 (450)
T PF01593_consen 274 -PLPEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDG 317 (450)
T ss_dssp -TSHHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESS
T ss_pred -cccccccccccccccCcceeEEEeeecccccccccccceecccC
Confidence 33334567789999999999999999986533 3567776666
No 14
>PLN02568 polyamine oxidase
Probab=98.53 E-value=7.3e-07 Score=81.80 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=82.1
Q ss_pred ceEEeCcCcHHHHHHHhcCCC-CeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCcchhcccC-CCC
Q 028756 70 KKYVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTG-RPP 147 (204)
Q Consensus 70 ~~~vg~~Gm~sl~~~La~~l~-~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~-~p~ 147 (204)
..++..+|+++|+++|++.+. .+|++|++|++|++ .+++|.|.+.+|+.. .||+||+| +|...+..-+- ...
T Consensus 233 ~~~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~--~~~~v~V~~~dG~~~-~aD~VIvT---vPl~vL~~~~~~~~i 306 (539)
T PLN02568 233 EEITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEW--QDEPVKLHFADGSTM-TADHVIVT---VSLGVLKAGIGEDSG 306 (539)
T ss_pred CeEEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEE--eCCeEEEEEcCCCEE-EcCEEEEc---CCHHHHhhccccccc
Confidence 367789999999999999885 57999999999998 778899998888653 79999999 99887764110 000
Q ss_pred CCCCCcChHHHHHhcCCCCcceEEEEEecCCCCC
Q 028756 148 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLS 181 (204)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~~~p~~~v~l~~~~~~~ 181 (204)
....++.+...++++.+.|...-.+.+.|+++.+
T Consensus 307 ~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW 340 (539)
T PLN02568 307 LFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPD 340 (539)
T ss_pred eecCCCCHHHHHHHHhcCCceeeEEEEEecCCCC
Confidence 0011444455778899999999999999999853
No 15
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.40 E-value=1.5e-06 Score=74.73 Aligned_cols=98 Identities=13% Similarity=0.049 Sum_probs=84.9
Q ss_pred CCCceEEeCcCcHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCcchhcccCCC
Q 028756 67 GMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRP 146 (204)
Q Consensus 67 ~~~~~~vg~~Gm~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p 146 (204)
..+..++..+|-.+-++.|++....+|++++.|.+|++ ..+|..|...+|+. ..||+||+| +.++|++.||.
T Consensus 208 ~rp~wrtV~ggS~~yvq~laa~~~~~i~t~~~V~~l~r--lPdGv~l~~~~G~s-~rFD~vViA---th~dqAl~mL~-- 279 (447)
T COG2907 208 KRPTWRTVAGGSRAYVQRLAADIRGRIETRTPVCRLRR--LPDGVVLVNADGES-RRFDAVVIA---THPDQALALLD-- 279 (447)
T ss_pred CCCceeEcccchHHHHHHHhccccceeecCCceeeeee--CCCceEEecCCCCc-cccceeeee---cChHHHHHhcC--
Confidence 45677888999999999999998888999999999998 77888888888875 479999999 99999999997
Q ss_pred CCCCCCcChHHHHHhcCCCCcceEEEEEecC
Q 028756 147 PPLDLTFAPDLAVKLEEIPVNPCFALMLAFS 177 (204)
Q Consensus 147 ~~~~~~~~~~~~~~l~~i~~~p~~~v~l~~~ 177 (204)
+..|+-.+.+.++.|+..-+|+..+.
T Consensus 280 -----e~sp~e~qll~a~~Ys~n~aVlhtd~ 305 (447)
T COG2907 280 -----EPSPEERQLLGALRYSANTAVLHTDA 305 (447)
T ss_pred -----CCCHHHHHHHHhhhhhhceeEEeecc
Confidence 33455567899999999999988876
No 16
>PLN02676 polyamine oxidase
Probab=98.40 E-value=2.4e-06 Score=77.49 Aligned_cols=97 Identities=16% Similarity=0.097 Sum_probs=76.6
Q ss_pred CcCcHHHHHHHhcCC---------CCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCcchhc-ccC
Q 028756 75 VPGMNSICKALCHQP---------GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD-VTG 144 (204)
Q Consensus 75 ~~Gm~sl~~~La~~l---------~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~-ll~ 144 (204)
.+|+++|++.|++.+ +.+|++|++|++|+. .+++..|++.+|+.+ .+|+||+| +|...+.. .+.
T Consensus 220 ~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~--~~~gV~V~~~~G~~~-~a~~VIvt---vPl~vLk~~~I~ 293 (487)
T PLN02676 220 PRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISY--SKNGVTVKTEDGSVY-RAKYVIVS---VSLGVLQSDLIK 293 (487)
T ss_pred CCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEE--cCCcEEEEECCCCEE-EeCEEEEc---cChHHhccCceE
Confidence 679999999999865 256999999999998 778899998888654 79999999 88765543 111
Q ss_pred CCCCCCCCcChHHHHHhcCCCCcceEEEEEecCCCCC
Q 028756 145 RPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLS 181 (204)
Q Consensus 145 ~p~~~~~~~~~~~~~~l~~i~~~p~~~v~l~~~~~~~ 181 (204)
- ..++.+...++++.+.|...--+.+.|++|.+
T Consensus 294 F----~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW 326 (487)
T PLN02676 294 F----KPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFW 326 (487)
T ss_pred E----eCCCCHHHHHHHHhCCceeeEEEEEEeCCCCC
Confidence 0 11344455678899999999999999999866
No 17
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.39 E-value=2.1e-06 Score=76.07 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=89.2
Q ss_pred CceEEeCcCcHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCC-CCcccccCEEEecCCCCCCcchhcccCCCC
Q 028756 69 NKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD-GQSLGQFNGVVASDKNVVSPRFRDVTGRPP 147 (204)
Q Consensus 69 ~~~~vg~~Gm~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~-G~~~~~~d~VVla~~~~pa~~~~~ll~~p~ 147 (204)
.+.+.-.+||..|+++++++++.+|+++++|.+|.. .+++.+|+..+ |+ . .+|.+|+| +|...+.++.=.|
T Consensus 199 ~~~~~~~GGmd~la~Afa~ql~~~I~~~~~V~rI~q--~~~gV~Vt~~~~~~-~-~ad~~i~t---iPl~~l~qI~f~P- 270 (450)
T COG1231 199 TQMLQRLGGMDQLAEAFAKQLGTRILLNEPVRRIDQ--DGDGVTVTADDVGQ-Y-VADYVLVT---IPLAILGQIDFAP- 270 (450)
T ss_pred chhhccCccHHHHHHHHHHHhhceEEecCceeeEEE--cCCeEEEEeCCcce-E-EecEEEEe---cCHHHHhhcccCC-
Confidence 344444599999999999999989999999999997 88899998887 54 3 68999999 8877665553211
Q ss_pred CCCCCcChHHHHHhcCCCCcceEEEEEecCCCCCC-CC-cceEEEecCc
Q 028756 148 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS-DP-SYQISYLNVL 194 (204)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~~~p~~~v~l~~~~~~~~-~p-~~g~~~~~~~ 194 (204)
.+.++..+++..++|.+|.-..+.|++|.+. -. +.|..+.|..
T Consensus 271 ----~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~ 315 (450)
T COG1231 271 ----LLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLG 315 (450)
T ss_pred ----CCCHHHHHHhcCcCcchheeeeeecCchhhhhcccCCceEeecCC
Confidence 3556888899999999999999999999763 22 4455554444
No 18
>PLN02976 amine oxidase
Probab=98.36 E-value=3.1e-06 Score=84.12 Aligned_cols=102 Identities=11% Similarity=0.083 Sum_probs=79.0
Q ss_pred ceEEeCcCcHHHHHHHhcCCCCeeecCeeEEeEEeec--------CCCCEEEEeCCCCcccccCEEEecCCCCCCcchhc
Q 028756 70 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLE--------DKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD 141 (204)
Q Consensus 70 ~~~vg~~Gm~sl~~~La~~l~~~i~~~~~V~~l~~~~--------~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ 141 (204)
..|+..+||.+|+++|++.++ |++|+.|++|.+.. .++++.|.+.+|+.+ .||+||+| +|...+..
T Consensus 927 ~~~rIkGGYqqLIeALAe~L~--IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetf-tADaVIVT---VPLGVLKa 1000 (1713)
T PLN02976 927 AHCMIKGGYSNVVESLAEGLD--IHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEF-LGDAVLIT---VPLGCLKA 1000 (1713)
T ss_pred ceEEeCCCHHHHHHHHHhhCC--eecCCeEEEEEecCCcccccccCCCcEEEEECCCCEE-EeceEEEe---CCHHHhhh
Confidence 578899999999999999876 99999999998711 146799988888654 79999999 99876542
Q ss_pred c-cCCCCCCCCCcChHHHHHhcCCCCcceEEEEEecCCCCC
Q 028756 142 V-TGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLS 181 (204)
Q Consensus 142 l-l~~p~~~~~~~~~~~~~~l~~i~~~p~~~v~l~~~~~~~ 181 (204)
- +. ..+++.+...++++.+.|...--+.+.|+++.+
T Consensus 1001 g~I~----FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW 1037 (1713)
T PLN02976 1001 ETIK----FSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFW 1037 (1713)
T ss_pred cccc----cCCcccHHHHHHHHhhccccceEEEEEeCCccc
Confidence 1 11 011344445677899999999999999999866
No 19
>PRK07208 hypothetical protein; Provisional
Probab=98.31 E-value=5.1e-06 Score=74.73 Aligned_cols=96 Identities=14% Similarity=0.094 Sum_probs=74.6
Q ss_pred CcCcHHHHHHHhcCC---CCeeecCeeEEeEEeecCCCCEE--EEe--CCCCc-ccccCEEEecCCCCCCcchhcccCCC
Q 028756 75 VPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWS--VSG--LDGQS-LGQFNGVVASDKNVVSPRFRDVTGRP 146 (204)
Q Consensus 75 ~~Gm~sl~~~La~~l---~~~i~~~~~V~~l~~~~~~~~w~--l~~--~~G~~-~~~~d~VVla~~~~pa~~~~~ll~~p 146 (204)
++||++|++.|++.+ +.+|++|++|++|.. ++++|. +.. .+|+. ...+|+||+| +|++.+..++. |
T Consensus 214 ~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~--~~~~~v~~~~~~~~~g~~~~~~ad~VI~a---~p~~~l~~~l~-~ 287 (479)
T PRK07208 214 KLGPGQLWETAAEKLEALGGKVVLNAKVVGLHH--DGDGRIAVVVVNDTDGTEETVTADQVISS---MPLRELVAALD-P 287 (479)
T ss_pred CCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEE--cCCcEEEEEEEEcCCCCEEEEEcCEEEEC---CCHHHHHHhcC-C
Confidence 799999999998765 578999999999997 666663 322 23431 2368999999 99999988875 2
Q ss_pred CCCCCCcChHHHHHhcCCCCcceEEEEEecCCCCC
Q 028756 147 PPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLS 181 (204)
Q Consensus 147 ~~~~~~~~~~~~~~l~~i~~~p~~~v~l~~~~~~~ 181 (204)
.+.++..+.++.++|.++.++.++|+++..
T Consensus 288 -----~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~ 317 (479)
T PRK07208 288 -----PPPPEVRAAAAGLRYRDFITVGLLVKELNL 317 (479)
T ss_pred -----CCCHHHHHHHhCCCcceeEEEEEEecCCCC
Confidence 234566778889999999999999998743
No 20
>PLN02612 phytoene desaturase
Probab=98.20 E-value=1.5e-05 Score=73.64 Aligned_cols=102 Identities=11% Similarity=0.132 Sum_probs=71.9
Q ss_pred HHHHHHHhcC---CCCeeecCeeEEeEEeecCCCCE--EEEeCCCCcccccCEEEecCCCCCCcchhcccCCCCCCCCCc
Q 028756 79 NSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLW--SVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTF 153 (204)
Q Consensus 79 ~sl~~~La~~---l~~~i~~~~~V~~l~~~~~~~~w--~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p~~~~~~~ 153 (204)
..+++.|++. ++.+|++|++|++|+. +++++ .+...+|+.+ .+|+||+| +|+..+..|++ .. ..
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~--~~~g~v~~v~~~~G~~~-~ad~VI~a---~p~~~l~~Ll~--~~---~~ 376 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIEL--NDDGTVKHFLLTNGSVV-EGDVYVSA---TPVDILKLLLP--DQ---WK 376 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEE--CCCCcEEEEEECCCcEE-ECCEEEEC---CCHHHHHHhCc--ch---hc
Confidence 4555655542 5789999999999987 55553 3555567543 79999999 99888877764 11 11
Q ss_pred ChHHHHHhcCCCCcceEEEEEecCCCCCCCCcceEEEec
Q 028756 154 APDLAVKLEEIPVNPCFALMLAFSEPLSSDPSYQISYLN 192 (204)
Q Consensus 154 ~~~~~~~l~~i~~~p~~~v~l~~~~~~~~~p~~g~~~~~ 192 (204)
...+.+.++++.+.|+.++.+.|+++++ .+.++..+.+
T Consensus 377 ~~~~~~~l~~l~~~~v~~v~l~~dr~~~-~~~~~~~~~~ 414 (567)
T PLN02612 377 EIPYFKKLDKLVGVPVINVHIWFDRKLK-NTYDHLLFSR 414 (567)
T ss_pred CcHHHHHHHhcCCCCeEEEEEEECcccC-CCCCceeecC
Confidence 1245666777889999999999999976 3556655543
No 21
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.19 E-value=7.1e-06 Score=74.22 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=73.4
Q ss_pred eEEeCcCcHHHHHHHhcCC---CCeeecCeeEEeEEeecCCC--CEEEEeCC--C--CcccccCEEEecCCCCCCcchhc
Q 028756 71 KYVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKN--LWSVSGLD--G--QSLGQFNGVVASDKNVVSPRFRD 141 (204)
Q Consensus 71 ~~vg~~Gm~sl~~~La~~l---~~~i~~~~~V~~l~~~~~~~--~w~l~~~~--G--~~~~~~d~VVla~~~~pa~~~~~ 141 (204)
.|...+||++|+++|++.+ +.+|+++++|++|.. +++ .|.+..++ | +. ..+|+||++ +|+..+..
T Consensus 224 ~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~--~~~~~~gv~~~~~~~~~~~~-~~ad~VI~~---~~~~~~~~ 297 (492)
T TIGR02733 224 LWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHT--KGGRAGWVVVVDSRKQEDLN-VKADDVVAN---LPPQSLLE 297 (492)
T ss_pred ceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEE--eCCeEEEEEEecCCCCceEE-EECCEEEEC---CCHHHHHH
Confidence 4668999999999999876 688999999999987 444 24443322 1 23 369999999 99998888
Q ss_pred ccCCCCCCCCCcChHHHHHhcCCCCcc-eEEEEEecCCC
Q 028756 142 VTGRPPPLDLTFAPDLAVKLEEIPVNP-CFALMLAFSEP 179 (204)
Q Consensus 142 ll~~p~~~~~~~~~~~~~~l~~i~~~p-~~~v~l~~~~~ 179 (204)
|+.. + .+.+++.+.+++++|++ .+++.+++++.
T Consensus 298 ll~~--~---~~~~~~~~~~~~~~~s~~~~~v~l~~~~~ 331 (492)
T TIGR02733 298 LLGP--L---GLPPGYRKRLKKLPEPSGAFVFYLGVKRA 331 (492)
T ss_pred hcCc--c---cCCHHHHHHHhcCCCCCceEEEEEeeccc
Confidence 8752 1 34456777788999887 45788999873
No 22
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.12 E-value=2.3e-05 Score=70.04 Aligned_cols=94 Identities=14% Similarity=0.205 Sum_probs=64.3
Q ss_pred cHHHHHHHhcC---CCCeeecCeeEEeEEeecCCCC----EEEEeCCCCc--ccccCEEEecCCCCCCcchhcccCCCCC
Q 028756 78 MNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNL----WSVSGLDGQS--LGQFNGVVASDKNVVSPRFRDVTGRPPP 148 (204)
Q Consensus 78 m~sl~~~La~~---l~~~i~~~~~V~~l~~~~~~~~----w~l~~~~G~~--~~~~d~VVla~~~~pa~~~~~ll~~p~~ 148 (204)
+..+++.|.+. .+.+|++|++|++|.. .+++ +++...+|+. ...+|+||+| +|++.+..||. ..
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~--~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a---~p~~~~~~lL~--~~ 284 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVL--NEDGSVKHFVLADGEGQRRFEVTADAYVSA---MPVDIFKLLLP--QP 284 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEE--CCCCCEEEEEEecCCCCceeEEECCEEEEc---CCHHHHHhhCc--hh
Confidence 44555555543 3688999999999986 3333 3343222221 2368999999 99988888864 11
Q ss_pred CCCCcChHHHHHhcCCCCcceEEEEEecCCCCC
Q 028756 149 LDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLS 181 (204)
Q Consensus 149 ~~~~~~~~~~~~l~~i~~~p~~~v~l~~~~~~~ 181 (204)
.....+.+.+++++|.++..+.+.|++++.
T Consensus 285 ---~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~ 314 (453)
T TIGR02731 285 ---WKQMPFFQKLNGLEGVPVINVHIWFDRKLT 314 (453)
T ss_pred ---hhcCHHHHHhhcCCCCcEEEEEEEEccccC
Confidence 001245677888899999999999999865
No 23
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.07 E-value=1.7e-05 Score=71.75 Aligned_cols=92 Identities=11% Similarity=0.070 Sum_probs=65.9
Q ss_pred HHHHHHHhcCCCCeeecCeeEEeEEeecCC--CCEE-E---EeCCC--CcccccCEEEecCCCCCCcchhcccCCCCCCC
Q 028756 79 NSICKALCHQPGVESKFGVGVGRFEWLEDK--NLWS-V---SGLDG--QSLGQFNGVVASDKNVVSPRFRDVTGRPPPLD 150 (204)
Q Consensus 79 ~sl~~~La~~l~~~i~~~~~V~~l~~~~~~--~~w~-l---~~~~G--~~~~~~d~VVla~~~~pa~~~~~ll~~p~~~~ 150 (204)
+.++++|.+ .+.+|+++++|++|+. ++ ++|. + ...+| .....+|+||+| +|++.+.+|+.. .
T Consensus 223 ~pl~~~L~~-~Gg~i~~~~~V~~I~~--~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA---~p~~~~~~Ll~~--~-- 292 (474)
T TIGR02732 223 KPILEYIEA-RGGKFHLRHKVREIKY--EKSSDGSTRVTGLIMSKPEGKKVIKADAYVAA---CDVPGIKRLLPQ--E-- 292 (474)
T ss_pred HHHHHHHHH-CCCEEECCCEEEEEEE--ecCCCCceeEEEEEEecCCcceEEECCEEEEC---CChHHHHhhCCh--h--
Confidence 447777776 5688999999999986 33 3452 3 23333 122368999999 999999999851 1
Q ss_pred CCcChHHHHHhcCCCCcceEEEEEecCCCCC
Q 028756 151 LTFAPDLAVKLEEIPVNPCFALMLAFSEPLS 181 (204)
Q Consensus 151 ~~~~~~~~~~l~~i~~~p~~~v~l~~~~~~~ 181 (204)
.-.....+.+..+.|.||.+|.+.|++++.
T Consensus 293 -~~~~~~~~~l~~l~~~pi~~v~l~~~~~v~ 322 (474)
T TIGR02732 293 -WRQFEEFDNIYKLDAVPVATVQLRYDGWVT 322 (474)
T ss_pred -hhcCHHHhhHhcCCCCCeEEEEEEeccccc
Confidence 011235667889999999999999998654
No 24
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.97 E-value=1.2e-05 Score=70.70 Aligned_cols=111 Identities=16% Similarity=0.202 Sum_probs=87.9
Q ss_pred CCceEEeCcCcHHHHHHHhcCCC---CeeecCeeEEeEEeecCCCCEEEEeC--CCCcccccCEEEecCCCCCCcchhcc
Q 028756 68 MNKKYVGVPGMNSICKALCHQPG---VESKFGVGVGRFEWLEDKNLWSVSGL--DGQSLGQFNGVVASDKNVVSPRFRDV 142 (204)
Q Consensus 68 ~~~~~vg~~Gm~sl~~~La~~l~---~~i~~~~~V~~l~~~~~~~~w~l~~~--~G~~~~~~d~VVla~~~~pa~~~~~l 142 (204)
..+.|...+||..++++|.+.|+ +.|.++-.+..+.. ...+.|.++.. ++.....++.+..| +|++.++.|
T Consensus 238 ~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk-~~~~~~~~tl~~~~~~~~~~~~~~~~t---~~~~k~a~l 313 (491)
T KOG1276|consen 238 KWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSK-SRSGNWSLTLVDHSGTQRVVVSYDAAT---LPAVKLAKL 313 (491)
T ss_pred ccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccc-cccCCceeEeEcCCCceeeeccccccc---cchHHhhhh
Confidence 45678999999999999999886 44677778888876 34567987664 45433457777778 999999999
Q ss_pred cCCCCCCCCCcChHHHHHhcCCCCcceEEEEEecCCC-CCCCCcceEEE
Q 028756 143 TGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEP-LSSDPSYQISY 190 (204)
Q Consensus 143 l~~p~~~~~~~~~~~~~~l~~i~~~p~~~v~l~~~~~-~~~~p~~g~~~ 190 (204)
+. ...+.++.+|.+|+|.|+.+|.+.|+.+ .. .|.+||.+
T Consensus 314 l~-------~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~-~pl~GFG~ 354 (491)
T KOG1276|consen 314 LR-------GLQNSLSNALSEIPYVPVAVVNTYYPKEKID-LPLQGFGL 354 (491)
T ss_pred cc-------ccchhhhhhhhcCCCCceEEEEEeccCcccc-ccccccee
Confidence 86 5667789999999999999999999986 44 57777775
No 25
>PLN02487 zeta-carotene desaturase
Probab=97.49 E-value=0.00062 Score=63.06 Aligned_cols=101 Identities=7% Similarity=0.014 Sum_probs=69.9
Q ss_pred EEeCcCcHH-HHHHHhcCC---CCeeecCeeEEeEEeecCCCC----EEEEe---CCCCcccccCEEEecCCCCCCcchh
Q 028756 72 YVGVPGMNS-ICKALCHQP---GVESKFGVGVGRFEWLEDKNL----WSVSG---LDGQSLGQFNGVVASDKNVVSPRFR 140 (204)
Q Consensus 72 ~vg~~Gm~s-l~~~La~~l---~~~i~~~~~V~~l~~~~~~~~----w~l~~---~~G~~~~~~d~VVla~~~~pa~~~~ 140 (204)
....+|+.+ |++.+++.+ +.+|+++++|.+|.....+++ +.+.. .+++. ..+|+||+| +|.+.+.
T Consensus 287 ~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~-~~aD~VV~A---~p~~~~~ 362 (569)
T PLN02487 287 RMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEI-VKADAYVAA---CDVPGIK 362 (569)
T ss_pred eecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceE-EECCEEEEC---CCHHHHH
Confidence 344788985 777666543 689999999999987211233 23444 22323 368999999 9999998
Q ss_pred cccCCCCCCCCCcChHHHHHhcCCCCcceEEEEEecCCCCC
Q 028756 141 DVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLS 181 (204)
Q Consensus 141 ~ll~~p~~~~~~~~~~~~~~l~~i~~~p~~~v~l~~~~~~~ 181 (204)
.|+. .. ....+ ..+.+..+.+.||.++.+-|++++.
