Query 028756
Match_columns 204
No_of_seqs 154 out of 870
Neff 7.9
Searched_HMMs 29240
Date Tue Mar 26 18:20:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028756.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2248-2252//hhsearch_pdb/028756hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qj4_A Renalase; FAD/NAD(P)-bi 1.0 1 1 146.1 13.7 172 1-194 43-219 (342)
2 1yvv_A Amine oxidase, flavin-c 1.0 1 1 113.4 19.3 163 14-196 49-211 (336)
3 3nks_A Protoporphyrinogen oxid 1.0 1 1 84.3 9.4 108 70-191 225-336 (477)
4 2ivd_A PPO, PPOX, protoporphyr 1.0 1 1 83.7 14.9 100 69-181 228-330 (478)
5 3lov_A Protoporphyrinogen oxid 1.0 1 1 80.6 9.6 104 70-191 227-333 (475)
6 3i6d_A Protoporphyrinogen oxid 1.0 1 1 77.6 12.2 107 70-191 226-335 (470)
7 2jae_A L-amino acid oxidase; o 1.0 1 1 76.4 6.9 100 69-180 229-331 (489)
8 1s3e_A Amine oxidase [flavin-c 1.0 1 1 76.2 10.5 101 70-181 206-306 (520)
9 4dsg_A UDP-galactopyranose mut 1.0 1 1 74.3 8.0 112 73-195 210-326 (484)
10 2yg5_A Putrescine oxidase; oxi 1.0 1 1 72.9 6.7 99 71-181 207-306 (453)
No 1
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=146.12 Aligned_cols=172 Identities=19% Similarity=0.229 Sum_probs=136.9
Q ss_pred CCCEEECCCCCCCEECCCCCCEEECCCH---HHHHHHHHHHHCCEEEEECCCCEEEECCCCEEEECCCCCCCCEEEECCC
Q ss_conf 9511201589971000347980210795---8999999998286243304740266437860443036998731883769
Q 028756 1 MSQRRETSEDGNEMLFDHGAPFFTVTNN---DVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPG 77 (204)
Q Consensus 1 maTRr~~~~~~~~~~fDhGaqyft~~~~---~f~~~v~~l~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~G 77 (204)
|+|++. +.+....+|||++||+.+++ +|.++++.|...|.+..|........ ......+|+..+|
T Consensus 43 ~~~~~~--~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~g 110 (342)
T 3qj4_A 43 MTTACS--PHNPQCTADLGAQYITCTPHYAKKHQRFYDELLAYGVLRPLSSPIEGMV----------MKEGDCNFVAPQG 110 (342)
T ss_dssp GCEEEC--SSCTTCEEESSCCCEEECSSHHHHTHHHHHHHHHTTSCEECCSCEETCC----------C--CCEEEECTTC
T ss_pred EEEEEC--CCCCCCEEECCCCEEECCCHHHHHHHHHHHHHHHCCCEECCCHHHCCEE----------CCCCCCCEECCCC
T ss_conf 113344--7898714755876697175588899999999976897442751005600----------1477512565899
Q ss_pred CHHHHHHHHCCCCCEEECCEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCHHCCCCCCCCCCCCCCHHH
Q ss_conf 18999998428999056481588678645999789991799731333789954788787000000399999888867278
Q 028756 78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDL 157 (204)
Q Consensus 78 m~sl~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVlA~~~~pap~~~~ll~~p~~~~~~~~~~l 157 (204)
|++++++|++.++.+++++++|++|++ .+++|.|.+.+|+.. .+|.||+| +|++++.+|+.... ..+.++.