T Consensus 363 ~Llp--~~--~~~~~-~~~~l~~L~~~pi~tv~L~~d~~v~ 398 (569)
T PLN02487 363 RLLP--EQ--WREYE-FFDNIYKLVGVPVVTVQLRYNGWVT 398 (569)
T ss_pred HhCC--ch--hhccH-HHhHHhcCCCeeEEEEEEEeccccc
Confidence 8874 11 11112 2567888899999999999998754
No 26
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.45 E-value=0.0009 Score=60.67 Aligned_cols=96 Identities=19% Similarity=0.142 Sum_probs=68.0
Q ss_pred eEEeCcCcHHHHHHHhcC---CCCeeecCeeEEeEEeecCCCC-EEEEeCCCCcccccCEEEecCCCCCCcchhcccCCC
Q 028756 71 KYVGVPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRP 146 (204)
Q Consensus 71 ~~vg~~Gm~sl~~~La~~---l~~~i~~~~~V~~l~~~~~~~~-w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p 146 (204)
.|...+|+..++++|++. .+++|+++++|++|.. ++++ |.|...+|+.+ .+|.||+| ++.+.+...|- +
T Consensus 211 ~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~--~~~~~~~V~~~~g~~~-~ad~VI~a---~~~~~~~~~l~-~ 283 (502)
T TIGR02734 211 VWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIET--EGGRATAVHLADGERL-DADAVVSN---ADLHHTYRRLL-P 283 (502)
T ss_pred EEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEe--eCCEEEEEEECCCCEE-ECCEEEEC---CcHHHHHHHhc-C
Confidence 456778999999999874 4688999999999986 4443 67877777654 79999999 88877765431 2
Q ss_pred CCCCCCcC-hHHHHHhcCCCC-cceEEEEEecC
Q 028756 147 PPLDLTFA-PDLAVKLEEIPV-NPCFALMLAFS 177 (204)
Q Consensus 147 ~~~~~~~~-~~~~~~l~~i~~-~p~~~v~l~~~ 177 (204)
. ... +...+.+++.++ .+++++.++++
T Consensus 284 ~----~~~~~~~~~~~~~~~~s~s~~~~~lgl~ 312 (502)
T TIGR02734 284 N----HPRRRYPAARLSRKRPSPSLFVLYFGLL 312 (502)
T ss_pred c----cccccccccccccCCcCCeeeEEEEeec
Confidence 1 111 123345566664 47777888887
No 27
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=96.98 E-value=0.004 Score=56.51 Aligned_cols=100 Identities=12% Similarity=0.091 Sum_probs=69.4
Q ss_pred ceEEeCcCcHHHHHHHhcCC---CCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCcchh-cccCC
Q 028756 70 KKYVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFR-DVTGR 145 (204)
Q Consensus 70 ~~~vg~~Gm~sl~~~La~~l---~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~-~ll~~ 145 (204)
..|...+|+..++++|.+.+ +++|+++++|++|.. ..++.+.+...+|+.+ .+|.||++ +.+..+. .|++
T Consensus 220 g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~-~ad~vV~a---~~~~~~~~~Ll~- 293 (493)
T TIGR02730 220 GINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKI-YAKRIVSN---ATRWDTFGKLLK- 293 (493)
T ss_pred eEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEE-EcCEEEEC---CChHHHHHHhCC-
Confidence 34678899999999887754 689999999999986 2334466777777654 68999998 7555554 4553
Q ss_pred CCCCCCCcChHHHHHhcCCCCc-ceEEEEEecCCC
Q 028756 146 PPPLDLTFAPDLAVKLEEIPVN-PCFALMLAFSEP 179 (204)
Q Consensus 146 p~~~~~~~~~~~~~~l~~i~~~-p~~~v~l~~~~~ 179 (204)
.. .+.+.....++++++. +++++.++.+.+
T Consensus 294 -~~---~~~~~~~~~~~~~~~s~s~~~~~l~l~~~ 324 (493)
T TIGR02730 294 -AE---NLPKKEKNWQRNYVKSPSFLSLHLGVKAD 324 (493)
T ss_pred -cc---ccchhhHHHHhhccCCCceEEEEEEecCc
Confidence 11 1223344455566655 588889998875
No 28
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=96.83 E-value=0.0077 Score=52.93 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=50.5
Q ss_pred CCceEEeCcCcHHHHHHHhcCCCCeeecCeeEEeEEeecCCCC--EEEEeCC--CCcccccCEEEecCCCCCCcch
Q 028756 68 MNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNL--WSVSGLD--GQSLGQFNGVVASDKNVVSPRF 139 (204)
Q Consensus 68 ~~~~~vg~~Gm~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~--w~l~~~~--G~~~~~~d~VVla~~~~pa~~~ 139 (204)
....|...||...+++.|.+..+.++ ++++|++|.+...++. |.|...+ +.....||.||+| +|-.+.
T Consensus 117 ~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIA---tPl~~~ 188 (368)
T PF07156_consen 117 TGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIA---TPLQQS 188 (368)
T ss_pred cCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEEC---CCcccc
Confidence 45679999999999999999888888 9999999943122222 6665543 3333468999999 887543
No 29
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.55 E-value=0.016 Score=52.08 Aligned_cols=107 Identities=16% Similarity=0.221 Sum_probs=75.4
Q ss_pred EeCcCcHHHHHHHhcCCC-C--------eeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCcchhc--
Q 028756 73 VGVPGMNSICKALCHQPG-V--------ESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRD-- 141 (204)
Q Consensus 73 vg~~Gm~sl~~~La~~l~-~--------~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~-- 141 (204)
..+.|...+.+.|++.+. . +++++++|..|.+ ...+...|+..||+. ..||+|||| ++--.+..
T Consensus 217 ~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~-~~~~~v~l~c~dg~v-~~adhVIvT---vsLGvLk~~h 291 (498)
T KOG0685|consen 217 WNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINW-KNTGEVKLRCSDGEV-FHADHVIVT---VSLGVLKEQH 291 (498)
T ss_pred echhHHHHHHHHHhccCCCcchhcCchhhhcccccceeecc-CCCCcEEEEEeCCcE-EeccEEEEE---eechhhhhhh
Confidence 335578888998888653 3 3455599999998 233567788889976 489999999 65433322
Q ss_pred --ccCCCCCCCCCcChHHHHHhcCCCCcceEEEEEecCCCCCCCCcceEEE
Q 028756 142 --VTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSDPSYQISY 190 (204)
Q Consensus 142 --ll~~p~~~~~~~~~~~~~~l~~i~~~p~~~v~l~~~~~~~~~p~~g~~~ 190 (204)
|+. | ++..+=.++++.+.+-..--+.|-|++|.+...+.++.+
T Consensus 292 ~~lF~-P-----~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~ 336 (498)
T KOG0685|consen 292 HKLFV-P-----PLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQL 336 (498)
T ss_pred hhhcC-C-----CCCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEE
Confidence 442 1 333455688999999999999999999865344666553
No 30
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.40 E-value=0.0051 Score=48.47 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=39.5
Q ss_pred EeCcCcHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 73 VGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 73 vg~~Gm~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
....-+....+.+++..+.+++++++|+++++ .+++|.|+..+|+.+ .+|.||+|
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~--~~~~w~v~~~~~~~~-~a~~VVlA 133 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRR--DGDGWTVTTRDGRTI-RADRVVLA 133 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEE--ETTTEEEEETTS-EE-EEEEEEE-
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEE--eccEEEEEEEeccee-eeeeEEEe
Confidence 33333445566667667777999999999998 777899999988544 69999999
No 31
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.12 E-value=0.037 Score=50.63 Aligned_cols=100 Identities=10% Similarity=0.119 Sum_probs=74.7
Q ss_pred ceEEeCcCcHHHHHHHhcCCCCeeecCeeEEeEEeecCCCC-EEEEeCCCCcccccCEEEecCCCCCCcchhc-ccCCCC
Q 028756 70 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVSPRFRD-VTGRPP 147 (204)
Q Consensus 70 ~~~vg~~Gm~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~-w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~-ll~~p~ 147 (204)
.+.+..+|+..++..|++.++ |+++++|..|.. .+++ ..++.+++.. ..+|+||+| +|.+.+.. ...
T Consensus 210 ~~~~~~~G~~~v~~~la~~l~--I~~~~~v~~i~~--~~~~~~~~~~~~~~~-~~~d~vvvt---~pl~vLk~~~i~--- 278 (501)
T KOG0029|consen 210 IHLLMKGGYEPVVNSLAEGLD--IHLNKRVRKIKY--GDDGAVKVTVETGDG-YEADAVVVT---VPLGVLKSGLIE--- 278 (501)
T ss_pred chhHhhCCccHHHhhcCCCcc--eeeceeeEEEEE--ecCCceEEEEECCCe-eEeeEEEEE---ccHHHhccCcee---
Confidence 467889999999999999555 999999999997 4444 3455454443 379999999 88876654 111
Q ss_pred CCCCCcChHHHHHhcCCCCcceEEEEEecCCCCC
Q 028756 148 PLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLS 181 (204)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~~~p~~~v~l~~~~~~~ 181 (204)
..+++.....++++++...+.--+++-|+...|
T Consensus 279 -F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW 311 (501)
T KOG0029|consen 279 -FSPPLPRWKQEAIDRLGFGLVNKVILEFPRVFW 311 (501)
T ss_pred -eCCCCcHHHHHHHHhcCCCceeEEEEEeccccC
Confidence 011344456788999999999999999999866
No 32
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.47 E-value=0.031 Score=50.89 Aligned_cols=60 Identities=23% Similarity=0.266 Sum_probs=47.4
Q ss_pred CceEEeCcCcHHHHHHHhcCC---CCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 69 NKKYVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 69 ~~~~vg~~Gm~sl~~~La~~l---~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
...+...+||.+|+++|++.+ +++|+++++|++|.- ..+++-.+...+|.. ..+|.||.+
T Consensus 214 ~G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~-~~ad~vv~~ 276 (487)
T COG1233 214 GGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGEN-IEADAVVSN 276 (487)
T ss_pred CCeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccce-eccceeEec
Confidence 346778899999999999854 689999999999986 233457777777733 478999988
No 33
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=94.81 E-value=0.088 Score=47.46 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=44.1
Q ss_pred EeCcCcHHHHHHHhc---CCCCeeecCeeEEeEEeecCCCC--EEEEeCCCCcccccCEEEec
Q 028756 73 VGVPGMNSICKALCH---QPGVESKFGVGVGRFEWLEDKNL--WSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 73 vg~~Gm~sl~~~La~---~l~~~i~~~~~V~~l~~~~~~~~--w~l~~~~G~~~~~~d~VVla 130 (204)
...+||..|+++|++ ..+.+++++++|++|.. ++++ +.|...+|+.+ .++.||+.
T Consensus 226 yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~--~~~g~~~~V~~~~Ge~i-~a~~VV~~ 285 (443)
T PTZ00363 226 YPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVF--DENGKVCGVKSEGGEVA-KCKLVICD 285 (443)
T ss_pred eeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEE--cCCCeEEEEEECCCcEE-ECCEEEEC
Confidence 337999999999984 45788999999999986 4434 67888788654 68999987
No 34
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=94.47 E-value=0.19 Score=45.13 Aligned_cols=64 Identities=14% Similarity=0.269 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCCCeeecCeeEEeEEeecCCC-CEEEEeCCCCcccccCEEEecCCCCCCcchhcccCCC
Q 028756 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKN-LWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRP 146 (204)
Q Consensus 79 ~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~-~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~~p 146 (204)
.++++.+.+. +.++++|++|+.|++ .++ .+.+.+.+|+..-.++.||.+ .+.-+..++++.+.+
T Consensus 157 ~~l~e~a~~~-g~~i~ln~eV~~i~~--~~dg~~~~~~~~g~~~~~ak~Vin~-AGl~Ad~la~~~g~~ 221 (429)
T COG0579 157 RALAEEAQAN-GVELRLNTEVTGIEK--QSDGVFVLNTSNGEETLEAKFVINA-AGLYADPLAQMAGIP 221 (429)
T ss_pred HHHHHHHHHc-CCEEEecCeeeEEEE--eCCceEEEEecCCcEEEEeeEEEEC-CchhHHHHHHHhCCC
Confidence 3444444443 689999999999998 666 466777777641368999997 455566677777654
No 35
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=93.97 E-value=0.15 Score=38.94 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=29.0
Q ss_pred ecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 94 KFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 94 ~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
+...+|+.|++ .+++|.|...+|..+ .||+||||
T Consensus 119 ~~~~~V~~i~~--~~~~~~v~~~~g~~~-~~d~VvLa 152 (156)
T PF13454_consen 119 HVRAEVVDIRR--DDDGYRVVTADGQSI-RADAVVLA 152 (156)
T ss_pred EEeeEEEEEEE--cCCcEEEEECCCCEE-EeCEEEEC
Confidence 35669999998 888999998888765 89999999
No 36
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.91 E-value=0.1 Score=44.04 Aligned_cols=49 Identities=27% Similarity=0.368 Sum_probs=37.9
Q ss_pred cHHHHHHHhcC---CCCeeecCeeEEeEEeecCCCCEE-EEeCCCCcccccCEEEec
Q 028756 78 MNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWS-VSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 78 m~sl~~~La~~---l~~~i~~~~~V~~l~~~~~~~~w~-l~~~~G~~~~~~d~VVla 130 (204)
...++++|.+. .+++++.+++|++|.. ++++|+ |.+.+|+ + .+|.||+|
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~v~gv~~~~g~-i-~ad~vV~a 198 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDV--DGGRVTGVRTSDGE-I-RADRVVLA 198 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEE--ETTEEEEEEETTEE-E-EECEEEE-
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhh--cccccccccccccc-c-ccceeEec
Confidence 45566655543 4789999999999998 788898 9998886 4 78999999
No 37
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=93.51 E-value=0.14 Score=45.37 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=47.7
Q ss_pred cCcHHHHHHHhcCC---CCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCc
Q 028756 76 PGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSP 137 (204)
Q Consensus 76 ~Gm~sl~~~La~~l---~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~ 137 (204)
..-+.+++.|.+.+ +++|+++++|.+++. .+.+..|.+.+|+.+ .+|.+|||.-+..-|
T Consensus 108 dkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~--~~~~f~l~t~~g~~i-~~d~lilAtGG~S~P 169 (408)
T COG2081 108 DKASPIVDALLKELEALGVTIRTRSRVSSVEK--DDSGFRLDTSSGETV-KCDSLILATGGKSWP 169 (408)
T ss_pred cchHHHHHHHHHHHHHcCcEEEecceEEeEEe--cCceEEEEcCCCCEE-EccEEEEecCCcCCC
Confidence 45567888887764 599999999999997 677999999998643 799999996665555
No 38
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=93.43 E-value=0.078 Score=48.88 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=44.4
Q ss_pred ccCCCCceEEeCcCcHHHHHHHhcCCC--CeeecCeeEEeEEeecC---CCCEEEEeCC-CC-cccccCEEEec
Q 028756 64 QQDGMNKKYVGVPGMNSICKALCHQPG--VESKFGVGVGRFEWLED---KNLWSVSGLD-GQ-SLGQFNGVVAS 130 (204)
Q Consensus 64 ~~~~~~~~~vg~~Gm~sl~~~La~~l~--~~i~~~~~V~~l~~~~~---~~~w~l~~~~-G~-~~~~~d~VVla 130 (204)
+.+.+.+.|....-|..-.+..++..+ ..|++||+|+++++..+ .++|.|++.+ |+ ....||+||+|
T Consensus 72 p~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~Vvva 145 (531)
T PF00743_consen 72 PFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVA 145 (531)
T ss_dssp -HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEc
Confidence 334455567666556666666666444 57999999999997211 2469998764 32 22369999999
No 39
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=93.13 E-value=0.25 Score=43.57 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCC-CeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 79 NSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 79 ~sl~~~La~~l~-~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
..|.+.|.+.+. ..++++++|++|+. .+++|.+.+.+|.. ..+|.||.||
T Consensus 105 ~~l~~~L~~~~~~~~v~~~~~v~~i~~--~~~~~~v~~~~g~~-~~ad~vVgAD 155 (414)
T TIGR03219 105 ADFLDALLKHLPEGIASFGKRATQIEE--QAEEVQVLFTDGTE-YRCDLLIGAD 155 (414)
T ss_pred HHHHHHHHHhCCCceEEcCCEEEEEEe--cCCcEEEEEcCCCE-EEeeEEEECC
Confidence 357778887763 56899999999987 77889999888865 4799999994
No 40
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=92.92 E-value=0.35 Score=44.31 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCCCeeecCeeEEeEEeecC-CCCEEEE---eCCCC-cccccCEEEecCCCCCCcchhcccC
Q 028756 79 NSICKALCHQPGVESKFGVGVGRFEWLED-KNLWSVS---GLDGQ-SLGQFNGVVASDKNVVSPRFRDVTG 144 (204)
Q Consensus 79 ~sl~~~La~~l~~~i~~~~~V~~l~~~~~-~~~w~l~---~~~G~-~~~~~d~VVla~~~~pa~~~~~ll~ 144 (204)
.+|++++.+..+++++++++|+.|++ . +++|++. ..+|+ ....+|.||+| .+.-+..+++.++
T Consensus 188 ~aL~~~l~~~~Gv~i~~~~~V~~I~~--~~d~~w~v~v~~t~~g~~~~i~Ad~VV~A-AGawS~~La~~~G 255 (497)
T PRK13339 188 RKLAKHLESHPNAQVKYNHEVVDLER--LSDGGWEVTVKDRNTGEKREQVADYVFIG-AGGGAIPLLQKSG 255 (497)
T ss_pred HHHHHHHHhCCCcEEEeCCEEEEEEE--CCCCCEEEEEEecCCCceEEEEcCEEEEC-CCcchHHHHHHcC
Confidence 44555554433688999999999987 5 7789886 33442 11379999998 2223333444444
No 41
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=92.70 E-value=0.23 Score=43.30 Aligned_cols=49 Identities=20% Similarity=0.414 Sum_probs=38.1
Q ss_pred HHHHHHHhcCC--CCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 79 NSICKALCHQP--GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 79 ~sl~~~La~~l--~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
..++++|++.+ +++++.+++|++|+. ++++|.+.+.+|..+ .+|+||+|
T Consensus 135 ~~~~~~l~~~~~~G~~i~~~~~V~~i~~--~~~~~~v~t~~g~~~-~a~~vV~a 185 (381)
T TIGR03197 135 PQLCRALLAHAGIRLTLHFNTEITSLER--DGEGWQLLDANGEVI-AASVVVLA 185 (381)
T ss_pred HHHHHHHHhccCCCcEEEeCCEEEEEEE--cCCeEEEEeCCCCEE-EcCEEEEc
Confidence 44566665543 578999999999987 677899988887533 68999999
No 42
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=92.64 E-value=0.23 Score=45.02 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=34.9
Q ss_pred HHHHHHH---hcCCCCe--eecCeeEEeEEeecCCCCEEEEeCCCC-c--ccccCEEEec
Q 028756 79 NSICKAL---CHQPGVE--SKFGVGVGRFEWLEDKNLWSVSGLDGQ-S--LGQFNGVVAS 130 (204)
Q Consensus 79 ~sl~~~L---a~~l~~~--i~~~~~V~~l~~~~~~~~w~l~~~~G~-~--~~~~d~VVla 130 (204)
..+.++| ++..+++ |+++++|++|++ .+++|.|+..++. . ...||+||+|
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~--~~~~w~V~~~~~~~~~~~~~~d~VIvA 168 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEP--VDGKWRVQSKNSGGFSKDEIFDAVVVC 168 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEee--cCCeEEEEEEcCCCceEEEEcCEEEEe
Confidence 4454444 4434444 899999999997 6788999876432 1 2369999999
No 43
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=92.16 E-value=0.27 Score=43.84 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=36.3
Q ss_pred cCcHHHHHHHhcC---CCCeeecCeeEEeEEeecCCCC-EEEEeCCCCcccccCEEEecCCCCCCcc
Q 028756 76 PGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVSPR 138 (204)
Q Consensus 76 ~Gm~sl~~~La~~---l~~~i~~~~~V~~l~~~~~~~~-w~l~~~~G~~~~~~d~VVla~~~~pa~~ 138 (204)
.--.++++.|.+. ++++++++++|.+|+. .+++ |.|.+++++.+ .+|.||||.=+...|+
T Consensus 106 ~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~--~~~~~f~v~~~~~~~~-~a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 106 DKASSVVDALLEELKRLGVEIHFNTRVKSIEK--KEDGVFGVKTKNGGEY-EADAVILATGGKSYPK 169 (409)
T ss_dssp --HHHHHHHHHHHHHHHT-EEE-S--EEEEEE--ETTEEEEEEETTTEEE-EESEEEE----SSSGG
T ss_pred CcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee--cCCceeEeeccCcccc-cCCEEEEecCCCCccc
Confidence 3456677777554 4689999999999987 5555 99988554444 7999999954445544
No 44
>PRK07236 hypothetical protein; Provisional
Probab=91.81 E-value=0.51 Score=41.24 Aligned_cols=52 Identities=21% Similarity=0.169 Sum_probs=42.7
Q ss_pred CcHHHHHHHhcCCC-CeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 77 GMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 77 Gm~sl~~~La~~l~-~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
+...+.+.|.+.++ .+++++++|++++. .++++.+...+|+.+ .+|.||.||
T Consensus 98 ~~~~l~~~L~~~~~~~~i~~~~~v~~i~~--~~~~v~v~~~~g~~~-~ad~vIgAD 150 (386)
T PRK07236 98 SWNVLYRALRAAFPAERYHLGETLVGFEQ--DGDRVTARFADGRRE-TADLLVGAD 150 (386)
T ss_pred CHHHHHHHHHHhCCCcEEEcCCEEEEEEe--cCCeEEEEECCCCEE-EeCEEEECC
Confidence 45677788887665 67999999999987 778899998888654 799999994
No 45
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=89.91 E-value=1 Score=39.15 Aligned_cols=48 Identities=25% Similarity=0.198 Sum_probs=36.4
Q ss_pred HHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
|.+.+.+..+++++++++|++++. .+++|.+++.+|.. ..+|.||.|+
T Consensus 118 l~~~~~~~~g~~~~~~~~v~~i~~--~~~~~~v~~~~g~~-~~a~~vI~Ad 165 (395)
T PRK05732 118 LFALLDKAPGVTLHCPARVANVER--TQGSVRVTLDDGET-LTGRLLVAAD 165 (395)
T ss_pred HHHHHhcCCCcEEEcCCEEEEEEE--cCCeEEEEECCCCE-EEeCEEEEec
Confidence 344444434578999999999987 77889998877754 3799999993
No 46
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=89.48 E-value=1.3 Score=38.87 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=36.6
Q ss_pred HHHHHHHhcC---CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 79 NSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 79 ~sl~~~La~~---l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
..++++|.+. .+++++++++|.+++. .+++|.+.+.+|. ..+|.||+|
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~--~~~~~~V~~~~g~--i~ad~vV~A 199 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDE--HANGVVVRTTQGE--YEARTLINC 199 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEe--cCCeEEEEECCCE--EEeCEEEEC
Confidence 4556655533 4688999999999987 6778988877763 379999999
No 47
>PRK09126 hypothetical protein; Provisional
Probab=89.47 E-value=1.1 Score=38.98 Aligned_cols=48 Identities=27% Similarity=0.270 Sum_probs=36.8
Q ss_pred HHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
|.+.+.+..+++|+++++|++++. .+++|.+...+|+.+ .+|.||.||
T Consensus 116 l~~~~~~~~g~~i~~~~~v~~~~~--~~~~~~v~~~~g~~~-~a~~vI~Ad 163 (392)
T PRK09126 116 AYEAVSQQDGIELLTGTRVTAVRT--DDDGAQVTLANGRRL-TARLLVAAD 163 (392)
T ss_pred HHHHHhhCCCcEEEcCCeEEEEEE--cCCeEEEEEcCCCEE-EeCEEEEeC
Confidence 344444444688999999999987 677888888777653 799999994
No 48
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=89.44 E-value=1.1 Score=38.81 Aligned_cols=49 Identities=12% Similarity=0.086 Sum_probs=37.7
Q ss_pred HHHHHHHhcC----CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 79 NSICKALCHQ----PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 79 ~sl~~~La~~----l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
..|.+.|.+. .+++++++++|++++. .+++|.+...+|+. ..+|.||.|
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~--~~~~~~v~~~~g~~-~~ad~vV~A 157 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIR--NQDYVRVTLDNGQQ-LRAKLLIAA 157 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEE--cCCeEEEEECCCCE-EEeeEEEEe
Confidence 4556555543 2577999999999987 67789998877764 479999999
No 49
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.36 E-value=0.85 Score=43.08 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=38.2
Q ss_pred HHHHHHHhcCC--CCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 79 NSICKALCHQP--GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 79 ~sl~~~La~~l--~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
..++++|.+.+ +++++.+++|++|+. .+++|.|.+.+|.. ..+|.||+|
T Consensus 408 ~~l~~aL~~~a~~Gv~i~~~~~V~~i~~--~~~~~~v~t~~g~~-~~ad~VV~A 458 (662)
T PRK01747 408 AELCRALLALAGQQLTIHFGHEVARLER--EDDGWQLDFAGGTL-ASAPVVVLA 458 (662)
T ss_pred HHHHHHHHHhcccCcEEEeCCEeeEEEE--eCCEEEEEECCCcE-EECCEEEEC
Confidence 45677666654 488999999999987 67789998777653 368999999
No 50
>PRK06753 hypothetical protein; Provisional
Probab=88.70 E-value=1.4 Score=38.00 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=39.5
Q ss_pred HHHHHHHhcCCC-CeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 79 NSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 79 ~sl~~~La~~l~-~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
..|-+.|.+.+. .+|+++++|++++. +++++.+++++|+.. .+|.||-||
T Consensus 98 ~~l~~~L~~~~~~~~i~~~~~v~~i~~--~~~~v~v~~~~g~~~-~~~~vigad 148 (373)
T PRK06753 98 QTLIDIIKSYVKEDAIFTGKEVTKIEN--ETDKVTIHFADGESE-AFDLCIGAD 148 (373)
T ss_pred HHHHHHHHHhCCCceEEECCEEEEEEe--cCCcEEEEECCCCEE-ecCEEEECC
Confidence 456667766553 56999999999987 778899988888654 789999994
No 51
>PRK07588 hypothetical protein; Provisional
Probab=88.33 E-value=1.2 Score=38.88 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=37.1
Q ss_pred HHHHHHhcCC--CCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 80 SICKALCHQP--GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 80 sl~~~La~~l--~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
.|.+.|.+.+ +++++++++|++++. .+++|.+.+++|+.. .+|.||-||
T Consensus 104 ~l~~~L~~~~~~~v~i~~~~~v~~i~~--~~~~v~v~~~~g~~~-~~d~vIgAD 154 (391)
T PRK07588 104 DLAAAIYTAIDGQVETIFDDSIATIDE--HRDGVRVTFERGTPR-DFDLVIGAD 154 (391)
T ss_pred HHHHHHHHhhhcCeEEEeCCEEeEEEE--CCCeEEEEECCCCEE-EeCEEEECC
Confidence 3444444332 478999999999987 778899998888653 789999984
No 52
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=88.32 E-value=1.4 Score=38.55 Aligned_cols=47 Identities=19% Similarity=0.264 Sum_probs=36.3
Q ss_pred HHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
|.+++.+ .+++++.+++|.+++. .+++|.+...+|+.+ .+|.||.||
T Consensus 118 L~~~~~~-~gv~v~~~~~v~~i~~--~~~~v~v~~~~g~~~-~a~~vVgAd 164 (405)
T PRK05714 118 LLERLHD-SDIGLLANARLEQMRR--SGDDWLLTLADGRQL-RAPLVVAAD 164 (405)
T ss_pred HHHHHhc-CCCEEEcCCEEEEEEE--cCCeEEEEECCCCEE-EeCEEEEec
Confidence 3344433 3688999999999987 778899988887654 799999994
No 53
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=88.13 E-value=1.1 Score=40.52 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=33.6
Q ss_pred HHHHHhcCCCCeeecCeeEEeEEeecCCCC-EEEEeC---CCC-cccccCEEEec
Q 028756 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNL-WSVSGL---DGQ-SLGQFNGVVAS 130 (204)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~l~~~~~~~~-w~l~~~---~G~-~~~~~d~VVla 130 (204)
|+++|.+.-+.+++++++|+.|++ .+++ |.|... .|+ ....++.|++-
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r--~~dg~W~v~~~~~~~~~~~~v~a~FVfvG 239 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKR--NGDGRWEVKVKDLKTGEKREVRAKFVFVG 239 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEE--CCCCCEEEEEEecCCCCeEEEECCEEEEC
Confidence 444555444688999999999998 5444 999763 232 22378999997
No 54
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=87.94 E-value=1.4 Score=38.38 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=36.4
Q ss_pred HHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 82 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 82 ~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
.+++.+..+++++.+++|++++. +++++.++..+|..+ .+|.||.||
T Consensus 117 ~~~~~~~~~i~i~~~~~v~~~~~--~~~~~~v~~~~g~~~-~~~lvIgAD 163 (384)
T PRK08849 117 WQQFAQYPNLTLMCPEKLADLEF--SAEGNRVTLESGAEI-EAKWVIGAD 163 (384)
T ss_pred HHHHHhCCCeEEECCCceeEEEE--cCCeEEEEECCCCEE-EeeEEEEec
Confidence 34444433578999999999987 778899988888654 789999994
No 55
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=87.72 E-value=3.1 Score=35.00 Aligned_cols=48 Identities=25% Similarity=0.207 Sum_probs=34.8
Q ss_pred HHHHHHHhcC---CCCeeecCeeEEeEEeecCCCCEE-EEeCCCCcccccCEEEec
Q 028756 79 NSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWS-VSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 79 ~sl~~~La~~---l~~~i~~~~~V~~l~~~~~~~~w~-l~~~~G~~~~~~d~VVla 130 (204)
..+++.|++. .+++++.+++|++|+. .+++|. |.+.+| .+ .+|.||+|
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~--~~~~~~~v~~~~g-~~-~a~~vV~a 188 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEI--RGEKVTAIVTPSG-DV-QADQVVLA 188 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEe--eCCEEEEEEcCCC-EE-ECCEEEEc
Confidence 4455555543 4688999999999987 666664 666666 33 79999999
No 56
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=87.37 E-value=1.8 Score=37.61 Aligned_cols=48 Identities=23% Similarity=0.419 Sum_probs=36.0
Q ss_pred HHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
|.+.+.+..+++++.+++|++++. .+++|.+...+|+.+ .+|.||.||
T Consensus 118 L~~~~~~~~gv~i~~~~~v~~i~~--~~~~~~v~~~~g~~~-~a~~vI~Ad 165 (391)
T PRK08020 118 LWQALEAHPNVTLRCPASLQALQR--DDDGWELTLADGEEI-QAKLVIGAD 165 (391)
T ss_pred HHHHHHcCCCcEEEcCCeeEEEEE--cCCeEEEEECCCCEE-EeCEEEEeC
Confidence 344443333678999999999987 677899988777644 799999993
No 57
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=86.85 E-value=2.1 Score=37.80 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=39.6
Q ss_pred cHHHHHHHhcC---CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCcch
Q 028756 78 MNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRF 139 (204)
Q Consensus 78 m~sl~~~La~~---l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~ 139 (204)
-+++++.|... ++++|+++++|++|+ + ++|.+...++.....+|+||+|.=+.+.|++
T Consensus 85 A~sVv~~L~~~l~~~gV~i~~~~~V~~i~---~-~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 85 AAPLLRAWLKRLAEQGVQFHTRHRWIGWQ---G-GTLRFETPDGQSTIEADAVVLALGGASWSQL 145 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEe---C-CcEEEEECCCceEEecCEEEEcCCCcccccc
Confidence 35566655543 579999999999994 3 3688876543222379999999655565543
No 58
>PRK06847 hypothetical protein; Provisional
Probab=86.84 E-value=1.7 Score=37.45 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=33.3
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
.+++++++++|++++. .++++.+...+|+.. .+|.||.|+
T Consensus 120 ~gv~v~~~~~v~~i~~--~~~~~~v~~~~g~~~-~ad~vI~Ad 159 (375)
T PRK06847 120 AGADVRLGTTVTAIEQ--DDDGVTVTFSDGTTG-RYDLVVGAD 159 (375)
T ss_pred hCCEEEeCCEEEEEEE--cCCEEEEEEcCCCEE-EcCEEEECc
Confidence 3678999999999987 677898888888653 799999993
No 59
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=86.53 E-value=2.1 Score=36.92 Aligned_cols=49 Identities=16% Similarity=0.036 Sum_probs=37.0
Q ss_pred HHHHHHHhcC---CC-CeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 79 NSICKALCHQ---PG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 79 ~sl~~~La~~---l~-~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
..+.+.|.+. .+ ++++.+++|+++.. .+++|.+..++|+. ..+|.||.|
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~--~~~~~~v~~~~g~~-~~~~~vi~a 158 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPR--HSDHVELTLDDGQQ-LRARLLVGA 158 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEe--cCCeeEEEECCCCE-EEeeEEEEe
Confidence 4455544443 34 78999999999987 67789898888865 478999998
No 60
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=86.28 E-value=2.2 Score=37.14 Aligned_cols=49 Identities=27% Similarity=0.286 Sum_probs=37.2
Q ss_pred HHHHHHhcC---CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 80 SICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 80 sl~~~La~~---l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
.+.+.|.+. .+++++++++|++++. .+++|.+...+|..+ .+|.||.|+
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~--~~~~v~v~~~~g~~~-~ad~vI~Ad 163 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFET--RDEGVTVTLSDGSVL-EARLLVAAD 163 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEE--cCCEEEEEECCCCEE-EeCEEEEcC
Confidence 444444433 3688999999999987 778899988777653 789999994
No 61
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=86.23 E-value=2.2 Score=37.49 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=36.4
Q ss_pred HHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
|.+++.+..+++++++++|++++. +++++.+...+|+.+ .+|.||.||
T Consensus 117 L~~~~~~~~~v~v~~~~~v~~i~~--~~~~~~v~~~~g~~~-~a~lvIgAD 164 (405)
T PRK08850 117 LLEQVQKQDNVTLLMPARCQSIAV--GESEAWLTLDNGQAL-TAKLVVGAD 164 (405)
T ss_pred HHHHHhcCCCeEEEcCCeeEEEEe--eCCeEEEEECCCCEE-EeCEEEEeC
Confidence 344444433578999999999987 677888888888654 789999994
No 62
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=85.77 E-value=1.9 Score=37.12 Aligned_cols=38 Identities=29% Similarity=0.298 Sum_probs=32.2
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
.+++++.+++|++++. .+++|.+.+++|. + .+|.||+|
T Consensus 162 ~gv~i~~~~~v~~i~~--~~~~~~v~~~~g~-~-~a~~vV~A 199 (376)
T PRK11259 162 AGAELLFNEPVTAIEA--DGDGVTVTTADGT-Y-EAKKLVVS 199 (376)
T ss_pred CCCEEECCCEEEEEEe--eCCeEEEEeCCCE-E-EeeEEEEe
Confidence 4688999999999997 6778999887773 3 78999999
No 63
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=85.62 E-value=2.5 Score=36.84 Aligned_cols=40 Identities=25% Similarity=0.227 Sum_probs=33.2
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
.+++++++++|++++. ++++|.++.++|+.+ .+|.||.|+
T Consensus 126 ~gv~i~~~~~v~~i~~--~~~~v~v~~~~g~~~-~a~~vV~Ad 165 (392)
T PRK08773 126 AGVQLHCPARVVALEQ--DADRVRLRLDDGRRL-EAALAIAAD 165 (392)
T ss_pred CCCEEEcCCeEEEEEe--cCCeEEEEECCCCEE-EeCEEEEec
Confidence 4688999999999987 777899888777643 789999993
No 64
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=85.57 E-value=2 Score=39.37 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=30.2
Q ss_pred CeeecCeeEEeEEeecC-CCCEEEEeCCCCcccccCEEEec
Q 028756 91 VESKFGVGVGRFEWLED-KNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 91 ~~i~~~~~V~~l~~~~~-~~~w~l~~~~G~~~~~~d~VVla 130 (204)
++|+++++|+.|++ . ++.|.|.+.+|. ..+|.||+|
T Consensus 232 v~i~~~t~V~~I~~--~~~~~~~V~T~~G~--i~A~~VVva 268 (497)
T PTZ00383 232 ISINLNTEVLNIER--SNDSLYKIHTNRGE--IRARFVVVS 268 (497)
T ss_pred EEEEeCCEEEEEEe--cCCCeEEEEECCCE--EEeCEEEEC
Confidence 67899999999997 5 567999888774 379999999
No 65
>PRK09897 hypothetical protein; Provisional
Probab=85.52 E-value=2 Score=39.78 Aligned_cols=39 Identities=10% Similarity=-0.031 Sum_probs=30.6
Q ss_pred CeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 91 VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 91 ~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
++++.+++|+.|+. .+++|.|.+.+|.....+|.||+|.
T Consensus 124 V~v~~~~~V~~I~~--~~~g~~V~t~~gg~~i~aD~VVLAt 162 (534)
T PRK09897 124 VAVYESCQVTDLQI--TNAGVMLATNQDLPSETFDLAVIAT 162 (534)
T ss_pred EEEEECCEEEEEEE--eCCEEEEEECCCCeEEEcCEEEECC
Confidence 56788999999987 7788999876543223799999993
No 66
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=85.18 E-value=2.2 Score=35.26 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=31.3
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
.++++++ ++|+++++ .+++|.+...+|..+ .+|.||+|
T Consensus 70 ~gv~~~~-~~v~~v~~--~~~~~~v~~~~~~~~-~~d~liiA 107 (300)
T TIGR01292 70 FGAEIIY-EEVIKVDL--SDRPFKVKTGDGKEY-TAKAVIIA 107 (300)
T ss_pred cCCeEEE-EEEEEEEe--cCCeeEEEeCCCCEE-EeCEEEEC
Confidence 4677888 89999987 777899988776554 79999999
No 67
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=84.87 E-value=1.7 Score=29.06 Aligned_cols=39 Identities=26% Similarity=0.212 Sum_probs=27.5
Q ss_pred cHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCC
Q 028756 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG 118 (204)
Q Consensus 78 m~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G 118 (204)
+....+...+..++++++++.|.++.. ++++++|..++|
T Consensus 42 ~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~~~V~~~~g 80 (80)
T PF00070_consen 42 AAKILEEYLRKRGVEVHTNTKVKEIEK--DGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHHHHHTTEEEEESEEEEEEEE--ETTSEEEEEETS
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEE--eCCEEEEEEecC
Confidence 344444444445899999999999997 666677776665
No 68
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=84.87 E-value=2.5 Score=36.74 Aligned_cols=48 Identities=21% Similarity=0.300 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 80 sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
.|.+++.+.-++ .+++++|++++. .+++|.++.++|+.+ .+|.||.||
T Consensus 116 ~L~~~~~~~~~~-~~~~~~v~~i~~--~~~~~~v~~~~g~~~-~a~~vI~Ad 163 (388)
T PRK07494 116 ALEARVAELPNI-TRFGDEAESVRP--REDEVTVTLADGTTL-SARLVVGAD 163 (388)
T ss_pred HHHHHHhcCCCc-EEECCeeEEEEE--cCCeEEEEECCCCEE-EEeEEEEec
Confidence 344444432224 488999999987 778899988877643 789999994
No 69
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=84.74 E-value=3 Score=36.30 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=37.6
Q ss_pred hcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCcch
Q 028756 86 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRF 139 (204)
Q Consensus 86 a~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~ 139 (204)
.+..+++++++++|.+++. .+++|.+...+|+.+ .+|.||+|.-..|....
T Consensus 193 l~~~gV~i~~~~~v~~i~~--~~~~~~v~~~~g~~i-~~D~vI~a~G~~p~~~l 243 (377)
T PRK04965 193 LTEMGVHLLLKSQLQGLEK--TDSGIRATLDSGRSI-EVDAVIAAAGLRPNTAL 243 (377)
T ss_pred HHhCCCEEEECCeEEEEEc--cCCEEEEEEcCCcEE-ECCEEEECcCCCcchHH
Confidence 3345788999999999986 666788888787654 79999999433344333
No 70
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=84.54 E-value=2.3 Score=38.22 Aligned_cols=39 Identities=26% Similarity=0.142 Sum_probs=31.2
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCC
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDK 132 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~ 132 (204)
.+++|+.+++|++|+. ++.|.|.+.+|. + .+|+||+|.+
T Consensus 196 ~Gv~i~~~t~V~~i~~---~~~~~v~t~~g~-v-~A~~VV~Atg 234 (460)
T TIGR03329 196 LGVEIHENTPMTGLEE---GQPAVVRTPDGQ-V-TADKVVLALN 234 (460)
T ss_pred cCCEEECCCeEEEEee---CCceEEEeCCcE-E-ECCEEEEccc
Confidence 5789999999999974 456888887774 3 7999999943
No 71
>PRK08013 oxidoreductase; Provisional
Probab=84.53 E-value=3 Score=36.59 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=36.0
Q ss_pred HHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
|.+.+.+.-+++++++++|++++. .++++.++..+|+.+ .+|.||-||
T Consensus 117 L~~~~~~~~~v~i~~~~~v~~i~~--~~~~v~v~~~~g~~i-~a~lvVgAD 164 (400)
T PRK08013 117 LWQKAQQSSDITLLAPAELQQVAW--GENEAFLTLKDGSML-TARLVVGAD 164 (400)
T ss_pred HHHHHhcCCCcEEEcCCeeEEEEe--cCCeEEEEEcCCCEE-EeeEEEEeC
Confidence 334443322578999999999987 677888888888654 789999994
No 72
>PRK08163 salicylate hydroxylase; Provisional
Probab=84.22 E-value=3.1 Score=36.17 Aligned_cols=39 Identities=21% Similarity=0.128 Sum_probs=32.2
Q ss_pred CCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 90 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 90 ~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
+++++++++|++++. .++++.+...+|+.. .+|.||.|+
T Consensus 124 ~v~~~~~~~v~~i~~--~~~~v~v~~~~g~~~-~ad~vV~Ad 162 (396)
T PRK08163 124 LVEFRTSTHVVGIEQ--DGDGVTVFDQQGNRW-TGDALIGCD 162 (396)
T ss_pred CcEEEeCCEEEEEec--CCCceEEEEcCCCEE-ecCEEEECC
Confidence 378999999999986 677899888777643 789999994
No 73
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=83.69 E-value=0.96 Score=29.64 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=19.5
Q ss_pred eecccCCCeeec--CChHHHHHHHHH
Q 028756 14 MLFDHGAPFFTV--TNNDVLALVREW 37 (204)
Q Consensus 14 ~~fDhGaqyft~--~~~~f~~~v~~l 37 (204)
..+|+|+.+|+. .++.+.+++++|
T Consensus 43 ~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 43 YRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred EEEeeccEEEeCCCCchHHHHHHcCC
Confidence 689999999998 468898888864
No 74
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=83.67 E-value=2.7 Score=36.26 Aligned_cols=39 Identities=26% Similarity=0.237 Sum_probs=31.7
Q ss_pred CCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 88 ~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
..+++++.+++|++|+. ++++|.|.+.+|. + .+|.||+|
T Consensus 157 ~~g~~~~~~~~V~~i~~--~~~~~~v~~~~~~-i-~a~~vV~a 195 (380)
T TIGR01377 157 AHGATVRDGTKVVEIEP--TELLVTVKTTKGS-Y-QANKLVVT 195 (380)
T ss_pred HcCCEEECCCeEEEEEe--cCCeEEEEeCCCE-E-EeCEEEEe
Confidence 35788999999999987 6778888776663 3 68999998
No 75
>PRK06834 hypothetical protein; Provisional
Probab=83.14 E-value=3.6 Score=37.50 Aligned_cols=40 Identities=28% Similarity=0.186 Sum_probs=33.4
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
.+++++++++|++++. +++++.++..+|+. ..+|.||.|+
T Consensus 113 ~gv~i~~~~~v~~v~~--~~~~v~v~~~~g~~-i~a~~vVgAD 152 (488)
T PRK06834 113 LGVPIYRGREVTGFAQ--DDTGVDVELSDGRT-LRAQYLVGCD 152 (488)
T ss_pred CCCEEEcCCEEEEEEE--cCCeEEEEECCCCE-EEeCEEEEec
Confidence 4688999999999987 77889888777754 3799999995
No 76
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=82.00 E-value=4.1 Score=35.65 Aligned_cols=50 Identities=22% Similarity=0.082 Sum_probs=34.8
Q ss_pred HHHHHHhcC---C-CCeeecCeeEEeEEeecCCCCEEEEeCC-CC-cccccCEEEecC
Q 028756 80 SICKALCHQ---P-GVESKFGVGVGRFEWLEDKNLWSVSGLD-GQ-SLGQFNGVVASD 131 (204)
Q Consensus 80 sl~~~La~~---l-~~~i~~~~~V~~l~~~~~~~~w~l~~~~-G~-~~~~~d~VVla~ 131 (204)
.+.+.|.+. . +++++++++|++++. +++++.++..+ ++ ....+|.||.||
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~--~~~~~~v~~~~~~~~~~i~adlvIgAD 177 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEY--QQDAATVTLEIEGKQQTLQSKLVVAAD 177 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEe--cCCeeEEEEccCCcceEEeeeEEEEeC
Confidence 455555332 2 478899999999987 67788887653 22 223799999994
No 77
>PRK07045 putative monooxygenase; Reviewed
Probab=81.95 E-value=4.9 Score=34.97 Aligned_cols=40 Identities=30% Similarity=0.355 Sum_probs=30.8
Q ss_pred CCCeeecCeeEEeEEeecCCCC--EEEEeCCCCcccccCEEEecC
Q 028756 89 PGVESKFGVGVGRFEWLEDKNL--WSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~--w~l~~~~G~~~~~~d~VVla~ 131 (204)
.+++++++++|+.++. .+++ +.|+..+|+. ..+|.||.||
T Consensus 120 ~gv~i~~~~~v~~i~~--~~~~~~~~v~~~~g~~-~~~~~vIgAD 161 (388)
T PRK07045 120 PNVRLRFETSIERIER--DADGTVTSVTLSDGER-VAPTVLVGAD 161 (388)
T ss_pred CCeeEEeCCEEEEEEE--CCCCcEEEEEeCCCCE-EECCEEEECC
Confidence 3578999999999987 4444 5677777764 4789999983
No 78
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=81.94 E-value=5.1 Score=36.53 Aligned_cols=50 Identities=20% Similarity=0.265 Sum_probs=33.9
Q ss_pred HHHHHHHhcC---CCCeeecCeeEEeEEeecCC-CCEEEEe---CCCC-cccccCEEEec
Q 028756 79 NSICKALCHQ---PGVESKFGVGVGRFEWLEDK-NLWSVSG---LDGQ-SLGQFNGVVAS 130 (204)
Q Consensus 79 ~sl~~~La~~---l~~~i~~~~~V~~l~~~~~~-~~w~l~~---~~G~-~~~~~d~VVla 130 (204)
..++++|++. .+++++++++|++|++ .+ ++|.+.. .+|+ ....+|.||+|
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~--~~~~~v~v~~~~~~~g~~~~i~A~~VV~A 235 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKR--QSDGSWTVTVKNTRTGGKRTLNTRFVFVG 235 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--cCCCeEEEEEeeccCCceEEEECCEEEEC
Confidence 3455555443 3689999999999986 44 4698753 2332 12379999998
No 79
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=81.30 E-value=4 Score=37.32 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=37.3
Q ss_pred HHHHHHhcC---CC-CeeecCeeEEeEEeecCCC-CEEEEeC---CCCc-ccccCEEEecCCCCCCcchhcccC
Q 028756 80 SICKALCHQ---PG-VESKFGVGVGRFEWLEDKN-LWSVSGL---DGQS-LGQFNGVVASDKNVVSPRFRDVTG 144 (204)
Q Consensus 80 sl~~~La~~---l~-~~i~~~~~V~~l~~~~~~~-~w~l~~~---~G~~-~~~~d~VVla~~~~pa~~~~~ll~ 144 (204)
.++++|++. .+ ++++++++|++|++ .++ .|.+... +|+. ...++.||++ .+.-+...++.++
T Consensus 184 ~l~~aL~~~a~~~Ggv~i~~~teV~~I~~--~~dg~~~v~~~~~~~G~~~~i~A~~VVva-AGg~s~~L~~~~G 254 (494)
T PRK05257 184 ALTRQLVGYLQKQGNFELQLGHEVRDIKR--NDDGSWTVTVKDLKTGEKRTVRAKFVFIG-AGGGALPLLQKSG 254 (494)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCEEEEEEE--CCCCCEEEEEEEcCCCceEEEEcCEEEEC-CCcchHHHHHHcC
Confidence 445544332 34 68999999999987 444 4987643 3531 1379999988 2222333444444
No 80
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=81.08 E-value=4.3 Score=35.61 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=29.6
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCCCC----cccccCEEEec
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ----SLGQFNGVVAS 130 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~----~~~~~d~VVla 130 (204)
.+++++.+++|++|+. .+++|.+...++. ....+|.||+|
T Consensus 210 ~G~~i~~~~~V~~i~~--~~~~~~v~~~~~~~~~~~~i~a~~vV~a 253 (410)
T PRK12409 210 LGVQFRYGQEVTSIKT--DGGGVVLTVQPSAEHPSRTLEFDGVVVC 253 (410)
T ss_pred CCCEEEcCCEEEEEEE--eCCEEEEEEEcCCCCccceEecCEEEEC
Confidence 4788999999999987 6677877543321 12378999999
No 81
>PRK05868 hypothetical protein; Validated
Probab=80.78 E-value=5.1 Score=34.94 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=37.0
Q ss_pred HHHHHHhcC--CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 80 SICKALCHQ--PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 80 sl~~~La~~--l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
.|.+.|.+. .+++++++++|++++. ++++..++.++|+. ..+|.||-||
T Consensus 106 ~L~~~l~~~~~~~v~i~~~~~v~~i~~--~~~~v~v~~~dg~~-~~adlvIgAD 156 (372)
T PRK05868 106 DLVELLYGATQPSVEYLFDDSISTLQD--DGDSVRVTFERAAA-REFDLVIGAD 156 (372)
T ss_pred HHHHHHHHhccCCcEEEeCCEEEEEEe--cCCeEEEEECCCCe-EEeCEEEECC
Confidence 344444432 2478999999999986 67789998888865 3799999994
No 82
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=80.69 E-value=5.3 Score=34.70 Aligned_cols=49 Identities=10% Similarity=-0.099 Sum_probs=36.0
Q ss_pred HHHHHHHhcC---C-CCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 79 NSICKALCHQ---P-GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 79 ~sl~~~La~~---l-~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
..|-+.|.+. . +++++++++|+++.. +++++.+...++ . ..+|.||.||
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~--~~~~v~v~~~~~-~-~~adlvIgAD 156 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVIS--HNDYSIIKFDDK-Q-IKCNLLIICD 156 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEE--cCCeEEEEEcCC-E-EeeCEEEEeC
Confidence 4455555443 2 367899999999987 777898888766 3 3789999994
No 83
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=80.57 E-value=4.8 Score=35.25 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=33.5
Q ss_pred HHHHHHhcC---CCCeeecCeeEEeEEeecCCCCEE-EEeCCCCcccccCEEEec
Q 028756 80 SICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWS-VSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 80 sl~~~La~~---l~~~i~~~~~V~~l~~~~~~~~w~-l~~~~G~~~~~~d~VVla 130 (204)
.+++.|++. .+++|+.+++|++|+. .+++|. +.+++| . ..+|.||+|
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~--~~~~~~~v~t~~~-~-~~a~~VV~a 252 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLV--EGGRITGVQTGGG-V-ITADAYVVA 252 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEe--cCCEEEEEEeCCc-E-EeCCEEEEC
Confidence 455555433 4788999999999987 566664 655555 3 368999999
No 84
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=79.89 E-value=4.4 Score=34.87 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 79 ~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
..|.+++.+..+++++.+++|++|+. . .|.+.+|. + .+|+||+|
T Consensus 149 ~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g~-i-~a~~VV~A 192 (365)
T TIGR03364 149 PALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRGD-V-HADQVFVC 192 (365)
T ss_pred HHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCCc-E-EeCEEEEC
Confidence 44555555434788999999999974 2 56666664 3 69999999
No 85
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=79.41 E-value=5.9 Score=34.29 Aligned_cols=47 Identities=21% Similarity=0.129 Sum_probs=34.5
Q ss_pred HHHHHHhcCCC-CeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 80 SICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 80 sl~~~La~~l~-~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
.|.+++.+ .+ ++++ ++.|++++. .+++|.+++.+|.. ..+|.||.|+
T Consensus 116 ~L~~~~~~-~~~v~~~-~~~v~~i~~--~~~~~~v~~~~g~~-~~a~~vI~ad 163 (388)
T PRK07608 116 ALWAALRF-QPNLTWF-PARAQGLEV--DPDAATLTLADGQV-LRADLVVGAD 163 (388)
T ss_pred HHHHHHHh-CCCcEEE-cceeEEEEe--cCCeEEEEECCCCE-EEeeEEEEeC
Confidence 34444443 34 6777 999999986 67789998887754 3799999993
No 86
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=79.18 E-value=5.3 Score=35.30 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=36.8
Q ss_pred CcHHHHHHHhcC---CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 77 GMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 77 Gm~sl~~~La~~---l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
....+.+.|.+. .+++++++++|+++.. .++.|.+..+ ++.+ .+|.||+|
T Consensus 103 ~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~--~~~~~~v~~~-~~~i-~ad~VIlA 155 (400)
T TIGR00275 103 SAADVLDALLNELKELGVEILTNSKVKSIKK--DDNGFGVETS-GGEY-EADKVILA 155 (400)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEe--cCCeEEEEEC-CcEE-EcCEEEEC
Confidence 345566655553 3688999999999986 6678888764 4343 69999999
No 87
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=79.07 E-value=5.4 Score=36.16 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=41.5
Q ss_pred eEEeCcCcHHHHHHHhcC---CCCeeecCeeEEeEEeecCCCC-EEEEeCCCCcccccCEEEec
Q 028756 71 KYVGVPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 71 ~~vg~~Gm~sl~~~La~~---l~~~i~~~~~V~~l~~~~~~~~-w~l~~~~G~~~~~~d~VVla 130 (204)
+=+|+..+--+++.|-+. ++.+++++++|..|.. .++. -.+...+|..+ .+|+||+|
T Consensus 165 rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~--~~~~~~~v~~~~g~~i-~~~~vvlA 225 (486)
T COG2509 165 RHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEI--EDNEVLGVKLTKGEEI-EADYVVLA 225 (486)
T ss_pred cccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEe--cCCceEEEEccCCcEE-ecCEEEEc
Confidence 446666676677766554 5689999999999986 4432 34566677654 79999999
No 88
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=78.67 E-value=7.4 Score=34.03 Aligned_cols=51 Identities=25% Similarity=0.277 Sum_probs=38.1
Q ss_pred cHHHHHHHhcCC---C-CeeecCeeEEeEEeecCCCCEEEEeC-CCCcccccCEEEecC
Q 028756 78 MNSICKALCHQP---G-VESKFGVGVGRFEWLEDKNLWSVSGL-DGQSLGQFNGVVASD 131 (204)
Q Consensus 78 m~sl~~~La~~l---~-~~i~~~~~V~~l~~~~~~~~w~l~~~-~G~~~~~~d~VVla~ 131 (204)
...|-+.|.+.+ + ++++.++.|+.++. +++++.++.. +|+. ..+|.||-||
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~--~~~~v~v~l~~dG~~-~~a~llVgAD 158 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQ--DGDGVTVTLSFDGET-LDADLLVGAD 158 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEE--cCCceEEEEcCCCcE-EecCEEEECC
Confidence 344555544433 3 78999999999998 7788888877 8874 4799999993
No 89
>PRK06475 salicylate hydroxylase; Provisional
Probab=78.21 E-value=7.2 Score=34.19 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=32.7
Q ss_pred HHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeC--CCCcccccCEEEecC
Q 028756 82 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQSLGQFNGVVASD 131 (204)
Q Consensus 82 ~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~--~G~~~~~~d~VVla~ 131 (204)
.+++.+..+++++++++|++++. .++++.++.. ++.....+|.||-||
T Consensus 114 ~~~~~~~~~i~v~~~~~v~~~~~--~~~~v~v~~~~~~~~~~~~adlvIgAD 163 (400)
T PRK06475 114 LDACRNNPGIEIKLGAEMTSQRQ--TGNSITATIIRTNSVETVSAAYLIACD 163 (400)
T ss_pred HHHHHhcCCcEEEECCEEEEEec--CCCceEEEEEeCCCCcEEecCEEEECC
Confidence 33333333577999999999986 6778887653 332223689999984
No 90
>PRK06116 glutathione reductase; Validated
Probab=78.20 E-value=6.1 Score=35.28 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=31.0
Q ss_pred CCCeeecCeeEEeEEeecCCCC-EEEEeCCCCcccccCEEEec
Q 028756 89 PGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~-w~l~~~~G~~~~~~d~VVla 130 (204)
.+++++++++|.+++. .+++ +.+...+|+.+ .+|.||++
T Consensus 221 ~GV~i~~~~~V~~i~~--~~~g~~~v~~~~g~~i-~~D~Vv~a 260 (450)
T PRK06116 221 KGIRLHTNAVPKAVEK--NADGSLTLTLEDGETL-TVDCLIWA 260 (450)
T ss_pred CCcEEECCCEEEEEEE--cCCceEEEEEcCCcEE-EeCEEEEe
Confidence 4688999999999986 4444 77777777654 79999999
No 91
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=77.67 E-value=6.2 Score=36.10 Aligned_cols=39 Identities=18% Similarity=0.094 Sum_probs=32.7
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
.+++++++++|.+|.+ .++.|.+...+|..+ .+|.||+|
T Consensus 279 ~gv~i~~~~~V~~I~~--~~~~~~V~~~~g~~i-~a~~vViA 317 (517)
T PRK15317 279 YDVDIMNLQRASKLEP--AAGLIEVELANGAVL-KAKTVILA 317 (517)
T ss_pred CCCEEEcCCEEEEEEe--cCCeEEEEECCCCEE-EcCEEEEC
Confidence 4688999999999987 667899988777544 79999999
No 92
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=77.58 E-value=4.8 Score=36.08 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=33.2
Q ss_pred HHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCC---CcccccCEEEecC
Q 028756 82 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG---QSLGQFNGVVASD 131 (204)
Q Consensus 82 ~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G---~~~~~~d~VVla~ 131 (204)
.+...+..+++++++++|++++. .++++.+...+| +. ..+|.||+|.