T Consensus 111 ~~~l~~~l~~~~g~~i~~~~~V~~i~~--~~~~~~v~~~~g~~~-~ad~vV~A---~p~~~~~~ll~~~~---~~l~~~~ 181 (342)
T 3qj4_A 111 ISSIIKHYLKESGAEVYFRHRVTQINL--RDDKWEVSKQTGSPE-QFDLIVLT---MPVPEILQLQGDIT---TLISECQ 181 (342)
T ss_dssp TTHHHHHHHHHHTCEEESSCCEEEEEE--CSSSEEEEESSSCCE-EESEEEEC---SCHHHHTTCBSTHH---HHSCHHH
T ss_pred HHHHHHHHHHHCCCEEEECCEEEEEEE--CCCEEEEEECCCCEE-ECCEEEEC---CCHHHHHHHHCCCC---CCCCHHH
T ss_conf 999999999844999996888999997--699799998899989-81999999---99799998743244---3369999
Q ss_pred HHHHCCCCCCCEEEEEEECCCC--CCCCCCCEEEEECCC
Q ss_conf 9884389874257898825788--989994429993576
Q 028756 158 AVKLEEIPVNPCFALMLAFSEP--LSSDPSYQISYLNVL 194 (204)
Q Consensus 158 ~~~l~~i~~~p~~~l~l~~~~~--~~~~p~dg~~~~~~~ 194 (204)
.+.+++++|.||++++++|+++ ++ .|++|+++.+++
T Consensus 182 ~~~l~~~~~~~~~~v~l~~~~~~~~~-~~~~g~~~~~~~ 219 (342)
T 3qj4_A 182 RQQLEAVSYSSRYALGLFYEAGTKID-VPWAGQYITSNP 219 (342)
T ss_dssp HHHHHTCCBCCEEEEEEECSSCC--C-CSCSEEECSSCS
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCCC-CCEEEEECCCCC
T ss_conf 99984687466379999977887668-843259835884
No 2
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=1.00 E-value=1 Score=113.43 Aligned_cols=163 Identities=25% Similarity=0.469 Sum_probs=133.3
Q ss_pred EECCCCCCEEECCCHHHHHHHHHHHHCCEEEEECCCCEEEECCCCEEEECCCCCCCCEEEECCCCHHHHHHHHCCCCCEE
Q ss_conf 00034798021079589999999982862433047402664378604430369987318837691899999842899905
Q 028756 14 MLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPGVES 93 (204)
Q Consensus 14 ~~fDhGaqyft~~~~~f~~~v~~l~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~Gm~sl~~~La~~l~~~i 93 (204)
..+|+|+++|+..++.+.++++.|...+.+..|...+..... +.+.. ......+|+..++|..+.++|++ ++++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~l~~~l~~--g~~i 122 (336)
T 1yvv_A 49 GALDMGAQYFTARDRRFATAVKQWQAQGHVAEWTPLLYNFHA--GRLSP--SPDEQVRWVGKPGMSAITRAMRG--DMPV 122 (336)
T ss_dssp EEEECSCCCBCCCSHHHHHHHHHHHHHTSEEEECCCEEEESS--SBCCC--CCTTSCEEEESSCTHHHHHHHHT--TCCE
T ss_pred CEEECCCCEEECCCHHHHHHHHHHHHCCCEEECCCCCEECCC--CCCCC--CCCCCCCEECCCCHHHHHHHHHC--CCCE
T ss_conf 758468985725978999999999768986654662103147--65333--77887427747617799999873--5947
Q ss_pred ECCEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEE
Q ss_conf 64815886786459997899917997313337899547887870000003999998888672789884389874257898
Q 028756 94 KFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALM 173 (204)
Q Consensus 94 ~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVlA~~~~pap~~~~ll~~p~~~~~~~~~~l~~~l~~i~~~p~~~l~ 173 (204)
+++++|++|++ .+++|.|.+.+|.....+|.||+| .+++++..++. ..+.+...+..+.|.+|++++
T Consensus 123 ~~~~~v~~i~~--~~~~~~v~~~~g~~~~~a~~vV~a---~g~~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~~ 189 (336)
T 1yvv_A 123 SFSCRITEVFR--GEEHWNLLDAEGQNHGPFSHVIIA---TPAPQASTLLA--------AAPKLASVVAGVKMDPTWAVA 189 (336)
T ss_dssp ECSCCEEEEEE--CSSCEEEEETTSCEEEEESEEEEC---SCHHHHGGGGT--------TCHHHHHHHTTCCEEEEEEEE
T ss_pred EECCEEEEEEE--ECCEEEEEECCCCCCCCCCEEEEC---CCHHHHHHHHC--------CCHHHHHHHHHCCCCCEEEEE
T ss_conf 73689998788--399789995899571445989986---89899987623--------487799998536756446999
Q ss_pred EECCCCCCCCCCCEEEEECCCEE
Q ss_conf 82578898999442999357602
Q 028756 174 LAFSEPLSSDPSYQISYLNVLKG 196 (204)
Q Consensus 174 l~~~~~~~~~p~dg~~~~~~~~~ 196 (204)
+.|+++.+ .+++++++.+.+..
T Consensus 190 ~~~~~~~~-~~~~~~~~~~~~~~ 211 (336)
T 1yvv_A 190 LAFETPLQ-TPMQGCFVQDSPLD 211 (336)
T ss_dssp EEESSCCS-CCCCEEEECSSSEE
T ss_pred EEECCCCC-CCCCEEEECCCCEE
T ss_conf 98168789-88776886798546
No 3
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=84.30 Aligned_cols=108 Identities=18% Similarity=0.156 Sum_probs=86.9
Q ss_pred CEEEECCCCHHHHHHHHCCC---CCEEECCEEEEEEEEECCCCC-EEEEECCCCCCCCCCEEEECCCCCCCCCHHCCCCC
Q ss_conf 31883769189999984289---990564815886786459997-89991799731333789954788787000000399
Q 028756 70 KKYVGVPGMNSICKALCHQP---GVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGR 145 (204)
Q Consensus 70 ~~~vg~~Gm~sl~~~La~~l---~~~i~~~~~V~~i~~~~~~~~-w~l~~~~g~~~~~~d~VVlA~~~~pap~~~~ll~~ 145 (204)
..|...+||+.|+++|++.+ +++|+++++|++|++ .+++ |.|.++++ . ..+|+||+| +|++++..|+.
T Consensus 225 ~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~--~~~~~~~v~~~~~-~-~~ad~vv~a---~p~~~~~~ll~- 296 (477)
T 3nks_A 225 SQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSL--QAEGRWKVSLRDS-S-LEADHVISA---IPASVLSELLP- 296 (477)
T ss_dssp SEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEE--CGGGCEEEECSSC-E-EEESEEEEC---SCHHHHHHHSC-
T ss_pred CEEEECCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEE--CCCCEEEEEECCE-E-EECCEEEEC---CCHHHHHHHCC-
T ss_conf 27997987999999999988764979994998879998--6992599998995-8-985999989---89899997626-
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCEEEEE
Q ss_conf 9998888672789884389874257898825788989994429993
Q 028756 146 PPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSDPSYQISYL 191 (204)
Q Consensus 146 p~~~~~~~~~~l~~~l~~i~~~p~~~l~l~~~~~~~~~p~dg~~~~ 191 (204)
+..+++.+.+.+++|.+++++.+.|+++.+..+..|+.+.
T Consensus 297 ------~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~ 336 (477)
T 3nks_A 297 ------AEAAPLARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVP 336 (477)
T ss_dssp ------GGGHHHHHHHHTCCEEEEEEEEEEETTCCCSSCSSEEECC
T ss_pred ------CCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCEEECC
T ss_conf ------6688999998649998479999998887889998369823
No 4
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=1.00 E-value=1 Score=83.66 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=84.7
Q ss_pred CCEEEECCCCHHHHHHHHCCCCCEEECCEEEEEEEEECCCCCEEEEE---CCCCCCCCCCEEEECCCCCCCCCHHCCCCC
Q ss_conf 73188376918999998428999056481588678645999789991---799731333789954788787000000399
Q 028756 69 NKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSG---LDGQSLGQFNGVVASDKNVVSPRFRDVTGR 145 (204)
Q Consensus 69 ~~~~vg~~Gm~sl~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~---~~g~~~~~~d~VVlA~~~~pap~~~~ll~~ 145 (204)