T Consensus 219 l~~~l~~~gV~i~~~~~V~~i~~--~~~~v~v~~~~gg~~~~-i~~D~vi~a~ 268 (462)
T PRK06416 219 AERALKKRGIKIKTGAKAKKVEQ--TDDGVTVTLEDGGKEET-LEADYVLVAV 268 (462)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEE--eCCEEEEEEEeCCeeEE-EEeCEEEEee
Confidence 33333345788999999999986 556777765544 33 3799999993
No 93
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=77.57 E-value=6 Score=36.32 Aligned_cols=49 Identities=29% Similarity=0.307 Sum_probs=35.3
Q ss_pred HHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeC--CCC-cccccCEEEecC
Q 028756 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQ-SLGQFNGVVASD 131 (204)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~--~G~-~~~~~d~VVla~ 131 (204)
|-+.+.+..+++|+++++|++++. +++++.++.. +|+ ....+|.||-||
T Consensus 119 L~~~~~~~~gv~v~~g~~v~~i~~--~~~~v~v~~~~~~G~~~~i~ad~vVgAD 170 (538)
T PRK06183 119 LRAGLARFPHVRVRFGHEVTALTQ--DDDGVTVTLTDADGQRETVRARYVVGCD 170 (538)
T ss_pred HHHHHHhCCCcEEEcCCEEEEEEE--cCCeEEEEEEcCCCCEEEEEEEEEEecC
Confidence 334444433688999999999997 7788888765 453 234789999994
No 94
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=77.26 E-value=6.2 Score=35.59 Aligned_cols=46 Identities=11% Similarity=0.044 Sum_probs=33.8
Q ss_pred HHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
+...+..+++++++++|.+++. .+++..+...+|+.+ .+|.||++.
T Consensus 225 ~~~L~~~gV~i~~~~~v~~v~~--~~~~~~v~~~~g~~l-~~D~vl~a~ 270 (466)
T PRK07845 225 EEVFARRGMTVLKRSRAESVER--TGDGVVVTLTDGRTV-EGSHALMAV 270 (466)
T ss_pred HHHHHHCCcEEEcCCEEEEEEE--eCCEEEEEECCCcEE-EecEEEEee
Confidence 3333345788999999999986 556777776677654 799999983
No 95
>PLN02507 glutathione reductase
Probab=77.04 E-value=6.3 Score=35.99 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=32.5
Q ss_pred cCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 87 ~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
+..+++++++++|.+++. .+++..+...+|+.+ .+|.||++
T Consensus 255 ~~~GI~i~~~~~V~~i~~--~~~~~~v~~~~g~~i-~~D~vl~a 295 (499)
T PLN02507 255 EGRGINLHPRTNLTQLTK--TEGGIKVITDHGEEF-VADVVLFA 295 (499)
T ss_pred HhCCCEEEeCCEEEEEEE--eCCeEEEEECCCcEE-EcCEEEEe
Confidence 345789999999999986 556777777677554 79999999
No 96
>PRK07190 hypothetical protein; Provisional
Probab=76.77 E-value=6.7 Score=35.74 Aligned_cols=40 Identities=20% Similarity=0.142 Sum_probs=32.8
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
++++++++++|++++. +++++.+...+|+. ..++.||.||
T Consensus 122 ~Gv~v~~~~~v~~l~~--~~~~v~v~~~~g~~-v~a~~vVgAD 161 (487)
T PRK07190 122 AGAAVKRNTSVVNIEL--NQAGCLTTLSNGER-IQSRYVIGAD 161 (487)
T ss_pred CCCEEEeCCEEEEEEE--cCCeeEEEECCCcE-EEeCEEEECC
Confidence 5789999999999987 77788877767754 3789999994
No 97
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=76.59 E-value=7.3 Score=37.12 Aligned_cols=50 Identities=20% Similarity=0.126 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCCC-eeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 79 NSICKALCHQPGV-ESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 79 ~sl~~~La~~l~~-~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
..|.+.|++.++. .++++++|++++. .++++++...+|+.+ .+|.||.||
T Consensus 194 ~~L~~~L~~alg~~~i~~g~~V~~I~~--~~d~VtV~~~dG~ti-~aDlVVGAD 244 (668)
T PLN02927 194 MTLQQILARAVGEDVIRNESNVVDFED--SGDKVTVVLENGQRY-EGDLLVGAD 244 (668)
T ss_pred HHHHHHHHhhCCCCEEEcCCEEEEEEE--eCCEEEEEECCCCEE-EcCEEEECC
Confidence 4678888887763 4789999999987 778899988888654 789999994
No 98
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=75.96 E-value=5.9 Score=35.57 Aligned_cols=62 Identities=15% Similarity=0.050 Sum_probs=39.5
Q ss_pred CCCCceEEeCcCcHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEE-EEeCCC-CcccccCEEEec
Q 028756 66 DGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWS-VSGLDG-QSLGQFNGVVAS 130 (204)
Q Consensus 66 ~~~~~~~vg~~Gm~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~-l~~~~G-~~~~~~d~VVla 130 (204)
++.+++.-|.-=+.+|.+++.+ +++++..+++|.++.. .++++. +.+.++ +....+|+||||
T Consensus 254 ptlPPSv~G~RL~~aL~~~~~~-~Gg~il~g~~V~~i~~--~~~~v~~V~t~~g~~~~l~AD~vVLA 317 (419)
T TIGR03378 254 PTMPPSLLGIRLEEALKHRFEQ-LGGVMLPGDRVLRAEF--EGNRVTRIHTRNHRDIPLRADHFVLA 317 (419)
T ss_pred CCCCCCCcHHHHHHHHHHHHHH-CCCEEEECcEEEEEEe--eCCeEEEEEecCCccceEECCEEEEc
Confidence 3344444333333555555554 5788999999999987 666665 444554 112379999999
No 99
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=75.81 E-value=7.8 Score=35.48 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=32.7
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
.+++++++++|.++.. .++.|.+...+|+.+ .+|.||+|.
T Consensus 280 ~gv~i~~~~~V~~I~~--~~~~~~v~~~~g~~i-~~d~lIlAt 319 (515)
T TIGR03140 280 YPIDLMENQRAKKIET--EDGLIVVTLESGEVL-KAKSVIVAT 319 (515)
T ss_pred hCCeEEcCCEEEEEEe--cCCeEEEEECCCCEE-EeCEEEECC
Confidence 4688999999999987 667788888777644 799999993
No 100
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=75.65 E-value=8.7 Score=31.43 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=30.7
Q ss_pred cCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 87 ~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
+..+++++++++|+.++. .++++.+...++.....+|.||.|
T Consensus 102 ~~~gv~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~a~~vv~a 143 (295)
T TIGR02032 102 QEAGAELRLGTTVLDVEI--HDDRVVVIVRGGEGTVTAKIVIGA 143 (295)
T ss_pred HHcCCEEEeCcEEeeEEE--eCCEEEEEEcCccEEEEeCEEEEC
Confidence 345788999999999987 666766655443222378999999
No 101
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.00 E-value=4.5 Score=36.66 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=38.7
Q ss_pred EeCcCcHHHHHHHhcCCC--CeeecCeeEEeEEeecCC-CCEEEEeCCCC---cccccCEEEec
Q 028756 73 VGVPGMNSICKALCHQPG--VESKFGVGVGRFEWLEDK-NLWSVSGLDGQ---SLGQFNGVVAS 130 (204)
Q Consensus 73 vg~~Gm~sl~~~La~~l~--~~i~~~~~V~~l~~~~~~-~~w~l~~~~G~---~~~~~d~VVla 130 (204)
-...-+-...+..|+..+ ..|++++.|..+.. .+ +.|.|...++. ....||+||+|
T Consensus 87 p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~--~~~gkW~V~~~~~~~~~~~~ifd~VvVc 148 (448)
T KOG1399|consen 87 PSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDS--IDKGKWRVTTKDNGTQIEEEIFDAVVVC 148 (448)
T ss_pred CCHHHHHHHHHHHHHhcChhhheEecccEEEEee--ccCCceeEEEecCCcceeEEEeeEEEEc
Confidence 444344444555555544 57999999999987 66 69999876432 23469999999
No 102
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=75.00 E-value=7.7 Score=34.69 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=33.7
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCC
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVS 136 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa 136 (204)
.++++++++.|++++. .++++.+...+|+.+ .+|.||+|.-..|.
T Consensus 229 ~gI~v~~~~~v~~i~~--~~~~~~v~~~~g~~i-~~D~vi~a~G~~p~ 273 (461)
T PRK05249 229 SGVTIRHNEEVEKVEG--GDDGVIVHLKSGKKI-KADCLLYANGRTGN 273 (461)
T ss_pred cCCEEEECCEEEEEEE--eCCeEEEEECCCCEE-EeCEEEEeecCCcc
Confidence 4688999999999986 566788776666543 79999999433333
No 103
>PRK06184 hypothetical protein; Provisional
Probab=74.86 E-value=8.4 Score=34.95 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=34.1
Q ss_pred HHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEe---CCCCcccccCEEEecC
Q 028756 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSG---LDGQSLGQFNGVVASD 131 (204)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~---~~G~~~~~~d~VVla~ 131 (204)
|.+++.+ .+++|+++++|++++. +++++.+.. .+++. ..+|.||.||
T Consensus 115 L~~~l~~-~gv~i~~~~~v~~i~~--~~~~v~v~~~~~~~~~~-i~a~~vVgAD 164 (502)
T PRK06184 115 LRERLAE-LGHRVEFGCELVGFEQ--DADGVTARVAGPAGEET-VRARYLVGAD 164 (502)
T ss_pred HHHHHHH-CCCEEEeCcEEEEEEE--cCCcEEEEEEeCCCeEE-EEeCEEEECC
Confidence 4444444 3688999999999987 677887765 34433 4799999993
No 104
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=74.05 E-value=8.8 Score=34.32 Aligned_cols=39 Identities=10% Similarity=0.074 Sum_probs=31.1
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
.+++++++++|.+++. .+++..+...+|+.+ .+|.||+|
T Consensus 220 ~gV~i~~~~~v~~i~~--~~~~~~v~~~~g~~i-~~D~viva 258 (446)
T TIGR01424 220 RGIRIHPQTSLTSITK--TDDGLKVTLSHGEEI-VADVVLFA 258 (446)
T ss_pred CCCEEEeCCEEEEEEE--cCCeEEEEEcCCcEe-ecCEEEEe
Confidence 4788999999999986 556677776666544 79999999
No 105
>PRK06996 hypothetical protein; Provisional
Probab=73.73 E-value=9.5 Score=33.42 Aligned_cols=48 Identities=8% Similarity=-0.124 Sum_probs=34.9
Q ss_pred HHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCC--CcccccCEEEecC
Q 028756 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDG--QSLGQFNGVVASD 131 (204)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G--~~~~~~d~VVla~ 131 (204)
|.+.+.+ .+++++++++|++++. .+++|+++..+| +....+|.||-||
T Consensus 121 L~~~~~~-~g~~~~~~~~v~~~~~--~~~~v~v~~~~~~g~~~i~a~lvIgAD 170 (398)
T PRK06996 121 LARAVRG-TPVRWLTSTTAHAPAQ--DADGVTLALGTPQGARTLRARIAVQAE 170 (398)
T ss_pred HHHHHHh-CCCEEEcCCeeeeeee--cCCeEEEEECCCCcceEEeeeEEEECC
Confidence 3444433 3578999999999987 778999987644 2234789999995
No 106
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=72.61 E-value=11 Score=33.69 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=36.0
Q ss_pred HHHHHHhcCC--CCeeecCeeEEeEEee-----cCCCCEEEEeCCCCcccccCEEEecC
Q 028756 80 SICKALCHQP--GVESKFGVGVGRFEWL-----EDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 80 sl~~~La~~l--~~~i~~~~~V~~l~~~-----~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
.|.+.+.+.. +++++++++|++++.. .+++++.+...+|+.+ .+|.||-||
T Consensus 122 ~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i-~a~llVgAD 179 (437)
T TIGR01989 122 SLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVL-YTKLLIGAD 179 (437)
T ss_pred HHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEE-EeeEEEEec
Confidence 3455555433 3789999999999741 1245788888888654 789999994
No 107
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=72.54 E-value=8.6 Score=34.35 Aligned_cols=41 Identities=15% Similarity=0.033 Sum_probs=31.1
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCCCC-cccccCEEEecC
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ-SLGQFNGVVASD 131 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~-~~~~~d~VVla~ 131 (204)
.+++++++++|.+++. .++++.+...+|+ ....+|.||+|.
T Consensus 224 ~gi~i~~~~~v~~i~~--~~~~v~v~~~~g~~~~i~~D~vi~a~ 265 (461)
T TIGR01350 224 KGVKILTNTKVTAVEK--NDDQVVYENKGGETETLTGEKVLVAV 265 (461)
T ss_pred cCCEEEeCCEEEEEEE--eCCEEEEEEeCCcEEEEEeCEEEEec
Confidence 4688999999999986 5667777665662 223799999993
No 108
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=71.97 E-value=5.9 Score=34.40 Aligned_cols=52 Identities=23% Similarity=0.274 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCCeeecCeeEEeEEeecCC--CCEEEEeC--CC-CcccccCEEEec
Q 028756 79 NSICKALCHQPGVESKFGVGVGRFEWLEDK--NLWSVSGL--DG-QSLGQFNGVVAS 130 (204)
Q Consensus 79 ~sl~~~La~~l~~~i~~~~~V~~l~~~~~~--~~w~l~~~--~G-~~~~~~d~VVla 130 (204)
+.-++-.+++++..++++++|++|++...+ ..|+|... +| +..-.++.||++
T Consensus 98 ~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla 154 (341)
T PF13434_consen 98 NDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLA 154 (341)
T ss_dssp HHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE-
T ss_pred HHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEEC
Confidence 445666777777569999999999982221 24998873 33 222379999998
No 109
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=71.31 E-value=6.5 Score=34.16 Aligned_cols=39 Identities=13% Similarity=0.012 Sum_probs=28.4
Q ss_pred CCeeecCeeEEeEEeecCC-CCEEEEeCC---C-CcccccCEEEec
Q 028756 90 GVESKFGVGVGRFEWLEDK-NLWSVSGLD---G-QSLGQFNGVVAS 130 (204)
Q Consensus 90 ~~~i~~~~~V~~l~~~~~~-~~w~l~~~~---G-~~~~~~d~VVla 130 (204)
..+++.+++|++++. .+ ++|+|+..+ | .....+|.||+|
T Consensus 293 ~~~l~~~~~v~~~~~--~~~~~~~l~~~~~~~~~~~~~~~D~VilA 336 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQ--DGDGGVRLTLRHRQTGEEETLEVDAVILA 336 (341)
T ss_dssp -SEEETTEEEEEEEE--ES-SSEEEEEEETTT--EEEEEESEEEE-
T ss_pred CeEEeCCCEEEEEEE--CCCCEEEEEEEECCCCCeEEEecCEEEEc
Confidence 367899999999998 45 599997753 2 223379999999
No 110
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=70.68 E-value=15 Score=32.55 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=36.1
Q ss_pred cCcHHHHHHHhc---CCCCeeecCeeEEeEEeecCC-CCEEE--EeCCCCcccccCEEEecCC
Q 028756 76 PGMNSICKALCH---QPGVESKFGVGVGRFEWLEDK-NLWSV--SGLDGQSLGQFNGVVASDK 132 (204)
Q Consensus 76 ~Gm~sl~~~La~---~l~~~i~~~~~V~~l~~~~~~-~~w~l--~~~~G~~~~~~d~VVla~~ 132 (204)
++...+++.|.+ ..+++|+++++|++|.. ++ +++.+ ...++.....++.||+|.-
T Consensus 120 ~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~--~~~~g~v~gv~~~~~~~~i~ak~VIlAtG 180 (432)
T TIGR02485 120 GGGKALTNALYSSAERLGVEIRYGIAVDRIPP--EAFDGAHDGPLTTVGTHRITTQALVLAAG 180 (432)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEe--cCCCCeEEEEEEcCCcEEEEcCEEEEcCC
Confidence 456677777744 35689999999999986 42 45543 2222222236899999943
No 111
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=70.64 E-value=9.9 Score=33.61 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=31.5
Q ss_pred HHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCC-CCcccc--cCEEEec
Q 028756 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD-GQSLGQ--FNGVVAS 130 (204)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~-G~~~~~--~d~VVla 130 (204)
+.+.+..+++++++++|+++.+ .++.+.+...+ ++.+ . ||+||+|
T Consensus 51 ~~~~~~~gv~~~~~~~V~~id~--~~~~v~~~~~~~~~~~-~~~yd~lIiA 98 (427)
T TIGR03385 51 EVFIKKRGIDVKTNHEVIEVND--ERQTVVVRNNKTNETY-EESYDYLILS 98 (427)
T ss_pred HHHHHhcCCeEEecCEEEEEEC--CCCEEEEEECCCCCEE-ecCCCEEEEC
Confidence 3454555778889999999986 66666665432 3332 4 9999999
No 112
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=69.89 E-value=12 Score=33.33 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=34.7
Q ss_pred cCcHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 76 PGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 76 ~Gm~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
.-+.......++..+++++.+++|+++.. .++++.....+|+.+ .+|.||.|+
T Consensus 108 ~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~--~~g~v~~v~~~g~~i-~A~~VI~A~ 160 (428)
T PRK10157 108 SKFDAWLMEQAEEAGAQLITGIRVDNLVQ--RDGKVVGVEADGDVI-EAKTVILAD 160 (428)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEE--eCCEEEEEEcCCcEE-ECCEEEEEe
Confidence 33444333344446788999999999986 555554333455443 799999994
No 113
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=69.55 E-value=55 Score=29.93 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=30.4
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCC---CC-cccccCEEEec
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLD---GQ-SLGQFNGVVAS 130 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~---G~-~~~~~d~VVla 130 (204)
.+.+++.+++|+++.. ++++|.+...+ |+ ....++.||.|
T Consensus 168 ~Ga~i~~~~~V~~i~~--~~~~~~v~~~~~~~g~~~~i~a~~VVnA 211 (508)
T PRK12266 168 RGAEILTRTRVVSARR--ENGLWHVTLEDTATGKRYTVRARALVNA 211 (508)
T ss_pred cCCEEEcCcEEEEEEE--eCCEEEEEEEEcCCCCEEEEEcCEEEEC
Confidence 4688999999999987 66778776543 43 12379999999
No 114
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=68.31 E-value=14 Score=32.98 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=30.2
Q ss_pred CCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 88 ~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
..+++++++++|.+++. .++++.+..++|. + .+|.||++
T Consensus 211 ~~gV~v~~~~~v~~i~~--~~~~v~v~~~~g~-i-~~D~vl~a 249 (441)
T PRK08010 211 DQGVDIILNAHVERISH--HENQVQVHSEHAQ-L-AVDALLIA 249 (441)
T ss_pred hCCCEEEeCCEEEEEEE--cCCEEEEEEcCCe-E-EeCEEEEe
Confidence 34688999999999986 5566777665554 3 69999999
No 115
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=67.54 E-value=14 Score=32.32 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=30.9
Q ss_pred CCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 88 ~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
..+++++++++|++++. ++.+.+...+|+.+ .+|.||++.
T Consensus 198 ~~GV~i~~~~~V~~i~~---~~~~~v~l~~g~~i-~aD~Vv~a~ 237 (396)
T PRK09754 198 QAGVRILLNNAIEHVVD---GEKVELTLQSGETL-QADVVIYGI 237 (396)
T ss_pred HCCCEEEeCCeeEEEEc---CCEEEEEECCCCEE-ECCEEEECC
Confidence 35788999999999973 44567777777654 799999983
No 116
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=67.39 E-value=9.6 Score=34.32 Aligned_cols=53 Identities=25% Similarity=0.358 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCC--CeeecCeeEEeEEeecCCCCEEEEeCCCCcc-cccCEEEecC
Q 028756 79 NSICKALCHQPG--VESKFGVGVGRFEWLEDKNLWSVSGLDGQSL-GQFNGVVASD 131 (204)
Q Consensus 79 ~sl~~~La~~l~--~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~-~~~d~VVla~ 131 (204)
....+.-++..+ .+|++++.|..+.+..+++.|.|+.++|... ..+|.||+|+
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~AT 140 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVAT 140 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEee
Confidence 444444444333 5688888888888744556899998877532 2499999993
No 117
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=66.32 E-value=6 Score=35.99 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=47.9
Q ss_pred EeCcCcHHHHHHHhcCC---CCeeecCeeEEeEEeecCCC-CEEEEeCCCCcccccCEEEecCCCCCCcchhcccC
Q 028756 73 VGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKN-LWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTG 144 (204)
Q Consensus 73 vg~~Gm~sl~~~La~~l---~~~i~~~~~V~~l~~~~~~~-~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~~ll~ 144 (204)
--.+||.++++++++.+ +.+|.+...|.+|.- +++ -.-|...+|+.. .. .+|+ +|.+|-.....|+.
T Consensus 258 Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Ill--d~gka~GV~L~dG~ev-~s-k~Vv-SNAt~~~Tf~kLlp 328 (561)
T KOG4254|consen 258 YPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILL--DSGKAVGVRLADGTEV-RS-KIVV-SNATPWDTFEKLLP 328 (561)
T ss_pred CCCCChhHHHHHHHHHHHhccceeeehhhhhheec--cCCeEEEEEecCCcEE-Ee-eeee-cCCchHHHHHHhCC
Confidence 34799999999999875 478999999999985 332 234566788764 34 4555 35666666667764
No 118
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=65.26 E-value=18 Score=33.22 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=34.4
Q ss_pred HHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeC--CCCcccccCEEEecC
Q 028756 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQSLGQFNGVVASD 131 (204)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~--~G~~~~~~d~VVla~ 131 (204)
|.+++.+..+++++++++|++++. ++++|.+... +|.....+|.||.||
T Consensus 131 L~~~~~~~~~v~v~~~~~v~~i~~--~~~~v~v~~~~~~g~~~i~ad~vVgAD 181 (547)
T PRK08132 131 LVERAQALPNIDLRWKNKVTGLEQ--HDDGVTLTVETPDGPYTLEADWVIACD 181 (547)
T ss_pred HHHHHHhCCCcEEEeCCEEEEEEE--cCCEEEEEEECCCCcEEEEeCEEEECC
Confidence 445555433578999999999987 6778876543 443223789999994
No 119
>PRK14727 putative mercuric reductase; Provisional
Probab=65.08 E-value=17 Score=32.92 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=30.1
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
.+++++++++|.+++. .++++.+...+|+ + .+|.||+|
T Consensus 241 ~GV~i~~~~~V~~i~~--~~~~~~v~~~~g~-i-~aD~VlvA 278 (479)
T PRK14727 241 EGIEVLNNTQASLVEH--DDNGFVLTTGHGE-L-RAEKLLIS 278 (479)
T ss_pred CCCEEEcCcEEEEEEE--eCCEEEEEEcCCe-E-EeCEEEEc
Confidence 4688999999999986 5667777766654 3 68999999
No 120
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=64.61 E-value=1.1e+02 Score=27.95 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=31.1
Q ss_pred CCCCeeecCeeEEeEEeecCCCCEEEEeCCC--C-cccccCEEEec
Q 028756 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDG--Q-SLGQFNGVVAS 130 (204)
Q Consensus 88 ~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G--~-~~~~~d~VVla 130 (204)
..+.+++.+++|+++.+ .++.|.+...++ + ....++.||.|
T Consensus 167 ~~Ga~i~~~~~V~~i~~--~~~~~~v~~~~~~g~~~~i~a~~VVnA 210 (502)
T PRK13369 167 ERGATILTRTRCVSARR--EGGLWRVETRDADGETRTVRARALVNA 210 (502)
T ss_pred HCCCEEecCcEEEEEEE--cCCEEEEEEEeCCCCEEEEEecEEEEC
Confidence 35788999999999987 677788876543 2 12368999999
No 121
>PRK06175 L-aspartate oxidase; Provisional
Probab=64.48 E-value=18 Score=32.30 Aligned_cols=51 Identities=6% Similarity=-0.139 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCCeeecCeeEEeEEeecCCCC---EEEEeCCCCc-ccccCEEEecCCC
Q 028756 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQS-LGQFNGVVASDKN 133 (204)
Q Consensus 80 sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~---w~l~~~~G~~-~~~~d~VVla~~~ 133 (204)
.|.+.+.+..+++|+++++|+.|.. ++++ +.+.. +|+. ...++.||||+-+
T Consensus 133 ~L~~~~~~~~gV~i~~~t~v~~Li~--~~~~v~Gv~~~~-~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 133 ILLKKVKKRKNITIIENCYLVDIIE--NDNTCIGAICLK-DNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHhcCCCEEEECcEeeeeEe--cCCEEEEEEEEE-CCcEEEEEcCeEEEccCc
Confidence 3444444444688999999999975 4442 22222 3332 2368999999433
No 122
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=64.34 E-value=25 Score=31.62 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=31.0
Q ss_pred CCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 90 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 90 ~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
++++++++.|++++. .+++..+...+|+.+ .+|.||++.
T Consensus 223 gI~i~~~~~V~~i~~--~~~~v~v~~~~g~~i-~~D~vl~a~ 261 (452)
T TIGR03452 223 KWDIRLGRNVTAVEQ--DGDGVTLTLDDGSTV-TADVLLVAT 261 (452)
T ss_pred CCEEEeCCEEEEEEE--cCCeEEEEEcCCCEE-EcCEEEEee
Confidence 578999999999986 566777776666543 799999993
No 123
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=64.29 E-value=17 Score=32.42 Aligned_cols=46 Identities=9% Similarity=0.064 Sum_probs=32.4
Q ss_pred HHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCC-CCc-ccccCEEEec
Q 028756 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLD-GQS-LGQFNGVVAS 130 (204)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~-G~~-~~~~d~VVla 130 (204)
+.+.+..+++++++++|++|.. +++...+...+ ++. ...||+||+|
T Consensus 65 ~~~~~~~~i~v~~~~~V~~Id~--~~~~v~~~~~~~~~~~~~~yd~lviA 112 (438)
T PRK13512 65 EKFYDRKQITVKTYHEVIAIND--ERQTVTVLNRKTNEQFEESYDKLILS 112 (438)
T ss_pred HHHHHhCCCEEEeCCEEEEEEC--CCCEEEEEECCCCcEEeeecCEEEEC
Confidence 4454545778899999999987 66667676543 222 1368999999
No 124
>PRK07538 hypothetical protein; Provisional
Probab=63.74 E-value=21 Score=31.42 Aligned_cols=49 Identities=20% Similarity=0.121 Sum_probs=31.9
Q ss_pred HHHHHhcCCC-CeeecCeeEEeEEeecCCCCEEEEeCCC---C-cccccCEEEecC
Q 028756 81 ICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDG---Q-SLGQFNGVVASD 131 (204)
Q Consensus 81 l~~~La~~l~-~~i~~~~~V~~l~~~~~~~~w~l~~~~G---~-~~~~~d~VVla~ 131 (204)
|.+.+.+.++ .+|+++++|++++. .+++..+...++ + ....+|.||-||
T Consensus 108 L~~~~~~~~g~~~i~~~~~v~~~~~--~~~~~~~~~~~~~~g~~~~~~adlvIgAD 161 (413)
T PRK07538 108 LLDAVRERLGPDAVRTGHRVVGFEQ--DADVTVVFLGDRAGGDLVSVRGDVLIGAD 161 (413)
T ss_pred HHHHHHhhcCCcEEEcCCEEEEEEe--cCCceEEEEeccCCCccceEEeeEEEECC
Confidence 4445444445 46999999999986 556665544332 1 223689999884
No 125
>PRK14694 putative mercuric reductase; Provisional
Probab=63.23 E-value=23 Score=31.85 Aligned_cols=41 Identities=7% Similarity=0.164 Sum_probs=30.5
Q ss_pred cCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 87 ~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
+..++++++++.|.+++. +++.+.+.+.++ . ..+|.||+|.
T Consensus 229 ~~~GI~v~~~~~v~~i~~--~~~~~~v~~~~~-~-i~~D~vi~a~ 269 (468)
T PRK14694 229 RREGIEVLKQTQASEVDY--NGREFILETNAG-T-LRAEQLLVAT 269 (468)
T ss_pred HhCCCEEEeCCEEEEEEE--cCCEEEEEECCC-E-EEeCEEEEcc
Confidence 335688999999999986 555666665554 3 3799999983
No 126
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=62.73 E-value=73 Score=27.91 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=40.9
Q ss_pred eEEe-CcCcHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 71 KYVG-VPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 71 ~~vg-~~Gm~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
.|+. ..-+.......|+..+.+++.+++|..+.. +++++.+....|.....++.||.|+
T Consensus 89 ~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~--~~~~~~~~~~~~~~e~~a~~vI~Ad 148 (396)
T COG0644 89 GYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIR--EDDGVVVGVRAGDDEVRAKVVIDAD 148 (396)
T ss_pred eEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEE--eCCcEEEEEEcCCEEEEcCEEEECC
Confidence 4443 444455445555567889999999999998 7777766555442234799999994
No 127
>PRK06185 hypothetical protein; Provisional
Probab=62.26 E-value=23 Score=30.92 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=30.7
Q ss_pred HHHhcCCCCeeecCeeEEeEEeecCCCCE---EEEeCCCCcccccCEEEecC
Q 028756 83 KALCHQPGVESKFGVGVGRFEWLEDKNLW---SVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~l~~~~~~~~w---~l~~~~G~~~~~~d~VVla~ 131 (204)
+++.+..+++++.+++|+++.. .++++ .+...+|+....+|.||.||
T Consensus 116 ~~~~~~~~v~i~~~~~v~~~~~--~~~~v~~v~~~~~~g~~~i~a~~vI~Ad 165 (407)
T PRK06185 116 EEASAYPNFTLRMGAEVTGLIE--EGGRVTGVRARTPDGPGEIRADLVVGAD 165 (407)
T ss_pred HHHhhCCCcEEEeCCEEEEEEE--eCCEEEEEEEEcCCCcEEEEeCEEEECC
Confidence 3333333578999999999987 55554 33334553224799999994
No 128
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=62.23 E-value=20 Score=32.18 Aligned_cols=42 Identities=14% Similarity=-0.083 Sum_probs=28.9
Q ss_pred CCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 88 ~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
..+++++++++|++++. .++...+...++.....+|.||+|.
T Consensus 223 ~~GI~i~~~~~V~~i~~--~~~~v~~~~~g~~~~i~~D~vivA~ 264 (458)
T PRK06912 223 NDGVKIFTGAALKGLNS--YKKQALFEYEGSIQEVNAEFVLVSV 264 (458)
T ss_pred HCCCEEEECCEEEEEEE--cCCEEEEEECCceEEEEeCEEEEec
Confidence 35789999999999986 5555555432221223799999994
No 129
>PRK08244 hypothetical protein; Provisional
Probab=61.91 E-value=19 Score=32.56 Aligned_cols=52 Identities=23% Similarity=0.096 Sum_probs=35.5
Q ss_pred cHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeC--CCCcccccCEEEecC
Q 028756 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQSLGQFNGVVASD 131 (204)
Q Consensus 78 m~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~--~G~~~~~~d~VVla~ 131 (204)
+..+....++..+++++++++|++++. .++++.++.. +|.....+|.||.||
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~--~~~~v~v~~~~~~g~~~i~a~~vVgAD 155 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQ--DGDGVEVVVRGPDGLRTLTSSYVVGAD 155 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEE--cCCeEEEEEEeCCccEEEEeCEEEECC
Confidence 344444334445788999999999987 6777776543 453224799999994
No 130
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=60.98 E-value=21 Score=32.01 Aligned_cols=50 Identities=10% Similarity=0.027 Sum_probs=32.5
Q ss_pred HHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeC--CCCcccccCEEEecC
Q 028756 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQSLGQFNGVVASD 131 (204)
Q Consensus 80 sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~--~G~~~~~~d~VVla~ 131 (204)
...+...+..+++++++++|++++. ++++..+... ++.....+|.||+|.
T Consensus 211 ~~l~~~l~~~gV~i~~~~~V~~i~~--~~~~~~v~~~~~~~~~~i~~D~ViiA~ 262 (463)
T TIGR02053 211 AAVEEALAEEGIEVVTSAQVKAVSV--RGGGKIITVEKPGGQGEVEADELLVAT 262 (463)
T ss_pred HHHHHHHHHcCCEEEcCcEEEEEEE--cCCEEEEEEEeCCCceEEEeCEEEEeE
Confidence 3333444445788999999999986 5555555543 222223799999993
No 131
>PRK07846 mycothione reductase; Reviewed
Probab=60.32 E-value=25 Score=31.55 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=32.5
Q ss_pred CCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCC
Q 028756 90 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVS 136 (204)
Q Consensus 90 ~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa 136 (204)
+++++++++|++++. .+++..+...+|+.+ .+|.||+|.-..|.
T Consensus 220 ~v~i~~~~~v~~i~~--~~~~v~v~~~~g~~i-~~D~vl~a~G~~pn 263 (451)
T PRK07846 220 RWDVRLGRNVVGVSQ--DGSGVTLRLDDGSTV-EADVLLVATGRVPN 263 (451)
T ss_pred CeEEEeCCEEEEEEE--cCCEEEEEECCCcEe-ecCEEEEEECCccC
Confidence 578999999999986 555666776667654 79999999433343
No 132
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=60.19 E-value=23 Score=31.86 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=31.9
Q ss_pred CCCCeeecCeeEEeEEeecCCCCEEEEeC--CCC-cccccCEEEecCCCCCC
Q 028756 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGL--DGQ-SLGQFNGVVASDKNVVS 136 (204)
Q Consensus 88 ~l~~~i~~~~~V~~l~~~~~~~~w~l~~~--~G~-~~~~~d~VVla~~~~pa 136 (204)
..+++++++++|++++. .+++..+... +|+ ....+|.||++.-..|.
T Consensus 225 ~~gV~i~~~~~v~~i~~--~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 225 KLGVKILTGTKVESIDD--NGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred HCCCEEEECCEEEEEEE--eCCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence 34789999999999986 5556655443 553 22379999999433343
No 133
>PRK06126 hypothetical protein; Provisional
Probab=60.05 E-value=22 Score=32.61 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=29.9
Q ss_pred CCeeecCeeEEeEEeecCCCCEEEEeC---CCC-cccccCEEEecC
Q 028756 90 GVESKFGVGVGRFEWLEDKNLWSVSGL---DGQ-SLGQFNGVVASD 131 (204)
Q Consensus 90 ~~~i~~~~~V~~l~~~~~~~~w~l~~~---~G~-~~~~~d~VVla~ 131 (204)
+++|+++++|++++. +++++.+... +|+ ....+|.||.||
T Consensus 141 ~v~i~~~~~v~~i~~--~~~~v~v~~~~~~~g~~~~i~ad~vVgAD 184 (545)
T PRK06126 141 GVTLRYGHRLTDFEQ--DADGVTATVEDLDGGESLTIRADYLVGCD 184 (545)
T ss_pred CceEEeccEEEEEEE--CCCeEEEEEEECCCCcEEEEEEEEEEecC
Confidence 578999999999987 6677776542 353 223689999994
No 134
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=59.09 E-value=27 Score=30.23 Aligned_cols=38 Identities=24% Similarity=0.079 Sum_probs=28.3
Q ss_pred CCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 90 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 90 ~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
+++++ +++|..+.. ..++.|.+..++|..+ .++.||.|
T Consensus 99 gv~~~-~~~v~~i~~-~~~~~~~v~~~~g~~~-~a~~VI~A 136 (388)
T TIGR01790 99 GVLWL-ERKAIHAEA-DGVALSTVYCAGGQRI-QARLVIDA 136 (388)
T ss_pred CcEEE-ccEEEEEEe-cCCceeEEEeCCCCEE-EeCEEEEC
Confidence 55564 668888886 2267898988877544 79999999
No 135
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=59.05 E-value=27 Score=33.88 Aligned_cols=58 Identities=12% Similarity=0.013 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCcch
Q 028756 79 NSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRF 139 (204)
Q Consensus 79 ~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~ 139 (204)
..+.+...+..++++++++.|+++.. .+..-.+...+|+.+ .+|.||++.-..|...+
T Consensus 185 ~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i-~~D~Vi~a~G~~Pn~~l 242 (785)
T TIGR02374 185 GRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSL-EADLIVMAAGIRPNDEL 242 (785)
T ss_pred HHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEE-EcCEEEECCCCCcCcHH
Confidence 34444444556889999999999975 443445666777654 79999999444444433
No 136
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=59.01 E-value=22 Score=31.48 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=29.0
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeC-CCCcc-cccCEEEec
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGL-DGQSL-GQFNGVVAS 130 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~-~G~~~-~~~d~VVla 130 (204)
.+++++++++|++|.+ +++.+.+... +|+.+ ..||+||+|
T Consensus 69 ~gv~~~~~~~V~~id~--~~~~v~~~~~~~~~~~~~~yd~lviA 110 (444)
T PRK09564 69 SGIDVKTEHEVVKVDA--KNKTITVKNLKTGSIFNDTYDKLMIA 110 (444)
T ss_pred CCCeEEecCEEEEEEC--CCCEEEEEECCCCCEEEecCCEEEEC
Confidence 4678889999999987 6667777643 34332 139999999
No 137
>PTZ00052 thioredoxin reductase; Provisional
Probab=58.65 E-value=27 Score=31.91 Aligned_cols=46 Identities=20% Similarity=0.039 Sum_probs=32.7
Q ss_pred CCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCC
Q 028756 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVS 136 (204)
Q Consensus 88 ~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa 136 (204)
..++++++++.|.+++. .++...+...+|+.+ .+|.||++--..|.
T Consensus 234 ~~GV~i~~~~~v~~v~~--~~~~~~v~~~~g~~i-~~D~vl~a~G~~pn 279 (499)
T PTZ00052 234 EQGTLFLEGVVPINIEK--MDDKIKVLFSDGTTE-LFDTVLYATGRKPD 279 (499)
T ss_pred HcCCEEEcCCeEEEEEE--cCCeEEEEECCCCEE-EcCEEEEeeCCCCC
Confidence 34688999999999986 445566666667654 79999998433343
No 138
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=58.54 E-value=28 Score=31.18 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=31.9
Q ss_pred CCCCeeecCeeEEeEEeecCCCC-EEEEeCCCCcccccCEEEecCCCCCC
Q 028756 88 QPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVS 136 (204)
Q Consensus 88 ~l~~~i~~~~~V~~l~~~~~~~~-w~l~~~~G~~~~~~d~VVla~~~~pa 136 (204)
..+++++++++|++++. .+++ ..+...+|+....+|.||++.--.|.
T Consensus 219 ~~gI~i~~~~~v~~i~~--~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 219 KEGINVHKLSKPVKVEK--TVEGKLVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred HcCCEEEcCCEEEEEEE--eCCceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 34688999999999986 4333 55666566332479999999333343
No 139
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=58.25 E-value=25 Score=31.24 Aligned_cols=46 Identities=11% Similarity=0.220 Sum_probs=32.0
Q ss_pred HHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
..+...+..+++++++++|++++. .++...+.. +|+.+ .+|.||+|
T Consensus 203 ~~~~~l~~~GI~i~~~~~V~~i~~--~~~~v~v~~-~g~~i-~~D~viva 248 (438)
T PRK07251 203 LAKQYMEEDGITFLLNAHTTEVKN--DGDQVLVVT-EDETY-RFDALLYA 248 (438)
T ss_pred HHHHHHHHcCCEEEcCCEEEEEEe--cCCEEEEEE-CCeEE-EcCEEEEe
Confidence 333333445788999999999986 555666654 34443 79999998
No 140
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=57.87 E-value=17 Score=35.27 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=30.0
Q ss_pred cCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 87 ~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
+..+++++++++|++|.+ . .+.|.+.+|..+ .||+||+|
T Consensus 65 ~~~gv~~~~g~~V~~Id~--~--~k~V~~~~g~~~-~yD~LVlA 103 (785)
T TIGR02374 65 EKHGITLYTGETVIQIDT--D--QKQVITDAGRTL-SYDKLILA 103 (785)
T ss_pred HHCCCEEEcCCeEEEEEC--C--CCEEEECCCcEe-eCCEEEEC
Confidence 345788999999999986 3 345666777654 79999999
No 141
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=57.67 E-value=19 Score=31.00 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=33.0
Q ss_pred cHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 78 m~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
+....+...+..+++++++++|.++.. . .+...+|+.+ .+|.||++.
T Consensus 193 ~~~~~~~~l~~~gV~v~~~~~v~~i~~--~----~v~~~~g~~i-~~D~vi~a~ 239 (364)
T TIGR03169 193 VRRLVLRLLARRGIEVHEGAPVTRGPD--G----ALILADGRTL-PADAILWAT 239 (364)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEcC--C----eEEeCCCCEE-ecCEEEEcc
Confidence 444445555556899999999999863 2 3555666554 799999993
No 142
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=57.42 E-value=30 Score=31.41 Aligned_cols=46 Identities=22% Similarity=0.154 Sum_probs=32.7
Q ss_pred HHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCc-ccccCEEEec
Q 028756 82 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQS-LGQFNGVVAS 130 (204)
Q Consensus 82 ~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~-~~~~d~VVla 130 (204)
.+.|.+ -++++++++.|++++. .+++..+..++|+. ...+|.|++|
T Consensus 221 ~~~l~~-~gv~i~~~~~v~~~~~--~~~~v~v~~~~g~~~~~~ad~vLvA 267 (454)
T COG1249 221 TKQLEK-GGVKILLNTKVTAVEK--KDDGVLVTLEDGEGGTIEADAVLVA 267 (454)
T ss_pred HHHHHh-CCeEEEccceEEEEEe--cCCeEEEEEecCCCCEEEeeEEEEc
Confidence 334444 4578999999999987 55556666666642 2369999999
No 143
>PRK10015 oxidoreductase; Provisional
Probab=56.83 E-value=28 Score=31.08 Aligned_cols=43 Identities=21% Similarity=0.123 Sum_probs=29.7
Q ss_pred hcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 86 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 86 a~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
++..+++++.+++|+.+.. +++++.....++.. ..+|.||+|+
T Consensus 118 a~~~Gv~i~~~~~V~~i~~--~~~~v~~v~~~~~~-i~A~~VI~Ad 160 (429)
T PRK10015 118 AEQAGAQFIPGVRVDALVR--EGNKVTGVQAGDDI-LEANVVILAD 160 (429)
T ss_pred HHHcCCEEECCcEEEEEEE--eCCEEEEEEeCCeE-EECCEEEEcc
Confidence 3345788999999999986 55666533233333 3789999984
No 144
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=56.15 E-value=26 Score=30.14 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=28.5
Q ss_pred HHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 84 ALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 84 ~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
.+++..+++++.+ +|++|.+ .++ +|...+|+.+ .||.||+|
T Consensus 62 ~~~~~~gv~~~~~-~v~~id~--~~~--~V~~~~g~~~-~yD~LviA 102 (364)
T TIGR03169 62 RLARQAGARFVIA-EATGIDP--DRR--KVLLANRPPL-SYDVLSLD 102 (364)
T ss_pred HHHHhcCCEEEEE-EEEEEec--ccC--EEEECCCCcc-cccEEEEc
Confidence 3444456777664 8999986 444 4666677654 79999999
No 145
>PRK13748 putative mercuric reductase; Provisional
Probab=56.12 E-value=29 Score=31.91 Aligned_cols=39 Identities=10% Similarity=0.157 Sum_probs=29.8
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
.+++++++++|.+++. .++.+.+...+|. + .+|.||+|.
T Consensus 323 ~gI~i~~~~~v~~i~~--~~~~~~v~~~~~~-i-~~D~vi~a~ 361 (561)
T PRK13748 323 EGIEVLEHTQASQVAH--VDGEFVLTTGHGE-L-RADKLLVAT 361 (561)
T ss_pred CCCEEEcCCEEEEEEe--cCCEEEEEecCCe-E-EeCEEEEcc
Confidence 4688999999999986 5566767665553 3 799999993
No 146
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=56.01 E-value=22 Score=31.57 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=32.6
Q ss_pred cHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 78 m~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
+....+..++..+++++++++|.++.. +++.+.+..+++ . ..+|.||+|.
T Consensus 193 ~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~-~-i~~d~vi~a~ 242 (444)
T PRK09564 193 ITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKG-E-YEADVVIVAT 242 (444)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCC-E-EEcCEEEECc
Confidence 333333334445788999999999974 444445555444 3 3799999983
No 147
>PRK06370 mercuric reductase; Validated
Probab=55.94 E-value=30 Score=30.99 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=29.7
Q ss_pred hcCCCCeeecCeeEEeEEeecCCCCEEEEe--CCCCcccccCEEEecC
Q 028756 86 CHQPGVESKFGVGVGRFEWLEDKNLWSVSG--LDGQSLGQFNGVVASD 131 (204)
Q Consensus 86 a~~l~~~i~~~~~V~~l~~~~~~~~w~l~~--~~G~~~~~~d~VVla~ 131 (204)
.+..+++++++++|.+++. .+++..+.. .++.....+|.||+|.
T Consensus 222 l~~~GV~i~~~~~V~~i~~--~~~~~~v~~~~~~~~~~i~~D~Vi~A~ 267 (463)
T PRK06370 222 LEREGIDVRLNAECIRVER--DGDGIAVGLDCNGGAPEITGSHILVAV 267 (463)
T ss_pred HHhCCCEEEeCCEEEEEEE--cCCEEEEEEEeCCCceEEEeCEEEECc
Confidence 3345788999999999986 555554433 2332224799999993
No 148
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=55.04 E-value=26 Score=30.45 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=29.4
Q ss_pred HHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 84 ALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 84 ~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
.+++..+++++++++|++|.+ .+ ..+.. +|..+ .||+||+|
T Consensus 66 ~~~~~~gv~~~~~~~V~~id~--~~--~~v~~-~~~~~-~yd~LVlA 106 (377)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDA--EA--QVVKS-QGNQW-QYDKLVLA 106 (377)
T ss_pred HHHHhCCCEEECCCEEEEEEC--CC--CEEEE-CCeEE-eCCEEEEC
Confidence 455556788999999999986 43 35554 34443 79999999
No 149
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=54.59 E-value=29 Score=31.28 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=29.0
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCC--CC-cccccCEEEecC
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLD--GQ-SLGQFNGVVASD 131 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~--G~-~~~~~d~VVla~ 131 (204)
.+++++++++|++++. .+++..+...+ |+ ....+|.||++.