...|...+||++|+++|++.++.+|+++++|++|.+ .+++|.|.. .+|+. ..+|+||+| +|.+.+..|++
T Consensus 228 ~~~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~--~~~~~~v~~~~~~~g~~-~~ad~vV~a---~~~~~~~~ll~- 300 (478)
T 2ivd_A 228 GALSTFDGGLQVLIDALAASLGDAAHVGARVEGLAR--EDGGWRLIIEEHGRRAE-LSVAQVVLA---APAHATAKLLR- 300 (478)
T ss_dssp CCEEEETTCTHHHHHHHHHHHGGGEESSEEEEEEEC--C--CCEEEEEETTEEEE-EECSEEEEC---SCHHHHHHHHT-
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHEECCCEEEEEEE--CCCEEEEEEEECCCCCE-EECCEEEEC---CCHHHHHHHHH-
T ss_conf 407987987999999999975301774977899996--49859999961489962-783999989---89899998710-
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCCC
Q ss_conf 999888867278988438987425789882578898
Q 028756 146 PPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLS 181 (204)
Q Consensus 146 p~~~~~~~~~~l~~~l~~i~~~p~~~l~l~~~~~~~ 181 (204)
++.+...+.+++++|.+++++++.|+++.+
T Consensus 301 ------~l~~~~~~~l~~~~~~~~~~v~l~~~~~~~ 330 (478)
T 2ivd_A 301 ------PLDDALAALVAGIAYAPIAVVHLGFDAGTL 330 (478)
T ss_dssp ------TTCHHHHHHHHTCCBCCEEEEEEEECTTSS
T ss_pred ------CCCHHHHHHHHCCCCCCEEEEEEEECCCCC
T ss_conf ------358999999855999857999999861137
No 5
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=1.00 E-value=1 Score=80.57 Aligned_cols=104 Identities=12% Similarity=0.124 Sum_probs=84.8
Q ss_pred CEEEECCCCHHHHHHHHCCCC-CEEECCEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCHHCCCCCCCC
Q ss_conf 318837691899999842899-9056481588678645999789991799731333789954788787000000399999
Q 028756 70 KKYVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPP 148 (204)
Q Consensus 70 ~~~vg~~Gm~sl~~~La~~l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVlA~~~~pap~~~~ll~~p~~ 148 (204)
..+...+||++|+++|++.+. .+|+++++|++|++ .+++|.|.+.+| . ..+|+||+| +|++.+..++..+
T Consensus 227 ~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~--~~~~~~v~~~~g-~-~~ad~vV~a---~p~~~~~~ll~~~-- 297 (475)
T 3lov_A 227 QFLSLETGLESLIERLEEVLERSEIRLETPLLAISR--EDGRYRLKTDHG-P-EYADYVLLT---IPHPQVVQLLPDA-- 297 (475)
T ss_dssp SEEEETTCHHHHHHHHHHHCSSCEEESSCCCCEEEE--ETTEEEEECTTC-C-EEESEEEEC---SCHHHHHHHCTTS--
T ss_pred CEEEECCHHHHHHHHHHHHCCCCEEECCCEEEEEEE--ECCEEEEEECCC-E-EECCEEEEC---CCHHHHHHHCCCC--
T ss_conf 478619829999999996546888990895049998--199899998898-3-987999989---9999999874765--
Q ss_pred CCCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCE--EEEE
Q ss_conf 888867278988438987425789882578898999442--9993
Q 028756 149 LDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSDPSYQ--ISYL 191 (204)
Q Consensus 149 ~~~~~~~~l~~~l~~i~~~p~~~l~l~~~~~~~~~p~dg--~~~~ 191 (204)
++ +.+.+++|.+++++++.|+++.. .+.++ +.+.