T Consensus 237 ~gi~i~~~~~v~~i~~--~~~~v~v~~~~~~g~~~~i~~D~vl~a~ 280 (475)
T PRK06327 237 QGLDIHLGVKIGEIKT--GGKGVSVAYTDADGEAQTLEVDKLIVSI 280 (475)
T ss_pred cCcEEEeCcEEEEEEE--cCCEEEEEEEeCCCceeEEEcCEEEEcc
Confidence 4688999999999986 55566555332 32 223799999983
No 150
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=53.23 E-value=43 Score=29.21 Aligned_cols=39 Identities=21% Similarity=0.125 Sum_probs=28.6
Q ss_pred CCCeeecCeeEEeEEeecCCCCE-EEEeCCCCcccccCEEEec
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLW-SVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w-~l~~~~G~~~~~~d~VVla 130 (204)
.+++++.+++|++|+. .+++++ .+.+++|. + .++.||++
T Consensus 196 ~Gv~~~~~~~V~~i~~-~~~~~~~~v~t~~g~-i-~a~~vVva 235 (407)
T TIGR01373 196 RGVDIIQNCEVTGFIR-RDGGRVIGVETTRGF-I-GAKKVGVA 235 (407)
T ss_pred CCCEEEeCCEEEEEEE-cCCCcEEEEEeCCce-E-ECCEEEEC
Confidence 4788999999999975 124554 47777774 3 68998887
No 151
>PRK11445 putative oxidoreductase; Provisional
Probab=52.28 E-value=30 Score=29.80 Aligned_cols=40 Identities=18% Similarity=0.036 Sum_probs=31.1
Q ss_pred CCeeecCeeEEeEEeecCCCCEEEEe-CCCCc-ccccCEEEecC
Q 028756 90 GVESKFGVGVGRFEWLEDKNLWSVSG-LDGQS-LGQFNGVVASD 131 (204)
Q Consensus 90 ~~~i~~~~~V~~l~~~~~~~~w~l~~-~~G~~-~~~~d~VVla~ 131 (204)
+++++++++|..++. .+++|.+.. ++|+. ...+|.||.||
T Consensus 112 gv~v~~~~~v~~i~~--~~~~~~v~~~~~g~~~~i~a~~vV~Ad 153 (351)
T PRK11445 112 SVEVYHNSLCRKIWR--EDDGYHVIFRADGWEQHITARYLVGAD 153 (351)
T ss_pred CCEEEcCCEEEEEEE--cCCEEEEEEecCCcEEEEEeCEEEECC
Confidence 578999999999987 678898875 45531 23789999983
No 152
>PLN02463 lycopene beta cyclase
Probab=51.55 E-value=44 Score=30.20 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=30.1
Q ss_pred CCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 90 GVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 90 ~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
+++++ +++|++|+. .++++.|..++|..+ .+|.||.|+
T Consensus 128 GV~~~-~~~V~~I~~--~~~~~~V~~~dG~~i-~A~lVI~Ad 165 (447)
T PLN02463 128 GVQFH-QAKVKKVVH--EESKSLVVCDDGVKI-QASLVLDAT 165 (447)
T ss_pred CCEEE-eeEEEEEEE--cCCeEEEEECCCCEE-EcCEEEECc
Confidence 56665 579999987 677899988888654 789999994
No 153
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=51.10 E-value=38 Score=30.00 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=32.7
Q ss_pred HHHHHHhc---CCCCeeecCeeEEeEEeecCCC----CEEEEeCCCCc-ccccCEEEecCCC
Q 028756 80 SICKALCH---QPGVESKFGVGVGRFEWLEDKN----LWSVSGLDGQS-LGQFNGVVASDKN 133 (204)
Q Consensus 80 sl~~~La~---~l~~~i~~~~~V~~l~~~~~~~----~w~l~~~~G~~-~~~~d~VVla~~~ 133 (204)
.+++.|.+ ..+++++++++|++|.. +++ ++.+...+|+. ...++.||+|.-+
T Consensus 131 ~l~~~l~~~~~~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 131 EIVQKLYKKAKKEGIDTRLNSKVEDLIQ--DDQGTVVGVVVKGKGKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEeeEeEE--CCCCcEEEEEEEeCCCeEEEEecceEEEecCC
Confidence 45555443 34688999999999986 433 23444444431 2368999999443
No 154
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=50.68 E-value=41 Score=29.65 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=29.8
Q ss_pred HHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 83 KALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
+...+..+++++++++|.++.. ++ .. +...+|+.+ .+|.||++
T Consensus 186 ~~~l~~~gV~v~~~~~v~~i~~--~~-~~-v~~~~g~~i-~~D~vi~a 228 (427)
T TIGR03385 186 EEELKKHEINLRLNEEVDSIEG--EE-RV-KVFTSGGVY-QADMVILA 228 (427)
T ss_pred HHHHHHcCCEEEeCCEEEEEec--CC-CE-EEEcCCCEE-EeCEEEEC
Confidence 3334445788999999999975 33 33 344566543 79999999
No 155
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=50.54 E-value=1.1e+02 Score=27.99 Aligned_cols=40 Identities=13% Similarity=-0.045 Sum_probs=27.7
Q ss_pred CCCeeecCeeEEeEEeecCCCCE-EEEe---CCCC-cccccCEEEec
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLW-SVSG---LDGQ-SLGQFNGVVAS 130 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w-~l~~---~~G~-~~~~~d~VVla 130 (204)
.+.+++.+++|++|.+ .++++ .+.. .+|+ ....++.||.|
T Consensus 141 ~Ga~i~~~t~V~~i~~--~~~~v~gv~v~~~~~g~~~~i~a~~VVnA 185 (516)
T TIGR03377 141 HGARIFTYTKVTGLIR--EGGRVTGVKVEDHKTGEEERIEAQVVINA 185 (516)
T ss_pred cCCEEEcCcEEEEEEE--ECCEEEEEEEEEcCCCcEEEEEcCEEEEC
Confidence 4788999999999987 55554 3433 2342 12378999999
No 156
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=50.42 E-value=50 Score=28.75 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=31.2
Q ss_pred CeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 91 VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 91 ~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
..+++++.|++|+. .++++.+...+|..+ .++.||-|
T Consensus 101 ~~~~~~~~V~~i~~--~~~~~~v~~~~g~~i-~a~~VvDa 137 (374)
T PF05834_consen 101 GVIRLNARVTSIEE--TGDGVLVVLADGRTI-RARVVVDA 137 (374)
T ss_pred CeEEEccEEEEEEe--cCceEEEEECCCCEE-EeeEEEEC
Confidence 45889999999997 677888888888755 78999998
No 157
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=50.04 E-value=41 Score=30.60 Aligned_cols=50 Identities=14% Similarity=-0.010 Sum_probs=31.9
Q ss_pred hcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCC--cccccCEEEecCCCCCCc
Q 028756 86 CHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQ--SLGQFNGVVASDKNVVSP 137 (204)
Q Consensus 86 a~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~--~~~~~d~VVla~~~~pa~ 137 (204)
.+..++++++++.+.+++. .+++..+...+|+ ....+|.||++.-..|-.
T Consensus 230 L~~~gV~i~~~~~v~~v~~--~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 230 MEEHGVKFKRQFVPIKVEQ--IEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred HHHcCCEEEeCceEEEEEE--cCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 3345788999999999986 4445445444432 123799999994333433
No 158
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=49.60 E-value=45 Score=32.79 Aligned_cols=58 Identities=12% Similarity=0.020 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCCCeeecCeeEEeEEeecCC--CCEEEEeCCCCcccccCEEEecCCCCCCcch
Q 028756 79 NSICKALCHQPGVESKFGVGVGRFEWLEDK--NLWSVSGLDGQSLGQFNGVVASDKNVVSPRF 139 (204)
Q Consensus 79 ~sl~~~La~~l~~~i~~~~~V~~l~~~~~~--~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~ 139 (204)
..+.+...+..++++++++.|++|.. .+ ..-.+...+|+.+ .+|.||+|.-..|...+
T Consensus 190 ~~~l~~~L~~~GV~v~~~~~v~~I~~--~~~~~~~~v~~~dG~~i-~~D~Vv~A~G~rPn~~L 249 (847)
T PRK14989 190 GEQLRRKIESMGVRVHTSKNTLEIVQ--EGVEARKTMRFADGSEL-EVDFIVFSTGIRPQDKL 249 (847)
T ss_pred HHHHHHHHHHCCCEEEcCCeEEEEEe--cCCCceEEEEECCCCEE-EcCEEEECCCcccCchH
Confidence 34444445556899999999999975 32 2334666777654 79999999443444433
No 159
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=49.16 E-value=16 Score=20.22 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=15.9
Q ss_pred CCeeecCChHHHHHHHHHH
Q 028756 20 APFFTVTNNDVLALVREWE 38 (204)
Q Consensus 20 aqyft~~~~~f~~~v~~l~ 38 (204)
++++.++...|+++|++|-
T Consensus 5 p~vi~~d~~~Fr~lVQ~LT 23 (31)
T PF05678_consen 5 PTVIHTDPSNFRALVQRLT 23 (31)
T ss_pred CEEEEeCHHHHHHHHHHhH
Confidence 5678888889999999974
No 160
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=47.76 E-value=47 Score=28.48 Aligned_cols=47 Identities=26% Similarity=0.218 Sum_probs=34.2
Q ss_pred HHHHHHhcC---CC-CeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 80 SICKALCHQ---PG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 80 sl~~~La~~---l~-~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
.+++.|++. ++ ..+..++.|..++. ..+.|.+.+.+|. ..+|+||+|
T Consensus 157 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~--~~~~~~v~t~~g~--i~a~~vv~a 207 (387)
T COG0665 157 LLTRALAAAAEELGVVIIEGGTPVTSLER--DGRVVGVETDGGT--IEADKVVLA 207 (387)
T ss_pred HHHHHHHHHHHhcCCeEEEccceEEEEEe--cCcEEEEEeCCcc--EEeCEEEEc
Confidence 455555543 34 56777999999985 2257889888886 379999999
No 161
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=47.06 E-value=28 Score=31.18 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=33.3
Q ss_pred CcHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 77 GMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 77 Gm~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
..+..++...+.++++|++++.|++++. ++..+ .+|+....++.||-|
T Consensus 210 ~l~~~a~~~L~~~GV~v~l~~~Vt~v~~----~~v~~--~~g~~~I~~~tvvWa 257 (405)
T COG1252 210 KLSKYAERALEKLGVEVLLGTPVTEVTP----DGVTL--KDGEEEIPADTVVWA 257 (405)
T ss_pred HHHHHHHHHHHHCCCEEEcCCceEEECC----CcEEE--ccCCeeEecCEEEEc
Confidence 3445566677778999999999999974 34433 444321368888888
No 162
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=46.66 E-value=56 Score=28.97 Aligned_cols=42 Identities=21% Similarity=0.066 Sum_probs=30.0
Q ss_pred HHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 82 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 82 ~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
++...+..+++++++++|+++.. + . +..++|+.+ .+|.||++
T Consensus 234 ~~~~L~~~gV~v~~~~~v~~v~~--~--~--v~~~~g~~i-~~d~vi~~ 275 (424)
T PTZ00318 234 GQRRLRRLGVDIRTKTAVKEVLD--K--E--VVLKDGEVI-PTGLVVWS 275 (424)
T ss_pred HHHHHHHCCCEEEeCCeEEEEeC--C--E--EEECCCCEE-EccEEEEc
Confidence 33334446799999999999964 2 2 445677654 79999998
No 163
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=46.55 E-value=34 Score=30.24 Aligned_cols=55 Identities=7% Similarity=0.111 Sum_probs=40.7
Q ss_pred EeCcCcHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCc
Q 028756 73 VGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSP 137 (204)
Q Consensus 73 vg~~Gm~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~ 137 (204)
.-+.|.++|.+.|++..+++|++|+.+..+.. .++.|.+.. + . ..+.||.| .|.+
T Consensus 192 ~P~~Gyt~~~~~ml~~~~i~v~l~~~~~~~~~--~~~~~~~~~--~-~--~~~~vi~T---g~id 246 (377)
T TIGR00031 192 LPKGGYTKLFEKMLDHPLIDVKLNCHINLLKD--KDSQLHFAN--K-A--IRKPVIYT---GLID 246 (377)
T ss_pred cccccHHHHHHHHHhcCCCEEEeCCccceeec--cccceeecc--c-c--ccCcEEEe---cCch
Confidence 55788999999999877788999998888875 555576643 1 1 12889999 5554
No 164
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=45.70 E-value=74 Score=29.01 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=32.2
Q ss_pred CCCeeecCeeEEeEEeecCCCC-EEEEeCCCCcccccCEEEecCCCCCCcc
Q 028756 89 PGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVSPR 138 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~-w~l~~~~G~~~~~~d~VVla~~~~pa~~ 138 (204)
.++++++++.|.+++. .+++ -.+...+|+.+ .+|.||++.-..|...
T Consensus 244 ~GI~i~~~~~v~~i~~--~~~~~~~v~~~~g~~i-~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 244 NGINIMTNENPAKVTL--NADGSKHVTFESGKTL-DVDVVMMAIGRVPRTQ 291 (486)
T ss_pred cCCEEEcCCEEEEEEE--cCCceEEEEEcCCCEE-EcCEEEEeeCCCcCcc
Confidence 4688999999999986 4333 44555566543 7999999844444443
No 165
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=44.67 E-value=58 Score=29.73 Aligned_cols=43 Identities=9% Similarity=-0.061 Sum_probs=29.3
Q ss_pred CCCeeecCeeEEeEEeecCCCC---EEEEeCCCC-cccccCEEEecCCC
Q 028756 89 PGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQ-SLGQFNGVVASDKN 133 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~---w~l~~~~G~-~~~~~d~VVla~~~ 133 (204)
.+++++++++|++|.. ++++ +.+...+|+ ....++.||+|.-+
T Consensus 203 ~gv~i~~~t~v~~l~~--~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG 249 (506)
T PRK06481 203 RKIPLFVNADVTKITE--KDGKVTGVKVKINGKETKTISSKAVVVTTGG 249 (506)
T ss_pred cCCeEEeCCeeEEEEe--cCCEEEEEEEEeCCCeEEEEecCeEEEeCCC
Confidence 4688999999999985 4443 445444433 22368999999544
No 166
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=44.32 E-value=42 Score=29.40 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=27.7
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
.++++++++.|..+.+ .+. .+...+|+.+ .||+||+|
T Consensus 71 ~~i~~~~g~~V~~id~--~~~--~v~~~~g~~~-~yd~LViA 107 (396)
T PRK09754 71 NNVHLHSGVTIKTLGR--DTR--ELVLTNGESW-HWDQLFIA 107 (396)
T ss_pred CCCEEEcCCEEEEEEC--CCC--EEEECCCCEE-EcCEEEEc
Confidence 4678999999999986 432 3555566554 79999999
No 167
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=44.24 E-value=56 Score=29.40 Aligned_cols=40 Identities=20% Similarity=0.091 Sum_probs=28.4
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeC---CCC-cccccCEEEec
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGL---DGQ-SLGQFNGVVAS 130 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~---~G~-~~~~~d~VVla 130 (204)
.+++++++++|++++. .++++.+... +|+ ....+|.||++
T Consensus 228 ~gV~i~~~~~V~~i~~--~~~~v~v~~~~~~~g~~~~i~~D~vi~a 271 (466)
T PRK06115 228 QGMKFKLGSKVTGATA--GADGVSLTLEPAAGGAAETLQADYVLVA 271 (466)
T ss_pred cCCEEEECcEEEEEEE--cCCeEEEEEEEcCCCceeEEEeCEEEEc
Confidence 4688999999999986 5566665432 231 22379999999
No 168
>PRK07512 L-aspartate oxidase; Provisional
Probab=43.94 E-value=37 Score=31.10 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=30.6
Q ss_pred HHHHHHhcCCCCeeecCeeEEeEEeecCCCCE---EEEeCCCCcccccCEEEecCCC
Q 028756 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLW---SVSGLDGQSLGQFNGVVASDKN 133 (204)
Q Consensus 80 sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w---~l~~~~G~~~~~~d~VVla~~~ 133 (204)
.|.+.+.+..+++++.++.|+.|.. +++.+ .+...++.....++.||||+-+
T Consensus 141 ~L~~~~~~~~gV~i~~~~~v~~Li~--~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG 195 (513)
T PRK07512 141 ALIAAVRATPSITVLEGAEARRLLV--DDGAVAGVLAATAGGPVVLPARAVVLATGG 195 (513)
T ss_pred HHHHHHHhCCCCEEEECcChhheee--cCCEEEEEEEEeCCeEEEEECCEEEEcCCC
Confidence 3444443333588999999999975 44433 2322222122368999999444
No 169
>PF04839 PSRP-3_Ycf65: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65); InterPro: IPR006924 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This small acidic protein is found in 30S ribosomal subunit of cyanobacteria and plant plastids. In plants it has been named plastid-specific ribosomal protein 3 (PSRP-3), and in cyanobacteria it is named Ycf65. Plastid-specific ribosomal proteins may mediate the effects of nuclear factors on plastid translation. The acidic PSRPs are thought to contribute to protein-protein interactions in the 30S subunit, and are not thought to bind RNA [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome, 0009536 plastid; PDB: 2KT9_A.
Probab=43.80 E-value=27 Score=21.55 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=17.1
Q ss_pred CeeecCChHHHHHHHHHHhCcee
Q 028756 21 PFFTVTNNDVLALVREWESGGLV 43 (204)
Q Consensus 21 qyft~~~~~f~~~v~~l~~~g~v 43 (204)
=||||+...-..+-.+|.....|
T Consensus 4 yfFWPr~DAWe~lk~eLe~K~WI 26 (49)
T PF04839_consen 4 YFFWPREDAWEQLKNELESKPWI 26 (49)
T ss_dssp -EEETTS-HHHHHHHHHHHSTTS
T ss_pred cccCCCCcHHHHHHHHHhcCCCC
Confidence 38999999888888888776554
No 170
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=43.65 E-value=1.8e+02 Score=27.35 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=30.8
Q ss_pred HHHHHHHhc---CCCCeeecCeeEEeEEeecCCCCEEEE---eC-CCC----cccccCEEEec
Q 028756 79 NSICKALCH---QPGVESKFGVGVGRFEWLEDKNLWSVS---GL-DGQ----SLGQFNGVVAS 130 (204)
Q Consensus 79 ~sl~~~La~---~l~~~i~~~~~V~~l~~~~~~~~w~l~---~~-~G~----~~~~~d~VVla 130 (204)
.+|++-|.+ ..+++++++++|+.|....+++.-+++ .. +|+ .+...|.||+|
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivT 288 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVT 288 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEe
Confidence 444444433 347999999999999861112223321 21 222 34578999998
No 171
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=42.86 E-value=42 Score=27.75 Aligned_cols=51 Identities=12% Similarity=-0.006 Sum_probs=29.8
Q ss_pred CCeeecCeeEEeEEeecCCCC---EEEEeCCCC---cccccCEEEecCCCCCCcchhccc
Q 028756 90 GVESKFGVGVGRFEWLEDKNL---WSVSGLDGQ---SLGQFNGVVASDKNVVSPRFRDVT 143 (204)
Q Consensus 90 ~~~i~~~~~V~~l~~~~~~~~---w~l~~~~G~---~~~~~d~VVla~~~~pa~~~~~ll 143 (204)
+.+|+.+++|++|.....+++ ..+...++. ....++.|||| .=+-.+.+||
T Consensus 207 n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIla---AGai~Tp~LL 263 (296)
T PF00732_consen 207 NLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILA---AGAIGTPRLL 263 (296)
T ss_dssp TEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE----SHHHHHHHHH
T ss_pred CccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEec---cCCCCChhhh
Confidence 578999999999965112222 233344443 23357999999 5444444444
No 172
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=42.84 E-value=61 Score=29.39 Aligned_cols=50 Identities=12% Similarity=0.059 Sum_probs=30.3
Q ss_pred HHHHHHhcCCCCeeecCeeEEeEEeecCCCCEE-EEeCC-CC-cccccCEEEecC
Q 028756 80 SICKALCHQPGVESKFGVGVGRFEWLEDKNLWS-VSGLD-GQ-SLGQFNGVVASD 131 (204)
Q Consensus 80 sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~-l~~~~-G~-~~~~~d~VVla~ 131 (204)
.|.+.+.+..+++++.++.|++|.. +++... +...+ ++ ....++.||+|+
T Consensus 133 ~L~~~~~~~~gi~i~~~~~v~~l~~--~~g~v~Gv~~~~~~~~~~i~A~~VVlAt 185 (488)
T TIGR00551 133 TLVKKALNHPNIRIIEGENALDLLI--ETGRVVGVWVWNRETVETCHADAVVLAT 185 (488)
T ss_pred HHHHHHHhcCCcEEEECeEeeeeec--cCCEEEEEEEEECCcEEEEEcCEEEECC
Confidence 3444443334688999999999985 444432 22221 22 223689999994
No 173
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=42.35 E-value=63 Score=30.03 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=33.2
Q ss_pred HHHHHHHhc---CCCCeeecCeeEEeEEeecCCCC---EEEEeCCCCcccccC-EEEecCCCCC
Q 028756 79 NSICKALCH---QPGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQSLGQFN-GVVASDKNVV 135 (204)
Q Consensus 79 ~sl~~~La~---~l~~~i~~~~~V~~l~~~~~~~~---w~l~~~~G~~~~~~d-~VVla~~~~p 135 (204)
..|.+.|.+ ..+++|++++.|++|.. +++. ..+...++.....++ .||+|.-+.+
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~--~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLT--EGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEe--eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 445555533 35689999999999986 4543 333333343222454 7999954444
No 174
>KOG3086 consensus Predicted dioxygenase [General function prediction only]
Probab=42.21 E-value=23 Score=29.62 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=27.2
Q ss_pred CcceeeccCCCCceecccCCCeeecCChHHHHHHHHHHhC
Q 028756 1 MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESG 40 (204)
Q Consensus 1 maTRr~~~~~~~~~~fDhGaqyft~~~~~f~~~v~~l~~~ 40 (204)
||.|+. ..-|.-.|||.+.+++.++++.|+.+
T Consensus 1 MS~r~~--------~AtHAGSWYt~~~~~Ls~QL~~wL~~ 32 (296)
T KOG3086|consen 1 MSNRVV--------EATHAGSWYTASGPQLSAQLEGWLSQ 32 (296)
T ss_pred CCcccc--------ccccccccccCCHHHHHHHHHHHHhc
Confidence 666765 24788999999999999999999876
No 175
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=42.16 E-value=66 Score=30.01 Aligned_cols=53 Identities=15% Similarity=0.067 Sum_probs=32.3
Q ss_pred HHHHHHhc---CCCCeeecCeeEEeEEeecCCCCE---EEEeCCCCccccc-CEEEecCCCC
Q 028756 80 SICKALCH---QPGVESKFGVGVGRFEWLEDKNLW---SVSGLDGQSLGQF-NGVVASDKNV 134 (204)
Q Consensus 80 sl~~~La~---~l~~~i~~~~~V~~l~~~~~~~~w---~l~~~~G~~~~~~-d~VVla~~~~ 134 (204)
.|++.|.+ ..+++|+.+++|++|.. +++.+ .+...++.....+ +.||+|.-+-
T Consensus 218 ~l~~~L~~~a~~~Gv~i~~~t~v~~l~~--~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~ 277 (581)
T PRK06134 218 ALVARLLKSAEDLGVRIWESAPARELLR--EDGRVAGAVVETPGGLQEIRARKGVVLAAGGF 277 (581)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEE--eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCc
Confidence 34554443 34789999999999986 44443 2333333222356 8999994443
No 176
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=41.24 E-value=65 Score=30.02 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=34.7
Q ss_pred CcCcHHHHHHHhcC---CCCeeecCeeEEeEEeecCCCCE-EEEe-CCCCc-cccc-CEEEecCCCCCC
Q 028756 75 VPGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLW-SVSG-LDGQS-LGQF-NGVVASDKNVVS 136 (204)
Q Consensus 75 ~~Gm~sl~~~La~~---l~~~i~~~~~V~~l~~~~~~~~w-~l~~-~~G~~-~~~~-d~VVla~~~~pa 136 (204)
..| .+|++.|.+. .+++|+++++|++|.. +++.. -+.. .+|+. ...+ +.||||+-+-..