T Consensus 298 ---~~-----~~~~~~~~~~~~~v~l~~~~~~~-~~~~g~g~l~~ 333 (475)
T 3lov_A 298 ---HL-----PELEQLTTHSTATVTMIFDQQQS-LPIEGTGFVVN 333 (475)
T ss_dssp ---CC-----HHHHTCCEEEEEEEEEEEECCSS-CSSSSSEEEEC
T ss_pred ---CH-----HHHHCCCCCEEEEEEEEECCCCC-CCCCCEEEEEC
T ss_conf ---77-----78835998717999999788678-99998799936
No 6
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=77.56 Aligned_cols=107 Identities=10% Similarity=0.076 Sum_probs=86.2
Q ss_pred CEEEECCCCHHHHHHHHCCCC-CEEECCEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCHHCCCCCCCC
Q ss_conf 318837691899999842899-9056481588678645999789991799731333789954788787000000399999
Q 028756 70 KKYVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPP 148 (204)
Q Consensus 70 ~~~vg~~Gm~sl~~~La~~l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVlA~~~~pap~~~~ll~~p~~ 148 (204)
..+...+||++|+++|++.+. .+|+++++|++|++ .+++|.|.+.+|+. ..+|+||+| +|++.+..++..|
T Consensus 226 ~~~~~~~g~~~l~~~l~~~l~~~~i~~~~~V~~i~~--~~~~~~v~~~~g~~-~~ad~vi~a---~p~~~~~~l~~~~-- 297 (470)
T 3i6d_A 226 QFQTLSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSH--SGSCYSLELDNGVT-LDADSVIVT---APHKAAAGMLSEL-- 297 (470)
T ss_dssp -EEEETTCTHHHHHHHHHTCCSEEEECSCCEEEEEE--CSSSEEEEESSSCE-EEESEEEEC---SCHHHHHHHTTTS--
T ss_pred EEEEECCHHHHHHHHHHHHCCCCEEEECCCEEEEEE--CCCEEEEEECCCCE-EECCEEEEC---CCHHHHHHHCCCC--
T ss_conf 089948839999999997567778991892689998--49858999799988-988999989---9989999874892--
Q ss_pred CCCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCCC--CCEEEEE
Q ss_conf 888867278988438987425789882578898999--4429993
Q 028756 149 LDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSDP--SYQISYL 191 (204)
Q Consensus 149 ~~~~~~~~l~~~l~~i~~~p~~~l~l~~~~~~~~~p--~dg~~~~ 191 (204)
.+...++.++|.++.++.+.|+++.+..+ ..|+.+.
T Consensus 298 -------~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~g~l~~ 335 (470)
T 3i6d_A 298 -------PAISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVIS 335 (470)
T ss_dssp -------TTHHHHHTCEEEEEEEEEEEESSTTCCCSSCSSEEEEC
T ss_pred -------HHHHHHHCCCCCCEEEEEEEECCHHCCCCCCCEEEECC
T ss_conf -------36678735998726999999870432799997599826
No 7
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=1.00 E-value=1 Score=76.44 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=82.6
Q ss_pred CCEEEECCCCHHHHHHHHCCCC-CEEECCEEEEEEEEECCCCCEEEEECCCC--CCCCCCEEEECCCCCCCCCHHCCCCC
Q ss_conf 7318837691899999842899-90564815886786459997899917997--31333789954788787000000399
Q 028756 69 NKKYVGVPGMNSICKALCHQPG-VESKFGVGVGRFEWLEDKNLWSVSGLDGQ--SLGQFNGVVASDKNVVSPRFRDVTGR 145 (204)
Q Consensus 69 ~~~~vg~~Gm~sl~~~La~~l~-~~i~~~~~V~~i~~~~~~~~w~l~~~~g~--~~~~~d~VVlA~~~~pap~~~~ll~~ 145 (204)
...|...+||++|+++|++.++ .+|+++++|++|.+ .+++|.|...+|. ....||+||+| +|...+..+..
T Consensus 229 ~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~i~~--~~~~v~v~~~~g~~~~~~~ad~vI~a---~p~~~l~~l~~- 302 (489)
T 2jae_A 229 MMMFTPVGGMDRIYYAFQDRIGTDNIVFGAEVTSMKN--VSEGVTVEYTAGGSKKSITADYAICT---IPPHLVGRLQN- 302 (489)
T ss_dssp SSEEEETTCTTHHHHHHHHHHCGGGEETTCEEEEEEE--ETTEEEEEEEETTEEEEEEESEEEEC---SCHHHHTTSEE-
T ss_pred CCEEEECCCHHHHHHHHHHHCCCCEEEECCEEEEEEE--CCCEEEEEEECCCEEEEEECCEEEEC---CCHHHHHHCCC-
T ss_conf 6178536988999999997668772897999999998--09969999934986799988999989---79899973746-
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 99988886727898843898742578988257889
Q 028756 146 PPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPL 180 (204)
Q Consensus 146 p~~~~~~~~~~l~~~l~~i~~~p~~~l~l~~~~~~ 180 (204)
++.+...+.++++.|.++..+.+.|+++.
T Consensus 303 ------~l~~~~~~~l~~~~~~~~~kv~l~~~~~~ 331 (489)
T 2jae_A 303 ------NLPGDVLTALKAAKPSSSGKLGIEYSRRW 331 (489)
T ss_dssp ------CCCHHHHHHHHTEECCCEEEEEEEESSCH
T ss_pred ------CCCHHHHHHHHHCCCCCCEEEEEEECCCC
T ss_conf ------79999999998578764268999917888
No 8
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=1.00 E-value=1 Score=76.25 Aligned_cols=101 Identities=12% Similarity=0.125 Sum_probs=84.2
Q ss_pred CEEEECCCCHHHHHHHHCCCCCEEECCEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCHHCCCCCCCCC
Q ss_conf 31883769189999984289990564815886786459997899917997313337899547887870000003999998
Q 028756 70 KKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPL 149 (204)
Q Consensus 70 ~~~vg~~Gm~sl~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVlA~~~~pap~~~~ll~~p~~~ 149 (204)
..+...+||++|+++|++.++.+|+++++|++|.+ .+++|.|...+|+.+ .+|+||+| +|...+..++..|
T Consensus 206 ~~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~--~~~~v~v~~~~g~~~-~ad~VI~a---~p~~~l~~l~~~p--- 276 (520)
T 1s3e_A 206 QERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQ--TRENVLVETLNHEMY-EAKYVISA---IPPTLGMKIHFNP--- 276 (520)
T ss_dssp TSEEETTCTHHHHHHHHHHHGGGEESSCCEEEEEC--SSSSEEEEETTSCEE-EESEEEEC---SCGGGGGGSEEES---
T ss_pred CEEEEECCHHHHHHHHHHHCCCCEECCCEEEEEEE--CCCEEEEEECCCEEE-EECEEEEC---CCHHHHCCEEECC---
T ss_conf 36999087999999999875983882881699998--798389997898499-92989988---8979971602389---
Q ss_pred CCCCCHHHHHHHCCCCCCCEEEEEEECCCCCC
Q ss_conf 88867278988438987425789882578898
Q 028756 150 DLTFAPDLAVKLEEIPVNPCFALMLAFSEPLS 181 (204)
Q Consensus 150 ~~~~~~~l~~~l~~i~~~p~~~l~l~~~~~~~ 181 (204)
++.+...+.++++.|.++..+.+.|+++.+
T Consensus 277 --~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w 306 (520)
T 1s3e_A 277 --PLPMMRNQMITRVPLGSVIKCIVYYKEPFW 306 (520)
T ss_dssp --CCCHHHHHHTTSCCBCCEEEEEEECSSCGG
T ss_pred --CCCHHHHHHHHHCCCCCEEEEEEEECCCCC
T ss_conf --999899999982798625899999488764
No 9
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=1.00 E-value=1 Score=74.30 Aligned_cols=112 Identities=7% Similarity=0.038 Sum_probs=85.2
Q ss_pred EECCCCHHHHHHHHCCCCC-EEECC--EEEEEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCHHCCCCCCCCC
Q ss_conf 8376918999998428999-05648--15886786459997899917997313337899547887870000003999998
Q 028756 73 VGVPGMNSICKALCHQPGV-ESKFG--VGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPL 149 (204)
Q Consensus 73 vg~~Gm~sl~~~La~~l~~-~i~~~--~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVlA~~~~pap~~~~ll~~p~~~ 149 (204)
-..+||++|+++|++.+.. +|+++ ++|++|.+ .+++|.+ .+|+. ..||+||+| +|++++..++....