T Consensus 214 ~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~--~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~ 279 (564)
T PRK12845 214 AGG-QALAAGLFAGVLRAGIPIWTETSLVRLTD--DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDH 279 (564)
T ss_pred CCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEe--cCCEEEEEEEEECCcEEEEEcCCEEEEecCCccc
Confidence 345 6677766543 5689999999999975 43322 1211 23432 1234 689999554443
No 177
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=38.96 E-value=77 Score=28.47 Aligned_cols=52 Identities=17% Similarity=0.052 Sum_probs=32.9
Q ss_pred cCcHHHHHHHhcC---CCCeeecCeeEEeEEeecCCCCEEE-EeCCCC-cccccCEEEec
Q 028756 76 PGMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSV-SGLDGQ-SLGQFNGVVAS 130 (204)
Q Consensus 76 ~Gm~sl~~~La~~---l~~~i~~~~~V~~l~~~~~~~~w~l-~~~~G~-~~~~~d~VVla 130 (204)
+|| .+.+.|.+. .+++++.+++|.+++. .+++... ...+|+ ....+|.||+|
T Consensus 257 pG~-rL~~aL~~~l~~~Gv~I~~g~~V~~v~~--~~~~V~~v~~~~g~~~~i~AD~VVLA 313 (422)
T PRK05329 257 PGL-RLQNALRRAFERLGGRIMPGDEVLGAEF--EGGRVTAVWTRNHGDIPLRARHFVLA 313 (422)
T ss_pred chH-HHHHHHHHHHHhCCCEEEeCCEEEEEEE--eCCEEEEEEeeCCceEEEECCEEEEe
Confidence 454 344444443 4688999999999986 4544433 233443 22368999999
No 178
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=38.52 E-value=59 Score=31.99 Aligned_cols=39 Identities=8% Similarity=0.232 Sum_probs=29.2
Q ss_pred cCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 87 HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 87 ~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
+..+++++++++|++|.+ .. ..|.+.+|+.+ .||+||+|
T Consensus 70 ~~~gI~~~~g~~V~~Id~--~~--~~V~~~~G~~i-~yD~LVIA 108 (847)
T PRK14989 70 EKHGIKVLVGERAITINR--QE--KVIHSSAGRTV-FYDKLIMA 108 (847)
T ss_pred HhCCCEEEcCCEEEEEeC--CC--cEEEECCCcEE-ECCEEEEC
Confidence 335688999999999976 32 34556677554 79999999
No 179
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=37.36 E-value=43 Score=27.89 Aligned_cols=40 Identities=30% Similarity=0.336 Sum_probs=27.2
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEE--eC-CCCc-ccccCEEEec
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVS--GL-DGQS-LGQFNGVVAS 130 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~--~~-~G~~-~~~~d~VVla 130 (204)
.+++++++++|..++. +.+++.+. .. +|+. ...+|.||-|
T Consensus 124 ~gv~i~~~~~v~~~~~--d~~~~~~~~~~~~~g~~~~i~adlvVgA 167 (356)
T PF01494_consen 124 RGVDIRFGTRVVSIEQ--DDDGVTVVVRDGEDGEEETIEADLVVGA 167 (356)
T ss_dssp HTEEEEESEEEEEEEE--ETTEEEEEEEETCTCEEEEEEESEEEE-
T ss_pred hhhhheeeeecccccc--cccccccccccccCCceeEEEEeeeecc
Confidence 3578999999999987 55665443 33 3432 2378999999
No 180
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=37.30 E-value=2.1e+02 Score=26.41 Aligned_cols=40 Identities=18% Similarity=0.009 Sum_probs=27.3
Q ss_pred CCCeeecCeeEEeEEeecCCCCEE-EEe---CCCC-cccccCEEEec
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWS-VSG---LDGQ-SLGQFNGVVAS 130 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~-l~~---~~G~-~~~~~d~VVla 130 (204)
.+++++.+++|++|.+ .++++. +.. .+|+ ....+|.||.|
T Consensus 162 ~Ga~i~~~t~V~~i~~--~~~~v~gv~v~d~~~g~~~~i~A~~VVnA 206 (546)
T PRK11101 162 HGAQILTYHEVTGLIR--EGDTVCGVRVRDHLTGETQEIHAPVVVNA 206 (546)
T ss_pred CCCEEEeccEEEEEEE--cCCeEEEEEEEEcCCCcEEEEECCEEEEC
Confidence 4788999999999987 555432 332 2332 12368999999
No 181
>PTZ00058 glutathione reductase; Provisional
Probab=36.11 E-value=1.4e+02 Score=27.92 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=28.7
Q ss_pred CCCCeeecCeeEEeEEeecCC-CCEEEEeCCCCcccccCEEEecC
Q 028756 88 QPGVESKFGVGVGRFEWLEDK-NLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 88 ~l~~~i~~~~~V~~l~~~~~~-~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
..++++++++.|.+++. .+ ++..+...++.....+|.||++.
T Consensus 290 ~~GV~i~~~~~V~~I~~--~~~~~v~v~~~~~~~~i~aD~VlvA~ 332 (561)
T PTZ00058 290 KNNINIITHANVEEIEK--VKEKNLTIYLSDGRKYEHFDYVIYCV 332 (561)
T ss_pred HCCCEEEeCCEEEEEEe--cCCCcEEEEECCCCEEEECCEEEECc
Confidence 34788999999999986 33 34555443433223799999993
No 182
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=36.01 E-value=91 Score=28.11 Aligned_cols=39 Identities=10% Similarity=0.038 Sum_probs=27.5
Q ss_pred CeeecCeeEEeEEeecCCCCEEEEeCC--C-CcccccCEEEecC
Q 028756 91 VESKFGVGVGRFEWLEDKNLWSVSGLD--G-QSLGQFNGVVASD 131 (204)
Q Consensus 91 ~~i~~~~~V~~l~~~~~~~~w~l~~~~--G-~~~~~~d~VVla~ 131 (204)
++++++++|++++. .+++..+...+ | .....+|.||++.
T Consensus 229 v~i~~~~~v~~i~~--~~~~~~v~~~~~~~~~~~i~~D~vi~a~ 270 (471)
T PRK06467 229 FNIMLETKVTAVEA--KEDGIYVTMEGKKAPAEPQRYDAVLVAV 270 (471)
T ss_pred eEEEcCCEEEEEEE--cCCEEEEEEEeCCCcceEEEeCEEEEee
Confidence 77899999999986 55666665433 2 1123799999993
No 183
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=35.80 E-value=86 Score=28.03 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=34.5
Q ss_pred cCcHHHHHHHhc---CCCCeeecCeeEEeEEeecCCCCEE-EEe--CCCC-cccccCEEEecCC
Q 028756 76 PGMNSICKALCH---QPGVESKFGVGVGRFEWLEDKNLWS-VSG--LDGQ-SLGQFNGVVASDK 132 (204)
Q Consensus 76 ~Gm~sl~~~La~---~l~~~i~~~~~V~~l~~~~~~~~w~-l~~--~~G~-~~~~~d~VVla~~ 132 (204)
++-..+++.|.+ ..+++++++++|++|.. +++++. +.. .+|+ ....++.||+|.-
T Consensus 128 g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~--~~g~v~gv~~~~~~g~~~~i~a~~VIlAtG 189 (466)
T PRK08274 128 GGGKALVNALYRSAERLGVEIRYDAPVTALEL--DDGRFVGARAGSAAGGAERIRAKAVVLAAG 189 (466)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe--cCCeEEEEEEEccCCceEEEECCEEEECCC
Confidence 344556665544 34688999999999986 455443 332 2332 2236899999943
No 184
>PRK10262 thioredoxin reductase; Provisional
Probab=34.74 E-value=1.1e+02 Score=25.81 Aligned_cols=37 Identities=11% Similarity=0.294 Sum_probs=26.0
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
.+.+++.+ +|+.|+. .++.|.++.+.+ .+ .||.||+|
T Consensus 76 ~~~~~~~~-~v~~v~~--~~~~~~v~~~~~-~~-~~d~vilA 112 (321)
T PRK10262 76 FETEIIFD-HINKVDL--QNRPFRLTGDSG-EY-TCDALIIA 112 (321)
T ss_pred CCCEEEee-EEEEEEe--cCCeEEEEecCC-EE-EECEEEEC
Confidence 34455555 5778876 677898876544 33 79999999
No 185
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=34.18 E-value=92 Score=27.73 Aligned_cols=36 Identities=8% Similarity=0.200 Sum_probs=26.4
Q ss_pred CCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 88 ~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
..+++++++++|.+++. . .+...+|+.+ .+|.||++
T Consensus 201 ~~gI~i~~~~~v~~i~~----~--~v~~~~g~~~-~~D~vl~a 236 (438)
T PRK13512 201 KREIPYRLNEEIDAING----N--EVTFKSGKVE-HYDMIIEG 236 (438)
T ss_pred hcCCEEEECCeEEEEeC----C--EEEECCCCEE-EeCEEEEC
Confidence 35788999999999963 1 3555566543 78999998
No 186
>PF15320 RAM: mRNA cap methylation, RNMT-activating mini protein
Probab=33.05 E-value=23 Score=24.26 Aligned_cols=26 Identities=15% Similarity=0.479 Sum_probs=22.6
Q ss_pred eecCChHHHHHHH-HHHhCceeeeecC
Q 028756 23 FTVTNNDVLALVR-EWESGGLVAEWKV 48 (204)
Q Consensus 23 ft~~~~~f~~~v~-~l~~~g~v~~w~~ 48 (204)
||-.+++|++.++ .....-+|.+|..
T Consensus 11 fTe~D~ey~~~~~~~~~~PPIV~~W~~ 37 (81)
T PF15320_consen 11 FTEDDEEYMEYCKRPFPPPPIVEPWNS 37 (81)
T ss_pred ccccCHHHHHHHhCCCCCCCEecCccc
Confidence 7889999999997 5777889999976
No 187
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=31.87 E-value=1.3e+02 Score=27.80 Aligned_cols=43 Identities=9% Similarity=-0.078 Sum_probs=28.1
Q ss_pred CCCeeecCeeEEeEEeecCCCC-EE---EEe-CCCCc-ccccCEEEecCCC
Q 028756 89 PGVESKFGVGVGRFEWLEDKNL-WS---VSG-LDGQS-LGQFNGVVASDKN 133 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~-w~---l~~-~~G~~-~~~~d~VVla~~~ 133 (204)
.++++++++.|+.|.. ++++ .. +.. .+|+. ...++.||+|+-+
T Consensus 147 ~gv~i~~~t~v~~Li~--~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 147 ERIKILEEVMAIKLIV--DENREVIGAIFLDLRNGEIFPIYAKATILATGG 195 (543)
T ss_pred CCCEEEeCeEeeeeEE--eCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence 4688999999999976 4443 31 222 45542 2368999999433
No 188
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=31.37 E-value=1.1e+02 Score=28.37 Aligned_cols=54 Identities=7% Similarity=-0.009 Sum_probs=33.7
Q ss_pred cHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEE----EEeCCCCc-ccccCEEEecCCC
Q 028756 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWS----VSGLDGQS-LGQFNGVVASDKN 133 (204)
Q Consensus 78 m~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~----l~~~~G~~-~~~~d~VVla~~~ 133 (204)
+..|.+.+.+..+++++.++.|+.|.. +++.+. +...+|+. ...++.||+|+-+
T Consensus 140 ~~~L~~~~~~~~gv~i~~~~~v~~Li~--~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG 198 (577)
T PRK06069 140 MHTLYSRALRFDNIHFYDEHFVTSLIV--ENGVFKGVTAIDLKRGEFKVFQAKAGIIATGG 198 (577)
T ss_pred HHHHHHHHHhcCCCEEEECCEEEEEEE--ECCEEEEEEEEEcCCCeEEEEECCcEEEcCch
Confidence 344555554434678999999999975 444432 22235542 2368999999444
No 189
>PRK07121 hypothetical protein; Validated
Probab=31.31 E-value=1.3e+02 Score=27.10 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=31.8
Q ss_pred HHHHHHHhcC---CCCeeecCeeEEeEEeecCC-CCE-EEEeC-CCCc-cccc-CEEEecCCC
Q 028756 79 NSICKALCHQ---PGVESKFGVGVGRFEWLEDK-NLW-SVSGL-DGQS-LGQF-NGVVASDKN 133 (204)
Q Consensus 79 ~sl~~~La~~---l~~~i~~~~~V~~l~~~~~~-~~w-~l~~~-~G~~-~~~~-d~VVla~~~ 133 (204)
..+.+.|.+. .+++|+++++|++|.. ++ +.. -+... +|+. ...+ +.||||.-+
T Consensus 177 ~~~~~~L~~~~~~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 177 AMLMDPLAKRAAALGVQIRYDTRATRLIV--DDDGRVVGVEARRYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--CCCCCEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence 4456655443 4688999999999986 43 232 23222 3322 2256 999999443
No 190
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=31.18 E-value=1.2e+02 Score=26.93 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=63.6
Q ss_pred eecccCCCeeecCCh---HHHHHHHHHHhCceeeeecC-cceeeecCCceee-ecccCCCCceEEe-CcCc-------HH
Q 028756 14 MLFDHGAPFFTVTNN---DVLALVREWESGGLVAEWKV-NLGSFDRVSKKFV-NIQQDGMNKKYVG-VPGM-------NS 80 (204)
Q Consensus 14 ~~fDhGaqyft~~~~---~f~~~v~~l~~~g~v~~w~~-~~~~~~~~~~~~~-~~~~~~~~~~~vg-~~Gm-------~s 80 (204)
..+--|.+.++..++ ++.++...+...|+..+--. .-+. ..+. .++.+++...++- .+|. ++
T Consensus 84 ~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvr-----k~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~ 158 (399)
T KOG2820|consen 84 VKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVR-----KRFPSNIPLPDGWQGVVNESGGVINAAKSLKA 158 (399)
T ss_pred eeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHH-----HhCCCCccCCcchhhcccccccEeeHHHHHHH
Confidence 356667788887765 56666666666655433321 0000 0010 1111222222211 2222 22
Q ss_pred HHHHHhcCCCCeeecCeeEEeEEee-cCCCCEEEEeCCCCcccccCEEEecCCCCCCc
Q 028756 81 ICKALCHQPGVESKFGVGVGRFEWL-EDKNLWSVSGLDGQSLGQFNGVVASDKNVVSP 137 (204)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~l~~~-~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~ 137 (204)
+- ..++.+++.++.+..|..+++. ..+.+..|.+.+|..+ .++.+|+| +-+.
T Consensus 159 ~~-~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y-~akkiI~t---~GaW 211 (399)
T KOG2820|consen 159 LQ-DKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIY-HAKKIIFT---VGAW 211 (399)
T ss_pred HH-HHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCee-ecceEEEE---ecHH
Confidence 32 3344578889999999999851 2445677888888655 78999999 6554
No 191
>PLN02546 glutathione reductase
Probab=30.82 E-value=1.2e+02 Score=28.23 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=28.4
Q ss_pred CCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 88 QPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 88 ~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
..+++++++++|.++.. ..++...+...++. ...+|.||++.
T Consensus 305 ~~GV~i~~~~~v~~i~~-~~~g~v~v~~~~g~-~~~~D~Viva~ 346 (558)
T PLN02546 305 LRGIEFHTEESPQAIIK-SADGSLSLKTNKGT-VEGFSHVMFAT 346 (558)
T ss_pred HCCcEEEeCCEEEEEEE-cCCCEEEEEECCeE-EEecCEEEEee
Confidence 35789999999999975 12333555554443 33489999983
No 192
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=30.72 E-value=1.3e+02 Score=27.11 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=28.2
Q ss_pred cCCCCeeecCeeEEeEEeecCCCCEEE-EeCCCC-cccccCEEEecC
Q 028756 87 HQPGVESKFGVGVGRFEWLEDKNLWSV-SGLDGQ-SLGQFNGVVASD 131 (204)
Q Consensus 87 ~~l~~~i~~~~~V~~l~~~~~~~~w~l-~~~~G~-~~~~~d~VVla~ 131 (204)
+..+++++++++|.+++.. .+++..+ ...+|+ ....+|.||+|.
T Consensus 232 ~~~gI~i~~~~~v~~i~~~-~~~~~~~~~~~~g~~~~i~~D~vi~a~ 277 (472)
T PRK05976 232 KKLGVRVVTGAKVLGLTLK-KDGGVLIVAEHNGEEKTLEADKVLVSV 277 (472)
T ss_pred HhcCCEEEeCcEEEEEEEe-cCCCEEEEEEeCCceEEEEeCEEEEee
Confidence 3357899999999999731 1334433 334553 223789999993
No 193
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=30.48 E-value=1.3e+02 Score=27.43 Aligned_cols=51 Identities=12% Similarity=0.108 Sum_probs=29.8
Q ss_pred HHHHhcCCCCeeecCeeEEeEEeecCCCCEE-EE-eCCCCc-ccccC-EEEecCCCC
Q 028756 82 CKALCHQPGVESKFGVGVGRFEWLEDKNLWS-VS-GLDGQS-LGQFN-GVVASDKNV 134 (204)
Q Consensus 82 ~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~-l~-~~~G~~-~~~~d-~VVla~~~~ 134 (204)
.+.+.+..+++|+++++|++|.. +++... +. ..+|+. ...++ .||||.-+.
T Consensus 180 ~~~~~~~~gv~i~~~t~~~~Li~--~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~ 234 (513)
T PRK12837 180 LAALARFPNARLRLNTPLVELVV--EDGRVVGAVVERGGERRRVRARRGVLLAAGGF 234 (513)
T ss_pred HHHHHhCCCCEEEeCCEEEEEEe--cCCEEEEEEEEECCcEEEEEeCceEEEeCCCc
Confidence 33334434688999999999986 444331 11 123432 23565 799995444
No 194
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=30.37 E-value=1.4e+02 Score=27.89 Aligned_cols=42 Identities=14% Similarity=-0.021 Sum_probs=28.2
Q ss_pred CCeeecCeeEEeEEeecCCCCEE----EEeCCCC-cccccCEEEecCCC
Q 028756 90 GVESKFGVGVGRFEWLEDKNLWS----VSGLDGQ-SLGQFNGVVASDKN 133 (204)
Q Consensus 90 ~~~i~~~~~V~~l~~~~~~~~w~----l~~~~G~-~~~~~d~VVla~~~ 133 (204)
++++..++.|++|.. +++... +...+|+ ....++.||+|+-+
T Consensus 148 ~i~i~~~~~v~~Li~--~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 148 QIQRFDEHFVLDILV--DDGHVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred CcEEEeCeEEEEEEE--eCCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 577899999999986 444442 2334553 23368999999544
No 195
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=30.29 E-value=96 Score=27.05 Aligned_cols=84 Identities=10% Similarity=0.089 Sum_probs=47.8
Q ss_pred HHHHHHHHhCceeeeecCcceeeecCCceeeecccCCCCceEEeCcCcHHHHHHHhcCCCCeeecCeeEEeEEeecCCCC
Q 028756 31 LALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNL 110 (204)
Q Consensus 31 ~~~v~~l~~~g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~Gm~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~ 110 (204)
.+.+.++.+.-+-..|+.-..... +. .. .. ...|..... ..+-++|.+.++..++++++|.++.. ++
T Consensus 50 ~~~~~~~~~~~v~~~W~~~~v~~~--~~-~~---~l--~~~Y~~I~r-~~f~~~l~~~l~~~i~~~~~V~~v~~----~~ 116 (370)
T TIGR01789 50 SDAQHAWLADLVQTDWPGYEVRFP--KY-RR---KL--KTAYRSMTS-TRFHEGLLQAFPEGVILGRKAVGLDA----DG 116 (370)
T ss_pred chhhhhhhhhhheEeCCCCEEECc--ch-hh---hc--CCCceEEEH-HHHHHHHHHhhcccEEecCEEEEEeC----CE
Confidence 334444444545678887322211 10 00 00 123433333 55777777766644888999999853 35
Q ss_pred EEEEeCCCCcccccCEEEec
Q 028756 111 WSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 111 w~l~~~~G~~~~~~d~VVla 130 (204)
+.+ .+|+.+ .+|.||-|
T Consensus 117 v~l--~dg~~~-~A~~VI~A 133 (370)
T TIGR01789 117 VDL--APGTRI-NARSVIDC 133 (370)
T ss_pred EEE--CCCCEE-EeeEEEEC
Confidence 666 466554 78999998
No 196
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=29.83 E-value=1.6e+02 Score=25.54 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=28.5
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEe-CCCC-cccccCEEEecC
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSG-LDGQ-SLGQFNGVVASD 131 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~-~~G~-~~~~~d~VVla~ 131 (204)
.+++++++++|++++. .++++..|+. .+|+ ....+|.||-||
T Consensus 116 ~gv~v~~~~~v~~i~~-~~~~~~~V~~~~~G~~~~i~ad~vVgAD 159 (392)
T PRK08243 116 AGGPIRFEASDVALHD-FDSDRPYVTYEKDGEEHRLDCDFIAGCD 159 (392)
T ss_pred CCCeEEEeeeEEEEEe-cCCCceEEEEEcCCeEEEEEeCEEEECC
Confidence 4678999999999974 2344555655 3553 223689999884
No 197
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=29.27 E-value=1.6e+02 Score=26.24 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=25.8
Q ss_pred CeeecCeeEEeEEeecCCC-CEEEEeCCCC-cccccCEEEec
Q 028756 91 VESKFGVGVGRFEWLEDKN-LWSVSGLDGQ-SLGQFNGVVAS 130 (204)
Q Consensus 91 ~~i~~~~~V~~l~~~~~~~-~w~l~~~~G~-~~~~~d~VVla 130 (204)
++++++++|.+++. .++ +..+...+|+ ....+|.||++
T Consensus 224 I~i~~~~~v~~i~~--~~~~~v~~~~~~~~~~~i~~D~vi~a 263 (460)
T PRK06292 224 FKIKLGAKVTSVEK--SGDEKVEELEKGGKTETIEADYVLVA 263 (460)
T ss_pred cEEEcCCEEEEEEE--cCCceEEEEEcCCceEEEEeCEEEEc
Confidence 78999999999986 433 3444332332 22479999998
No 198
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=29.06 E-value=1.2e+02 Score=28.24 Aligned_cols=52 Identities=21% Similarity=0.139 Sum_probs=30.3
Q ss_pred HHHHHHhcC---CCCeeecCeeEEeEEeecCCCC---EEEEeCCCCc-cccc-CEEEecCCCC
Q 028756 80 SICKALCHQ---PGVESKFGVGVGRFEWLEDKNL---WSVSGLDGQS-LGQF-NGVVASDKNV 134 (204)
Q Consensus 80 sl~~~La~~---l~~~i~~~~~V~~l~~~~~~~~---w~l~~~~G~~-~~~~-d~VVla~~~~ 134 (204)
.|+++|.+. .+++++.+++|++|.. +++. +.+. .+|+. ...+ ++||||.-+.
T Consensus 222 ~l~~aL~~~~~~~Gv~i~~~t~v~~Li~--~~g~V~GV~~~-~~g~~~~i~A~~~VVlAtGg~ 281 (578)
T PRK12843 222 ALIGRLLYSLRARGVRILTQTDVESLET--DHGRVIGATVV-QGGVRRRIRARGGVVLATGGF 281 (578)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEe--eCCEEEEEEEe-cCCeEEEEEccceEEECCCCc
Confidence 344444433 4688999999999975 4442 2222 23332 1233 7899994443
No 199
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=28.22 E-value=1.2e+02 Score=28.40 Aligned_cols=51 Identities=16% Similarity=0.012 Sum_probs=30.4
Q ss_pred CCeeecCeeEEeEEeecCC-CCE---EEEeC-CCCc-ccccCEEEecCCCCCCcchh
Q 028756 90 GVESKFGVGVGRFEWLEDK-NLW---SVSGL-DGQS-LGQFNGVVASDKNVVSPRFR 140 (204)
Q Consensus 90 ~~~i~~~~~V~~l~~~~~~-~~w---~l~~~-~G~~-~~~~d~VVla~~~~pa~~~~ 140 (204)
+.+|+.++.|++|.....+ ++. .+.+. +|+. ...++.||||...+-.++++
T Consensus 228 n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL 284 (544)
T TIGR02462 228 RFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL 284 (544)
T ss_pred CEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence 3789999999999862112 222 23332 4542 24799999994444444433
No 200
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=28.15 E-value=75 Score=26.93 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=22.3
Q ss_pred ceecccCCCeeecCChHHHHHHHHHHhC
Q 028756 13 EMLFDHGAPFFTVTNNDVLALVREWESG 40 (204)
Q Consensus 13 ~~~fDhGaqyft~~~~~f~~~v~~l~~~ 40 (204)
+..||+|+.+|....+.+..+++++...
T Consensus 39 g~~~e~G~~~~~~~~~~~~~~~~~l~~~ 66 (450)
T PF01593_consen 39 GFTFELGAHRFFGMYPNLLNLIDELGLE 66 (450)
T ss_dssp TEEEESSS-EEETTSHHHHHHHHHHTHH
T ss_pred ceeecCCcccccccchhhHHHHHHhhhc
Confidence 3689999999998888788888887653
No 201
>PLN02661 Putative thiazole synthesis
Probab=28.15 E-value=1.2e+02 Score=26.77 Aligned_cols=51 Identities=18% Similarity=0.226 Sum_probs=32.5
Q ss_pred cHHHHHHHhcCCCCeeecCeeEEeEEeecCCCC-------EEEEeCCCC-------cccccCEEEec
Q 028756 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNL-------WSVSGLDGQ-------SLGQFNGVVAS 130 (204)
Q Consensus 78 m~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~-------w~l~~~~G~-------~~~~~d~VVla 130 (204)
++.|.++..+..+++++.++.|..|.. +++. |.+...++. ....++.||+|
T Consensus 175 ~stLi~ka~~~~gVkI~~~t~V~DLI~--~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlA 239 (357)
T PLN02661 175 TSTIMSKLLARPNVKLFNAVAAEDLIV--KGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSS 239 (357)
T ss_pred HHHHHHHHHhcCCCEEEeCeEeeeEEe--cCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEc
Confidence 355666666555688999999999986 4443 332211211 12378999999
No 202
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=27.65 E-value=98 Score=27.02 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=33.6
Q ss_pred CcHHHHHHHhcC---CCCeeecCeeEEeEEeecCCCCE---EEEe-CCCC-cccccCEEEecCCCCCC
Q 028756 77 GMNSICKALCHQ---PGVESKFGVGVGRFEWLEDKNLW---SVSG-LDGQ-SLGQFNGVVASDKNVVS 136 (204)
Q Consensus 77 Gm~sl~~~La~~---l~~~i~~~~~V~~l~~~~~~~~w---~l~~-~~G~-~~~~~d~VVla~~~~pa 136 (204)
+-..+.+.|.+. .+++|+++++|++|.. ++++. .+.. .+|+ ....+++||||.-+...
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~--e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLIT--EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEE--ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEE--eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 345555555554 3588999999999987 45432 2221 3454 22368999999555443
No 203
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=26.89 E-value=78 Score=30.71 Aligned_cols=45 Identities=11% Similarity=0.227 Sum_probs=34.5
Q ss_pred HHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecC
Q 028756 82 CKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASD 131 (204)
Q Consensus 82 ~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~ 131 (204)
.....+..+++++.+.+|+.|.+ .++ .|.++.|..+ .+|.+|+|+
T Consensus 65 ~~dwy~~~~i~L~~~~~v~~idr--~~k--~V~t~~g~~~-~YDkLilAT 109 (793)
T COG1251 65 RNDWYEENGITLYTGEKVIQIDR--ANK--VVTTDAGRTV-SYDKLIIAT 109 (793)
T ss_pred chhhHHHcCcEEEcCCeeEEecc--Ccc--eEEccCCcEe-ecceeEEec
Confidence 34666667889999999999986 433 3667777654 799999993
No 204
>PRK07804 L-aspartate oxidase; Provisional
Probab=26.72 E-value=1.5e+02 Score=27.37 Aligned_cols=52 Identities=13% Similarity=-0.004 Sum_probs=31.6
Q ss_pred HHHHHHhcC---CCCeeecCeeEEeEEeecCCC----CEEEE-----eCCCCcccccCEEEecCCC
Q 028756 80 SICKALCHQ---PGVESKFGVGVGRFEWLEDKN----LWSVS-----GLDGQSLGQFNGVVASDKN 133 (204)
Q Consensus 80 sl~~~La~~---l~~~i~~~~~V~~l~~~~~~~----~w~l~-----~~~G~~~~~~d~VVla~~~ 133 (204)
.+.+.|.+. .+++++.++.|+.|.. +++ +..+. ..+|.....++.||+|+-+
T Consensus 145 ~i~~~L~~~~~~~gV~i~~~~~v~~Li~--~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 145 EVQRALDAAVRADPLDIREHALALDLLT--DGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred HHHHHHHHHHHhCCCEEEECeEeeeeEE--cCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 344444433 4588999999999986 433 34443 1223222368999999433
No 205
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=26.52 E-value=1.7e+02 Score=27.09 Aligned_cols=43 Identities=14% Similarity=-0.075 Sum_probs=28.6
Q ss_pred CCCeeecCeeEEeEEeecCCCCEE---E-EeCCCCc-ccccCEEEecCCC
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWS---V-SGLDGQS-LGQFNGVVASDKN 133 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~---l-~~~~G~~-~~~~d~VVla~~~ 133 (204)
.+++++.++.|+.|.. +++.+. + ...+|+. ...++.||+|+-+
T Consensus 142 ~gv~i~~~~~v~~L~~--~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG 189 (566)
T TIGR01812 142 LGVSFFNEYFALDLIH--DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGG 189 (566)
T ss_pred cCCEEEeccEEEEEEE--eCCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence 3688999999999986 444442 1 2235542 2368999999443
No 206
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=26.36 E-value=1.4e+02 Score=27.43 Aligned_cols=55 Identities=20% Similarity=0.275 Sum_probs=33.5
Q ss_pred CCCCeeecCeeEEeEEeecCCCCE-EEEeC-CCC--cccccCEEEecCCCCCCcchhcccC
Q 028756 88 QPGVESKFGVGVGRFEWLEDKNLW-SVSGL-DGQ--SLGQFNGVVASDKNVVSPRFRDVTG 144 (204)
Q Consensus 88 ~l~~~i~~~~~V~~l~~~~~~~~w-~l~~~-~G~--~~~~~d~VVla~~~~pa~~~~~ll~ 144 (204)
..+.+|+.+++|++|.. ++++. -|... +|. ....++.||||.-.+-.|+++.+-+
T Consensus 206 r~nl~i~~~~~V~rI~~--~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SG 264 (532)
T TIGR01810 206 RPNLEVQTRAFVTKINF--EGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSG 264 (532)
T ss_pred CCCeEEEeCCEEEEEEe--cCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcC
Confidence 34588999999999987 44322 23222 222 1236899999944445566555544
No 207
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=26.19 E-value=40 Score=30.08 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=23.9
Q ss_pred eecccCCCeeecCChHHHHHHHHHHhC
Q 028756 14 MLFDHGAPFFTVTNNDVLALVREWESG 40 (204)
Q Consensus 14 ~~fDhGaqyft~~~~~f~~~v~~l~~~ 40 (204)
..||+|++||..+++.+.++++++...
T Consensus 54 ~~~e~G~~~i~~~~~~~~~l~~~lgl~ 80 (463)
T PRK12416 54 FIMESGADSIVARNEHVMPLVKDLNLE 80 (463)
T ss_pred EEEecCcHHHhcCCHHHHHHHHHcCCc
Confidence 579999999999999999999998654
No 208
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=25.98 E-value=46 Score=29.52 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=24.7
Q ss_pred eecccCCCeeecCChHHHHHHHHHHhCce
Q 028756 14 MLFDHGAPFFTVTNNDVLALVREWESGGL 42 (204)
Q Consensus 14 ~~fDhGaqyft~~~~~f~~~v~~l~~~g~ 42 (204)
..||+|+++|...++.+.++++++.....
T Consensus 53 ~~~e~G~~~~~~~~~~~~~l~~~lgl~~~ 81 (462)
T TIGR00562 53 YLIERGPDSFLERKKSAPDLVKDLGLEHV 81 (462)
T ss_pred EEEecCccccccCChHHHHHHHHcCCCcc
Confidence 57999999999999999999999865433
No 209
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=25.85 E-value=58 Score=28.08 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=25.6
Q ss_pred ecccCCCeeecCChHHHHHHHHHHhCceeeee
Q 028756 15 LFDHGAPFFTVTNNDVLALVREWESGGLVAEW 46 (204)
Q Consensus 15 ~fDhGaqyft~~~~~f~~~v~~l~~~g~v~~w 46 (204)
.||.|+++|...++.+.++++++.....+..|
T Consensus 37 ~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~ 68 (419)
T TIGR03467 37 TIDNGQHVLLGAYTNLLALLRRIGAEPRLQGP 68 (419)
T ss_pred ceecCCEEEEcccHHHHHHHHHhCCchhhhcc
Confidence 49999999998899999999998765444334
No 210
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.69 E-value=1.1e+02 Score=27.66 Aligned_cols=51 Identities=18% Similarity=0.144 Sum_probs=33.7
Q ss_pred cHHHHHHHhcC------CCCeeecCeeEEeEEeecCCCC-EEEEeC---CCC-cccccCEEEec
Q 028756 78 MNSICKALCHQ------PGVESKFGVGVGRFEWLEDKNL-WSVSGL---DGQ-SLGQFNGVVAS 130 (204)
Q Consensus 78 m~sl~~~La~~------l~~~i~~~~~V~~l~~~~~~~~-w~l~~~---~G~-~~~~~d~VVla 130 (204)
+..|-+.|-++ .++++..++.|.+++. .++| .+|... .|+ .....|+||+|
T Consensus 274 i~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~--~G~g~~~l~~~~~~~~~~~t~~~D~vIlA 335 (436)
T COG3486 274 IEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEP--AGDGRYRLTLRHHETGELETVETDAVILA 335 (436)
T ss_pred HHHHHHHHHHHHhcCCCCCeeeccccceeeeec--CCCceEEEEEeeccCCCceEEEeeEEEEe
Confidence 34455555443 2367889999999997 5556 877654 232 23368999999
No 211
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=25.26 E-value=1.8e+02 Score=25.27 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeC-CCCc-ccccCEEEecC
Q 028756 81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGL-DGQS-LGQFNGVVASD 131 (204)
Q Consensus 81 l~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~-~G~~-~~~~d~VVla~ 131 (204)
|.+++.+ .+.+++++++++.+.. .++++..|+.. +|+. ...+|.||-||
T Consensus 109 L~~~~~~-~g~~~~~~~~~v~~~~-~~~~~~~V~~~~~g~~~~i~adlvIGAD 159 (390)
T TIGR02360 109 LMEAREA-AGLTTVYDADDVRLHD-LAGDRPYVTFERDGERHRLDCDFIAGCD 159 (390)
T ss_pred HHHHHHh-cCCeEEEeeeeEEEEe-cCCCccEEEEEECCeEEEEEeCEEEECC
Confidence 3444332 3567899998888753 23445666664 6642 23689998884
No 212
>PF04417 DUF501: Protein of unknown function (DUF501); InterPro: IPR007511 This is a family of uncharacterised bacterial proteins.
Probab=24.76 E-value=25 Score=26.61 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=28.7
Q ss_pred CCCeeecCChHHHHHHHHHHhCceeeeecCcc
Q 028756 19 GAPFFTVTNNDVLALVREWESGGLVAEWKVNL 50 (204)
Q Consensus 19 Gaqyft~~~~~f~~~v~~l~~~g~v~~w~~~~ 50 (204)
.++-||-..|.+.+.|+.|+.+|.++..+..+
T Consensus 25 FPTlfwLtcP~L~~~isrLE~~G~i~~l~~~l 56 (139)
T PF04417_consen 25 FPTLFWLTCPYLVKAISRLEAEGGIAELEERL 56 (139)
T ss_pred CCccHhhcCHHHHHHHHHHHhcCHHHHHHHHh
Confidence 47889999999999999999999999998654
No 213
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=22.76 E-value=2.4e+02 Score=26.54 Aligned_cols=42 Identities=14% Similarity=-0.020 Sum_probs=27.2
Q ss_pred CCeeecCeeEEeEEeecCCCCE---EE-EeCCCCc-ccccCEEEecCCC
Q 028756 90 GVESKFGVGVGRFEWLEDKNLW---SV-SGLDGQS-LGQFNGVVASDKN 133 (204)
Q Consensus 90 ~~~i~~~~~V~~l~~~~~~~~w---~l-~~~~G~~-~~~~d~VVla~~~ 133 (204)
+++++.++.|..|.. +++++ .+ ...+|+. ...++.||+|+-+
T Consensus 147 gV~i~~~~~v~~Li~--~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (608)
T PRK06854 147 GDNVLNRVFITDLLV--DDNRIAGAVGFSVRENKFYVFKAKAVIVATGG 193 (608)
T ss_pred CCEEEeCCEEEEEEE--eCCEEEEEEEEEccCCcEEEEECCEEEECCCc
Confidence 488999999999975 34432 11 2234431 2368999999443
No 214
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=22.24 E-value=6.4e+02 Score=23.41 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=28.6
Q ss_pred HHHHhcCCCCeeecCeeEEeEEeecCCCCEE---EE-eCCCC----cccccCEEEec
Q 028756 82 CKALCHQPGVESKFGVGVGRFEWLEDKNLWS---VS-GLDGQ----SLGQFNGVVAS 130 (204)
Q Consensus 82 ~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~---l~-~~~G~----~~~~~d~VVla 130 (204)
.+.|.+ -+++++++++|+.|.-...++.-. +. ..+|+ .++.-|.|++|
T Consensus 214 ~~~L~~-~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT 269 (500)
T PF06100_consen 214 IRYLKS-QGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVT 269 (500)
T ss_pred HHHHHH-CCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEE
Confidence 334443 479999999999998622222211 11 13443 34567888887
No 215
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=22.24 E-value=1.5e+02 Score=27.27 Aligned_cols=67 Identities=21% Similarity=0.187 Sum_probs=47.1
Q ss_pred EeCcCcHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEecCCCCCCcchh
Q 028756 73 VGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFR 140 (204)
Q Consensus 73 vg~~Gm~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla~~~~pa~~~~ 140 (204)
...+...+..+.+.+..++++++++.+.+++....++.-.|...+|..+ .+|-||+-....|.-...
T Consensus 252 lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l-~adlvv~GiG~~p~t~~~ 318 (478)
T KOG1336|consen 252 LFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTL-EADLVVVGIGIKPNTSFL 318 (478)
T ss_pred hhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEe-ccCeEEEeeccccccccc
Confidence 4556666767777776779999999999998622234456777788754 799999985555555443
No 216
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=22.23 E-value=1.9e+02 Score=24.65 Aligned_cols=52 Identities=27% Similarity=0.287 Sum_probs=34.7
Q ss_pred cCcHHHHHHHhcCCCCeeecCeeEEeEEeecCCCCEE---EEeCCCCcccccCEEEec
Q 028756 76 PGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWS---VSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 76 ~Gm~sl~~~La~~l~~~i~~~~~V~~l~~~~~~~~w~---l~~~~G~~~~~~d~VVla 130 (204)
+.+......+.+..++++++++.|.++.. ..+... +...++.. ..+|.|+++
T Consensus 178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~-~~~d~~~~~ 232 (415)
T COG0446 178 PEVAEELAELLEKYGVELLLGTKVVGVEG--KGNTLVVERVVGIDGEE-IKADLVIIG 232 (415)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCceEEEEc--ccCcceeeEEEEeCCcE-EEeeEEEEe
Confidence 34555555555555688999999999986 444433 34455544 378999998
No 217
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.03 E-value=2.3e+02 Score=26.36 Aligned_cols=52 Identities=19% Similarity=0.079 Sum_probs=32.0
Q ss_pred HHHHHHhcC---CCCeeecCeeEEeEEeecCCCCEE----EEeCCCCc-ccccCEEEecCCC
Q 028756 80 SICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWS----VSGLDGQS-LGQFNGVVASDKN 133 (204)
Q Consensus 80 sl~~~La~~---l~~~i~~~~~V~~l~~~~~~~~w~----l~~~~G~~-~~~~d~VVla~~~ 133 (204)
.+.+.|.+. .++++..++.|+.|.. +++... +...+|+. ...+++||+|+-+
T Consensus 136 ~i~~~L~~~~~~~gi~i~~~t~v~~L~~--~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG 195 (575)
T PRK05945 136 AILHELVNNLRRYGVTIYDEWYVMRLIL--EDNQAKGVVMYHIADGRLEVVRAKAVMFATGG 195 (575)
T ss_pred HHHHHHHHHHhhCCCEEEeCcEEEEEEE--ECCEEEEEEEEEcCCCeEEEEECCEEEECCCC
Confidence 455544432 4688999999999975 444321 22335542 2368999999433
No 218
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=21.86 E-value=1.7e+02 Score=27.12 Aligned_cols=46 Identities=13% Similarity=0.243 Sum_probs=31.0
Q ss_pred HHHHHHh---cCCCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 80 SICKALC---HQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 80 sl~~~La---~~l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
.+.+.+. +..++++ .++.|+.+.. .++.+.+...+|. + .+|.||+|
T Consensus 61 ~l~~~l~~~~~~~gv~~-~~~~V~~i~~--~~~~~~V~~~~g~-~-~a~~lVlA 109 (555)
T TIGR03143 61 ELMQEMRQQAQDFGVKF-LQAEVLDVDF--DGDIKTIKTARGD-Y-KTLAVLIA 109 (555)
T ss_pred HHHHHHHHHHHHcCCEE-eccEEEEEEe--cCCEEEEEecCCE-E-EEeEEEEC
Confidence 4444443 2345666 4778999986 5667888776664 3 68899999
No 219
>PF05800 GvpO: Gas vesicle synthesis protein GvpO; InterPro: IPR008634 This family consists of archaeal GvpO proteins which are required for gas vesicle synthesis []. The family also contain related sequences from bacteria.; GO: 0031412 gas vesicle organization
Probab=21.56 E-value=1.3e+02 Score=21.41 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=17.7
Q ss_pred HHHhcCCCCeeecCeeEEeEEeecCCC-CEEEEe
Q 028756 83 KALCHQPGVESKFGVGVGRFEWLEDKN-LWSVSG 115 (204)
Q Consensus 83 ~~La~~l~~~i~~~~~V~~l~~~~~~~-~w~l~~ 115 (204)
.++++.++ +--..|+++++ .++ ||.+..
T Consensus 28 ~~~~eL~g---~~~e~V~~~~~--~edgGW~v~V 56 (100)
T PF05800_consen 28 EQLAELTG---HEPEGVSSVER--TEDGGWRVVV 56 (100)
T ss_pred HHHHHHhC---CCCceEEEEee--cCCCCeEEEE
Confidence 34444344 33458889988 555 999865
No 220
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=21.47 E-value=2.8e+02 Score=26.04 Aligned_cols=41 Identities=12% Similarity=-0.010 Sum_probs=26.8
Q ss_pred CCeeecCeeEEeEEeecCCC-C---EEEEe-CCCC-cccccCEEEecCC
Q 028756 90 GVESKFGVGVGRFEWLEDKN-L---WSVSG-LDGQ-SLGQFNGVVASDK 132 (204)
Q Consensus 90 ~~~i~~~~~V~~l~~~~~~~-~---w~l~~-~~G~-~~~~~d~VVla~~ 132 (204)
+++++.++.|+.|.. +++ . +.+.. .+|+ ....++.||||+=
T Consensus 147 gV~i~~~t~v~~Li~--dd~grV~GV~~~~~~~g~~~~i~AkaVVLATG 193 (603)
T TIGR01811 147 LVEKYEGWEMLDIIV--VDGNRARGIIARNLVTGEIETHSADAVILATG 193 (603)
T ss_pred CcEEEeCcEEEEEEE--cCCCEEEEEEEEECCCCcEEEEEcCEEEECCC
Confidence 588999999999975 333 2 33333 2453 2236899999943
No 221
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=21.43 E-value=2.7e+02 Score=23.80 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=27.3
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCCCCcccccCEEEec
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~G~~~~~~d~VVla 130 (204)
.+.++.. ..|.+++. .++.+.|.+++|. + .++.||+|
T Consensus 74 ~~~~~~~-~~v~~v~~--~~~~F~v~t~~~~-~-~ak~vIiA 110 (305)
T COG0492 74 FGVEIVE-DEVEKVEL--EGGPFKVKTDKGT-Y-EAKAVIIA 110 (305)
T ss_pred cCeEEEE-EEEEEEee--cCceEEEEECCCe-E-EEeEEEEC
Confidence 3455444 78888875 4337899998886 4 78999999
No 222
>PRK07395 L-aspartate oxidase; Provisional
Probab=21.07 E-value=1.4e+02 Score=27.70 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=30.7
Q ss_pred HHHHHHhcCCCCeeecCeeEEeEEeecCC--C---CEEEEeCCCCc-ccccCEEEecCCC
Q 028756 80 SICKALCHQPGVESKFGVGVGRFEWLEDK--N---LWSVSGLDGQS-LGQFNGVVASDKN 133 (204)
Q Consensus 80 sl~~~La~~l~~~i~~~~~V~~l~~~~~~--~---~w~l~~~~G~~-~~~~d~VVla~~~ 133 (204)
.|.+.+.+..+++|+.++.|.+|.. ++ + |+.+. .+|.. ...++.||||.-+
T Consensus 139 ~L~~~~~~~~gi~i~~~~~v~~Li~--~~~~g~v~Gv~~~-~~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 139 TLTEQVLQRPNIEIISQALALSLWL--EPETGRCQGISLL-YQGQITWLRAGAVILATGG 195 (553)
T ss_pred HHHHHHhhcCCcEEEECcChhhhee--cCCCCEEEEEEEE-ECCeEEEEEcCEEEEcCCC
Confidence 3444443334688999999999975 32 2 23332 34432 2368999999433
No 223
>CHL00163 ycf65 putative ribosomal protein 3; Validated
Probab=20.94 E-value=72 Score=22.68 Aligned_cols=26 Identities=23% Similarity=0.102 Sum_probs=19.1
Q ss_pred cCCCeeecCChHHHHHHHHHHhCcee
Q 028756 18 HGAPFFTVTNNDVLALVREWESGGLV 43 (204)
Q Consensus 18 hGaqyft~~~~~f~~~v~~l~~~g~v 43 (204)
+-+=||||+..+-..+-.+|.....+
T Consensus 30 lT~yfFWPr~DAWe~LK~~LesK~WI 55 (99)
T CHL00163 30 LTSYFFWPRTDAWELLKLELESKPWI 55 (99)
T ss_pred CcceeecCCccHHHHHHHHHhcCCCC
Confidence 33569999999888887777766443
No 224
>PLN02697 lycopene epsilon cyclase
Probab=20.83 E-value=2.8e+02 Score=25.71 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=31.3
Q ss_pred HHHHHHhcC---CCCeeecCeeEEeEEeecCCCCEEE-EeCCCCcccccCEEEec
Q 028756 80 SICKALCHQ---PGVESKFGVGVGRFEWLEDKNLWSV-SGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 80 sl~~~La~~---l~~~i~~~~~V~~l~~~~~~~~w~l-~~~~G~~~~~~d~VVla 130 (204)
.|.+.|++. .++++ ++++|+.|.. .++++.+ ...+|..+ .++.||.|
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~--~~~~~~vv~~~dG~~i-~A~lVI~A 243 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITE--ASDGLRLVACEDGRVI-PCRLATVA 243 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEE--cCCcEEEEEEcCCcEE-ECCEEEEC
Confidence 344454443 35665 7889999986 6677754 34566544 78999999
No 225
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=20.70 E-value=2.8e+02 Score=25.89 Aligned_cols=52 Identities=13% Similarity=0.027 Sum_probs=31.9
Q ss_pred HHHHHHhc----CCCCeeecCeeEEeEEeecCCCCEE----EEeCCCC-cccccCEEEecCCC
Q 028756 80 SICKALCH----QPGVESKFGVGVGRFEWLEDKNLWS----VSGLDGQ-SLGQFNGVVASDKN 133 (204)
Q Consensus 80 sl~~~La~----~l~~~i~~~~~V~~l~~~~~~~~w~----l~~~~G~-~~~~~d~VVla~~~ 133 (204)
.|.+.|.+ ..++++..++.|+.|.. +++... +...+|+ ....++.||+|+-+
T Consensus 133 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~--~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 133 HMLHTLFQTSLTYPQIMRYDEWFVTDLLV--DDGRVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEEEEEEe--eCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 35555443 23577899999999986 444332 2233554 22368999999544
No 226
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=20.69 E-value=2.1e+02 Score=25.57 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=30.1
Q ss_pred cHHHHH-HHhcCCCCeeecCeeEEeEEeecCCC-CEEEEeCCCCcccccCEEEec
Q 028756 78 MNSICK-ALCHQPGVESKFGVGVGRFEWLEDKN-LWSVSGLDGQSLGQFNGVVAS 130 (204)
Q Consensus 78 m~sl~~-~La~~l~~~i~~~~~V~~l~~~~~~~-~w~l~~~~G~~~~~~d~VVla 130 (204)
.....+ .|.+.-+++|. +.+|+.|.. +++ -+-|.+.+|..+ .+|.||+|
T Consensus 97 y~~~~~~~l~~~~nl~i~-~~~V~~l~~--e~~~v~GV~~~~g~~~-~a~~vVla 147 (392)
T PF01134_consen 97 YSRAMREKLESHPNLTII-QGEVTDLIV--ENGKVKGVVTKDGEEI-EADAVVLA 147 (392)
T ss_dssp HHHHHHHHHHTSTTEEEE-ES-EEEEEE--CTTEEEEEEETTSEEE-EECEEEE-
T ss_pred HHHHHHHHHhcCCCeEEE-EcccceEEe--cCCeEEEEEeCCCCEE-ecCEEEEe
Confidence 344444 44433346664 678999986 444 356777788654 78999999
No 227
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=20.33 E-value=2.4e+02 Score=24.44 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=27.5
Q ss_pred CCCeeecCeeEEeEEeecCCCCEEEEeCC------CC-cccccCEEEecC
Q 028756 89 PGVESKFGVGVGRFEWLEDKNLWSVSGLD------GQ-SLGQFNGVVASD 131 (204)
Q Consensus 89 l~~~i~~~~~V~~l~~~~~~~~w~l~~~~------G~-~~~~~d~VVla~ 131 (204)
.+++++.+ +|+++.. .+++|.++..+ |+ ....+|.||.||
T Consensus 105 ~G~~v~~~-~v~~v~~--~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~Ad 151 (388)
T TIGR02023 105 AGAELIHG-LFLKLER--DRDGVTLTYRTPKKGAGGEKGSVEADVVIGAD 151 (388)
T ss_pred CCCEEEee-EEEEEEE--cCCeEEEEEEeccccCCCcceEEEeCEEEECC
Confidence 46778654 6999987 77788876542 21 123699999994
No 228
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=20.29 E-value=1.3e+02 Score=26.67 Aligned_cols=66 Identities=12% Similarity=-0.015 Sum_probs=41.2
Q ss_pred CCceEEeCcCcHHHHHHHhcCC---C--CeeecCeeEEeEEeecCCCCE---EEEeCCCC-cccccCEEEecCCCCC
Q 028756 68 MNKKYVGVPGMNSICKALCHQP---G--VESKFGVGVGRFEWLEDKNLW---SVSGLDGQ-SLGQFNGVVASDKNVV 135 (204)
Q Consensus 68 ~~~~~vg~~Gm~sl~~~La~~l---~--~~i~~~~~V~~l~~~~~~~~w---~l~~~~G~-~~~~~d~VVla~~~~p 135 (204)
+.+-+-|.+=|..|.+.|-+.. + +.|.++++|+.|.+ .+++. ...+.+|+ ....++.||+|+-+-.
T Consensus 132 s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~--n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ 206 (477)
T KOG2404|consen 132 SGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVVDILR--NNGKVSGVEYMDASGEKSKIIGDAVVLATGGFG 206 (477)
T ss_pred CCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceeeeeec--CCCeEEEEEEEcCCCCccceecCceEEecCCcC
Confidence 3444555555667766555432 1 56899999999987 55543 33345564 3346899999954433
Done!