T Consensus 210 p~~gG~~~l~~~la~~l~~~~i~~~~~~~V~~I~~--~~~~v~~--~~G~~-~~ad~VI~a---~p~~~~~~ll~~~~-- 279 (484)
T 4dsg_A 210 PQRGGTGIIYQAIKEKLPSEKLTFNSGFQAIAIDA--DAKTITF--SNGEV-VSYDYLIST---VPFDNLLRMTKGTG-- 279 (484)
T ss_dssp ESSSCTHHHHHHHHHHSCGGGEEECGGGCEEEEET--TTTEEEE--TTSCE-EECSEEEEC---SCHHHHHHHEECSS--
T ss_pred ECCCCHHHHHHHHHHHHHHCEEEECCCCEEEEEEE--CCCEEEE--CCCCE-EECCEEEEC---CCHHHHHHHHHCCC--
T ss_conf 35789899999998542127699778840699991--3998998--89989-998999999---89999999863147--
Q ss_pred CCCCCHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCCCEEEEECCCE
Q ss_conf 88867278988438987425789882578898--99944299935760
Q 028756 150 DLTFAPDLAVKLEEIPVNPCFALMLAFSEPLS--SDPSYQISYLNVLK 195 (204)
Q Consensus 150 ~~~~~~~l~~~l~~i~~~p~~~l~l~~~~~~~--~~p~dg~~~~~~~~ 195 (204)
.++.+++.+.++.++|.++.++.++|+.+.. ..+..++++.+.+.
T Consensus 280 -~~~~~~~~~~l~~l~y~s~~~v~l~~~~~~~~~~~~~~~i~vp~~~~ 326 (484)
T 4dsg_A 280 -FKGYDEWPAIADKMVYSSTNVIGIGVKGTPPPHLKTACWLYFPEDTS 326 (484)
T ss_dssp -CTTGGGHHHHHHHCCEEEEEEEEEEEESCCCGGGTTCCEEECCSTTC
T ss_pred -CCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCC
T ss_conf -78999999998479847549999997687756688974999976997
No 10
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=1.00 E-value=1 Score=72.94 Aligned_cols=99 Identities=9% Similarity=0.171 Sum_probs=80.7
Q ss_pred EEEECCCCHHHHHHHHCCCCCEEECCEEEEEEEEECCCCC-EEEEECCCCCCCCCCEEEECCCCCCCCCHHCCCCCCCCC
Q ss_conf 1883769189999984289990564815886786459997-899917997313337899547887870000003999998
Q 028756 71 KYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNL-WSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPL 149 (204)
Q Consensus 71 ~~vg~~Gm~sl~~~La~~l~~~i~~~~~V~~i~~~~~~~~-w~l~~~~g~~~~~~d~VVlA~~~~pap~~~~ll~~p~~~ 149 (204)
.|...+||++|+++|++.++.+|+++++|++|.+ .+++ |.|.+ +|+.+ .+|+||+| +|.+.+..++..|
T Consensus 207 ~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~--~~~~~v~v~~-~~~~~-~ad~VI~a---~p~~~~~~l~~~p--- 276 (453)
T 2yg5_A 207 DKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKW--NESGATVLAD-GDIRV-EASRVILA---VPPNLYSRISYDP--- 276 (453)
T ss_dssp CEEETTCTHHHHHHHHHHHGGGEECSCCEEEEEE--ETTEEEEEET-TTEEE-EEEEEEEC---SCGGGGGGSEEES---
T ss_pred EEEECCCHHHHHHHHHHHCCCCEECCCCEEEEEE--ECCCEEEEEE-CCEEE-ECCEEEEC---CCHHHHHCCEECC---
T ss_conf 6897597579999999865775886894489998--4895089997-99199-81989986---8978883177589---
Q ss_pred CCCCCHHHHHHHCCCCCCCEEEEEEECCCCCC
Q ss_conf 88867278988438987425789882578898
Q 028756 150 DLTFAPDLAVKLEEIPVNPCFALMLAFSEPLS 181 (204)
Q Consensus 150 ~~~~~~~l~~~l~~i~~~p~~~l~l~~~~~~~ 181 (204)
.+.+...+.++++.|.++..+.+.|+++.+
T Consensus 277 --~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w 306 (453)
T 2yg5_A 277 --PLPRRQHQMHQHQSLGLVIKVHAVYETPFW 306 (453)
T ss_dssp --CCCHHHHHHGGGEEECCEEEEEEEESSCGG
T ss_pred --CCCHHHHHHHHCCCCCCEEEEEEEECCCCC
T ss_conf --999899999964788306899999799877
Done!